Engels, K; Giannattasio, M; Muzi-Falconi, M; Lopes, M; Ferrari, S (2011). 14-3-3 proteins regulate exonuclease 1-dependent processing of stalled replication forks. PLoS Genetics, 7(4):e1001367.
Toller, I M; Neelsen, K J; Steger, M; Hartung, M L; Hottiger, M O; Stucki, M; Kalali, B; Gerhard, M; Sartori, A A; Lopes, M; Müller, A (2011). Carcinogenic bacterial pathogen Helicobacter pylori triggers DNA double-strand breaks and a DNA damage response in its host cells. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 108(36):14944-14949.
Hashimoto, Y; Chaudhuri, A R; Lopes, M; Costanzo, V (2010). Rad51 protects nascent DNA from Mre11-dependent degradation and promotes continuous DNA synthesis. Nature Structural and Molecular Biology, 17(11):1305-1311.
Giannattasio, M; Follonier, C; Tourrière, H; Puddu, F; Lazzaro, F; Pasero, P; Lopes, M; Plevani, P; Muzi-Falconi, M (2010). Exo1 competes with repair synthesis, converts NER intermediates to long ssDNA gaps, and promotes checkpoint activation. Molecular Cell, 40(1):50-62.
Lopes, M (2009). Electron microscopy methods for studying in vivo DNA replication intermediates. Methods in Molecular Biology, 521:605-631.
Mojas, N; Lopes, M; Jiricny, J (2007). Mismatch repair-dependent processing of methylation damage gives rise to persistent single-stranded gaps in newly replicated DNA. Genes and Development, 21(24):3342-55.
Liberi, G; Cotta-Ramusino, C; Lopes, M; Sogo, J; Conti, C; Bensimon, A; Foiani, M (2006). Methods to study replication fork collapse in budding yeast. Methods in Enzymology, 409:442-62.
Lopes, M; Foiani, M; Sogo, J M (2006). Multiple mechanisms control chromosome integrity after replication fork uncoupling and restart at irreparable UV lesions. Molecular Cell, 21(1):15-27.
Cotta-Ramusino, C; Fachinetti, D; Lucca, C; Doksani, Y; Lopes, M; Sogo, J; Foiani, M (2005). Exo1 processes stalled replication forks and counteracts fork reversal in checkpoint-defective cells. Molecular Cell, 17(1):153-159.
Liberi, G; Maffioletti, G; Lucca, C; Chiolo, I; Baryshnikova, A; Cotta-Ramusino, C; Lopes, M; Pellicioli, A; Harber, J E; Foiani, M (2005). Rad51-dependent DNA structures accumulate at damaged replication forks in sgs1 mutants defective in the yeast ortholog of BLM RecQ helicase. Genes and Development, 19(3):339-350.
Grossi, S; Puglisi, A; Dmitriev, P V; Lopes, M; Shore, D (2004). Pol12, the B subunit of DNA polymerase alpha, functions in both telomere capping and length regulation. Genes and Development, 18(9):992-1006.
Lopes, M; Cotta-Ramusino, C; Liberi, G; Foiani, M (2003). Branch migrating sister chromatid junctions form at replication origins through Rad51/Rad52-independent mechanisms. Molecular Cell, 12(6):1499-1510.
Sogo, J M; Lopes, M; Foiani, M (2002). Fork reversal and ssDNA accumulation at stalled replication forks owing to checkpoint defects. Science, 297(5581):599-602.