Permanent URL to this publication: http://dx.doi.org/10.5167/uzh-3185
Odelius, M; Kirchner, B; Hutter, J (2004). s-tetrazine in aqueous solution: A density functional study of hydrogen bonding and electronic excitations. Journal of Physical Chemistry. A, 108(11):2044-2052.
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Abstract
Using density functional theory based methods we studied vertical and adiabatic excitations of the s-tetrazine molecule, small clusters with water molecules and a single s-tetrazine molecule within 60 water molecules using periodic boundary conditions. We therefore achieve a consistent description of s-tetrazine from the isolated molecule to full solvation in water. The explicit treatment of solvent molecules allows for an accurate treatment of solute-solvent interactions. For the isolated s-tetrazine molecule a comparison with earlier high level ab initio calculations and other density functional calculations is made. In accordance with experiment the most favorable two-water-adduct displays a homodromic feature, i.e., a chain of hydrogen bonding from the nitrogen of the s-tetrazine to its methenyl (CH) group. Radial distribution functions calculated from a Car-Parrinello molecular dynamics simulation of the aqueous solution clearly show an unexpected preference of water for hydrogen bonding to the C-H group over the nitrogen lone pairs. Only infrequent and short-lived hydrogen bonds from water molecules to the nitrogen atoms are found. Calculations of vertical excitations using time-dependent density functional theory showed that the solvent shifts can be explained from the polarization of the Kohn-Sham orbitals of the solute. Hydrogen bonding has only a minor effect on the solvent shifts of low lying states of s-tetrazine.
| Item Type: | Journal Article, refereed, original work |
|---|---|
| Communities & Collections: | 07 Faculty of Science > Institute of Physical Chemistry |
| DDC: | 540 Chemistry |
| Language: | English |
| Date: | 2004 |
| Deposited On: | 27 Mar 2009 10:26 |
| Last Modified: | 23 Nov 2012 13:35 |
| Publisher: | American Chemical Society |
| ISSN: | 1089-5639 |
| Publisher DOI: | 10.1021/jp0368381 |
| WoS Citation Count: | 24 |
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