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Integrating cross-scale analysis in the spatial and temporal domains for classification of behavioral movement


Soleymani, Ali; Cachat, Jonathan M; Robinson, Kyle; Dodge, Somayeh; Kalueff, Allan V; Weibel, Robert (2014). Integrating cross-scale analysis in the spatial and temporal domains for classification of behavioral movement. Journal of Spatial Information Science, (8):1-25.

Abstract

Since various behavioral movement patterns are likely to be valid within different, unique ranges of spatial and temporal scales (e.g., instantaneous, diurnal, or seasonal)
with the corresponding spatial extents, a cross-scale approach is needed for accurate classification of behaviors expressed in movement. Here, we introduce a methodology for the characterization and classification of behavioral movement data that relies on computing and analyzing movement features jointly in both the spatial and temporal domains. The proposed methodology consists of three stages. In the first stage, focusing on the spatial domain, the underlying movement space is partitioned into several zonings that correspond to different spatial scales, and features related to movement are computed for each partitioning level. In the second stage, concentrating on the temporal domain, several movement parameters are computed fromtrajectories across a series of temporal windows of increasing sizes, yielding another set of input features for the classification. For both the spatial and the temporal domains, the “reliable scale” is determined by an automated procedure. This is the scale at which the best classification accuracy is achieved, using only spatial or temporal input features, respectively. The third stage takes the measures from the spatial and temporal domains of movement, computed at the corresponding reliable scales, as input features for behavioral classification. With a feature selection procedure, the most relevant features contributing to known behavioral states are extracted and used to learn a classification model. The potential of the proposed approach is demonstrated on a dataset of adult zebrafish (Danio rerio) swimming movements in testing tanks, following exposure to different drug treatments. Our results show that behavioral classification accuracy greatly increases when firstly cross-scale analysis is used to determine the best analysis scale, and secondly input features fromboth the spatial and the temporal domains of movement are combined. These results may have several important practical applications, including drug screening for biomedical research.

Abstract

Since various behavioral movement patterns are likely to be valid within different, unique ranges of spatial and temporal scales (e.g., instantaneous, diurnal, or seasonal)
with the corresponding spatial extents, a cross-scale approach is needed for accurate classification of behaviors expressed in movement. Here, we introduce a methodology for the characterization and classification of behavioral movement data that relies on computing and analyzing movement features jointly in both the spatial and temporal domains. The proposed methodology consists of three stages. In the first stage, focusing on the spatial domain, the underlying movement space is partitioned into several zonings that correspond to different spatial scales, and features related to movement are computed for each partitioning level. In the second stage, concentrating on the temporal domain, several movement parameters are computed fromtrajectories across a series of temporal windows of increasing sizes, yielding another set of input features for the classification. For both the spatial and the temporal domains, the “reliable scale” is determined by an automated procedure. This is the scale at which the best classification accuracy is achieved, using only spatial or temporal input features, respectively. The third stage takes the measures from the spatial and temporal domains of movement, computed at the corresponding reliable scales, as input features for behavioral classification. With a feature selection procedure, the most relevant features contributing to known behavioral states are extracted and used to learn a classification model. The potential of the proposed approach is demonstrated on a dataset of adult zebrafish (Danio rerio) swimming movements in testing tanks, following exposure to different drug treatments. Our results show that behavioral classification accuracy greatly increases when firstly cross-scale analysis is used to determine the best analysis scale, and secondly input features fromboth the spatial and the temporal domains of movement are combined. These results may have several important practical applications, including drug screening for biomedical research.

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Additional indexing

Item Type:Journal Article, refereed, original work
Communities & Collections:07 Faculty of Science > Institute of Geography
Dewey Decimal Classification:910 Geography & travel
Language:English
Date:2014
Deposited On:20 Nov 2014 09:56
Last Modified:14 Feb 2018 21:59
Publisher:University of Maine
ISSN:1948-660X
OA Status:Gold
Publisher DOI:https://doi.org/10.5311/JOSIS.2014.8.162

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