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Items where Subject is "04 Faculty of Medicine > University Hospital Zurich > Clinic for Infectious Diseases"

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Hongler, J; Musaazi, J; Ledergerber, B; Eberhard, N; Sekaggya-Wiltshire, C; Keller, P M; Fehr, J; Castelnuovo, B (2018). Comparison of Löwenstein-Jensen and BACTEC MGIT 960 culture for Mycobacterium tuberculosis in people living with HIV. HIV Medicine:Epub ahead of print.

Schreiber, Peter W; Köhler, Nora; Cervera, Rosita; Hasse, Barbara; Sax, Hugo; Keller, Peter M (2018). Detection limit of Mycobacterium chimaera in water samples for monitoring medical device safety: insights from a pilot experimental series. Journal of Hospital Infection, 99(3):284-289.

Clack, Lauren; Zingg, Walter; Saint, Sanjay; Casillas, Alejandra; Touveneau, Sylvie; da Liberdade Jantarada, Fabricio; Willi, Ursina; van der Kooi, Tjallie; Damschroder, Laura J; Forman, Jane H; Harrod, Molly; Krein, Sarah; Pittet, Didier; Sax, Hugo; PROHIBIT Consortium (2018). Implementing infection prevention practices across European hospitals: an in-depth qualitative assessment. BMJ Quality and Safety:Epub ahead of print.

Reinwald, M; Silva, J T; Mueller, N J; Fortún, J; Garzoni, C; de Fijter, J W; Fernández-Ruiz, M; Grossi, P; Aguado, J M (2018). ESCMID Study Group for Infections in Compromised Hosts (ESGICH) Consensus Document on the safety of targeted and biological therapies: an infectious diseases perspective (Intracellular signaling pathways: tyrosine kinase and mTOR inhibitors). Clinical Microbiology and Infection, 24 Suppl:S53-S70.

Engel, Tanja; Raffenberg, Marieke; Marzolini, Catia; Cavassini, Matthias; Kovari, Helen; Hasse, Barbara; Tarr, Philip E (2018). HIV and Aging - Perhaps Not as Dramatic as We Feared? Gerontology:Epub ahead of print.

Niederhauser, Andrea; Züllig, Stephanie; Marschall, Jonas; Schwappach, David L B (2018). Nurses' and Physicians' Perceptions of Indwelling Urinary Catheter Practices and Culture in Their Institutions. Journal of Patient Safety:Epub ahead of print.

Ronit, Andreas; Hatleberg, Camilla Ingrid; Ryom, Lene; Bonnet, Fabrice; El-Sadr, Wafaa; Reiss, Peter; Weber, Rainer; Pradier, Christian; De Wit, Stephane; Law, Matthew; Monforte, Antonella d'Arminio; Lundgren, Jens; Mocroft, Amanda; Phillips, Andrew N; Sabin, Caroline A; D:A:D Study Group (2018). Associations between serum albumin and serious non-AIDS events among people living with HIV. AIDS, 32(13):1837-1848.

Strouvelle, Victoria P; Braun, Dominique L; Vongrad, Valentina; Scherrer, Alexandra U; Kok, Yik Lim; Kouyos, Roger D; Stöckle, Marcel; Rauch, Andri; Darling, Katharine; Hoffmann, Matthias; Metzner, Karin J; Günthard, Huldrych F; Zurich Primary HIV Infection Study; Swiss HIV Cohort Study (2018). No Effect of Pegylated Interferon-α on Total HIV-1 DNA Load in HIV-1/HCV Coinfected Patients. Journal of Infectious Diseases, 217(12):1883-1888.

Kadelka, Claus; Liechti, Thomas; Ebner, Hanna; Schanz, Merle; Rusert, Peter; Friedrich, Nikolas; Stiegeler, Emanuel; Braun, Dominique L; Huber, Michael; Scherrer, Alexandra U; Weber, Jacqueline; Uhr, Therese; Kuster, Herbert; Misselwitz, Benjamin; Cavassini, Matthias; Bernasconi, Enos; Hoffmann, Matthias; Calmy, Alexandra; Battegay, Manuel; Rauch, Andri; Yerly, Sabine; Aubert, Vincent; Klimkait, Thomas; Böni, Jürg; Kouyos, Roger D; Günthard, Huldrych F; Trkola, Alexandra; Swiss HIV Cohort Study (2018). Distinct, IgG1-driven antibody response landscapes demarcate individuals with broadly HIV-1 neutralizing activity. Journal of Experimental Medicine, 215(6):1589-1608.

Liechti, Thomas; Günthard, Huldrych F; Trkola, Alexandra (2018). OMIP-047: High-Dimensional phenotypic characterization of B cells. Cytometry. Part A, 93(6):592-596.

Santos, J R; Cozzi-Lepri, A; Phillips, A; De Wit, S; Pedersen, C; Reiss, P; Blaxhult, A; Lazzarin, A; Sluzhynska, M; Orkin, C; Duvivier, C; Bogner, J; Gargalianos-Kakolyris, P; Schmid, P; Hassoun, G; Khromova, I; Beniowski, M; Hadziosmanovic, V; Sedlacek, D; Paredes, R; Lundgren, J D; EuroSIDA study group (2018). Long-term effectiveness of recommended boosted protease inhibitor-based antiretroviral therapy in Europe. HIV Medicine, 19(5):324-338.

Marzel, Alex; Kusejko, Katharina; Weber, Rainer; Bruggmann, Philip; Rauch, Andri; Roth, Jan A; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Hoffmann, Matthias; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Perreau, Matthieu; Günthard, Huldrych F; Kouyos, Roger D; Swiss HIV Cohort Study (2018). The Cumulative Impact of Harm Reduction on the Swiss HIV Epidemic: Cohort Study, Mathematical Model, and Phylogenetic Analysis. Open Forum Infectious Diseases, 5(5):ofy078.

Wright, E J; Grund, B; Robertson, K R; Cysique, L; Brew, B J; Collins, G L; Poehlman-Roediger, M; Vjecha, M J; Penalva de Oliveira, A C; Standridge, B; Carey, C; Avihingsanon, A; Florence, E; Lundgren, J D; Arenas-Pinto, A; Mueller, N J; Winston, A; Nsubuga, M S; Lal, L; Price, R W; INSIGHT START, Neurology Substudy Group (2018). No neurocognitive advantage for immediate antiretroviral treatment in adults with greater than 500 CD4+ T-cell counts. AIDS, 32(8):985-997.

Böni, Laura; Kuster, Stefan P; Bartik, Bianka; Zbinden, Reinhard; Zingg, Patrick O; Achermann, Yvonne (2018). Cutibacterium avidum Colonization in the Groin is Associated with Obesity: A Potential Risk Factor for Hip Periprosthetic Joint Infection (PJI). Clinical Infectious Diseases:Epub ahead of print.

Achhra, Amit C; Sabin, Caroline; Ryom, Lene; Hatleberg, Camilla; d'Aminio Monforte, Antonella; De Wit, Stephane; Phillips, Andrew; Pradier, Christian; Weber, Rainer; Reiss, Peter; El-Sadr, Wafaa; Bonnet, Fabrice; Mocroft, Amanda; Lundgren, Jens; Law, Matthew G; D:A:D Study Group (2018). Body Mass Index and The Risk of Serious Non-Aids Events and All Cause Mortality in Treated Hiv-Positive Individuals: D: A: D Cohort Analysis. Journal of Acquired Immune Deficiency Syndromes, 78(5):579-588.

Ryom, Lene; Lundgren, Jens D; El-Sadr, Wafaa; Reiss, Peter; Kirk, Ole; Law, Matthew; Phillips, Andrew; Weber, Rainer; Fontas, Eric; d' Arminio Monforte, Antonella; De Wit, Stéphane; Dabis, Francois; Hatleberg, Camilla I; Sabin, Caroline; Mocroft, Amanda; D:A:D Study Group (2018). Cardiovascular disease and use of contemporary protease inhibitors: the D:A:D international prospective multicohort study. The lancet. HIV., 5(6):e291-e300.

Reinschmidt, Sara; Turk, Teja; Tarr, Philip E; Kouyos, Roger; Hauser, Christoph; Schmid, Patrick; Weber, Rainer; Kaufmann, Philipp; Buechel, Ronny R; Kovari, Helen; Swiss HIV Cohort Study (2018). Incidental Findings on Coronary Computed Tomography Angiography in Human Immunodeficiency Virus (HIV)-Positive and HIV-Negative Persons. Open Forum Infectious Diseases:ofy084.

Aebi-Popp, K; Mercanti, V; Voide, C; Nemeth, J; Cusini, A; Jakopp, B; Nicca, D; Rasi, M; Bruno, A; Calmy, A; Martinez de Tejada, B; Swiss HIV Cohort Study (2018). Neglect of attention to reproductive health in women with HIV infection: contraceptive use and unintended pregnancies in the Swiss HIV Cohort Study. HIV Medicine, 19(5):339-346.

von Braun, Amrei; Sekaggya-Wiltshire, Christine; Bachmann, Nadine; Ssemwanga, Deogratius; Scherrer, Alexandra U; Nanyonjo, Maria; Kapaata, Anne; Kaleebu, Pontiano; Günthard, Huldrych F; Castelnuovo, Barbara; Fehr, Jan; Kambugu, Andrew (2018). HIV-1 drug resistance among Ugandan adults attending an urban out-patient clinic. Journal of Acquired Immune Deficiency Syndromes, 78(5):566-573.

Isenring, Egon; Fehr, Jan; Gültekin, Nejla; Schlagenhauf, Patricia (2018). Infectious disease profiles of Syrian and Eritrean migrants presenting in Europe: A systematic review. Travel Medicine and Infectious Disease:Epub ahead of print.

Caro-Vega, Yanink; Schultze, Anna; W Efsen, Anne Marie; Post, Frank A; Panteleev, Alexander; Skrahin, Aliaksandr; Miro, Jose M; Girardi, Enrico; Podlekareva, Daria N; Lundgren, Jens D; Sierra-Madero, Juan; Toibaro, Javier; Andrade-Villanueva, Jaime; Tetradov, Simona; Fehr, Jan; Caylà, Joan; Losso, Marcelo H; Miller, Robert F; Mocroft, Amanda; Kirk, Ole; Crabtree-Ramírez, Brenda (2018). Differences in response to antiretroviral therapy in HIV-positive patients being treated for tuberculosis in Eastern Europe, Western Europe and Latin America. BMC Infectious Diseases, 18(1):191.

Keller, Nadia; Andreoni, Federica; Reiber, Claudine; Luethi-Schaller, Helga; Schuepbach, Reto Andreas; Moch, Holger; Maggio, Ewerton Marques; Zinkernagel, Annelies Sophie (2018). Human Streptococcal Necrotizing Fasciitis Histopathology Mirrored in a Murine Model. American Journal of Pathology, 188(7):1517-1523.

Neofytos, D; Chatzis, O; Nasioudis, D; Boely Janke, E; Doco Lecompte, T; Garzoni, C; Berger, C; Cussini, A; Boggian, K; Khanna, N; Manuel, O; Mueller, N J; van Delden, C; Swiss Transplant Cohort Study (2018). Epidemiology, risk factors and outcomes of invasive aspergillosis in solid organ transplant recipients in the Swiss Transplant Cohort Study. Transplant Infectious Disease, 20(4):e12898.

Mbunkah, Herbert A; Marzel, Alex; Schmutz, Stefan; Kok, Yik Lim; Zagordi, Osvaldo; Shilaih, Mohaned; Nsanwe, Ndi N; Mbu, Eyongetah T; Besong, Lydia M; Sama, Bella A; Orock, Emmanuel; Kouyos, Roger D; Günthard, Huldrych F; Metzner, Karin J (2018). Low prevalence of transmitted HIV-1 drug resistance detected by a dried blood spot (DBS)-based next-generation sequencing (NGS) method in newly diagnosed individuals in Cameroon in the years 2015-16. Journal of Antimicrobial Chemotherapy, 73(7):1917-1929.

Yu, Kang; Davidson, Chelsea L; Wójtowicz, Agnieszka; Lisboa, Luiz; Wang, Ting; Airo, Adriana M; Villard, Jean; Buratto, Jeremie; Sandalova, Tatyana; Achour, Adnane; Humar, Atul; Boggian, Katia; Cusini, Alexia; van Delden, Christian; Egli, Adrian; Manuel, Oriol; Mueller, Nicolas; Bochud, Pierre-Yves; Swiss Transplant Cohort Study; Burshtyn, Deborah N (2018). LILRB1 polymorphisms influence posttransplant HCMV susceptibility and ligand interactions. Journal of Clinical Investigation, 128(4):1523-1537.

Marzel, Alex; Kouyos, Roger D; Reinschmidt, Sara; Balzer, Katharina; Garon, Fabienne; Spitaleri, Monica; Matthes, Nicolas; Suter, Paolo; Weber, Rainer; Staehelin, Cornelia; Lecompte, Thanh Doco; Tarr, Philip; Kovari, Helen; Swiss HIV Cohort Study (2018). Dietary Patterns and Physical Activity Correlate With Total Cholesterol Independently of Lipid-Lowering Drugs and Antiretroviral Therapy in Aging People Living With Human Immunodeficiency Virus. Open Forum Infectious Diseases, 5(4):ofy067.

Schreiber, Peter W; Schmid, Adrian; Fagagnini, Stefania; Kröger, Arne; Vrugt, Bart; Reiner, Cäcilia S; Boggian, Katia; Schiesser, Marc; Müllhaupt, Beat; Günthard, Huldrych F (2018). MRI and PET-CT Failed to Differentiate Between Hepatic Malignancy and Brucelloma. Open Forum Infectious Diseases, 5(4):ofy052.

Aebi-Popp, K; Wandeler, G; Salazar-Vizcaya, L; Metzner, K; Stöckle, M; Cavassini, M; Hoffmann, M; Lüthi, A; Suter, F; Bernasconi, E; Fehr, J; Furrer, H; Rauch, A; Swiss HIV Cohort Study (2018). Rapid decline of anti-hepatitis C virus (HCV) antibodies following early treatment of incident HCV infections in HIV-infected men who have sex with men. HIV Medicine, 19(6):420-425.

Tarr, Philip E; Ledergerber, Bruno; Calmy, Alexandra; Doco-Lecompte, Thanh; Marzel, Alex; Weber, Rainer; Kaufmann, Philipp A; Nkoulou, René; Buechel, Ronny R; Kovari, Helen; Swiss HIV Cohort Study (2018). Subclinical coronary artery disease in Swiss HIV-positive and HIV-negative persons. European Heart Journal, 39(23):2147-2154.

Hatleberg, Camilla I; Ryom, Lene; El-Sadr, Wafaa; Mocroft, Amanda; Reiss, Peter; De Wit, Stephane; Dabis, Francois; Pradier, Christian; d'Arminio Monforte, Antonella; Kovari, Helen; Law, Matthew; Lundgren, Jens D; Sabin, Caroline A; D:A:D Study Group (2018). Gender differences in the use of cardiovascular interventions in HIV-positive persons; the D:A:D Study. Journal of the International Aids Society:e25083.

Veit, Olivia; Domingo, Cristina; Niedrig, Matthias; Staehelin, Cornelia; Sonderegger, Beat; Héquet, Delphine; Stoeckle, Marcel; Calmy, Alexandra; Schiffer, Veronique; Bernasconi, Enos; Flury, Domenica; Hatz, Christoph; Zwahlen, Marcel; Furrer, Hansjakob; Swiss HIV Cohort Study (2018). Long-term Immune Response to Yellow Fever Vaccination in Human Immunodeficiency Virus (HIV)-Infected Individuals Depends on HIV RNA Suppression Status: Implications for Vaccination Schedule. Clinical Infectious Diseases, 66(7):1099-1108.

Sekaggya-Wiltshire, Christine; von Braun, Amrei; Lamorde, Mohammed; Ledergerber, Bruno; Buzibye, Allan; Henning, Lars; Musaazi, Joseph; Gutteck, Ursula; Denti, Paolo; de Kock, Miné; Jetter, Alexander; Byakika-Kibwika, Pauline; Eberhard, Nadia; Matovu, Joshua; Joloba, Moses; Muller, Daniel; Manabe, Yukari C; Kamya, Moses R; Corti, Natascia; Kambugu, Andrew; Castelnuovo, Barbara; Fehr, Jan S (2018). Delayed Sputum Conversion in TB-HIV Co-Infected Patients with Low Isoniazid and Rifampicin Concentrations. Clinical Infectious Diseases:Epub ahead of print.

Becker, A S; Blüthgen, C; Phi van, V D; Sekaggya-Wiltshire, C; Castelnuovo, B; Kambugu, A; Fehr, J; Frauenfelder, T (2018). Detection of tuberculosis patterns in digital photographs of chest X-ray images using Deep Learning: feasibility study. The International Journal of Tuberculosis and Lung Disease, 22(3):328-335.

Damonti, Lauro; Erard, Véronique; Garbino, Jorge; Schrenzel, Jacques; Zimmerli, Stefan; Mühlethaler, Konrad; Imhof, Alexander; Zbinden, Reinhard; Fehr, Jan; Boggian, Katia; Bruderer, Thomas; Flückiger, Ursula; Frei, Reno; Orasch, Christina; Conen, Anna; Khanna, Nina; Bregenzer, Thomas; Bille, Jacques; Lamoth, Frédéric; Marchetti, Oscar; Bochud, Pierre-Yves; Fungal Infection Network of Switzerland (FUNGINOS) (2018). Correction to: Catheter retention as a consequence rather than a cause of unfavorable outcome in candidemia. Intensive Care Medicine, 44(3):405-407.

Clack, Lauren; Passerini, Simone; Wolfensberger, Aline; Sax, Hugo; Manser, Tanja (2018). Frequency and Nature of Infectious Risk Moments During Acute Care Based on the INFORM Structured Classification Taxonomy. Infection Control and Hospital Epidemiology, 39(3):272-279.

Sommerstein, Rami; Hasse, Barbara; Marschall, Jonas; Sax, Hugo; Genoni, Michele; Schlegel, Matthias; Widmer, Andreas F; Swiss Chimaera Taskforce (2018). Global Health Estimate of Invasive Mycobacterium chimaera Infections Associated with Heater-Cooler Devices in Cardiac Surgery. Emerging Infectious Diseases, 24(3):576-578.

Clack, Lauren; Passerini, Simone; Manser, Tanja; Sax, Hugo (2018). Likelihood of Infectious Outcomes Following Infectious Risk Moments During Patient Care-An International Expert Consensus Study and Quantitative Risk Index. Infection Control and Hospital Epidemiology, 39(3):280-289.

Béguelin, Charles; Suter, Annatina; Bernasconi, Enos; Fehr, Jan; Kovari, Helen; Bucher, Heiner C; Stoeckle, Marcel; Cavassini, Mathias; Rougemont, Mathieu; Schmid, Patrick; Wandeler, Gilles; Rauch, Andri; Swiss HIV Cohort Study (2018). Trends in HCV treatment uptake, efficacy and impact on liver fibrosis in the Swiss HIV Cohort Study. Liver International, 38(3):424-431.

Plate, Andreas; Stadler, Laura; Sutter, Reto; Anagnostopoulos, Alexia; Frustaci, Dario; Zbinden, Reinhard; Fucentese, Sandro F; Zinkernagel, Annelies S; Zingg, Patrick O; Achermann, Yvonne (2018). Inflammatory disorders mimicking periprosthetic joint infections may result in false positive α-defensin. Clinical Microbiology and Infection:Epub ahead of print.

Cozzi-Lepri, A; Zangerle, R; Machala, L; Zilmer, K; Ristola, M; Pradier, C; Kirk, O; Sambatakou, H; Fätkenheuer, G; Yust, I; Schmid, P; Gottfredsson, M; Khromova, I; Jilich, D; Flisiak, R; Smidt, J; Rozentale, B; Radoi, R; Losso, M H; Lundgren, J D; Mocroft, A; EuroSIDA Study Group (2018). Incidence of cancer and overall risk of mortality in individuals treated with raltegravir-based and non-raltegravir-based combination antiretroviral therapy regimens. HIV Medicine, 19(2):102-117.

Kühnert, Denise; Kouyos, Roger; Shirreff, George; Pečerska, Jūlija; Scherrer, Alexandra U; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Günthard, Huldrych F; Stadler, Tanja; Bonhoeffer, Sebastian; Swiss HIV Cohort Study (2018). Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics. PLoS Pathogens, 14(2):e1006895.

Seidl, Kati; Leemann, Michèle; Zinkernagel, Annelies S (2018). The ArlRS two-component system is a regulator of Staphylococcus aureus-induced endothelial cell damage. European Journal of Clinical Microbiology & Infectious Diseases, 37(2):289-292.

Bachofner, Jacqueline; Valli, Piero V; Bergamin, Irina; Kröger, Arne; Künzler, Patrizia; Baserga, Adriana; Braun, Dominique L; Seifert, Burkhardt; Moncsek, Anja; Fehr, Jan; Semela, David; Magenta, Lorenzo; Müllhaupt, Beat; Terziroli Beretta-Piccoli, Benedetta; Mertens, Joachim; Swiss Hepatitis C Cohort Study (2018). Excellent outcome of direct antiviral treatment for chronic hepatitis C in Switzerland. Swiss Medical Weekly, 148:w14560.

Orasch, Christina; Mertz, Dominik; Garbino, Jorge; van Delden, Christian; Emonet, Stephane; Schrenzel, Jacques; Zimmerli, Stefan; Damonti, Lauro; Mühlethaler, Konrad; Imhof, Alexander; Ruef, Christian; Fehr, Jan; Zbinden, Reinhard; Boggian, Katia; Bruderer, Thomas; Flückiger, Ursula; Conen, Anna; Khanna, Nina; Frei, Reno; Bregenzer, Thomas; Lamoth, Frédéric; Erard, Véronique; Bochud, Pierre-Yves; Calandra, Thierry; Bille, Jacques; Marchetti, Oscar (2018). Fluconazole non-susceptible breakthrough candidemia after prolonged low-dose prophylaxis: a prospective FUNGINOS study. Journal of Infection, 76(5):489-495.

Cusini, A; Béguelin, C; Stampf, S; Boggian, K; Garzoni, C; Koller, M; Manuel, O; Meylan, P; Mueller, N J; Hirsch, H H; Weisser, M; Berger, C; van Delden, C; Swiss Transplant Cohort Study (2018). Clostridium difficile infection is associated with graft loss in solid organ transplant recipients. American Journal of Transplantation, 18(7):1745-1754.

Schreiber, Peter W; Bischoff-Ferrari, Heike A; Boggian, Katia; Bonani, Marco; van Delden, Christian; Enriquez, Natalia; Fehr, Thomas; Garzoni, Christian; Hirsch, Hans H; Hirzel, Cédric; Manuel, Oriol; Meylan, Pascal; Saleh, Lanja; Weisser, Maja; Mueller, Nicolas J; Swiss Transplant Cohort Study (2018). Bone metabolism dynamics in the early post-transplant period following kidney and liver transplantation. PLoS ONE, 13(1):e0191167.

Andreoni, Federica; Ugolini, Fabio; Keller, Nadia; Neff, Andrina; Nizet, Victor; Hollands, Andrew; Marques Maggio, Ewerton; Zinkernagel, Annelies S; Schuepbach, Reto A (2018). Immunoglobulin Attenuates Streptokinase-Mediated Virulence in Streptococcus dysgalactiae Subspecies equisimilis Necrotizing Fasciitis. Journal of Infectious Diseases, 217(2):270-279.

Sabin, Caroline A; Ryom, Lene; d'Arminio Monforte, Antonella; Hatleberg, Camilla I; Pradier, Christian; El-Sadr, Wafaa M; Kirk, Ole; Weber, Rainer; Phillips, Andrew N; Mocroft, Amanda; Bonnet, Fabrice; Law, Matthew; De Wit, Stephane; Reiss, Peter; Lundgren, Jens D; D:A:D Study Group (2018). Abacavir use and risk of recurrent myocardial infarction: the D: A: D study. AIDS, 32(1):79-88.

Bertels, Frederic; Marzel, Alex; Leventhal, Gabriel; Mitov, Venelin; Fellay, Jacques; Günthard, Huldrych F; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Battegay, Manuel; Rauch, Andri; Cavassini, Matthias; Calmy, Alexandra; Bernasconi, Enos; Schmid, Patrick; Scherrer, Alexandra U; Müller, Viktor; Bonhoeffer, Sebastian; Kouyos, Roger; Regoes, Roland R; Swiss HIV Cohort Study (2018). Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T Cell Decline and Per-Parasite Pathogenicity. Molecular Biology and Evolution, 35(1):27-37.

BEEHIVE Collaboration; Wymant, Chris; et al; Fellay, Jacques; Günthard, Huldrych F; Kouyos, Roger; van Sighem, Ard; Reiss, Peter (2018). Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver. Virus Evolution, 4(1):vey007.

Grubhofer, Florian; ImamMD, Mohamed A; Wieser, Karl; Achermann, Yvonne; Meyer, Dominik C; Gerber, Christian (2018). Staged Revision With Antibiotic Spacers for Shoulder Prosthetic Joint Infections Yields High Infection Control. Clinical Orthopaedics and Related Research, 476(1):146-152.

Sekaggya-Wiltshire, Christine; Lamorde, Mohammed; Kiragga, Agnes N; Dooley, Kelly E; Kamya, Moses R; Kambugu, Andrew; Fehr, Jan; Manabe, Yukari C; Castelnuovo, Barbara (2018). The utility of pharmacokinetic studies for the evaluation of exposure-response relationships for standard dose anti-tuberculosis drugs. Tuberculosis, 108:77-82.

Abela, Irene A; Murer, Christian; Schuurmans, Macé M; Schmitt, Juergen W; Muller, Frabci; Imkamp, Frank; Mueller, Nicolas J; Benden, Christian (2018). A cluster of scedosporiosis in lung transplant candidates and recipients: the Zurich experience and review of the literature. Transplant Infectious Disease, 20(1):e12792.

Brozy, Johannes; Schlaepfer, Erika; Mueller, Christina K S; Rochat, Mary-Aude; Rampini, Silvana K; Myburgh, Renier; Raum, Tobias; Kufer, Peter; Baeuerle, Patrick A; Muenz, Markus; Speck, Roberto F (2018). Antiviral Activity of HIV gp120-Targeting Bispecific T Cell Engager Antibody Constructs. Journal of Virology, 92(14):1-13.

Swiss HIV Cohort Study; Oxford IBD Cohort Investigators; Kurioka, Ayako; Cosgrove, Cormac; Simoni, Yannick; van Wilgenburg, Bonnie; Geremia, Alessandra; Björkander, Sophia; Sverremark-Ekström, Eva; Thurnheer, Christine; Günthard, Huldrych F; Khanna, Nina; Walker, Lucy Jane; Arancibia-Cárcamo, Carolina V; Newell, Evan W; Willberg, Christian B; Klenerman, Paul; et al (2018). CD161 defines a functionally distinct subset of pro-inflammatory natural killer cells. Frontiers in Immunology, 9:486.

Caniglia, Ellen C; Phillips, Andrew; Porter, Kholoud; Sabin, Caroline A; Winston, Alan; Logan, Roger; Gill, John; Vandenhende, Marie-Anne; Barger, Diana; Lodi, Sara; Moreno, Santiago; Arribas, José Ramón; Pacheco, Antonio; Cardoso, Sandra W; Chrysos, George; Gogos, Charalabos; Abgrall, Sophie; Costagliola, Dominique; Meyer, Laurence; Seng, Remonie; van Sighem, Ard; Reiss, Peter; Muga, Roberto; Hoyos, Santiago Pérez; Braun, Dominique; Hauser, Christoph; Barrufet, Pilar; Leyes, Maria; Tate, Janet; Justice, Amy; Hernán, Miguel A (2018). Commonly prescribed antiretroviral therapy regimens and incidence of AIDS-defining neurological conditions. Journal of Acquired Immune Deficiency Syndromes, 77(1):102-109.

Marzel, Alex. Computational and molecular analyses of HIV epidemiology in Switzerland: from quantifying transmission and coinfections to behavioral determinants of health. 2018, University of Zurich, Faculty of Science.

Matt, Ulrich; Selchow, Petra; Molin, M Dal; Strommer, S; Sharif, O; Schilcher, K; Andreoni, F; Stenzinger, A; Zinkernagel, A S; Zeitlinger, M; Sander, P; Nemeth, J (2018). Corrigendum to 'Chloroquine enhances the antimycobacterial activity of isoniazid and pyrazinamide by reversing inflammation-induced macrophage efflux' [The International Journal of Antimicrobial Agents 50/1 (2017) 55-62]. International Journal of Antimicrobial Agents, 51(1):122.

Liechti, Thomas; Kadelka, Claus; Ebner, Hanna; Friedrich, Nikolas; Kouyos, Roger D; Gunthard, Huldrych F; Trkola, Alexandra (2018). Development of a high-throughput bead based assay system to measure HIV-1 specific immune signatures in clinical samples. Journal of Immunological Methods, 454:48-58.

Poljak, M; Akova, M; Friedrich, A W; Rodríguez-Baño, J; Sanguinetti, M; Tacconelli, E; Zinkernagel, A (2018). ESCMID-an international Europe-based society committed to fostering cross-border collaboration and education to improve patient care. Clinical Microbiology and Infection, 24(1):1-2.

Lodi, Sara; Günthard, Huldrych F; Dunn, David; Garcia, Federico; Logan, Roger; Jose, Sophie; Bucher, Heiner C; Scherrer, Alexandra U; Schneider, Marie-Paule; Egger, Matthias; Glass, Tracy R; Reiss, Peter; van Sighem, Ard; Boender, T Sonia; Phillips, Andrew N; Porter, Kholoud; Hawkins, David; Moreno, Santiago; Monge, Susana; Paraskevis, Dimitrios; Simeon, Metallidis; Vourli, Georgia; Sabin, Caroline; Hernán, Miguel A; HIV-CAUSAL Collaboration* (2018). Effect of immediate initiation of antiretroviral treatment on the risk of acquired HIV drug resistance. AIDS, 32(3):327-335.

Braun, Dominique L; Marzel, Alex; Steffens, Daniela; Schreiber, Peter W; Grube, Christina; Scherrer, Alexandra U; Kouyos, Roger D; Günthard, Huldrych F; Swiss HIV Cohort Study (2018). High rates of subsequent asymptomatic STIs and risky sexual behavior in patients initially presenting with primary HIV-1 infection. Clinical Infectious Diseases, 66(5):735-742.

Stocker, Alina; Theus, Christoph; Boggian, Katia; Mueller, Nicolas J; Fleisch, Felix; Fehr, Thomas (2018). Hohe Inzidenz von Varizella-Zoster-Meningoenzephalitiden in Graubünden im Jahr 2014. Praxis, 107(7):363-371.

Salazar-Vizcaya, L; Kouyos, R D; Fehr, J; Braun, D; Estill, J; Bernasconi, E; Delaloye, J; Stöckle, M; Schmid, P; Rougemont, M; Wandeler, G; Günthard, H F; Keiser, O; Rauch, A; Swiss HIV Cohort Study (2018). On the potential of a short-term intensive intervention to interrupt HCV transmission in HIV-positive men who have sex with men: A mathematical modelling study. Journal of Viral Hepatitis, 25(1):10-18.

Anagnostopoulos, Alexia; Bossard, Daniel Andreas; Ledergerber, Bruno; Zingg, Patrick O; Zinkernagel, Annelies S; Gerber, Christian; Achermann, Yvonne (2018). Perioperative antibiotic prophylaxis has no effect on time to positivity and proportion of positive samples: a cohort study of 64 Cutibacterium acnes bone and joint infections. Journal of Clinical Microbiology, 56(2):e01576-17.

van der Kooi, Tjallie; Sax, Hugo; Pittet, Didier; van Dissel, Jaap; van Benthem, Birgit; Walder, Bernhard; Cartier, Vanessa; Clack, Lauren; de Greeff, Sabine; Wolkewitz, Martin; Hieke, Stefanie; Boshuizen, Hendriek; van de Kassteele, Jan; Van den Abeele, Annemie; PROHIBIT consortium; et al (2018). Prevention of hospital infections by intervention and training (PROHIBIT): results of a pan-European cluster-randomized multicentre study to reduce central venous catheter-related bloodstream infections. Intensive Care Medicine, 44(1):48-60.

Achermann, Yvonne; Liu, Jared; Zbinden, Reinhard; Zingg, Patrick O; Anagnostopoulos, Alexia; Barnard, Emma; Sutter, Reto; Li, Huiying; McDowell, Andrew; Zinkernagel, Annelies S (2018). Propionibacterium avidum - a virulent pathogen causing hip periprosthetic joint infection. Clinical Infectious Diseases, 66(1):54-63.

Wolfensberger, A; Meier, A H; Kuster, S P; Mehra, T; Meier, M-T; Sax, H (2018). Should International Classification of Diseases codes be used to survey hospital-acquired pneumonia? Journal of Hospital Infection, 99(1):81-84.

Abbas, M; Aghayev, E; Troillet, Nicolas; Eisenring, Marie-Christine; Kuster, S P; Widmer, A F; Harbarth, Stephan; SwissNoso (2018). Temporal trends and epidemiology of Staphylococcus aureus surgical site infection in the Swiss surveillance network: a cohort study. Journal of Hospital Infection, 98(2):118-126.

Saigi-Morgui, Núria; Quteineh, Lina; Bochud, Pierre-Yves; Crettol, Severine; Kutalik, Zoltán; Mueller, Nicolas J; Binet, Isabelle; Van Delden, Christian; Steiger, Jürg; Mohacsi, Paul; Dufour, Jean-francois; Soccal, Paola M; Pascual, Manuel; Eap, Chin B (2017). Genetic and clinic predictors of new onset diabetes mellitus after transplantation. Pharmacogenomics Journal:Epub ahead of print.

Böni, Christian; Al-Sheikh, Mayss; Hasse, Barbara; Eberhard, Roman; Kohler, Philipp; Hasler, Pascal W; Erb, Stefan; Hoffmann, Matthias; Barthelmes, Daniel; Zweifel, Sandrine A (2017). Multimodal imaging of choroidal lesions in disseminated mycobacterium chimaera infection after cardiothoracic surgery. Retina:Epub ahead of print.

Wensing, Annemarie M; Calvez, Vincent; Günthard, Huldrych F; Johnson, Victoria A; Paredes, Roger; Pillay, Deenan; Shafer, Robert W; Richman, Douglas D (2017). 2017 Update of the Drug Resistance Mutations in HIV-1. Topics in Antiviral Medicine, 24(4):132-133.

Seidl, Kati; Leemann, Michèle; Palheiros Marques, Miguel; Rachmühl, Carole; Leimer, Nadja; Andreoni, Federica; Achermann, Yvonne; Zinkernagel, Annelies S (2017). High level methicillin resistance correlates with reduced Staphylococcus aureus endothelial cell damage. International Journal of Medical Microbiology : IJMM, 307(1):11-20.

Kwizera, Richard; Parkes-Ratanshi, Rosalind; Page, Iain D; Sekaggya-Wiltshire, Christine; Musaazi, Joseph; Fehr, Jan; Castelnuovo, Barbara; Kambugu, Andrew; Denning, David W (2017). Elevated Aspergillus-specific antibody levels among HIV infected Ugandans with pulmonary tuberculosis. BMC Pulmonary Medicine, 17(1):149.

Bruggmann, Philip; Blach, Sarah; Deltenre, Pierre; Fehr, Jan; Kouyos, Roger; Lavanchy, Daniel; Müllhaupt, Beat; Rauch, Andri; Razavi, Homie; Schmid, Patrick; Semela, David; Stoeckle, Marcel; Negro, Franco (2017). Hepatitis C virus dynamics among intravenous drug users suggest that an annual treatment uptake above 10% would eliminate the disease by 2030. Swiss Medical Weekly, 147:w14543.

Lodi, Sara; Costagliola, Dominique; Sabin, Caroline A; Del Amo, Julia; Logan, Roger; Abgrall, Sophie; Reiss, Peter; van Sighem, Ard; Jose, Sophie; Bucher, Heiner C; Kovari, Helen; Ambrosioni, Juan; Pantazis, Nikos; Dabis, Francois; Vandenhende, Marie-Anne; Meyer, Laurence; Seng, Rémonie; Gill, M John; Phillips, Andrew N; Porter, Kholoud; Unspecified; Muga, Roberto; Tate, Janet; Justice, Amy; et al (2017). Effect of Immediate Initiation of Antiretroviral Treatment in HIV-Positive Individuals Aged 50 Years or Older. Journal of Acquired Immune Deficiency Syndromes, 76(3):311-318.

Hampel, Benjamin; Kusejko, K; Braun, D L; Harrison-Quintana, J; Kouyos, Roger; Fehr, J (2017). Assessing the need for a pre-exposure prophylaxis programme using the social media app Grindr®. HIV Medicine, 18(10):772-776.

Boyd, Mark A; Mocroft, Amanda; Ryom, Lene; Monforte, Antonella d'Arminio; Sabin, Caroline; El-Sadr, Wafaa M; Hatleberg, Camilla Ingrid; De Wit, Stephane; Weber, Rainer; Fontas, Eric; Phillips, Andrew; Bonnet, Fabrice; Reiss, Peter; Lundgren, Jens; Law, Matthew (2017). Cardiovascular disease (CVD) and chronic kidney disease (CKD) event rates in HIV-positive persons at high predicted CVD and CKD risk: a prospective analysis of the D:A:D observational study. PLoS Medicine, 14(11):e1002424.

Lysenko, Veronika; McHugh, Donal; Behrmann, Lena; Rochat, Mary-Aude; Wilk, Christian M; Kovtonyuk, Larisa V; Bourquin, Jean-Pierre; Münz, Christian; Manz, Markus G; Speck, Roberto F; Theocharides, Alexandre P (2017). Humanised mouse models for haematopoiesis and infectious diseases. Swiss Medical Weekly, 147:w14516.

Wang, Qing; De Luca, Andrea; Smith, Colette; Zangerle, Robert; Sambatakou, Helen; Bonnet, Fabrice; Smit, Colette; Schommers, Philipp; Thornton, Alicia; Berenguer, Juan; Peters, Lars; Spagnuolo, Vincenzo; Ammassari, Adriana; Antinori, Andrea; Roldan, Eugenia Quiros; Mussini, Cristina; Miro, Jose M; Konopnicki, Deborah; Fehr, Jan; Campbell, Maria A; Termote, Monique; Bucher, Heiner C; Hepatitis Coinfection and Non Hodgkin Lymphoma project team for (2017). Chronic hepatitis B and C virus infection and risk for non-hodgkin lymphoma in HIV-infected patients: a cohort study. Annals of Internal Medicine, 166(1):9-17.

AIDS-defining Cancer Project Working Group for IeDEA; COHERE (2017). Comparison of Kaposi Sarcoma Risk in Human Immunodeficiency Virus-Positive Adults Across 5 Continents: A Multiregional Multicohort Study. Clinical Infectious Diseases, 65(8):1316-1326.

Lewandowska, Dagmara Wanda; Zagordi, Osvaldo; Geissberger, Fabienne-Desirée; Kufner, Verena; Schmutz, Stefan; Böni, Jürg; Metzner, Karin J; Trkola, Alexandra; Huber, Michael (2017). Correction to: Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples. Microbiome, 5(1):137.

Leboeuf, C; Wilk, S; Achermann, R; Binet, I; Golshayan, D; Hadaya, K; Hirzel, C; Hoffmann, M; Huynh-Do, U; Koller, M T; Manuel, O; Mueller, N J; Mueller, T F; Schaub, Stefan; van Delden, C; Weissbach, F H; Hirsch, H H; Swiss Transplant Cohort Study (2017). BK polyomavirus-specific 9mer CD8 T cell responses correlate with clearance of BK viremia in kidney transplant recipients: first report from the Swiss Transplant Cohort Study. American Journal of Transplantation, 17(10):2591-2600.

Kuster, Stefan P; Eisenring, Marie-Christine; Sax, Hugo; Troillet, Nicolas; SwissNoso (2017). Structure, Process, and Outcome Quality of Surgical Site Infection Surveillance in Switzerland. Infection Control and Hospital Epidemiology, 38(10):1172-1181.

Sekaggya-Wiltshire, Christine; Castelnuovo, Barbara; von Braun, Amrei; Musaazi, Joseph; Muller, Daniel; Buzibye, Allan; Gutteck, Ursula; Henning, Lars; Ledergerber, Bruno; Corti, Natascia; Lamorde, Mohammed; Fehr, Jan; Kambugu, Andrew (2017). Cohort profile of a study on outcomes related to tuberculosis and antiretroviral drug concentrations in Uganda: design, methods and patient characteristics of the SOUTH study. BMJ Open, 7(9):e014679.

Swiss HIV Cohort Study; Turk, Teja; Bachmann, Nadine; Kadelka, Claus; Böni, Jürg; Yerly, Sabine; Aubert, Vincent; Klimkait, Thomas; Battegay, Manuel; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Furrer, Hansjakob; Hoffmann, Matthias; Günthard, Huldrych F; Kouyos, Roger D; et al (2017). Assessing the danger of self-sustained HIV epidemics in heterosexuals by population based phylogenetic cluster analysis. eLife, 6:e28721.

Elzi, Luigia; Erb, Stefan; Furrer, Hansjakob; Cavassini, Matthias; Calmy, Alexandra; Vernazza, Pietro; Günthard, Huldrych; Bernasconi, Enos; Battegay, Manuel; Swiss HIV Cohort Study (2017). Adverse events of raltegravir and dolutegravir. AIDS, 31(13):1853-1858.

Blaser, Nello; Bertisch, Barbara; Kouyos, Roger D; Calmy, Alexandra; Bucher, Heiner C; Cavassini, Matthias; Estill, Janne; Keiser, Olivia; Egger, Matthias; Swiss HIV Cohort Study (2017). Impact of screening and antiretroviral therapy on anal cancer incidence in HIV-positive MSM. AIDS, 31(13):1859-1866.

Lauche, Romy; Wayne, Peter M; Fehr, Johannes; Stumpe, Christoph; Dobos, Gustav; Cramer, Holger (2017). Does postural awareness contribute to exercise-induced improvements in neck pain intensity? A secondary analysis of a randomized controlled trial evaluating Tai Chi and neck exercises. Spine, 42(16):1195-1200.

Lewandowska, Dagmara W; Zagordi, Osvaldo; Geissberger, Fabienne-Desirée; Kufner, Verena; Schmutz, Stefan; Böni, Jürg; Metzner, Karin J; Trkola, Alexandra; Huber, Michael (2017). Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples. Microbiome, 5(1):94.

Wilk, C Matthias; Weber, Isabel; Seidl, Kati; Rachmühl, Carole; Holzmann-Bürgel, Anne; Müller, Antonia M S; Kuster, Stefan P; Schanz, Urs; Zinkernagel, Annelies S (2017). Impact of oral gut decontamination on staphylococcus aureus colonization in patients undergoing allogeneic hematopoietic stem cell transplantation. International Journal of Antimicrobial Agents, 50(6):726-729.

van Ingen, Jakko; Kohl, Thomas A; Kranzer, Katharina; Hasse, Barbara; Keller, Peter M; et al (2017). Global outbreak of severe Mycobacterium chimaera disease after cardiac surgery: a molecular epidemiological study. Lancet Infectious Diseases, 17(10):1033-1041.

Sculier, Delphine; Gayet-Ageron, Angèle; Battegay, Manuel; Cavassini, Matthias; Fehr, Jan; Hirzel, Cedric; Schmid, Patrick; Bernasconi, Enos; Calmy, Alexandra; Swiss HIV Cohort Study (2017). Rilpivirine use in the Swiss HIV cohort study: a prospective cohort study. BMC Infectious Diseases, 17(1):476.

Tarr, Philip E; Kovari, Helen (2017). Another statin option in HIV. The lancet. HIV., 4(7):e278-e279.

Matt, U; Selchow, P; Dal Molin, M; Strommer, S; Sharif, O; Schilcher, K; Andreoni, F; Stenzinger, A; Zinkernagel, A S; Zeitlinger, M; Sander, P; Nemeth, J (2017). Chloroquine enhances the antimycobacterial activity of isoniazid and pyrazinamide by reversing inflammation-induced macrophage efflux. International Journal of Antimicrobial Agents, 50(1):55-62.

BEEHIVE Collaboration; Kouyos, Roger; Fellay, Jacques; Günthard, Huldrych F; et al (2017). Correction: Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe. PLoS Biology, 15(7):e1002608.

Kok, Yik Lim; Ciuffi, Angela; Metzner, Karin J (2017). Unravelling HIV-1 latency, one cell at a time. Trends in Microbiology, 25(11):932-941.

Damonti, Lauro; Erard, Véronique; Garbino, Jorge; Schrenzel, Jacques; Zimmerli, Stefan; Mühlethaler, Konrad; Imhof, Alexander; Zbinden, Reinhard; Fehr, Jan; Boggian, Katia; Bruderer, Thomas; Flückiger, Ursula; Frei, Reno; Orasch, Christina; Conen, Anna; Khanna, Nina; Bregenzer, Thomas; Bille, Jacques; Lamoth, Frédéric; Marchetti, Oscar; Bochud, Pierre-Yves; Fungal Infection Network of Switzerland (FUNGINOS) (2017). Catheter retention as a consequence rather than a cause of unfavorable outcome in candidemia. Intensive Care Medicine, 43(6):935-939.

Audigé, Annette; Rochat, Mary-Aude; Li, Duo; Ivic, Sandra; Fahrny, Audrey; Muller, Christina K S; Gers-Huber, Gustavo; Myburgh, Renier; Bredl, Simon; Schlaepfer, Erika; Scherrer, Alexandra U; Kuster, Stefan P; Speck, Roberto F (2017). Long-term leukocyte reconstitution in NSG mice transplanted with human cord blood hematopoietic stem and progenitor cells. BMC Immunology, 18(1):28.

Bachmann, Nadine; Turk, Teja; Kadelka, Claus; Marzel, Alex; Shilaih, Mohaned; Böni, Jürg; Aubert, Vincent; Klimkait, Thomas; Leventhal, Gabriel E; Günthard, Huldrych F; Kouyos, Roger; Swiss HIV Cohort Study (2017). Parent-offspring regression to estimate the heritability of an HIV-1 trait in a realistic setup. Retrovirology, 14(1):33.

Kolios, Antonios G A; Cozzio, Antonio; Zinkernagel, Annelies S; French, Lars E; Kündig, Thomas M (2017). Cutaneous Corynebacterium Infection Presenting with Disseminated Skin Nodules and Ulceration. Case Reports in Dermatology, 9(2):8-12.

Borges, Álvaro H; Hoy, Jennifer F; Florence, Eric; Sedlacek, Dalibor; Stellbrink, Hans-Jürgen; Uzdaviniene, Vilma; Tomazic, Janez; Gargalianos-Kakolyris, Panagiotis; Schmid, Patrick; Orkin, Chloe; Pedersen, Court; Leen, Clifford; Pradier, Christian; Mulcahy, Fiona; Ridolfo, Anna Lisa; Staub, Therese; Maltez, Fernando; Weber, Rainer; Flamholc, Leo; Kyselyova, Galina; Lundgren, Jens D; Mocroft, Amanda; EuroSIDA Study Group (2017). Antiretrovirals, fractures, and osteonecrosis in a large international HIV cohort. Clinical Infectious Diseases, 64(10):1413-1421.

Shilaih, Mohaned; Angst, Daniel C; Marzel, Alex; Bonhoeffer, Sebastian; Günthard, Huldrych F; Kouyos, Roger D (2017). Antibacterial effects of antiretrovirals, potential implications for microbiome studies in HIV. Antiviral Therapy, 23(1):91-94.

Akers, Isabel; Weber, Rainer; Sax, Hugo; Böni, Jürg; Trkola, Alexandra; Kuster, Stefan (2017). Influence of time to diagnosis of severe influenza on antibiotic use, length of stay, isolation precautions, and mortality: a retrospective study. Influenza and Other Respiratory Viruses, 11(4):337-344.

Erb, Stefan; Keller, Peter M; Masseray, Virginie; Hirt-Minkows, Patricia; Georgalis, Argyrios; Egli, Adrian; Hopfer, Helmut; Hasler, Pascal W; Zweifel, Sandrine; Wilson, Patrick; Graber, Peter; Eckstein, Friedrich S; Schlegel, Matthias; Sax, Hugo; Widmer, Andreas; Hasse, Barbara (2017). B-Symptome nach Herzoperation. Swiss Medical Forum, 17(19):434-437.

Fankhauser, Christian Daniel; Hermanns, Thomas; Hasse, Barbara; Rancic, Zoran (2017). Excessive Wound Fluid Discharge during Retroperitoneal Negative Pressure Wound Therapy. Annals of Vascular Surgery, 43:314.e1-314.e3.

Brandenberg, Oliver F; Magnus, Carsten; Rusert, Peter; Günthard, Huldrych F; Regoes, Roland Robert; Trkola, Alexandra (2017). Predicting HIV-1 transmission and antibody neutralization efficacy in vivo from stoichiometric parameters. PLoS Pathogens, 13(5):e1006313.

Béguelin, Charles; Friolet, Nicole; Moradpour, Darius; Sahli, Roland; Suter-Riniker, Franziska; Lüthi, Alexander; Cavassini, Matthias; Günthard, Huldrych F; Battegay, Manuel; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Atkinson, Andrew; Rauch, Andri; Wandeler, Gilles; Swiss HIV Cohort Study (2017). Impact of Tenofovir on Hepatitis Delta Virus Replication in the Swiss Human Immunodeficiency Virus Cohort Study. Clinical Infectious Diseases, 64(9):1275-1278.

Clack, Lauren; Sax, Hugo (2017). Annals for hospitalists inpatient notes - human factors engineering and inpatient care-new ways to solve old problems. Annals of Internal Medicine, 166(8):HO2-HO3.

Marzel, A; Shilaih, Mohaned; Turk, T; Campbell, Nottania K; Yang, Wan-Lin; Böni, J; Yerly, S; Klimkait, T; Aubert, V; Furrer, H; Calmy, A; Battegay, M; Cavassini, M; Bernasconi, E; Schmid, P; Metzner, K J; Gunthard, H F; Kouyos, R D; Swiss HIV Cohort Study (2017). Mining for pairs: shared clinic visit dates identify steady HIV-positive partnerships. HIV Medicine, 18(9):667-676.

Sekaggya-Wiltshire, C; von Braun, A; Scherrer, A U; Manabe, Y C; Buzibye, A; Muller, D; Ledergerber, B; Gutteck, U; Corti, N; Kambugu, A; Byakika-Kibwika, P; Lamorde, M; Castelnuovo, B; Fehr, J; Kamya, M R (2017). Anti-TB drug concentrations and drug-associated toxicities among TB/HIV-coinfected patients. Journal of Antimicrobial Chemotherapy, 72(4):1172-1177.

Rhee, Soo-Yon; Varghese, Vici; Holmes, Susan P; Van Zyl, Gert U; Steegen, Kim; Boyd, Mark A; Cooper, David A; Nsanzimana, Sabin; Saravanan, Shanmugam; Charpentier, Charlotte; de Oliveira, Tulio; Etiebet, Mary-Ann A; Garcia, Federico; Goedhals, Dominique; Gomes, Perpetua; Günthard, Huldrych F; Hamers, Raph L; Hoffmann, Christopher J; Hunt, Gillian; Jiamsakul, Awachana; Kaleebu, Pontiano; Kanki, Phyllis; Kantor, Rami; Kerschberger, Bernhard; Marconi, Vincent C; D'amour Ndahimana, Jean; Ndembi, Nicaise; Ngo-Giang-Huong, Nicole; Rokx, Casper; Santoro, Maria M; et al (2017). Mutational Correlates of Virological Failure in Individuals Receiving a WHO-Recommended Tenofovir-Containing First-Line Regimen: An International Collaboration. EBioMedicine, 18:225-235.

Rasmussen, David A; Kouyos, Roger; Günthard, Huldrych F; Stadler, Tanja (2017). Phylodynamics on local sexual contact networks. PLoS Computational Biology, 13(3):e1005448.

COHERE (2017). Is response to anti-hepatitis C virus treatment predictive of mortality in hepatitis C virus/HIV-positive patients? AIDS, 31(5):661-668.

Bragge, Peter; Grimshaw, Jeremy M; Lokker, Cynthia; Colquhoun, Heather; AIMD Writing/Working Group (2017). AIMD - a validated, simplified framework of interventions to promote and integrate evidence into health practices, systems, and policies. BMC Medical Research Methodology, 17(1):38.

Simonetta, Federico; Pradier, Amandine; Masouridi-Levrat, Stavroula; van Delden, Christian; Giostra, Emiliano; Morard, Isabelle; Müller, Nicolas; Müllhaupt, Beat; Valli, Piero V; Semmo, Nasser; Seebach, Jörg; Chalandon, Yves; Kaiser, Laurent; Roosnek, Eddy; Swiss Transplant Cohort Study (2017). Torque teno virus load and acute rejection after orthotopic liver transplantation. Transplantation, 101(7):e219-e221.

Kang, Mi-Sun; Lim, Hae-Soon; Oh, Jong-Suk; Lim, You-Jin; Wuertz-Kozak, Karin; Harro, Janette M; Shirtliff, Mark E; Achermann, Yvonne (2017). Antimicrobial activity of Lactobacillus salivarius and Lactobacillus fermentum against Staphylococcus aureus. FEMS Pathogens and Disease, 75(2):ftx009.

Beauparlant, David; Rusert, Peter; Magnus, Carsten; Kadelka, Claus; Weber, Jacqueline; Uhr, Therese; Zagordi, Osvaldo; Oberle, Corinna; Duenas-Decamp, Maria J; Clapham, Paul R; Metzner, Karin J; Günthard, Huldrych F; Trkola, Alexandra (2017). Delineating CD4 dependency of HIV-1: Adaptation to infect low level CD4 expressing target cells widens cellular tropism but severely impacts on envelope functionality. PLoS Pathogens, 13(3):e1006255.

Schilcher, Katrin; Dengler Haunreiter, Vanina; Zinkernagel, Annelies S (2017). Reply to "Modulatory Effects of a Subinhibitory Concentration of Clindamycin in Community-Acquired Methicillin-Resistant Staphylococcus aureus Strains of Sequence Type 30". Antimicrobial Agents and Chemotherapy:61:3.

Oberle, Corinna S; Magnus, Carsten; Joos, Beda; Rusert, Peter; Beauparlant, David; Kouyos, Roger; Trkola, Alexandra; Metzner, Karin J; Günthard, Huldrych F (2017). Reply to correspondence 'Conserved signatures indicate HIV-1 transmission is under strong selection and thus is not a "stochastic" process' by Gonzalez et al., Retrovirology 2017. Retrovirology, 14(1):14.

Nemeth, Johannes; Vongrad, Valentina; Metzner, Karin J; Strouvelle, Victoria P; Weber, Rainer; Pedrioli, Patrick G A; Aebersold, Ruedi; Günthard, Huldrych F; Collins, Ben C (2017). In vivo and in vitro proteome analysis of Human Immunodeficiency Virus (HIV)-1-infected, human CD4(+) T cells. Molecular & Cellular Proteomics, 16(4 suppl 1):S108-S123.

Combes, Jean-Damien; Clifford, Gary M; Egger, Matthias; Cavassini, Matthias; Hirsch, Hans H; Hauser, Christoph; Calmy, Alexandra; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F; Franceschi, Silvia; Waterboer, Tim; Scherrer, Alexandra U; Swiss HIV Cohort Study (2017). Human papillomavirus antibody response following HAART initiation among MSM. AIDS, 31(4):561-569.

Kovari, Helen; Rauch, Andri; Kouyos, Roger; Rougemont, Mathieu; Cavassini, Matthias; Schmid, Patrick; Stöckle, Marcel; Bernasconi, Enos; Weber, Rainer; Ledergerber, Bruno; Swiss HIV Cohort Study (2017). Hepatitis C Infection and the Risk of Non-Liver-Related Morbidity and Mortality in HIV-Infected Persons in the Swiss HIV Cohort Study. Clinical Infectious Diseases, 64(4):490-497.

Han, Sang Hoon; Kumar, D; Ferreira, V H; Egli, A; Hirsch, H H; Weisser, M; Garzoni, C; van Delden, C; Bochud, P Y; Manuel, O; Meylan, P; Boggian, K; Husain, S; Mueller, N J; Humar, A; Swiss Transplant Cohort Study (2017). Human microRNA responses predict cytomegalovirus replication following solid organ transplantation. Journal of Infectious Diseases, 215(4):537-546.

Leimer, Nadja; Zinkernagel, Annelies S (2017). Reply to Perez and Patel. Journal of Infectious Diseases, 215(3):490-491.

Huber, M; Metzner, K J; Geissberger, F D; Shah, C; Leemann, C; Klimkait, T; Böni, J; Trkola, A; Zagordi, O (2017). MinVar: A rapid and versatile tool for HIV-1 drug resistance genotyping by deep sequencing. Journal of Virological Methods, 240:7-13.

Pulcini, Céline; Tebano, Gianpiero; Mutters, Nico T; Tacconelli, Evelina; Cambau, Emmanuelle; Kahlmeter, Gunnar; Jarlier, Vincent; EUCIC-ESGAP-EUCAST Selective Reporting Working Group (2017). Selective reporting of antibiotic susceptibility test results in European countries: an ESCMID cross-sectional survey. International Journal of Antimicrobial Agents, 49(2):162-166.

Gueler, Aysel; Moser, André; Calmy, Alexandra; Günthard, Huldrych F; Bernasconi, Enos; Furrer, Hansjakob; Fux, Christoph A; Battegay, Manuel; Cavassini, Matthias; Vernazza, Pietro; Zwahlen, Marcel; Egger, Matthias; Swiss HIV Cohort Study (2017). Life expectancy in HIV-positive persons in Switzerland: matched comparison with general population. AIDS, 31(3):427-436.

Andreoni, Federica; Zürcher, Claudia; Tarnutzer, Andrea; Schilcher, Katrin; Neff, Andrina; Keller, Nadia; Marques Maggio, Ewerton; Poyart, Claire; Schuepbach, Reto A; Zinkernagel, Annelies S (2017). Clindamycin affects group a streptococcus virulence factors and improves clinical outcome. Journal of Infectious Diseases, 215(2):269-277.

von Braun, Amrei; Sekaggya-Wiltshire, Christine; Scherrer, Alexandra U; Magambo, Brian; Kambugu, Andrew; Fehr, Jan; Castelnuovo, Barbara (2017). Early virological failure and HIV drug resistance in Ugandan adults co-infected with tuberculosis. AIDS Research and Therapy, 14(1):1.

Schäfer, Juliane; Young, Jim; Calmy, Alexandra; Nicca, Dunja; Hasse, Barbara; Brun Del Re, Claudia; Cavassini, Matthias; Bernasconi, Enos; Schmidt-Trucksäss, Arno; Bucher, Heiner C; Swiss HIV Cohort Study (2017). High prevalence of physical inactivity among patients from the Swiss HIV cohort study. AIDS Care, 29(8):1056-1061.

Cecchinato, Valentina; Bernasconi, Enos; Speck, Roberto F; Proietti, Michele; Sauermann, Ulrike; D'Agostino, Gianluca; Danelon, Gabriela; Rezzonico Jost, Tanja; Grassi, Fabio; Raeli, Lorenzo; Schöni-Affolter, Franziska; Stahl-Hennig, Christiane; Uguccioni, Mariagrazia; Swiss HIV Cohort Study (2017). Impairment of CCR6+ and CXCR3+ th cell migration in HIV-1 infection is rescued by modulating actin polymerization. Journal of Immunology, 198(1):184-195.

Shilaih, Mohaned; Marzel, Alex; Braun, Dominique L; Scherrer, Alexandra U; Kovari, Helen; Young, Jim; Calmy, Alexandra; Darling, Katharine; Battegay, Manuel; Hoffmann, Matthias; Bernasconi, Enos; Thurnheer, Maria C; Günthard, Huldrych F; Kouyos, Roger D; Swiss HIV Cohort Study (2017). Factors associated with syphilis incidence in the HIV-infected in the era of highly active antiretrovirals. Medicine, 96(2):e5849.

Sommerstein, Rami; Schreiber, Peter W; Diekema, Daniel J; Edmond, Michael B; Hasse, Barbara; Marschall, Jonas; Sax, Hugo (2017). Mycobacterium chimaera outbreak associated with heater-cooler devices: piecing the puzzle together. Infection Control and Hospital Epidemiology, 38(1):103-108.

Clack, Lauren; Scotoni, Manuela; Wolfensberger, Aline; Sax, Hugo (2017). "First-person view" of pathogen transmission and hand hygiene - use of a new head-mounted video capture and coding tool. Antimicrobial Resistance and Infection Control, 6:108.

Weber, Rainer; Fontana, A; Schaer, D J (2017). 22 Status febrilis und systemische Entzündung bei Infektionen und immunologischen Krankheiten. In: Battegay, Edouard. Differenzialdiagnose Innerer Krankheiten : vom Symptom zur Diagnose. Stuttgart: Georg Thieme Verlag, 652-756.

Ivic, Sandra. A gene therapy approach: gene engineering of HIV resistant cells using the humanized mouse model. 2017, University of Zurich, Faculty of Medicine.

Bayard, Cornelia; Ledergerber, Bruno; Flepp, Markus; Lecompte, Thanh; Moulin, Estelle; Hoffmann, Matthias; Weber, Rainer; Staehelin, Cornelia; Di Benedetto, Caroline; Fux, Christoph A; Tarr, Philip E; Hasse, Barbara; Swiss HIV Cohort Study (2017). Associations Between Antiretroviral Treatment and Avascular Bone Necrosis: The Swiss HIV Cohort Study. Open Forum Infectious Diseases, 4(4):ofx177.

McLaws, M L; Sax, H (2017). Behavior and Hand Hygiene. In: Pittet, D; Boyce, J M; Allegranzi, B. Hand hygiene : a handbook for medical professionals. Chichester: Wyley Blackwell, 115-122.

Quteineh, L; Bochud, P-Y; Golshayan, D; Crettol, S; Venetz, J-P; Manuel, O; Kutalik, Z; Treyer, A; Lehmann, R; Mueller, N J; Binet, I; van Delden, C; Steiger, J; Mohacsi, P; Dufour, J-F; Soccal, P M; Pascual, M; Eap, C B; Swiss Transplant Cohort Study (2017). CRTC2 polymorphism as a risk factor for the incidence of metabolic syndrome in patients with solid organ transplantation. Pharmacogenomics Journal, 17(1):69-75.

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von Braun, Amrei. Early virological failure and HIV drug resistance in Ugandan adults co-infected with tuberculosis. 2017, University of Zurich, Faculty of Medicine.

Colombo, Carlo; Merz, Brigitte; Sax, Hugo (2017). Einsatz von Sicherheitsinstrumenten im Gesundheitswesen in der Schweiz - Ergebnisse einer Umfrage in Spitälern. Suva Medical:62-76.

Gran, Jon Michael; Hoff, Rune; Røysland, Kjetil; Ledergerber, Bruno; Young, James; Aalen, Odd O (2017). Estimating the treatment effect on the treated under time-dependent confounding in an application to the Swiss HIV Cohort Study. Journal of the Royal Statistical Society: Series C, 67(1):103-125.

Hoenigl, Martin; Braun, Dominique L; Kouyos, Roger; Günthard, Huldrych F; Little, Susan J (2017). Evaluation of the predictive potential of the short acute retroviral syndrome severity score for HIV-1 disease progression in individuals with acute HIV infection. Journal of Acquired Immune Deficiency Syndromes, 74(4):e114-e117.

Fröhlich, Maryna; Fehr, Jan; Sulser, Tullio; Eberli, Daniel; Mortezavi, Ashkan (2017). Extraction strings for ureteric stents: is there an increased risk for urinary tract infections? Surgical Infections, 18(8):936-940.

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Rochat, Mary-Aude. HIV latency, in vitro and in vivo studies. 2017, University of Zurich, Faculty of Medicine.

Sax, H; Wolfensberger, A (2017). Handlungsweisendes Informationssystem für Infektionsprävention – ein Ansatz in Human Factors Engineering. Informationsschrift Koordinierter Sanitätsdienst, 1(17):11-14.

Béguelin, Charles; Moradpour, Darius; Sahli, Roland; Suter-Riniker, Franziska; Lüthi, Alexander; Cavassini, Matthias; Günthard, Huldrych F; Battegay, Manuel; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Braun, Dominique; Furrer, Hansjakob; Rauch, Andri; Wandeler, Gilles (2017). Hepatitis delta-associated mortality in HIV/HBV-coinfected patients. Journal of Hepatology, 66(2):297-303.

Judd, A; Ledergerber, B; et al (2017). Higher rates of triple-class virological failure in perinatally HIV-infected teenagers compared with heterosexually infected young adults in Europe. HIV Medicine, 18(3):171-180.

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Weber, Isabel. Impact of oral gut decontamination on Staphylococ-cus aureus colonization in patients undergoing al-logeneic hematopoietic stem cell transplantation. 2017, University of Zurich, Faculty of Medicine.

Ghisla, Virginia; Scherrer, Alexandra U; Nicca, Dunja; Braun, Dominique L; Fehr, Jan S (2017). Incidence of hepatitis C in HIV positive and negative men who have sex with men 2000-2016: a systematic review and meta-analysis. Infection, 45(3):309-321.

Del Amo, Julia (2017). Inequalities by educational level in response to combination antiretroviral treatment and survival in HIV-positive men and women in Europe (1996-2013): a collaborative cohort study. AIDS, 31(2):253-262.

Bonani, Marco; Frey, Diana; de Rougemont, Olivier; Mueller, Nicolas J; Mueller, Thomas F; Graf, Nicole; Wüthrich, Rudolf P (2017). Infections in de novo kidney transplant recipients treated with the RANKL inhibitor denosumab. Transplantation, 101(9):2139-2145.

Akers, Isabel. Influence of time to diagnosis of severe influenza on antibiotic use, length of stay, isolation precau-tions and mortality: a retrospective study. 2017, University of Zurich, Faculty of Medicine.

Weber, R (2017). Intestinal coccidia and microsporidia. In: Cohen, J; Powderly, WG; Opal, SM. Infectious Diseases. London: Elsevier, 1734-1743.

Storr, J; Sax, H (2017). Marketing hand hygiene. In: Pittet, D; Boyce, J M; Allegranzi, B. Hand hygiene : a handbook for medical professionals. Chichester: Wyley Blackwell, 180-184.

Lewandowska, Dagmara W; Schreiber, Peter W; Schuurmans, Macé M; Ruehe, Bettina; Zagordi, Osvaldo; Bayard, Cornelia; Greiner, Michael; Geissberger, Fabienne D; Capaul, Riccarda; Zbinden, Andrea; Böni, Jürg; Benden, Christian; Mueller, Nicolas J; Trkola, Alexandra; Huber, Michael (2017). Metagenomic sequencing complements routine diagnostics in identifying viral pathogens in lung transplant recipients with unknown etiology of respiratory infection. PLoS ONE, 12(5):e0177340.

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Sax, H; Allegranzi, B; Pittet, D (2017). My Five Moments for Hand Hygiene. In: Pittet, D; Boyce, J M; Allegranzi, B. Hand hygiene : a handbook for medical professionals. Chichester: Wyley Blackwell, 134-143.

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Schuurmans, Macé M; Hartwig, Jonas; Hamp, P; Murer, C; Robinson, Cecile; Mueller, N J; Benden, Christian (2017). P152 Diagnostic discrepancies between rapid and standard polymerase chain reaction laboratory tests for influenza virus detection in nasopharyngeal swabs from symptomatic lung transplant recipients. Chest, 151(5):A50.

Husmann, Lars; Hasse, Barbara (2017). PET-CT bei vaskulärem Graft-Infekt. Zentralblatt für Chirurgie, 142(05):502-505.

Stewardson, Andrew James; Sax, Hugo (2017). Performance feedback. In: Pittet, D; Boyce, J M; Allegranzi, B. Hand hygiene : a handbook for medical professionals. Chichester: Wyley Blackwell, 172-179.

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Shilaih, Mohaned Mohamed Ahmed Ali. Systems Study of HIV Transmission, Treatment, Coinfections, and Pathogenesis. 2017, University of Zurich, Faculty of Science.

Birger, Ruthie B; Le, Thuy-My; Kouyos, Roger D; Grenfell, Bryan T; Hallett, Timothy B (2017). The impact of HCV therapy in a high HIV-HCV prevalence population: a modeling study on people who inject drugs in Ho Chi Minh City, Vietnam. PLoS ONE, 12(5):e0177195.

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Achermann, Yvonne. Diagnostic, Prevention, and Treatment of Periprosthetic Joint Infections (PJI). 2016, University of Zurich, Faculty of Medicine.

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Günthard, Huldrych F; Scherrer, Alexandra U (2016). HIV-1 subtype C, tenofovir, and the relationship with treatment failure and drug resistance. Journal of Infectious Diseases, 214(9):1289-1291.

Furrer, Alexandra Laurentia. Genotypic and phenotypic characterization of resistant and persistant Staphylococcus aureus. 2016, University of Zurich, Faculty of Medicine.

Mertz, Dominik; Fadel, Shaza A; Lam, Po-Po; Tran, Dat; Srigley, Jocelyn A; Asner, Sandra A; Science, Michelle; Kuster, Stefan P; Nemeth, Johannes; Johnstone, Jennie; Ortiz, Justin R; Loeb, Mark (2016). Herd effect from influenza vaccination in non-healthcare settings: a systematic review of randomised controlled trials and observational studies. Eurosurveillance, 21(42):2.

Bossard, Daniel Andreas; Ledergerber, Bruno; Zingg, Patrick O; Gerber, Christian; Zinkernagel, Annelies S; Zbinden, Reinhard; Achermann, Yvonne (2016). Optimal length of cultivation time for isolation of propionibacterium acnes in suspected bone and joint infections is more than 7 days. Journal of Clinical Microbiology, 54(12):3043-3049.

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Schilcher, Katrin; Andreoni, Federica; Dengler Haunreiter, Vanina; Seidl, Kati; Hasse, Barbara; Zinkernagel, Annelies S (2016). Modulation of staphylococcus aureus biofilm matrix by subinhibitory concentrations of clindamycin. Antimicrobial Agents and Chemotherapy, 60(10):5957-5967.

Schreiber, Peter W; Kuster, Stefan P; Hasse, Barbara; Bayard, Cornelia; Rüegg, Christian; Kohler, Philipp; Keller, Peter M; Bloemberg, Guido V; Maisano, Francesco; Bettex, Dominique; Halbe, Maximilian; Sommerstein, Rami; Sax, Hugo (2016). Reemergence of Mycobacterium chimaera in Heater-Cooler Units despite Intensified Cleaning and Disinfection Protocol. Emerging Infectious Diseases, 22(10):1830-1833.

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Rusert, Peter; Kouyos, Roger D; Kadelka, Claus; Ebner, Hanna; Schanz, Merle; Huber, Michael; Braun, Dominique L; Hozé, Nathanael; Scherrer, Alexandra; Magnus, Carsten; Weber, Jacqueline; Uhr, Therese; Cippa, Valentina; Thorball, Christian W; Kuster, Herbert; Cavassini, Matthias; Bernasconi, Enos; Hoffmann, Matthias; Calmy, Alexandra; Battegay, Manuel; Rauch, Andri; Yerly, Sabine; Aubert, Vincent; Klimkait, Thomas; Böni, Jürg; Fellay, Jacques; Regoes, Roland R; Günthard, Huldrych F; Trkola, Alexandra (2016). Determinants of HIV-1 broadly neutralizing antibody induction. Nature Medicine, 22(11):1260-1267.

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Gjærde, Lars I; Shepherd, Leah; Jablonowska, Elzbieta; Lazzarin, Adriano; Rougemont, Mathieu; Darling, Katharine; Battegay, Manuel; Braun, Dominique; Martel-Laferriere, Valerie; Lundgren, Jens D; Rockstroh, Jürgen K; Gill, John; Rauch, Andri; Mocroft, Amanda; Klein, Marina B; Peters, Lars (2016). Trends in Incidences and Risk Factors for Hepatocellular Carcinoma and Other Liver Events in HIV and Hepatitis C Virus-coinfected Individuals From 2001 to 2014: A Multicohort Study. Clinical Infectious Diseases, 63(6):821-829.

Oberle, Corinna S; Joos, Beda; Rusert, Peter; Campbell, Nottania K; Beauparlant, David; Kuster, Herbert; Weber, Jacqueline; Schenkel, Corinne D; Scherrer, Alexandra U; Magnus, Carsten; Kouyos, Roger; Rieder, Philip; Niederöst, Barbara; Braun, Dominique L; Pavlovic, Jovan; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Trkola, Alexandra; Metzner, Karin J; Günthard, Huldrych F (2016). Tracing HIV-1 transmission: envelope traits of HIV-1 transmitter and recipient pairs. Retrovirology, 13(1):62.

Leimer, Nadja. Intracellular Localization, Bacterial Persistence, Small Colony Variants and Antibiotic Resistance Influence Staphylococcus aureus Pathophysiology. 2016, University of Zurich, Faculty of Medicine.

Stewardson, Andrew James; Sax, Hugo; Gayet-Ageron, Angèle; Touveneau, Sylvie; Longtin, Yves; Zingg, Walter; Pittet, Didier (2016). Enhanced performance feedback and patient participation to improve hand hygiene compliance of health-care workers in the setting of established multimodal promotion: a single-centre, cluster randomised controlled trial. Lancet Infectious Diseases, 16(12):1345-1355.

Vetter, Luzia; Schuepfer, Guido; Kuster, Stefan P; Rossi, Marco (2016). A Hospital-wide Outbreak of Serratia marcescens, and Ishikawa's "Fishbone" Analysis to Support Outbreak Control. Quality management in health care, 25(1):1-7.

Montazeri, Hesam; Kuipers, Jack; Kouyos, Roger; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Günthard, Huldrych F; Beerenwinkel, Niko (2016). Large-scale inference of conjunctive Bayesian networks. Bioinformatics, 32(17):i727-i735.

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Shilaih, Mohaned; Marzel, Alex; Scherrer, Alexandra U; Braun, Dominique L; Kovari, Helen; Rougemont, Mathieu; Darling, Katharine; Battegay, Manuel; Hoffmann, Matthias; Bernasconi, Enos; Hirzel, Cedric; Günthard, Huldrych F; Kouyos, Roger D (2016). Dually Active HIV/HBV Antiretrovirals as Protection Against Incident Hepatitis B Infections: Potential for Prophylaxis. Journal of Infectious Diseases, 214(4):599-606.

Martinez-Picado, Javier; McLaren, Paul J; Erkizia, Itziar; Martin, Maureen P; Benet, Susana; Rotger, Margalida; Dalmau, Judith; Ouchi, Dan; Wolinsky, Steven M; Penugonda, Sudhir; Günthard, Huldrych F; Fellay, Jacques; Carrington, Mary; Izquierdo-Useros, Nuria; Telenti, Amalio (2016). Identification of Siglec-1 null individuals infected with HIV-1. Nature Communications, 7:12412.

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Kovari Kramer, Helen. Hepatische Morbidität und Mortalität HIV-positiver Personen ohne Hepatitis C und B Virus-Infektion. 2016, University of Zurich, Faculty of Medicine.

Scherrer, Alexandra U; Bloemberg, Guido; Zbinden, Reinhard; Zinkernagel, Annelies S; Fuchs, Claudio; Frauenfelder, Sandra; Rancic, Zoran; Mayer, Dieter; Hasse, Barbara (2016). Prosthetic vascular graft infections: bacterial cultures from negative-pressure-wound-therapy foams do not improve diagnostics. Journal of Clinical Microbiology, 54(8):2190-2193.

Maldarelli, Grace A; Piepenbrink, Kurt H; Scott, Alison J; Freiberg, Jeffrey A; Song, Yang; Achermann, Yvonne; Ernst, Robert K; Shirtliff, Mark E; Sundberg, Eric J; Donnenberg, Michael S; von Rosenvinge, Erik C (2016). Type IV pili promote early biofilm formation by Clostridium difficile. FEMS Pathogens and Disease, 74(6):ftw061.

Stuehler, Claudia; Bernardini, Claudia; Elzi, Luigia; Stoeckle, Marcel; Zimmerli, Stefan; Furrer, Hansjakob; Günthard, Huldrych F; Leibundgut-Landmann, Salomé; Battegay, Manuel; Khanna, Nina (2016). Immune recovery in HIV-infected patients after Candida esophagitis is impaired despite long-term antiretroviral therapy. AIDS, 30(12):1923-1933.

Woytschak, Janine; Keller, Nadia; Krieg, Carsten; Impellizzieri, Daniela; Thompson, Robert W; Wynn, Thomas A; Zinkernagel, Annelies S; Boyman, Onur (2016). Type 2 Interleukin-4 Receptor Signaling in Neutrophils Antagonizes Their Expansion and Migration during Infection and Inflammation. Immunity, 45(1):172-184.

Ryom, Lene; Lundgren, Jens Dilling; De Wit, Stéphane; Kovari, Helen; Reiss, Peter; Law, Matthew; El-Sadr, Wafa; Monforte, Antonella D'Arminio; Mocroft, Amanda; Smith, Colette; Fontas, Eric; Dabis, Francois; Phillips, Andrew; Sabin, Caroline; D:A:D Study Group (2016). Use of antiretroviral therapy and risk of end-stage liver disease and hepatocellular carcinoma in HIV-positive persons. AIDS, 30(11):1731-1743.

Uchiyama, Satoshi; Keller, Nadia; Schlaepfer, Erika; Grube, Christina; Schuepbach, Reto A; Speck, Roberto F; Zinkernagel, Annelies S (2016). Interferon α-enhanced clearance of group a streptococcus despite neutropenia. Journal of Infectious Diseases, 214(2):321-328.

Günthard, Huldrych F; Saag, Michael S; Benson, Constance A; del Rio, Carlos; Eron, Joseph J; Gallant, Joel E; Hoy, Jennifer F; Mugavero, Michael J; Sax, Paul E; Thompson, Melanie A; Gandhi, Rajesh T; Landovitz, Raphael J; Smith, Davey M; Jacobsen, Donna M; Volberding, Paul A (2016). Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2016 Recommendations of the International Antiviral Society-USA Panel. JAMA : the Journal of the American Medical Association, 316(2):191-210.

Héquet, Delphine; Kralidis, Georg; Carrel, Thierry; Cusini, Alexia; Garzoni, Christian; Hullin, Roger; Meylan, Pascal R; Mohacsi, Paul; Mueller, Nicolas J; Ruschitzka, Frank; Tozzi, Piergiorgio; van Delden, Christian; Weisser, Maja; Wilhelm, Markus J; Pascual, Manuel; Manuel, Oriol (2016). Ventricular assist devices as bridge to heart transplantation: impact on post-transplant infections. BMC Infectious Diseases, 16:321.

Sax, Hugo; Kuster, Stefan P; Tehrany, Yassaman Alipour; Ren, Ruoxi; Uçkay, Ilker; Agostinho, Americo; Stephan, François; Wachsmuth, Maud; Walder, Bernard; Hoffmeyer, Pierre; Pittet, Didier (2016). Eight-year sustainability of a successful intervention to prevent urinary tract infection: A mixed-methods study. American Journal of Infection Control, 44(7):820-824.

Niedrig, David; Maechler, Sarah; Hoppe, Liesa; Corti, Natascia; Kovari, Helen; Russmann, Stefan (2016). Drug safety of macrolide and quinolone antibiotics in a tertiary care hospital: administration of interacting co-medication and QT prolongation. European Journal of Clinical Pharmacology, 72(7):859-67.

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Zahnd, Cindy; Salazar-Vizcaya, Luisa; Dufour, Jean-François; Müllhaupt, Beat; Wandeler, Gilles; Kouyos, Roger; Estill, Janne; Bertisch, Barbara; Rauch, Andri; Keiser, Olivia (2016). Modelling the impact of deferring HCV treatment on liver-related complications in HIV coinfected men who have sex with men. Journal of Hepatology, 65(1):26-32.

Stucki, David; Ballif, Marie; Egger, Matthias; Furrer, Hansjakob; Altpeter, Ekkehardt; Battegay, Manuel; Droz, Sara; Bruderer, Thomas; Coscolla, Mireia; Borrell, Sonia; Zürcher, Kathrin; Janssens, Jean-Paul; Calmy, Alexandra; Mazza Stalder, Jesica; Jaton, Katia; Rieder, Hans L; Pfyffer, Gaby E; Siegrist, Hans H; Hoffmann, Matthias; Fehr, Jan; Dolina, Marisa; Frei, Reno; Schrenzel, Jacques; Böttger, Erik C; Gagneux, Sebastien; Fenner, Lukas (2016). Standard genotyping overestimates transmission of mycobacterium tuberculosis among immigrants in a low-incidence country. Journal of Clinical Microbiology, 54(7):1862-1870.

Hatleberg, Camilla Ingrid; Ryom, Lene; El-Sadr, Wafaa; Smith, Colette; Weber, Rainer; Reiss, Peter; Fontas, Eric; Dabis, Francois; Law, Matthew; Monforte, Antonella d'Arminio; De Wit, Stephane; Mocroft, Amanda; Phillips, Andrew; Lundgren, Jens D; Sabin, Caroline (2016). Improvements over time in short-term mortality following myocardial infarction in HIV-positive individuals. AIDS, 30(10):1583-1596.

Shilaih, Mohaned; Marzel, Alex; Yang, Wan Lin; Scherrer, Alexandra U; Schüpbach, Jörg; Böni, Jürg; Yerly, Sabine; Hirsch, Hans H; Aubert, Vincent; Cavassini, Matthias; Klimkait, Thomas; Vernazza, Pietro L; Bernasconi, Enos; Furrer, Hansjakob; Günthard, Huldrych F; Kouyos, Roger (2016). Genotypic Resistance Tests Sequences Reveal the Role of Marginalized Populations in HIV-1 Transmission in Switzerland. Scientific Reports, 6:27580.

Schilcher, Katrin. Antibiotic-mediated modulation of Staphylococcus aureus virulence factors. 2016, University of Zurich, Faculty of Medicine.

Sommerstein, Rami; Rüegg, Christian; Kohler, Philipp; Bloemberg, Guido; Kuster, Stefan P; Sax, Hugo (2016). Transmission of mycobacterium chimaera from heater-cooler units during cardiac surgery despite an ultraclean air ventilation system. Emerging Infectious Diseases, 22(6):1008-1013.

Hofmann, Patrick; Hombach, Michael; Seifert, Burkhardt; Schuurmans, Macé M; Bürgi, Urs; Isenring, Bruno; Mueller, Nicolas J; Kohler, Malcolm; Benden, Christian; Huber, Lars C (2016). Isolation of Stenotrophomonas maltophilia in asymptomatic Lung Transplant Recipients: Effects of Treatment on Eradication and Outcome. Clinical Transplantation, 30(8):857-863.

Scherrer, Alexandra U; von Wyl, Viktor; Yang, Wan-Lin; Kouyos, Roger D; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Cavassini, Matthias; Battegay, Manuel; Furrer, Hansjakob; Calmy, Alexandra; Vernazza, Pietro; Bernasconi, Enos; Günthard, Huldrych F (2016). Emergence of acquired HIV-1 drug resistance almost stopped in Switzerland: A 15-year prospective cohort analysis. Clinical Infectious Diseases, 62(10):1310-1317.

Thiébaut, Rodolphe; Jarne, Ana; Routy, Jean-Pierre; Sereti, Irini; Fischl, Margaret; Ive, Prudence; Speck, Roberto F; D'Offizi, Gianpiero; Casari, Salvatore; Commenges, Daniel; Foulkes, Sharne; Natarajan, Ven; Croughs, Thérèse; Delfraissy, Jean-François; Tambussi, Guiseppe; Levy, Yves; Lederman, Michael M (2016). Repeated cycles of recombinant human interleukin 7 in HIV-infected patients with low CD4 t-cell reconstitution on antiretroviral therapy: results of 2 phase II multicenter studies. Clinical Infectious Diseases, 62(9):1178-1185.

De Luca, Andrea; Flandre, Philippe; Dunn, David; Zazzi, Maurizio; Wensing, Annemarie; Santoro, Maria Mercedes; Günthard, Huldrych F; Wittkop, Linda; Kordossis, Theodoros; Garcia, Federico; Castagna, Antonella; Cozzi-Lepri, Alessandro; Churchill, Duncan; De Wit, Stéphane; Brockmeyer, Norbert H; Imaz, Arkaitz; Mussini, Cristina; Obel, Niels; Perno, Carlo Federico; Roca, Bernardino; Reiss, Peter; Schülter, Eugen; Torti, Carlo; van Sighem, Ard; Zangerle, Robert; Descamps, Diane (2016). Improved darunavir genotypic mutation score predicting treatment response for patients infected with HIV-1 subtype B and non-subtype B receiving a salvage regimen. Journal of Antimicrobial Chemotherapy, 71(5):1352-1360.

Leierer, Gisela; Grabmeier-Pfistershammer, Katharina; Steuer, Andrea; Sarcletti, Mario; Geit, Maria; Haas, Bernhard; Taylor, Ninon; Kanatschnig, Manfred; Rappold, Michaela; Ledergerber, Bruno; Zangerle, Robert (2016). A single quantifiable viral load is predictive of virological failure in Human Immunodeficiency Virus (HIV)-infected patients on combination antiretroviral therapy: The Austrian HIV cohort study. Open Forum Infectious Diseases, 3(2):ofw089.

Junier, Thomas; Rotger, Margalida; Biver, Emmanuel; Ledergerber, Bruno; Barceló, Catalina; Bartha, Istvan; Kovari, Helen; Schmid, Patrick; Fux, Christoph; Bernasconi, Enos; Brun Del Re, Claudia; Weber, Rainer; Fellay, Jacques; Tarr, Philip E (2016). Contribution of genetic background and clinical risk factors to low-trauma fractures in human immunodeficiency virus (HIV)-positive persons: the swiss HIV cohort study. Open Forum Infectious Diseases, 3(2):ofw101.

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Fehr, Jan; Nicca, Dunja; Goffard, Jean-Christophe; Haerry, David; Schlag, Michael; Papastamopoulos, Vasileios; Hoepelman, Andy; Skoutelis, Athanasius; Diazaraque, Ruth; Ledergerber, Bruno (2016). Reasons for not starting antiretroviral therapy in HIV-1-infected individuals: a changing landscape. Infection, 44(4):521-529.

Nakagawa, Fumiyo; van Sighem, Ard; Thiebaut, Rodolphe; Smith, Colette; Ratmann, Oliver; Cambiano, Valentina; Albert, Jan; Amato-Gauci, Andrew; Bezemer, Daniela; Campbell, Colin; Commenges, Daniel; Donoghoe, Martin; Ford, Deborah; Kouyos, Roger; Lodwick, Rebecca; Lundgren, Jens; Pantazis, Nikos; Pharris, Anastasia; Quinten, Chantal; Thorne, Claire; Touloumi, Giota; Delpech, Valerie; Phillips, Andrew (2016). A Method to Estimate the Size and Characteristics of HIV-positive Populations Using an Individual-based Stochastic Simulation Model. Epidemiology, 27(2):247-256.

Cadosch, Dominique; Abel zur Wiesch, Pia; Kouyos, Roger; Bonhoeffer, Sebastian (2016). The Role of Adherence and Retreatment in De Novo Emergence of MDR-TB. PLoS Computational Biology, 12(3):e1004749.

Shepherd, L; Borges, Áh; Ledergerber, B; Domingo, P; Castagna, A; Rockstroh, J; Knysz, B; Tomazic, J; Karpov, I; Kirk, O; Lundgren, J; Mocroft, A (2016). Infection-related and -unrelated malignancies, HIV and the aging population. HIV Medicine, 17(8):590-600.

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Kok, Yik-Lim. Examination of HIV-1 integration sites to delineate determinants HIV-1 pathogenesis. 2016, University of Zurich, Faculty of Science.

Bossard, Daniel Andreas. Optimal length of cultivation time for isolation of Propionibacterium acnes in suspected bone and joint infections is more than 7 days. 2016, University of Zurich, Faculty of Medicine.

Seifert, David; Di Giallonardo, Francesca; Töpfer, Armin; Singer, Jochen; Schmutz, Stefan; Günthard, Huldrych F; Beerenwinkel, Niko; Metzner, Karin J (2016). A comprehensive analysis of primer IDs to study heterogeneous HIV-1 populations. Journal of Molecular Biology, 428(1):238-250.

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Meloni, Monica. Cure of tuberculosis despite serum concentrations of antituberculosis drugs below published reference ranges: A retrospective analysis. 2016, University of Zurich, Faculty of Medicine.

Aouri, Manel; Barcelo, Catalina; Ternon, Béatrice; Cavassini, Matthias; Anagnostopoulos, Alexia; Yerly, Sabine; Hugues, Henry; Vernazza, Pietro; Günthard, Huldrych F; Buclin, Thierry; Telenti, Amalio; Rotger, Margalida; Decosterd, Laurent A (2016). in vivo profiling and distribution of known and novel phase I and phase II metabolites of efavirenz in plasma, urine, and cerebrospinal fluid. Drug Metabolism and Disposition, 44(1):151-161.

St John, Elizabeth P; Simen, Birgitte B; Turenchalk, Gregory S; Braverman, Michael S; Abbate, Isabella; Aerssens, Jeroen; Bouchez, Olivier; Gabriel, Christian; Izopet, Jacques; Meixenberger, Karolin; Di Giallonardo, Francesca; Schlapbach, Ralph; Paredes, Roger; Sakwa, James; Schmitz-Agheguian, Gudrun G; Thielen, Alexander; Victor, Martin; Metzner, Karin J; Däumer, Martin P (2016). A follow-up of the multicenter collaborative study on HIV-1 drug resistance and tropism testing using 454 ultra deep pyrosequencing. PLoS ONE, 11(1):e0146687.

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Villandre, Luc; Stephens, David A; Labbe, Aurelie; Günthard, Huldrych F; Kouyos, Roger; Stadler, Tanja (2016). Assessment of overlap of phylogenetic transmission clusters and communities in simple sexual contact networks: applications to HIV-1. PLoS ONE, 11(2):e0148459.

Jeger, Victor; Hasse, Barbara; Hildenbrand, Florian (2016). CME: Bakterielle Meningitis bei Erwachsenen. Praxis, 105(23):1353-1360.

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TenoRes Study Group, xx (2016). Global epidemiology of drug resistance after failure of WHO recommended first-line regimens for adult HIV-1 infection: a multicentre retrospective cohort study. Lancet Infectious Diseases, 16(5):565-575.

Zingg, Patrick O; Achermann, Yvonne (2016). Herausforderungen in der Diagnostik der periprothetischen Infektion. Praxis, 105(17):1025-1031.

Clifford, Gary M; Franceschi, Silvia; Keiser, Olivia; Schöni-Affolter, Franziska; Lise, Mauro; Dehler, Silvia; Levi, Fabio; Mousavi, Mohsen; Bouchardy, Christine; Wolfensberger, Aline; Darling, Katharine E; Staehelin, Cornelia; Bertisch, Barbara; Kuenzli, Esther; Bernasconi, Enos; Pawlita, Michael; Egger, Matthias (2016). Immunodeficiency and the risk of cervical intra-epithelial neoplasia 2/3 and cervical cancer: A nested case-control study in the Swiss HIV Cohort Study. International Journal of Cancer, 138(7):1732-1740.

Tarr, Philip; Notter, Julia; Sydow, Véronique; Wirz, Sebastian; Wallnöfer, Astrid; Vollgraff, Michael; Neumayr, Andreas; Berger, Christoph; Battegay, Manuel; Fehr, Jan; Jackson, Yves-Lauren; Posfay-Barbe, Klara; Durieux, Sophie; Ritz, Nicole; Staehelin, Cornelia; Boillat-Blanco, Noémie; Fuchs, Simon; Martin, Brian (2016). Impfungen bei erwachsenen Flüchtlingen. Swiss Medical Forum, 16(49-50):1075-1079.

Notter, Julia; Labhardt, Niklaus; Hatz, Christoph; Wallnöfer, Astrid; Vollgraff, Michael; Ritz, Nicole; Wirz, Sebastian; Berger, Christoph; Battegay, Manuel; Neumayr, Andreas; Fehr, Jan; Jackson, Yves-Laurent; Posfay-Barbe, Klara; Durieux, Sophie; Lanz, Christian; Staehelin, Cornelia; Boillat-Blanco, Noémie; Fuchs, Simon; Martin, Brian; Tarr, Philip (2016). Infektionen bei erwachsenen Flüchtlingen. Swiss Medical Forum, 16(49-50):1067-1074.

Sabin, Caroline A; Reiss, Peter; Ryom, Lene; Phillips, Andrew N; Weber, Rainer; Law, Matthew; Fontas, Eric; Mocroft, Amanda; de Wit, Stephane; Smith, Colette; Dabis, Francois; d'Arminio Monforte, Antonella; El-Sadr, Wafaa; Lundgren, Jens D (2016). Is there continued evidence for an association between abacavir usage and myocardial infarction risk in individuals with HIV? A cohort collaboration. BMC Medicine, 14(1):61.

Kok, Yik Lim; Vongrad, Valentina; Shilaih, Mohaned; Di Giallonardo, Francesca; Kuster, Herbert; Kouyos, Roger; Günthard, Huldrych F; Metzner, Karin J (2016). Monocyte-derived macrophages exhibit distinct and more restricted HIV-1 integration site repertoire than CD4(+) T cells. Scientific Reports, 6:24157.

Leimer, Nadja; Rachmühl, Carole; Palheiros Marques, Miguel; Bahlmann, Anna Sophie; Furrer, Alexandra; Eichenseher, Fritz; Seidl, Kati; Matt, Ulrich; Loessner, Martin J; Schuepbach, Reto A; Zinkernagel, Annelies S (2016). Nonstable staphylococcus aureus small-colony variants are induced by low pH and sensitized to antimicrobial therapy by phagolysosomal alkalinization. Journal of Infectious Diseases, 213(2):305-313.

Aebi-Popp, K; Kouyos, R; Bertisch, B; Staehelin, C; Rudin, C; Hoesli, I; Stoeckle, M; Bernasconi, E; Cavassini, M; Grawe, C; Lecompte, T D; Rickenbach, M; Thorne, C; Martinez de Tejada, B; Fehr, J (2016). Postnatal retention in HIV care: insight from the Swiss HIV Cohort Study over a 15-year observational period. HIV Medicine, 17(4):280-288.

Rodger, Alison J; Cambiano, Valentina; Bruun, Tina; Vernazza, Pietro; Collins, Simon; van Lunzen, Jan; Corbelli, Giulio Maria; Estrada, Vicente; Geretti, Anna Maria; Beloukas, Apostolos; Asboe, David; Viciana, Pompeyo; Gutiérrez, Félix; Clotet, Bonaventura; Pradier, Christian; Gerstoft, Jan; Weber, Rainer; Westling, Katarina; Wandeler, Gilles; Prins, Jan M; Rieger, Armin; Stoeckle, Marcel; Kümmerle, Tim; Bini, Teresa; Ammassari, Adriana; Gilson, Richard; Krznaric, Ivanka; Ristola, Matti; Zangerle, Robert; Handberg, Pia; et al (2016). Sexual activity without condoms and risk of HIV transmission in serodifferent couples when the HIV-positive partner is using suppressive antiretroviral therapy. JAMA : the Journal of the American Medical Association, 316(2):171-182.

Achhra, A C; Mocroft, A; Reiss, P; Sabin, C; Ryom, L; de Wit, S; Smith, C J; d'Arminio Monforte, A; Phillips, A; Weber, R; Lundgren, J; Law, M G (2016). Short-term weight gain after antiretroviral therapy initiation and subsequent risk of cardiovascular disease and diabetes: the D:A:D study. HIV Medicine, 17(4):255-268.

Rampini, Silvana K; Zbinden, Andrea; Speck, Roberto F; Bloemberg, Guido V (2016). Similar efficacy of broad-range ITS PCR and conventional fungal culture for diagnosing fungal infections in non-immunocompromised patients. BMC Microbiology, 16(1):132.

Wandeler, Gilles; Kraus, David; Fehr, Jan; Conen, Anna; Calmy, Alexandra; Orasch, Christina; Battegay, Manuel; Schmid, Patrick; Bernasconi, Enos; Furrer, Hansjakob (2016). The J-curve in HIV: low and moderate alcohol intake predicts mortality but not the occurrence of major cardiovascular events. Journal of Acquired Immune Deficiency Syndromes, 71(3):302-309.

Nemeth, Johannes; Bernasconi, Enos; Heininger, Ulrich; Abbas, Mohamed; Nadal, David; Strahm, Carol; Erb, Stefan; Zimmerli, Stefan; Furrer, Hansjakob; Delaloye, Julie; Kuntzer, Thierry; Altpeter, Ekkehard; Sturzenegger, Mathias; Weber, Rainer (2016). Update of the Swiss guidelines on post-treatment Lyme disease syndrome. Swiss Medical Weekly, 146:w14353.

Saigi-Morgui, Núria; Quteineh, Lina; Bochud, Pierre-Yves; Crettol, Severine; Kutalik, Zoltán; Wojtowicz, Agnieszka; Bibert, Stéphanie; Beckmann, Sonja; Mueller, Nicolas J; Binet, Isabelle; van Delden, Christian; Steiger, Jürg; Mohacsi, Paul; Stirnimann, Guido; Soccal, Paola M; Pascual, Manuel; Eap, Chin B; Swiss Transplant Cohort Study (2016). Weighted genetic risk scores and prediction of weight gain in solid organ transplant populations. PLoS ONE, 11(10):e0164443.

Berger, Christoph; Manuel, Oriol; Müller, Nicolas (2016). Zytomegalie. Swiss Medical Forum, 16(32):635-638.

Cippà, Pietro E; Schiesser, Marc; Ekberg, Henrik; van Gelder, Teun; Mueller, Nicolas J; Cao, Claude A; Fehr, Thomas; Bernasconi, Corrado (2015). Risk Stratification for Rejection and Infection after Kidney Transplantation. Clinical Journal of the American Society of Nephrology, 10(12):2213-2220.

Martin-Gandul, C; Mueller, N J; Pascual, M; Manuel, O (2015). The impact of infection on chronic allograft dysfunction and allograft survival after solid organ transplantation. American Journal of Transplantation, 15(12):3024-3040.

Möllerherm, Helene; Neumann, Ariane; Schilcher, Katrin; Blodkamp, Stefanie; Zeitouni, Nathalie E; Dersch, Petra; Lüthje, Petra; Naim, Hassan Y; Zinkernagel, Annelies S; von Köckritz-Blickwede, Maren (2015). Yersinia enterocolitica-mediated degradation of neutrophil extracellular traps (NETs). FEMS Microbiology Letters, 362(23):fnv192.

Zingg, Walter; Holmes, Alison; Dettenkofer, Markus; Goetting, Tim; Secci, Federica; Clack, Lauren; Allegranzi, Benedetta; Magiorakos, Anna-Pelagia; Pittet, Didier (2015). Hospital organisation, management, and structure for prevention of health-care-associated infection: a systematic review and expert consensus. Lancet Infectious Diseases, 15(2):212-224.

Wensing, Annemarie M; Calvez, Vincent; Günthard, Huldrych F; Johnson, Victoria A; Paredes, Roger; Pillay, Deenan; Shafer, Robert W; Richman, Douglas D (2015). 2015 update of the drug resistance mutations in HIV-1. Topics in Antiviral Medicine, 23(4):132-141.

Denner, Joachim; Mueller, Nicolas J (2015). Preventing transfer of infectious agents. International Journal of Surgery, 23(Pt B):306-311.

Schaerer, V; Haubitz, S; Kovari, H; Ledergerber, B; Ambrosioni, J; Cavassini, M; Stoeckle, M; Schmid, P; Decosterd, L; Aouri, M; Böni, J; Günthard, H F; Furrer, H; Metzner, K J; Fehr, J; Rauch, A (2015). Protease inhibitors to treat hepatitis C in the Swiss HIV Cohort Study: high efficacy but low treatment uptake. HIV Medicine, 16(10):599-607.

Glass, Tracy R; Sterne, Jonathan A C; Schneider, Marie-Paule; De Geest, Sabina; Nicca, Dunja; Furrer, Hansjakob; Günthard, Huldrych F; Bernasconi, Enos; Calmy, Alexandra; Rickenbach, Martin; Battegay, Manuel; Bucher, Heiner C (2015). Self-reported nonadherence to antiretroviral therapy as a predictor of viral failure and mortality. AIDS, 29(16):2195-200.

Kohler, Philipp; Kuster, Stefan P; Bloemberg, Guido; Schulthess, Bettina; Frank, Michelle; Tanner, Felix C; Rössle, Matthias; Böni, Christian; Falk, Volkmar; Wilhelm, Markus J; Sommerstein, Rami; Achermann, Yvonne; Ten Oever, Jaap; Debast, Sylvia B; Wolfhagen, Maurice J H M; Brandon Bravo Bruinsma, George J; Vos, Margreet C; Bogers, Ad; Serr, Annerose; Beyersdorf, Friedhelm; Sax, Hugo; Böttger, Erik C; Weber, Rainer; van Ingen, Jakko; Wagner, Dirk; Hasse, Barbara (2015). Healthcare-associated prosthetic heart valve, aortic vascular graft, and disseminated Mycobacterium chimaera infections subsequent to open heart surgery. European Heart Journal, 36(40):2745-2753.

Young, Jim; Moodie, Erica E M; Abrahamowicz, Michal; Klein, Marina B; Weber, Rainer; Bucher, Heiner C (2015). Incomplete modeling of the effect of antiretroviral therapy on the risk of cardiovascular events. Clinical Infectious Diseases, 61(7):1206-1207.

Schuurmans, Macé M; Palheiros Marques, Miguel; Freitag, Lutz; Zinkernagel, Annelies S; Achermann, Yvonne (2015). Biofilm formation in a permanent tracheal stent implanted for twenty-five years. Respiration, 90(4):327-328.

Beeler, Patrick E; Kuster, Stefan P; Eschmann, Emmanuel; Weber, Rainer; Blaser, Jürg (2015). Earlier switching from intravenous to oral antibiotics owing to electronic reminders. International Journal of Antimicrobial Agents, 46(4):428-433.

Montazeri, Hesam; Günthard, Huldrych F; Yang, Wan-Lin; Kouyos, Roger; Beerenwinkel, Niko (2015). Estimating the dynamics and dependencies of accumulating mutations with applications to HIV drug resistance. Biostatistics, 16(4):713-726.

Salmon, S; Pittet, D; Sax, H; McLaws, M L (2015). The 'My five moments for hand hygiene' concept for the overcrowded setting in resource-limited healthcare systems. Journal of Hospital Infection, 91(2):95-99.

Lewandowska, Dagmara W; Zagordi, Osvaldo; Zbinden, Andrea; Schuurmans, Macé M; Schreiber, Peter; Geissberger, Fabienne-Desirée; Huder, Jon B; Böni, Jürg; Benden, Christian; Mueller, Nicolas J; Trkola, Alexandra; Huber, Michael (2015). Unbiased metagenomic sequencing complements specific routine diagnostic methods and increases chances to detect rare viral strains. Diagnostic Microbiology and Infectious Disease, 83(2):133-138.

von Braun, A; Sekaggya, C; Henning, L; Nakijoba, R; Kambugu, A; Fehr, J; Castelnuovo, B (2015). 'If at first you don't succeed, try again'. Looking beyond the initial results of a failed tuberculosis diagnosis. Public Health Action, 5(3):170-172.

Braun, Dominique L; Kouyos, Roger D; Balmer, Belinda; Grube, Christina; Weber, Rainer; Günthard, Huldrych F (2015). Frequency and spectrum of unexpected clinical manifestations of primary HIV-1 infection. Clinical Infectious Diseases, 61(6):1013-1021.

Kohler, Philipp; Schmidt, Axel J; Cavassini, Matthias; Furrer, Hansjakob; Calmy, Alexandra; Battegay, Manuel; Bernasconi, Enos; Ledergerber, Bruno; Vernazza, Pietro (2015). The HIV care cascade in Switzerland: reaching the UNAIDS/WHO targets for patients diagnosed with HIV. AIDS, 29(18):2509-2515.

Yang, Wan-Lin; Kouyos, Roger D; Scherrer, Alexandra U; Böni, Jürg; Shah, Cyril; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Hirzel, Cédric; Battegay, Manuel; Cavassini, Matthias; Bernasconi, Enos; Vernazza, Pietro; Held, Leonhard; Ledergerber, Bruno; Günthard, Huldrych F (2015). Assessing efficacy of different nucleos(t)ide backbones in NNRTI-containing regimens in the swiss HIV cohort study. Journal of Antimicrobial Chemotherapy:3323-3331.

Leuthard, Deborah; Berger, Christoph; Staubli, Georg; Nadal, David; Schmid, Sabine; Hamer, David; Weber, Rainer; Schlagenhauf, Patricia (2015). Management of children with travel-related illness evaluated in a pediatric emergency room. The Pediatric Infectious Disease Journal, 34(12):1279-1282.

Antinori, Andrea; Clarke, Amanda; Svedhem-Johansson, Veronika; Arribas, José R; Arenas-Pinto, Alejandro; Fehr, Jan; Gerstoft, Jan; Horban, Andrzej; Clotet, Bonaventura; Ripamonti, Diego; Girard, Pierre-Marie; Hill, Andrew M; Moecklinghoff, Christiane (2015). Week 48 efficacy and central nervous system analysis of darunavir/ritonavir monotherapy versus darunavir/ritonavir with two nucleoside analogues. AIDS, 29(14):1811-1820.

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Kaiser, P; Maggio, E M; Pfammatter, T; Misselwitz, B; Flury, S; Schneider, P M; Dutkowski, P; Breitenstein, S; Müllhaupt, B; Clavien, P A; Mueller, N J (2014). Histopathological evidence of invasive gastric mucormycosis after transarterial chemoembolization and liver transplantation. Infection, 42(4):779-83.

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Günthard, Huldrych F; Aberg, Judith A; Eron, Joseph J; Hoy, Jennifer F; Telenti, Amalio; Benson, Constance A; Burger, David M; Cahn, Pedro; Gallant, Joel E; Glesby, Marshall J; Reiss, Peter; Saag, Michael S; Thomas, David L; Jacobsen, Donna M; Volberding, Paul A (2014). Antiretroviral treatment of adult HIV infection: 2014 recommendations of the International Antiviral Society-USA Panel. JAMA : the Journal of the American Medical Association, 312(4):410-425.

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Moradigaravand, Danesh; Kouyos, Roger; Hinkley, Trevor; Haddad, Mojgan; Petropoulos, Christos J; Engelstädter, Jan; Bonhoeffer, Sebastian (2014). Recombination accelerates adaptation on a large-scale empirical fitness landscape in HIV-1. PLoS Genetics, 10(6):e1004439.

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Wang, Qing; Young, Jim; Bernasconi, Enos; Vernazza, Pietro; Calmy, Alexandra; Cavassini, Matthias; Furrer, Hansjakob; Fehr, Jan; Bucher, Heiner C; Battegay, Manuel (2014). Virologic and immunologic responses in treatment-naive patients to ritonavir-boosted atazanavir or efavirenz with a common backbone. HIV Clinical Trials, 15(3):92-103.

Vongrad, Valentina. Identification of mechanisms controlling and maintaining HIV-1 latency in vivo. 2014, University of Zurich, Faculty of Science.

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Scharer, Verena; Hafner, Roland; Ciurea, Adrian; Henning, Lars; Somoskovi, Akos; Weber, Rainer; Fehr, Jan (2014). Limitations of medicine:diagnosis and therapy of <<inflammatory>> back pain. Praxis, 103(6):337-340.

Avila, Dorita; Keiser, Olivia; Egger, Matthias; Kouyos, Roger; Böni, Juerg; Yerly, Sabine; Klimkait, Thomas; Vernazza, Pietro L; Aubert, Vincent; Rauch, Andri; Bonhoeffer, Sebastian; Guenthard, Huldrych F; Stadler, Tanja; Spycher, Ben D (2014). Social Meets Molecular: Combining Phylogenetic and Latent Class Analyses to Understand HIV-1 Transmission in Switzerland. American Journal of Epidemiology, 179(12):1514-1525.

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Bastidas, Sonia; Graw, Frederik; Smith, Miranda Z; Kuster, Herbert; Günthard, Huldrych F; Oxenius, Annette (2014). CD8+ T cells are activated in an antigen-independent manner in HIV-infected individuals. Journal of Immunology, 192(4):1732-1744.

Schuurmans, M M; Isenring, B D; Jungo, C; Boeni, J; Mueller, N J; Kohler, M; Benden, C (2014). Clinical features and outcomes of influenza infections in lung transplant recipients: a single-season cohort study. Transplant Infectious Disease, 16(3):430-439.

Kouyos, Roger D; Rauch, Andri; Böni, Jürg; Yerli, Sabome; Shah, Cyril; Aubert, Vincent; Klimkait, Thomas; Kovari, Helen; Calmy, Alexandra; Cavassini, Matthias; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Ledergerber, Bruno; Gunthard, Huldrych F (2014). Clustering of HCV coinfections on HIV phylogeny indicates domestic and sexual transmission of HCV. International Journal of Epidemiology, 43(3):887-896.

Di Giallonardo, Francesca. HIV-1 quasispecies analysis by next-generation sequencing to determine the mechanisms of viral evolution. 2014, University of Zurich, Faculty of Science.

Rasi, Manuela; Künzler-Heule, Patrizia; Schmid, Patrick; Semela, David; Bruggmann, Philip; Fehr, Jan; Saxer, Susi; Nicca, Dunja (2014). "Fighting an uphill battle": experience with the HCV triple therapy: a qualitative thematic analysis. BMC Infectious Diseases, 14:507.

Braun, Dominique L; Kouyos, Roger; Oberle, Corinna; Grube, Christina; Joos, Beda; Fellay, Jacques; McLaren, Paul J; Kuster, Herbert; Günthard, Huldrych F (2014). A novel acute retroviral syndrome severity score predicts the key surrogate markers for HIV-1 disease progression. PLoS ONE, 9(12):e114111.

Wolfensberger, A; Huber, M; Choschzick, M; Mueller, N J (2014). Abdominale Tuberkulose. Der Gastroenterologe, 9(4):372-377.

Braun, Julia; Held, Leonhard; Ledergerber, Bruno (2014). Accounting for baseline differences and measurement error in the analysis of change over time. Statistics in Medicine, 33(1):2-16.

Haas, Florian; Yamauchi, Kazuma; Murat, Monika; Bernasconi, Michele; Yamanaka, Noboru; Speck, Roberto F; Nadal, David (2014). Activation of NF-kappa B via endosomal toll-like receptor 7 (TLR7) or TLR9 suppresses murine herpesvirus 68 reactivation. Journal of Virology, 88(17):10002-10012.

Kovari, Helen; Michel, Simone; Tarr, Philip (2014). Altern HIV-positive Menschen schneller? Das „Metabolismus und Aging (M+A)“ Projekt der Schweizerischen HIV Kohortenstudie. Zürich, Schweiz: Aids-Hilfe Schweiz.

Simen, Birgitte B; Braverman, Michael S; Abbate, Isabella; Aerssens, Jeroen; Bidet, Yannick; Bouchez, Olivier; Gabriel, Christian; Izopet, Jacques; Kessler, Harald H; Stelzl, Evelyn; Di Giallonardo, Francesca; Schlapbach, Ralph; Radonic, Aleksander; Paredes, Roger; Recordon-Pinson, Patricia; Sakwa, James; St John, Elizabeth P; Schmitz-Agheguian, Gudrun G; Metzner, Karin J; Däumer, Martin P (2014). An international multicenter study on HIV-1 drug resistance testing by 454 ultra-deep pyrosequencing. Journal of Virological Methods, 204:31-37.

Ponroy, Nicolas. Anti-Cytomegalovirus Activity of Statins: Cellular and Molecular Mechanism. 2014, University of Zurich, Faculty of Science.

Speck, Roberto F (2014). Anti-retroviral Treatment Testing in HIV-infected Humanized Mice. In: Poluektova, Larisa; Garcia-Martinez, Victor; Koyanagi, Yoshio; Manz, Markus G; Tager, Andrew. Humanized Mice for HIV Research. s.n.: Springer, n/a.

Hässig, Annina Maria; Roos, Malgorzata; Etter, Anne; Bossart, Walter; Müller, Nicolas; Schiesser, Marc; Wüthrich, Rudolf P; Fehr, Thomas (2014). Association of BK viremia with human leukocyte antigen mismatches and acute rejection, but not with type of calcineurin inhibitor. Transplant Infectious Disease, 16(1):44-54.

Conen, Anna; Wang, Qing; Fehr, Jan (2014). Authors reply to the letter to the editor by Carrieri et al. HIV and alcohol - the ongoing debate. Journal of Acquired Immune Deficiency Syndromes, 65(4):e157-8.

Hasse, Barbara; Huttner, Angela; Huttner, Benedikt; Egger, Martin; Zanetti, Giorgio; Marschall, Jonas; Mühlemann, Katrin; Harbarth, Stephan (2014). Behandlung von unkomplizierten Harnwegsinfektionen. Guidelines, Schweizerische Gesellschaft für Infektiologie.

Pfisterer, David; Georgi, Anna; Günthard, Huldrych (2014). CME. Akute HIV-Infektion. Praxis, 103(5):247-253.

Landolt, Lea; Kovari, Helen (2014). CME. Erythema migrans. Praxis, 103(25):1491-1498.

Huser, Mélanie C; Meindl-Fridez, Claudine; Zinkernagel, Annelies S (2014). CME. Grampositives toxisches Schocksyndrom. Praxis, 103(22):1293-1301.

Orasch, Christina; Marchetti, Oscar; Garbino, Jorge; Schrenzel, Jacques; Zimmerli, Stefan; Mühlethaler, Konrad; Rossi, Marco; Pfyffer, Gaby; Ruef, Christian; Fehr, Jan; Zbinden, Reinhard; Calandra, Thierry; Bille, Jacques (2014). Candida species distribution and antifungal susceptibility testing according to European Committee on Antimicrobial Susceptibility Testing and new vs. old Clinical and Laboratory Standards Institute clinical breakpoints: a 6-year prospective candidaemia survey from the fungal infection network of Switzerland. Clinical Microbiology and Infection, 20(7):698-705.

Hasse, Barbara; Walker, A Sarah; Fehr, Jan; Furrer, Hansjakob; Hoffmann, Matthias; Battegay, Manuel; Calmy, Alexandra; Fellay, Jacques; Di Benedetto, Caroline; Weber, Rainer; Ledergerber, Bruno (2014). Co-trimoxazole prophylaxis is associated with reduced risk of incident tuberculosis in participants in the Swiss HIV Cohort Study. Antimicrobial Agents and Chemotherapy, 58(4):2363-2368.

Taveira, Aline. Comparison of human cytomegalovirus entry mechanisms into porcine and human endothelial cells. 2014, University of Zurich, Faculty of Science.

Glatz, Martin; Müllegger, Robert R; Maurer, Florian; Fingerle, Volker; Achermann, Yvonne; Wilske, Bettina; Bloemberg, Guido V (2014). Detection of Candidatus Neoehrlichia mikurensis, Borrelia burgdorferi sensu lato genospecies and Anaplasma phagocytophilum in a tick population from Austria. Ticks and Tick-borne Diseases, 5(2):139-144.

Nadal, David; Arlettaz, Romaine; Berger, Christoph (2014). Die vertikale HIV-Infektion kann heute erfolgreich verhütet werden, bleibt aber eine Herausforderung. Therapeutische Umschau. Revue thérapeutique, 71(8):503-508.

Regoes, Roland R; McLaren, Paul J; Battegay, Manuel; Bernasconi, Enos; Calmy, Alexandra; Günthard, Huldrych F; Hoffmann, Matthias; Rauch, Andri; Telenti, Amalio; Fellay, Jacques (2014). Disentangling human tolerance and resistance against HIV. PLoS Biology, 12(9):e1001951.

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Mohammadi, Pejman; Desfarges, Sébastien; Bartha, István; Joos, Beda; Zangger, Nadine; Muñoz, Miguel; Günthard, Huldrych F; Beerenwinkel, Niko; Telenti, Amalio; Ciuffi, Angela (2013). 24 hours in the life of HIV-1 in a T cell line. PLoS Pathogens, 9(1):e1003161.

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Conen, Anna; Wang, Qing; Glass, Tracy R; Fux, Christoph A; Thurnheer, Maria Christine; Orasch, Christina; Calmy, Alexandra; Bernasconi, Enos; Vernazza, Pietro; Weber, Rainer; Bucher, Heiner C; Battegay, Manuel; Fehr, Jan (2013). Association of alcohol consumption and HIV surrogate markers in participants of the Swiss HIV Cohort Study. Journal of Acquired Immune Deficiency Syndromes, 64(5):472-478.

Sabin, Caroline A; Ryom, Lene; De Wit, Stephane; Mocroft, Amanda; Phillips, Andrew N; Worm, Signe W; Weber, Rainer; D'Arminio Monforte, Antonella; Reiss, Peter; Kamara, David; El-Sadr, Wafaa; Pradier, Christian; Dabis, Francois; Law, Matthew; Lundgren, Jens (2013). Associations between immune depression and cardiovascular events in HIV infection. AIDS, 27(17):2735-2748.

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González, Raquel; Maldonado, Antonio; Martín, Virginia; Mandomando, Inácio; Fumadó, Victoria; Metzner, Karin J; Sacoor, Charfudin; Fernández, Leónides; Macete, Eusébio; Alonso, Pedro L; Rodríguez, Juan M; Menendez, Clara (2013). Breast milk and gut microbiota in African mothers and infants from an area of high HIV prevalence. PLoS ONE, 8(11):e80299.

Millard, Anne-Laure; Valli, Piero V; Stussi, Georg; Mueller, Nicolas J; Yung, Gisella Puga; Seebach, Jörg D (2013). Brief exercise increases peripheral blood NK cell counts without immediate functional changes, but impairs their responses to ex vivo stimulation. Frontiers in Immunology:4:125.

Mocroft, Amanda; Phillips, Andrew N; Gatell, Jose; Horban, Andrej; Ledergerber, Bruno; Zilmer, Kai; Jevtovic, Djordje; Maltez, Fernando; Podlekareva, Daria; Lundgren, Jens D (2013). CD4 cell count and viral load-specific rates of AIDS, non-AIDS and deaths according to current antiretroviral use. AIDS, 27(6):907-918.

Wolfensberger, Aline; Sax, Hugo; Weber, Rainer; Zbinden, Reinhard; Kuster, Stefan P; Hombach, Michael (2013). Change of antibiotic susceptibility testing guidelines from CLSI to EUCAST: Influence on cumulative hospital antibiograms. PLoS ONE, 8(11):e79130.

Rohrbach, Janine; Stickel, Felix; Schmid, Patrick; Thormann, Wolfgang; Kovari, Helen; Scherrer, Alexandra; Günthard, Huldrych F; Vuichard, Danielle; Cavassini, Matthias; Ambrosioni, Juan; Bernasconi, Enos; Furrer, Hansjakob; Rauch, Andri (2013). Changes in biomarkers of liver disease during successful combination antiretroviral therapy in HIV/HCV-coinfected individuals. Antiviral Therapy, 19(2):149-159.

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Maurer, Florian P; Keller, Peter M; Beuret, Christian; Joha, Cornelia; Achermann, Yvonne; Gubler, Jaques; Bircher, Daniela; Karrer, Urs; Fehr, Jan; Zimmerli, Lukas; Bloemberg, Guido V (2013). Close geographic association of human neoehrlichiosis and tick populations carrying Candidatus Neoehrlichia mikurensis in Eastern Switzerland. Journal of clinical microbiology, 51(1):169-176.

Taylor, Ninon; Grabmeier-Pfistershammer, Katharina; Egle, Alexander; Greil, Richard; Rieger, Armin; Ledergerber, Bruno; Oberkofler, Hannes (2013). Cobas Ampliprep/Cobas TaqMan HIV-1 v2.0 Assay: Consequences at the Cohort Level. PLoS ONE, 8(8):e74024.

Gallant, Joel E; Koenig, Ellen; Andrade-Villanueva, Jaime; Chetchotisakd, Ploenchan; DeJesus, Edwin; Antunes, Francisco; Arastéh, Keikawus; Moyle, Graeme; Rizzardini, Giuliano; Fehr, Jan; Liu, Yapei; Zhong, Lijie; Callebaut, Christian; Szwarcberg, Javier; Rhee, Martin S; Cheng, Andrew K (2013). Cobicistat versus ritonavir as a pharmacoenhancer of atazanavir plus emtricitabine/tenofovir disoproxil fumarate in treatment-naive HIV type 1-infected patients: week 48 results. Journal of Infectious Diseases, 208(1):32-39.

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Rotger, Margalida; Glass, Tracy R; Junier, Thomas; Lundgren, Jens; Neaton, James D; Poloni, Estella S; van 't Wout, Angélique B; Lubomirov, Rubin; Colombo, Sara; Martinez, Raquel; Rauch, Andri; Günthard, Huldrych F; Neuhaus, Jacqueline; Wentworth, Deborah; van Manen, Danielle; Gras, Luuk A; Schuitemaker, Hanneke; Albini, Laura; Torti, Carlo; Jacobson, Lisa P; Li, Xiuhong; Kingsley, Lawrence A; Carli, Federica; Guaraldi, Giovanni; Ford, Emily S; Sereti, Irini; Hadigan, Colleen; Martinez, Esteban; Arnedo, Mireia; Egaña-Gorroño, Lander; Gatell, Jose M; Law, Matthew; Bendall, Courtney; Petoumenos, Kathy; Rockstroh, Jürgen; Wasmuth, Jan-Christian; Kabamba, Kabeya; Delforge, Marc; De Wit, Stephane; Berger, Florian; Mauss, Stefan; de Paz Sierra, Mariana; Losso, Marcelo; Belloso, Waldo H; Leyes, Maria; Campins, Antoni; Mondi, Annalisa; De Luca, Andrea; Bernardino, Ignacio; Barriuso-Iglesias, Mónica; Torrecilla-Rodriguez, Ana; Gonzalez-Garcia, Juan; Arribas, José R; Fanti, Iuri; Gel, Silvia; Puig, Jordi; Negredo, Eugenia; Gutierrez, Mar; Domingo, Pere; Fischer, Julia; Fätkenheuer, Gerd; Alonso-Villaverde, Carlos; Macken, Alan; Woo, James; McGinty, Tara; Mallon, Patrick; Mangili, Alexandra; Skinner, Sally; Wanke, Christine A; Reiss, Peter; Weber, Rainer; Bucher, Heiner C; Fellay, Jacques; Telenti, Amalio; Tarr, Philip E (2013). Contribution of genetic background, traditional risk factors, and HIV-related factors to coronary artery disease events in HIV-positive persons. Clinical Infectious Diseases, 57(1):112-121.

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Weber, R; Ruppik, M; Rickenbach, M; Spoerri, A; Furrer, H; Battegay, M; Cavassini, M; Calmy, A; Bernasconi, E; Schmid, P; Flepp, M; Kowalska, J; Ledergerber, B; Schmid, P; Schultze, D; Schöni-Affolter, F; Schüpbach, J; Speck, R; Taffé, P; Tarr, P; Telenti, A; Trkola, A; Vernazza, P; Weber, R; Yerly, S (2013). Decreasing mortality and changing patterns of causes of death in the Swiss HIV Cohort Study. HIV Medicine, 14(4):195-207.

Koller, Michael T; van Delden, Christian; Müller, Nicolas J; Baumann, Philippe; Lovis, Christian; Marti, Hans-Peter; Fehr, Thomas; Binet, Isabelle; De Geest, Sabina; Bucher, Heiner C; Meylan, Pascal; Pascual, Manuel; Steiger, Jürg (2013). Design and methodology of the Swiss Transplant Cohort Study (STCS): a comprehensive prospective nationwide long-term follow-up cohort. European Journal of Epidemiology, 28(4):347-355.

Vratskikh, Oksana; Stiasny, Karin; Zlatkovic, Jürgen; Tsouchnikas, Georgios; Jarmer, Johanna; Karrer, Urs; Roggendorf, Michael; Roggendorf, Hedwig; Allwinn, Regina; Heinz, Franz X (2013). Dissection of antibody specificities induced by yellow fever vaccination. PLoS Pathogens, 9(6):e1003458.

Tchang, Vincent Sam Yong; Mekker, Andrea; Siegmund, Kerstin; Karrer, Urs; Pieters, Jean (2013). Diverging role for coronin 1 in antiviral CD4(+) and CD8(+) T cell responses. Molecular Immunology, 56(4):683-692.

Cosgrove, Cormac; Ussher, James E; Rauch, Andri; Gärtner, Kathleen; Kurioka, Ayako; Hühn, Michael H; Adelmann, Krista; Kang, Yu-Hoi; Fergusson, Joannah R; Simmonds, Peter; Goulder, Philip; Hansen, Ted H; Fox, Julie; Günthard, Huldrych F; Khanna, Nina; Powrie, Fiona; Steel, Alan; Gazzard, Brian; Phillips, Rodney E; Frater, John; Uhlig, Holm; Klenerman, Paul (2013). Early and nonreversible decrease of CD161++ /MAIT cells in HIV infection. Blood, 121(6):951-961.

Bernasconi, Michele; Ueda, Seigo; Krukowski, Patricia; Bornhauser, Beat C; Ladell, Kristin; Dorner, Marcus; Sigrist, Juerg A; Campidelli, Cristina; Aslandogmus, Roberta; Alessi, Davide; Berger, Christoph; Pileri, Stefano A; Speck, Roberto F; Nadal, David (2013). Early gene expression changes by Epstein-Barr virus infection of B-cells indicate CDKs and survivin as therapeutic targets for post-transplant lymphoproliferative diseases. International Journal of Cancer, 133(10):2341-2350.

Anagnostopoulos, Alexia; Rotger, Margalida; Aouri, Manel; Kuster, Stefan P; Telenti, Amalio; Décosterd, Laurent A; Günthard, Huldrych F (2013). Efavirenz intoxication due to a new CYP2B6 constellation. Antiviral Therapy, 18(5):735-738.

Brennan, Daniel C; Aguado, José M; Potena, Luciano; Jardine, Alan G; Legendre, Christophe; Säemann, Marcus D; Mueller, Nicolas J; Merville, Pierre; Emery, Vincent; Nashan, Björn (2013). Effect of maintenance immunosuppressive drugs on virus pathobiology: evidence and potential mechanisms. Reviews in Medical Virology, 23(2):97-125.

Kuster, S P. Epidemiology of Influenza and Influenza-related Infections in the community and the Healthcare Setting. 2013, University of Zurich, Faculty of Medicine.

Gasser, O; Brander, C; Wolbers, M; Brown, N; Rauch, A; Günthard, H; Battegay, M; Hess, C (2013). Expansion of interferon-γ-secreting HIV-specific T cells during successful antiretroviral therapy. HIV Medicine, 14(4):241-246.

Preiswerk, B; Rudiger, A; Fehr, J; Corti, N (2013). Experience with daptomycin daily dosing in ICU patients undergoing continuous renal replacement therapy. Infection, 41(2):553-557.

Achermann, Y; Eigenmann, K; Ledergerber, B; Derksen, L; Rafeiner, P; Clauss, M; Nüesch, R; Zellweger, C; Vogt, M; Zimmerli, W (2013). Factors associated with rifampin resistance in staphylococcal periprosthetic joint infections (PJI): a matched case–control study. Infection, 41(2):431-437.

Sommerstein, R; Ramsay, D; Dubuis, O; Waser, S; Aebersold, F; Vogt, M (2013). Fatal Neisseria sicca endocarditis. Infection, 41(3):747-749.

Fayet-Mello, Aurélie; Buclin, Thierry; Guignard, Nicole; Cruchon, Sandra; Cavassini, Matthias; Grawe, Claudia; Gremlich, Erika; Popp, Karoline Aebi; Schmid, Flavia; Eap, Chin B; Telenti, Amalio; Biollaz, Jérôme; Decosterd, Laurent A; Martinez de Tejada, Begoña (2013). Free and total plasma levels of lopinavir during pregnancy, at delivery and postpartum: implications for dosage adjustments in pregnant women. Antiviral Therapy, 18(2):171-182.

Fenner, Lukas; Egger, Matthias; Bodmer, Thomas; Furrer, Hansjakob; Ballif, Marie; Battegay, Manuel; Helbling, Peter; Fehr, Jan; Gsponer, Thomas; Rieder, Hans L; Zwahlen, Marcel; Hoffmann, Matthias; Bernasconi, Enos; Cavassini, Matthias; Calmy, Alexandra; Dolina, Marisa; Frei, Reno; Janssens, Jean-Paul; Borrell, Sonia; Stucki, David; Schrenzel, Jacques; Böttger, Erik C; Gagneux, Sebastien (2013). HIV infection disrupts the sympatric host-pathogen relationship in human tuberculosis. PLoS Genetics, 9(3):e1003318.

von Braun, Amrei; Günthard, Huldrych (2013). HIV-Infektion und antiretrovirale Therapie: Grundsätze der Behandlung und Einflüsse auf andere Therapien. Praxis, 102(1):5-13; quiz 14.

Allegranzi, B; Sax, H; Pittet, D (2013). Hand hygiene and healthcare system change within multi-modal promotion: a narrative review. Journal of Hospital Infection, 83(S1):S3-S10.

Wandeler, Gilles; Gsponer, Thomas; Bihl, Florian; Bernasconi, Enos; Cavassini, Matthias; Kovari, Helen; Schmid, Patrick; Battegay, Manuel; Calmy, Alexandra; Egger, Matthias; Furrer, Hansjakob; Rauch, Andri (2013). Hepatitis B virus infection is associated with impaired immunological recovery during antiretroviral therapy in the Swiss HIV Cohort Study. Journal of Infectious Diseases, 208(9):1454-1458.

Uçkay, Ilker; Sax, Hugo; Gayet-Ageron, Angèle; Ruef, Christian; Mühlemann, Kathrin; Troillet, Nicolas; Petignat, Christiane; Bernasconi, Enos; Balmelli, Carlo; Widmer, Andreas; Boubaker, Karim; Pittet, Didier (2013). High proportion of healthcare-associated urinary tract infection in the absence of prior exposure to urinary catheter: a cross-sectional study. Antimicrobial Resistance and Infection Control, 2:5.

Cusini, A; Vernazza, P L; Yerly, S; Decosterd, L A; Ledergerber, B; Fux, C A; Rohrbach, J; Widmer, N; Hirschel, B; Gaudenz, R; Cavassini, M; Klimkait, Th; Zenger, F; Gutmann, C; Opravil, M; Günthard, H F (2013). Higher CNS Penetration-Effectiveness of long-term combination antiretroviral therapy is associated with better HIV-1 viral suppression in cerebrospinal fluid. Journal of Acquired Immune Deficiency Syndromes, 62(1):28-35.

Kouyos, Roger; Klein, Eili; Grenfell, Bryan (2013). Hospital-community interactions foster coexistence between methicillin-resistant strains of Staphylococcus aureus. PLoS Pathogens, 9(2):e1003134.

Shirreff, George; Alizon, Samuel; Cori, Anne; Gunthard, Huldrych F; Laeyendecker, Oliver; van Sighem, Ard; Bezemer, Daniela; Fraser, Christophe (2013). How effectively can HIV phylogenies be used to measure heritability? Evolution, Medicine, and Public Health, 2013(1):209-224.

Wolfensberger, A; Benz, R; Russi, E W; Tinguely, M; Keller, C; Gerber, B (2013). Husten, Atemnot und B-Symptome bei einer 40-jährigen Frau. Der Internist, 54(8):1011-1015.

Smith, Miranda Z; Bastidas, Sonia; Karrer, Urs; Oxenius, Annette (2013). Impact of antigen specificity on CD4+ T cell activation in chronic HIV-1 infection. BMC Infectious Diseases, 13:100.

Manuel, O; Kralidis, G; Mueller, N J; Hirsch, H H; Garzoni, C; van Delden, C; Berger, C; Boggian, K; Cusini, A; Koller, M T; Weisser, M; Pascual, M; Meylan, P R (2013). Impact of antiviral preventive strategies on the incidence and outcomes of cytomegalovirus disease in solid organ transplant recipients. American Journal of Transplantation, 13(9):2402-2410.

Li, Jonathan Z; Paredes, Roger; Ribaudo, Heather J; Kozal, Michael J; Svarovskaia, Evguenia S; Johnson, Jeffrey A; Geretti, Anna Maria; Metzner, Karin J; Jakobsen, Martin R; Hullsiek, Katherine Huppler; Ostergaard, Lars; Miller, Michael D; Kuritzkes, Daniel R (2013). Impact of minority nonnucleoside reverse transcriptase inhibitor resistance mutations on resistance genotype after virologic failure. Journal of Infectious Diseases, 207(6):893-897.

Boillat-Blanco, Noémie; Darling, Katharine E A; Taffe, Patrick; Osih, Regina; Strahm, Carol; Adami, Maddalena; Elzi, Luigia; Daou, Samira; Fehr, Jan; Wandeler, Gilles; Cavassini, Matthias (2013). Impact of recommendation updates in well-controlled patients on non-recommended antiretroviral therapies: the Swiss HIV Cohort Study. Journal of Acquired Immune Deficiency Syndromes, 62(2):180-189.

Sax, Hugo; Clack, Lauren; Touveneau, Sylvie; Jantarada, Fabricio da Liberdade; Pittet, Didier; Zingg, Walter (2013). Implementation of infection control best practice in intensive care units throughout Europe: a mixed-method evaluation study. Implementation Science, 8:24.

Hombach, Michael; Wolfensberger, Aline; Kuster, Stefan P; Böttger, Erik C (2013). Influence of clinical breakpoint changes from CLSI 2009 to EUCAST 2011 antimicrobial susceptibility testing guidelines on multidrug resistance rates of Gram-negative rods. Journal of Clinical Microbiology, 51(7):2385-2587.

Du Pasquier, Renaud A; Jilek, Samantha; Kalubi, Malela; Yerly, Sabine; Fux, Christoph A; Gutmann, Christine; Cusini, Alexia; Günthard, Huldrych F; Cavassini, Matthias; Vernazza, Pietro L (2013). Marked Increase of the Astrocytic Marker S100B in the Cerebrospinal Fluid of HIV-infected Patients on LPV/r-Monotherapy. AIDS (London, England), 27(2):203-210.

Aebi-Popp, Karoline; Mulcahy, Fiona; Glass, Tracy R; Rudin, Christoph; Martinez de Tejada, Begona; Bertisch, Barbara; Fehr, Jan; Grawe, Claudia; Scheibner, Kathrin; Rickenbach, Martin; Hoesli, Irene; Thorne, Claire (2013). Missed opportunities among HIV-positive women to control viral replication during pregnancy and to have a vaginal delivery. Journal of Acquired Immune Deficiency Syndromes, 64(1):58-65.

Di Giallonardo, Francesca; Zagordi, Osvaldo; Duport, Yannick; Leemann, Christine; Joos, Beda; Künzli-Gontarczyk, Marzanna; Bruggmann, Rémy; Beerenwinkel, Niko; Günthard, Huldrych F; Metzner, Karin J (2013). Next-Generation Sequencing of HIV-1 RNA Genomes: Determination of Error Rates and Minimizing Artificial Recombination. PLoS ONE, 8(9):e74249.

Metzner, Karin J; Scherrer, Alexandra U; Preiswerk, Benjamin; Joos, Beda; von Wyl, Viktor; Leemann, Christine; Rieder, Philip; Braun, Dominique; Grube, Christina; Kuster, Herbert; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Furrer, Hansjakob; Battegay, Manuel; Vernazza, Pietro L; Cavassini, Matthias; Calmy, Alexandra; Bernasconi, Enos; Weber, Rainer; Günthard, Huldrych F (2013). Origin of minority drug-resistant HIV-1 variants in primary HIV-1 infection. Journal of Infectious Diseases, 208(7):1102-1112.

Lubomirov, Rubin; Arab-Alameddine, Mona; Rotger, Margalida; Fayet-Mello, Aurélie; Martinez, Raquel; Guidi, Monia; di Iulio, Julia; Cavassini, Matthias; Günthard, Huldrych F; Furrer, Hansjakob; Marzolini, Catia; Bernasconi, Enos; Calmy, Alexandra; Buclin, Thierry; Decosterd, Laurent A; Csajka, Chantal; Telenti, Amalio (2013). Pharmacogenetics-based population pharmacokinetic analysis of etravirine in HIV-1 infected individuals. Pharmacogenetics and Genomics, 23(1):9-18.

Mertz, Dominik; Kim, Tae Hyong; Johnstone, Jennie; Lam, Po-Po; Science, Michelle; Kuster, Stefan P; Fadel, Shaza A; Tran, Dat; Fernandez, Eduardo; Bhatnagar, Neera; Loeb, Mark (2013). Populations at risk for severe or complicated influenza illness: systematic review and meta-analysis. BMJ : British medical journal, 347:f5061.

Bostanci, Nagihan; Thurnheer, Thomas; Aduse-Opoku, Joseph; Curtis, Michael A; Zinkernagel, Annelies S; Belibasakis, Georgios N (2013). Porphyromonas gingivalis regulates TREM-1 in human polymorphonuclear neutrophils via its gingipains. PLoS ONE, 8(10):e75784.

Ledergerber, B; Costagliola, D; Lodwick, R; Torti, C; van Sighem, A; Podzamczer, D; Mocroft, A; Dorrucci, M; Masquelier, B; Günthard, H F; de Luca, A; Michalik, C (2013). Predictors of CD4+ T-Cell Counts of HIV Type 1-Infected Persons After Virologic Failure of All 3 Original Antiretroviral Drug Classes. Journal of Infectious Diseases, 207(5):759-767.

Achermann, Yvonne; Rössle, Matthias; Hoffmann, Matthias; Deggim, Vanessa; Kuster, Stefan; Zimmermann, Dieter R; Bloemberg, Guido; Hombach, Michael; Hasse, Barbara (2013). Prosthetic valve endocarditis and bloodstream infection due to Mycobacterium chimaera. Journal of Clinical Microbiology, 51(6):1769-1773.

Braun, Dominique Laurent; Hasse, Barbara Katharina; Stricker, Julia; Fehr, Jan Sven (2013). Prosthetic valve endocarditis caused by Propionibacterium species successfully treated with coadministered rifampin: report of two cases. BMJ Case Reports, 2013:pii: bcr2012007204.

Abdelhady, Wessam; Bayer, Arnold S; Seidl, Kati; Nast, Cynthia C; Kiedrowski, Megan R; Horswill, Alexander R; Yeaman, Michael R; Xiong, Yan Q (2013). Reduced vancomycin susceptibility in an in vitro catheter-related biofilm model correlates with poor therapeutic outcomes in experimental endocarditis due to methicillin-resistant Staphylococcus aureus. Antimicrobial Agents and Chemotherapy, 57(3):1447-1454.

Sassi, Monica; Mueller, Nicolas J; Yazaki, Hirohisa; Oka, Shinichi; Gianella, Sara; Kovacs, Joseph A (2013). Reply to Hauser et al. Clinical Infectious Diseases, 56(1):166-167.

Bosshard, Philipp P; Graf, Nicole; Knaute, Damaris Fröhlich; Kündig, Thomas; Lautenschlager, Stephan; Weber, Rainer (2013). Response of treponema pallidum particle agglutination test titers to treatment of syphilis. Clinical Infectious Diseases, 56(3):463-464.

Cusini, Alexia; Ledergerber, Bruno; Widmer, Nicolas; Günthard, Huldrych F (2013). Response to Calcagno comment on "Higher CNS penetration-effectiveness of long-term combination antiretroviral therapy is associated with better HIV-1 viral suppression in cerebrospinal fluid". Journal of Acquired Immune Deficiency Syndromes, 64(2):e14-e15.

Bertisch, Barbara; Franceschi, Silvia; Lise, Mauro; Vernazza, Pietro; Keiser, Olivia; Schöni-Affolter, Franziska; Bouchardy, Christine; Dehler, Silvia; Levi, Fabio; Jundt, Gernot; Ess, Silvia; Pawlita, Michael; Kovari, Helen; Wandeler, Gilles; Calmy, Alexandra; Cavassini, Matthias; Stöckle, Marcel; Clifford, Gary (2013). Risk factors for anal cancer in persons infected With HIV: A nested case-control study in the Swiss HIV Cohort Study. American Journal of Epidemiology, 178(6):877-884.

Kuster, Stefan P; Coleman, Brenda L; Raboud, Janet; McNeil, Shelly; De Serres, Gaston; Gubbay, Jonathan; Hatchette, Todd; Katz, Kevin C; Loeb, Mark; Low, Donald; Mazzulli, Tony; Simor, Andrew; McGeer, Allison J (2013). Risk factors for influenza among health care workers during 2009 pandemic, Toronto, Ontario, Canada. Emerging Infectious Diseases, 19(4):606-615.

Quiblier, Chantal; Seidl, Kati; Roschitzki, Bernd; Zinkernagel, Annelies S; Berger-Bächi, Brigitte; Senn, Maria M (2013). Secretome analysis defines the major role of SecDF in Staphylococcus aureus virulence. PLoS ONE, 8(5):e63513.

Weibel, Pascal; Ender, Miriam; Madon, Jerzy; Zinkernagel, Annelies; Schuepbach, Reto (2013). Selection vector for direct cloning of proof reading polymerase chain reaction products based on the lethal ccdB gene in Escherichia Coli. Advances in Microbiology, 3(1):14-20.

Grint, D; Peters, L; Reekie, J; Soriano, V; Kirk, O; Knysz, B; Suetnov, O; Lazzarin, A; Ledergerber, B; Rockstroh, J K; Mocroft, A (2013). Stability of hepatitis C virus (HCV) RNA levels among interferon-naïve HIV/HCV-coinfected individuals treated with combination antiretroviral therapy. HIV Medicine, 14(6):370-378.

Weber, R; Fontana, A (2013). Status febrilis. In: Battegay, E. Siegenthalers Differenzialdiagnose: innere Krankheiten - vom Symptom zur Diagnose. Stuttgart: Georg Thieme Verlag, 111-216.

Veloso, Tiago Rafael; Zbinden, Andrea; Andreoni, Federica; Giddey, Marlyse; Vouillamoz, Jacques; Moreillon, Philippe; Zinkernagel, Annelies Sophie; Entenza, José Manuel (2013). Streptococcus tigurinus is highly virulent in a rat model of experimental endocarditis. International Journal of Medical Microbiology : IJMM, 303(8):498-504.

Seidl, Kati; Zinkernagel, Annelies S (2013). The MTT assay is a rapid and reliable quantitative method to assess Staphylococcus aureus induced endothelial cell damage. Journal of Microbiological Methods, 92(3):307-309.

Mocroft, A; Furrer, H J; Miro, J M; Reiss, P; Mussini, C; Kirk, O; Abgrall, S; Ayayi, S; Bartmeyer, B; Braun, D; Castagna, A; d'Arminio Monforte, A; Gazzard, B; Gutierrez, F; Hurtado, I; Jansen, K; Meyer, L; Muñoz, P; Obel, N; Soler-Palacin, P; Papadopoulos, A; Raffi, F; Ramos, J T; Rockstroh, J K; Salmon, D; Torti, C; Warszawski, J; de Wit, S; Zangerle, R; Fabre-Colin, C; Kjaer, J; Chene, G; Grarup, J; Lundgren, J D (2013). The incidence of AIDS-defining illnesses at a current CD4 count ≥ 200 cells/μL in the post-combination antiretroviral therapy era. Clinical Infectious Diseases, 57(7):1038-1047.

Beerenwinkel, Niko; Montazeri, Hesam; Schuhmacher, Heike; Knupfer, Patrick; von Wyl, Viktor; Furrer, Hansjakob; Battegay, Manuel; Hirschel, Bernard; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Yerly, Sabine; Böni, Jürg; Klimkait, Thomas; Cellerai, Cristina; Günthard, Huldrych F (2013). The individualized genetic barrier predicts treatment response in a large cohort of HIV-1 infected patients. PLoS Computational Biology, 9(8):e1003203.

Wang, Qing; Young, Jim; Bernasconi, Enos; Cavassini, Matthias; Vernazza, Pietro; Hirschel, Bernard; Weber, Rainer; Furrer, Hansjakob; Stoeckle, Marcel; Bucher, Heiner C; Fux, Christoph (2013). The prevalence of erectile dysfunction and its association with antiretroviral therapy in HIV-infected men: the Swiss HIV Cohort Study. Antiviral Therapy, 18(3):337-344.

Tchang, Vincent Sam Yong. The role of coronin 1 during cell mediated immune responses. 2013, University of Zurich, Faculty of Science.

Johnson, Victoria A; Calvez, Vincent; Gunthard, Huldrych F; Paredes, Roger; Pillay, Deenan; Shafer, Robert W; Wensing, Annemarie M; Richman, Douglas D (2013). Update of the drug resistance mutations in HIV-1: March 2013. Topics in Antiviral Medicine, 21(1):6-14.

Hasse, Barbara; Husmann, Lars; Zinkernagel, Annelies; Weber, Rainer; Lachat, Mario L; Mayer, Dieter (2013). Vascular graft infections. Swiss Medical Weekly, 143:w13754.

Schüpbach, J; Bisset, L R; Gebhardt, M D; Regenass, S; Bürgisser, P; Gorgievski, M; Klimkait, T; Andreutti, C; Martinetti, G; Niederhauser, C; Yerly, S; Pfister, S; Schultze, D; Brandenberger, M; Schöni-Affolter, F; Scherrer, A U; Gunthard, H F (2012). Diagnostic performance of line-immunoassay based algorithms for incident HIV-1 infection. BMC Infectious Diseases, 12(88):1471-2334.

Glutz von Blotzheim, L; Müller, N J; Huber, L C; Degen, T (2012). 76-jährige Patientin mit tiefer Beinvenenthrombose und zervikaler Lymphadenopathie. Der Internist, 53(6):756-759.

Achermann, Y; Frauenfelder, T; Obrist, S; Zaugg, K; Corti, N; Günthard, H F (2012). A rare but severe pulmonary side effect of cetuximab in two patients. BMJ Case Reports:5 pages.

Greiner, M; Cusini, A; Ruesch, M; Schiesser, M; Ledergerber, B; Fehr, T; Mueller, N J (2012). A stringent preemptive protocol reduces cytomegalovirus disease in the first 6 months after kidney transplantation. Infection, 40(6):669-675.

Nemeth, Johannes; Rumetshofer, Rudolf; Winkler, Heide-Maria; Burghuber, Otto C; Müller, Catharina; Winkler, Stefan (2012). Active tuberculosis is characterized by an antigen specific and strictly localized expansion of effector T cells at the site of infection. European Journal of Immunology, 42(11):2844-2850.

Savaria, F. Antibiotikaresistenzen von E. coli in Urinproben: Prävalenzdaten dreier Laboratorien im Raum Zürich von 1985 bis 2010. 2012, University of Zurich, Faculty of Medicine.

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Thompson, Melanie A; Aberg, Judith A; Hoy, Jennifer F; Telenti, Amalio; Benson, Constance; Cahn, Pedro; Eron, Joseph J; Günthard, Huldrych F; Hammer, Scott M; Reiss, Peter; Richman, Douglas D; Rizzardini, Giuliano; Thomas, David L; Jacobsen, Donna M; Volberding, Paul A (2012). Antiretroviral treatment of adult HIV infection: 2012 recommendations of the International Antiviral Society-USA panel. JAMA : the Journal of the American Medical Association, 308(4):387-402.

Sax, H; Stewardson, A; Allegranzi, B; Boyce, J M; Clack, L; Larson, E L; Pittet, D (2012). Beyond reasonable doubt: evidence for "My 5 moments for hand hygiene". London: British Editorial Society of Bone and Joint Surgery.

Mocroft, A; Phillips, A; Gatell, J; Horban, A; Ledergerber, B; Zilmer, K; Jevtovic, D; Maltez, F; Kirk, O; Lundgren, J (2012). CD4 count and viral load specific rates of AIDS, non-AIDS and deaths according to current antiretroviral use. Journal of the International Aids Society, 15(6):18191.

Nakagawa, Fumiyo; Lodwick, Rebecca; Costagliola, Dominique; van Sighem, Ard; Torti, Carlo; Podzamczer, Daniel; Mocroft, Amanda; Ledergerber, Bruno; Dorrucci, Maria; Cozzi-Lepri, Alessandra; Jansen, Klaus; Masquelier, Bernard; García, Federico; De Wit, Stephane; Stephan, Christoph; Obel, Niels; Fätkenhaeuer, Gerd; Castagna, Antonella; Sambatakou, Helen; Mussini, Cristina; Ghosn, Jade; Zangerle, Robert; Duval, Xavier; Meyer, Laurence; Perez-Hoyos, Santiago; Fabre-Colin, Céline; Kjaer, Jesper; Chene, Genevieve; Grarup, Jesper; Phillips, Andrew (2012). Calendar time trends in the incidence and prevalence of triple-class virologic failure in antiretroviral drug-experienced people with HIV in Europe. Journal of Acquired Immune Deficiency Syndromes, 59(3):294-299.

Longtin, Yves; Farquet, Natacha; Gayet-Ageron, Angèle; Sax, Hugo; Pittet, Didier (2012). Caregivers' Perceptions of Patients as Reminders to Improve Hand Hygiene. Archives of Internal Medicine, 172(19):1516-1517.

Aalen, Odd O; Røysland, Kjetil; Gran, Jon Michael; Ledergerber, Bruno (2012). Causality, mediation and time: a dynamic viewpoint. Journal of the Royal Statistical Society: Series A, 175(4):831-861.

Abela, Irene A; Berlinger, Livia; Schanz, Merle; Reynell, Lucy; Günthard, Huldrych F; Rusert, Peter; Trkola, Alexandra (2012). Cell-cell transmission enables HIV-1 to evade inhibition by potent CD4bs directed antibodies. PLoS Pathogens, 8(4):e1002634.

Beerenwinkel, Niko; Günthard, Huldrych F; Roth, Volker; Metzner, Karin J (2012). Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data. Frontiers in Microbiology, 3:329.

Elzi, Luigia; Erb, Stefan; Furrer, Hansjakob; Ledergerber, Bruno; Cavassini, Matthias; Hirschel, Bernard; Vernazza, Pietro; Bernasconi, Enos; Weber, Rainer; Battegay, Manuel (2012). Choice of initial combination antiretroviral therapy in individuals with hiv infection: determinants and outcomes. Archives of internal medicine, 172(17):1313-1321.

Colombo, Carlo; Senn, Gabriela; Bürgel, Anne; Ruef, Christian (2012). Clearance of an epidemic clone of methicillin-resistant Staphylococcus aureus in a drug-use network: A follow-up study in Switzerland. Scandinavian Journal of Infectious Diseases, 44(9):650-655.

Arenas-Pinto, Alejandro; Weller, Ian; Ekong, Rosemary; Grant, Alison; Karstaedt, Alan; Reiss, Peter; Telisinghe, Lilanganee; Weber, Rainer; Bolhaar, Martine; Bradman, Neil; Ingram, Catherine (2012). Common inherited mitochondrial DNA mutations and nucleoside reverse transcriptase inhibitor-induced severe hyperlactataemia in HIV-infected adults: an exploratory study. Antiviral Therapy, 17(2):275-82.

Uchiyama, Satoshi; Andreoni, Federica; Schuepbach, Reto A; Nizet, Victor; Zinkernagel, Annelies S (2012). DNase Sda1 allows invasive M1T1 Group A Streptococcus to prevent TLR9-dependent recognition. PLoS Pathogens, 8(6):e1002736.

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