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iBRAIN2: Automated analysis and data handling for RNAi screens


Rouilly, Vincent; Pujadas, Eva; Hullár, Béla; Balázs, Csabas; Kunszt, Peter; Podvinec, Michael (2012). iBRAIN2: Automated analysis and data handling for RNAi screens. In: Gesing, Sandra; Glatard, Tristan; Olabarriaga, Silvia Delgado; Solomonides, Tony; Silverstein, Jonathan C; Montagnat, Johan; Gaignard, Alban; Krefting, Dagmar. HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences. s.n.: IOS Press, 205-213.

Abstract

We report on the implementation of a software suite dedicated to the management and analysis of large scale RNAi High Content Screening (HCS). We describe the requirements identified amongst our different users, the supported data flow, and the implemented software. Our system is already supporting productively three different laboratories operating in distinct IT infrastructures. The system was already used to analyze hundreds of RNAi HCS plates.

Abstract

We report on the implementation of a software suite dedicated to the management and analysis of large scale RNAi High Content Screening (HCS). We describe the requirements identified amongst our different users, the supported data flow, and the implemented software. Our system is already supporting productively three different laboratories operating in distinct IT infrastructures. The system was already used to analyze hundreds of RNAi HCS plates.

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Additional indexing

Item Type:Book Section, refereed, original work
Communities & Collections:Special Collections > SystemsX.ch
Special Collections > SystemsX.ch > Research, Technology and Development Projects > InfectX
Special Collections > SystemsX.ch > Systems Biology IT
Dewey Decimal Classification:570 Life sciences; biology
Language:English
Date:2012
Deposited On:26 Jun 2013 18:15
Last Modified:17 Feb 2018 20:48
Publisher:IOS Press
Series Name:Studies in Health Technology and Informatics
Number:175
ISSN:0926-9630
ISBN:978-1-61499-053-6 (print), 978-1-61499-054-3 (online)
OA Status:Green
Publisher DOI:https://doi.org/10.3233/978-1-61499-054-3-205
Related URLs:http://ebooks.iospress.nl/volume/healthgrid-applications-and-technologies-meet-science-gateways-for-life-sciences (Publisher)
PubMed ID:22942012

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