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Number of items: 26.

Yakimovich, Artur; Yakimovich, Yauhen; Schmid, Michael; Mercer, Jason; Sbalzarini, Ivo F; Greber, Urs F (2016). Infectio: a Generic Framework for Computational Simulation of Virus Transmission between Cells. mSphere, 1(1):e00078-15.

Paul, Grégory; Cardinale, Janick; Sbalzarini, Ivo F (2013). Coupling Image Restoration and Segmentation: A Generalized Linear Model/Bregman Perspective. International Journal of Computer Vision, 104(1):69-93.

Sbalzarini, Ivo F (2013). Modeling and simulation of biological systems from image data. BioEssays, 35(5):482-490.

Reboux, Sylvain; Schrader, Birte; Sbalzarini, Ivo F (2012). A self-organizing Lagrangian particle method for adaptive-resolution advection–diffusion simulations. Journal of Computational Physics, 231(9):3623-3646.

Ramaswamy, Rajesh; González-Segredo, Nélido; Sbalzarini, Ivo F; Grima, Ramon (2012). Discreteness-induced concentration inversion in mesoscopic chemical systems. Nature Communications, 3:779.

Awile, Omar; Büyükkeçeci, Ferit; Reboux, Sylvain; Sbalzarini, Ivo F (2012). Fast neighbor lists for adaptive-resolution particle simulations. Computer Physics Communications, 183(5):1073-1081.

Paul, Grégory; Müller, Christian L; Sbalzarini, Ivo F (2011). Sensitivity analysis from evolutionary algorithm search paths. In: EVOLVE, Workshop on Probability, Set Oriented Numerics and Evolutionary Computation, Luxembourg, 25 May 2011 - 27 May 2011.

Ramaswamy, Rajesh; Sbalzarini, Ivo F (2011). A partial-propensity formulation of the stochastic simulation algorithm for chemical reaction networks with delays. Journal of Chemical Physics, 134(1):014106.

Bottier, Celine; Gabella, Chiara; Vianay, Benoît; Buscemi, Lara; Sbalzarini, Ivo F; Meister, Jean-Jacques; Verkhovsky, Alexander B (2011). Dynamic measurement of the height and volume of migrating cells by a novel fluorescence microscopy technique. Lab on a chip, 11:3855-3863.

Ramaswamy, Rajesh; Sbalzarini, Ivo F (2011). Exact on-lattice stochastic reaction-diffusion simulations using partial-propensity methods. Journal of Chemical Physics, 135(24):244103.

Helmuth, Jo A; Reboux, Sylvain; Sbalzarini, Ivo F (2011). Exact stochastic simulations of intra-cellular transport by mechanically coupled molecular motors. Journal of Computer Science, 2(4):324-334.

Müller, Christian L; Ramaswamy, Rajesh; Sbalzarini, Ivo F (2011). Global Parameter Identification of Stochastic Reaction Networks from Single Trajectories. Advances in Experimental Medicine and Biology, 736:477-498.

Ambühl, Mark E; Brepsant, Charles; Meister, Jean-Jacques; Verkhovsky, Alexander B; Sbalzarini, Ivo F (2011). High-resolution cell outline segmentation and tracking from phase-contrast microscopy images. Journal of Microscopy, 245(2):161-170.

Ramaswamy, Rajesh; Sbalzarini, Ivo F (2011). Intrinsic noise alters the frequency spectrum of mesoscopic oscillatory chemical reaction systems. Scientific Reports, 1:154.

Ramaswamy, Rajesh; Sbalzarini, Ivo F; González-Segredo, Nélido (2011). Noise-Induced Modulation of the Relaxation Kinetics around a Non-Equilibrium Steady State of Non-Linear Chemical Reaction Networks. PLoS ONE, 6(1):e16045.

Ramaswamy, Rajesh; Sbalzarini, Ivo F (2010). Fast Exact Stochastic Simulation Algorithms Using Partial Propensities. In: International Conference of Numerical Analysis and Applied Mathematics, Rhodes, Greece, 19 September 2010 - 25 September 2010, 1338-1341.

Awile, Omar; Demirel, Ömer; Sbalzarini, Ivo F; Simos, Theodore E; Psihoyios, George; Tsitouras, Ch (2010). Toward an Object-Oriented Core of the PPM Library. In: International Conference of Numerical Analysis and Applied Mathematics (ICNAAM), Rhodes, Greece, 19 September 2010 - 25 September 2010, 1313-1316.

Müller, Christian L; Sbalzarini, Ivo F (2010). Gaussian Adaptation as a unifying framework for continuous black-box optimization and adaptive Monte Carlo sampling. In: 2010 IEEE Congress on Evolutionary Computation (CEC), Barcelona, Spain, 18 July 2010 - 23 July 2010, 1-8.

Ramaswamy, Rajesh; Sbalzarini, Ivo F (2010). A partial-propensity variant of the composition-rejection stochastic simulation algorithm for chemical reaction networks. The Journal of chemical physics, 132(4):044102.

Polyansky, Anton A; Ramaswamy, Rajesh; Volynsky, Pavel E; Sbalzarini, Ivo F; Marrink, Siewert J; Efremov, Roman G (2010). Antimicrobial Peptides Induce Growth of Phosphatidylglycerol Domains in a Model Bacterial Membrane. Journal of Physical Chemistry Letters, 1(20):3108-3111.

Helmuth, Jo A; Paul, Grégory; Sbalzarini, Ivo F (2010). Beyond co-localization: inferring spatial interactions between sub-cellular structures from microscopy images. BMC Bioinformatics, 11(1):372.

Schrader, Birte; Reboux, Sylvain; Sbalzarini, Ivo F (2010). Discretization correction of general integral PSE Operators for particle methods. Journal of Computational Physics, 229(11):4159-4182.

Müller, Christian L; Sbalzarini, Ivo F (2010). Gaussian Adaptation Revisited – An Entropic View on Covariance Matrix Adaptation. Lecture Notes in Computer Science, 6024:432-441.

Cardinale, Janick; Rauch, Alexander; Barral, Yves; Székely, Gábor; Sbalzarini, Ivo F (2009). Bayesian image analysis with on-line confidence estimates and its application to microtubule tracking. In: IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, 28 June 2009 - 1 July 2009, 1091-1094.

Ramaswamy, Rajesh; González-Segredo, Nélido; Sbalzarini, Ivo F (2009). A new class of highly efficient exact stochastic simulation algorithms for chemical reaction networks. The Journal of chemical physics, 130(24):244104.

Helmuth, Jo A; Sbalzarini, Ivo F (2009). Deconvolving Active Contours for Fluorescence Microscopy Images. Lecture Notes in Computer Science, 5875:544-553.

This list was generated on Fri Jul 21 10:50:20 2017 CEST.