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Number of items: 25.

Frank-Bertoncelj, Mojca; Trenkmann, Michelle; Klein, Kerstin; Karouzakis, Emmanuel; Rehrauer, Hubert; Bratus, Anna; Kolling, Christoph; Armaka, Maria; Filer, Andrew; Michel, Beat A; Gay, Renate E; Buckley, Christopher D; Kollias, George; Gay, Steffen; Ospelt, Caroline (2017). Epigenetically-driven anatomical diversity of synovial fibroblasts guides joint-specific fibroblast functions. Nature Communications, 8:14852.

Qi, Weihong; Schlapbach, Ralph; Rehrauer, Hubert (2017). RNA-Seq Data Analysis: From Raw Data Quality Control to Differential Expression Analysis. Methods in Molecular Biology, 1669:295-307.

Zatta, Sophie; Rehrauer, Hubert; Gram, Aykut; Boos, Alois; Kowalewski, Mariusz P (2017). Transcriptome analysis reveals differences in mechanisms regulating cessation of luteal function in pregnant and non-pregnant dogs. BMC Genomics, 18(1):757.

Dimitrieva, Slavica; Schlapbach, Ralph; Rehrauer, Hubert (2016). Prognostic value of cross-omics screening for kidney clear cell renal cancer survival. Biology Direct, 11(1):68.

Baerenfaller, Katja; Shu, Huan; Hirsch-Hoffmann, Matthias; Fütterer, Johannes; Opitz, Lennart; Rehrauer, Hubert; Hennig, Lars; Gruissem, Wilhelm (2016). Diurnal changes in the histone H3 signature H3K9ac|H3K27ac|H3S28p are associated with diurnal gene expression in Arabidopsis. Plant, Cell & Environment, 39(11):2557-2569.

Hatakeyama, Masaomi; Opitz, Lennart; Russo, Giancarlo; Qi, Weihong; Schlapbach, Ralph; Rehrauer, Hubert (2016). SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis. BMC Bioinformatics, 17(1):228.

Fuentes, Alejandro; Carlos, Natacha; Ruiz, Yoslaine; Callard, Danay; Sánchez, Yadira; Ochagavía, María Elena; Seguin, Jonathan; Malpica-López, Nachelli; Hohn, Thomas; Lecca, Maria Rita; Pérez, Rosabel; Doreste, Vivian; Rehrauer, Hubert; Farinelli, Laurent; Pujol, Merardo; Pooggin, Mikhail M (2016). Field trial and molecular characterization of RNAi-transgenic tomato plants that exhibit resistance to tomato yellow leaf curl geminivirus. Molecular Plant-Microbe Interactions, 29(3):197-209.

Sobek, Jens; Rehrauer, Hubert; Schauer, Stefan; Fischer, David; Patrignani, Andrea; Landgraf, Stephan; Korlach, Jonas; Schlapbach, Ralph (2016). Single-molecule DNA hybridisation studied by using a modified DNA sequencer: a comparison with surface plasmon resonance data. Methods and applications in fluorescence, 4(1):1-17.

Hartung, Mara L; Gruber, Dorothea C; Koch, Katrin N; Grüter, Livia; Rehrauer, Hubert; Tegtmeyer, Nicole; Backert, Steffen; Müller, Anne (2015). H. pylori-induced DNA strand breaks are introduced by nucleotide excision repair endonucleases and promote nf-κb target gene expression. Cell Reports, 13(1):70-79.

Lichtensteiger, Walter; Bassetti-Gaille, Catherine; Faass, Oliver; Axelstad, Marta; Boberg, Julie; Christiansen, Sofie; Rehrauer, Hubert; Georgijevic, Jelena Kühn; Hass, Ulla; Kortenkamp, Andreas; Schlumpf, Margret (2015). Differential gene expression patterns in developing sexually dimorphic rat brain regions exposed to antiandrogenic, estrogenic, or complex endocrine disruptor mixtures: glutamatergic synapses as target. Endocrinology, 156(4):1477-1493.

Hashemi Gheinani, Ali; Burkhard, Fiona C; Rehrauer, Hubert; Aquino Fournier, Catharine; Monastyrskaya, Katia (2015). MicroRNA MiR-199a-5p regulates smooth muscle cell proliferation and morphology by targeting WNT2 signaling pathway. Journal of Biological Chemistry, 290(11):7067-7086.

Müller-Edenborn, Kamila; Léger, Karolin; Glaus Garzon, Jesus F; Oertli, Carole; Mirsaidi, Ali; Richards, Peter J; Rehrauer, Hubert; Spielmann, Patrick; Hoogewijs, David; Borsig, Lubor; Hottiger, Michael O; Wenger, Roland H (2015). Hypoxia attenuates the proinflammatory response in colon cancer cells by regulating IκB. OncoTarget, 6(24):20288-20301.

Salm, Fabiana; Dimitrova, Valeriya; von Bueren, André O; Ćwiek, Paulina; Rehrauer, Hubert; Djonov, Valentin; Anderle, Pascale; Arcaro, Alexandre (2015). The phosphoinositide 3-kinase p110α isoform regulates leukemia inhibitory factor receptor expression via c-Myc and miR-125b to promote cell proliferation in medulloblastoma. PLoS ONE, 10(4):e0123958.

Schneider, Christoph; Nobs, Samuel P; Kurrer, Michael; Rehrauer, Hubert; Thiele, Christoph; Kopf, Manfred (2014). Induction of the nuclear receptor PPAR-γ by the cytokine GM-CSF is critical for the differentiation of fetal monocytes into alveolar macrophages. Nature Immunology, 15(11):1026-1037.

Azzi, Abdelhalim; Dallmann, Robert; Casserly, Alison; Rehrauer, Hubert; Patrignani, Andrea; Maier, Bert; Kramer, Achim; Brown, Steven A (2014). Circadian behavior is light-reprogrammed by plastic DNA methylation. Nature Neuroscience, 17(3):377-382.

Myburgh, Renier; Cherpin, Ophélie; Schlaepfer, Erika; Rehrauer, Hubert; Speck, Roberto F; Krause, Karl-Heinz; Salmon, Patrick (2014). Optimization of critical hairpin features allows miRNA-based gene knockdown upon single-copy transduction. Molecular Therapy - Nucleic Acids, 3:e207.

Park, C Sehwan; Rehrauer, Hubert; Mansuy, Isabelle M (2013). Genome-wide analysis of H4K5 acetylation associated with fear memory in mice. BMC Genomics, 14:539.

Sobek, Jens; Schauer, Stefan; Rehrauer, Hubert; Fischer, David; Patrignani, Andrea; Landgraf, Stephan; Schlapbach, Ralph (2013). Single molecule interactions studied by using a modified DNA sequencer: a comparison with surface plasmon resonance. In: SPIE, San Francisco, 2 February 2013 - 2 February 2013, 85960Y.

Spycher, Cornelia; Herman, Emily K; Morf, Laura; Qi, Weihong; Rehrauer, Hubert; Aquino Fournier, Catharine; Dacks, Joel B; Hehl, Adrian B (2013). An ER-directed transcriptional response to unfolded protein stress in the absence of conserved sensor-transducer proteins in Giardia lamblia. Molecular Microbiology, 88(4):754-771.

Rehrauer, Hubert; Opitz, Lennart; Tan, Ge; Sieverling, Lina; Schlapbach, Ralph (2013). Blind spots of quantitative RNA-seq: the limits for assessing abundance, differential expression, and isoform switching. BMC Bioinformatics, 14:370.

Wojtalla, Anna; Fischer, Barbara; Kotelevets, Nataliya; Mauri, Francesco A; Sobek, Jens; Rehrauer, Hubert; Wotzkow, Carlos; Tschan, Mario P; Seckl, Michael J; Zangemeister-Wittke, Uwe; Arcaro, Alexandre (2013). Targeting the phosphoinositide 3-kinase p110-α isoform impairs cell proliferation, survival, and tumor growth in small cell lung cancer. Clinical Cancer Research, 19(1):96-105.

Shi, Yandong; Moura, Ubiratan; Opitz, Isabelle; Soltzermann, Alex; Rehrauer, Hubert; Thies, Svenja; Weder, Walter; Stahel, Rolf A; Felley-Bosco, Emanuela (2012). Role of hedgehog signaling in malignant pleural mesothelioma. Clinical Cancer Research, 18(17):4646-4656.

Müller, Marlen; Patrignani, Andrea; Rehrauer, Hubert; Gruissem, Wilhelm; Hennig, Lars (2012). Evaluation of alternative RNA labeling protocols for transcript profiling with Arabidopsis AGRONOMICS1 tiling arrays. Plant Methods, 8:18.

Huwiler, Simona G; Beyer, Christian; Fröhlich, Jürg; Hennecke, Hauke; Egli, Thomas; Schürmann, David; Rehrauer, Hubert; Fischer, Hans-Martin (2012). Genome-wide transcription analysis of Escherichia coli in response to extremely low-frequency magnetic fields. Bioelectromagnetics, 33(6):488-496.

Jovanovic, Marko; Reiter, Lukas; Clark, Alejandra; Weiss, Manuel; Picotti, Paola; Rehrauer, Hubert; Frei, Andreas; Neukomm, Lukas; Kaufman, Ethan; Wollscheid, Bernd; Simard, Martin J; Miska, Eric; Aebersold, Ruedi; Gerber, Andre P; Hengartner, Michael O (2012). RIPchipSRM, a new combinatorial large scale approach identifies a set of translationally regulated bantam/miR58 targets in C. elegans. Genome Research, 22(7):1360-1371.

This list was generated on Tue Feb 20 18:05:24 2018 CET.