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Vahdati, Ali R; Wagner, Andreas (2018). Population size affects adaptation in complex ways: simulations on empirical adaptive landscapes. Evolutionary Biology, 45(2):156-169.
Vahdati, Ali R; Sprouffske, Kathleen; Wagner, Andreas (2017). Effect of population size and mutation rate on the evolution of RNA sequences on an adaptive landscape determined by RNA folding. International Journal of Biological Sciences, 13(9):1138-1151.
Vahdati, Ali R; Wagner, Andreas (2016). Parallel or convergent evolution in human population genomic data revealed by genotype networks. BMC Evolutionary Biology, 16:154.
Dall'Olio, Giovanni M; Vahdati, Ali R; Bertranpetit, Jaume; Wagner, Andreas; Laayouni, Hafid (2014). VCF2Networks: Applying genotype networks to single-nucleotide variants data. Bioinformatics, 31(3):438-439.