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Items where Subject is "04 Faculty of Medicine > University Hospital Zurich > Clinic for Infectious Diseases"

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Wensing, Annemarie M; Calvez, Vincent; Günthard, Huldrych F; Johnson, Victoria A; Paredes, Roger; Pillay, Deenan; Shafer, Robert W; Richman, Douglas D (2017). 2017 Update of the Drug Resistance Mutations in HIV-1. Topics in Antiviral Medicine, 24(4):132-133.

Lodi, Sara; Costagliola, Dominique; Sabin, Caroline A; Del Amo, Julia; Logan, Roger; Abgrall, Sophie; Reiss, Peter; van Sighem, Ard; Jose, Sophie; Bucher, Heiner C; Kovari, Helen; Ambrosioni, Juan; Pantazis, Nikos; Dabis, Francois; Vandenhende, Marie-Anne; Meyer, Laurence; Seng, Rémonie; Gill, M John; Phillips, Andrew N; Porter, Kholoud; Unspecified; Muga, Roberto; Tate, Janet; Justice, Amy; et al (2017). Effect of Immediate Initiation of Antiretroviral Treatment in HIV-Positive Individuals Aged 50 Years or Older. Journal of Acquired Immune Deficiency Syndromes, 76(3):311-318.

Lysenko, Veronika; McHugh, Donal; Behrmann, Lena; Rochat, Mary-Aude; Wilk, Christian M; Kovtonyuk, Larisa V; Bourquin, Jean-Pierre; Münz, Christian; Manz, Markus G; Speck, Roberto F; Theocharides, Alexandre P (2017). Humanised mouse models for haematopoiesis and infectious diseases. Swiss Medical Weekly, 147:w14516.

AIDS-defining Cancer Project Working Group for IeDEA; COHERE (2017). Comparison of Kaposi Sarcoma Risk in Human Immunodeficiency Virus-Positive Adults Across 5 Continents: A Multiregional Multicohort Study. Clinical Infectious Diseases, 65(8):1316-1326.

Cozzi-Lepri, A; Zangerle, R; Machala, L; Zilmer, K; Ristola, M; Pradier, C; Kirk, O; Sambatakou, H; Fätkenheuer, G; Yust, I; Schmid, P; Gottfredsson, M; Khromova, I; Jilich, D; Flisiak, R; Smidt, J; Rozentale, B; Radoi, R; Losso, M H; Lundgren, J D; Mocroft, A; EuroSIDA Study Group (2017). Incidence of cancer and overall risk of mortality in individuals treated with raltegravir-based and non-raltegravir-based combination antiretroviral therapy regimens. HIV Medicine:Epub ahead of print.

Braun, Dominique L; Marzel, Alex; Steffens, Daniela; Schreiber, Peter W; Grube, Christina; Scherrer, Alexandra U; Kouyos, Roger D; Günthard, Huldrych F; Swiss HIV Cohort Study (2017). High rates of subsequent asymptomatic STIs and risky sexual behavior in patients initially presenting with primary HIV-1 infection. Clinical Infectious Diseases:Epub ahead of print.

Caniglia, Ellen C; Phillips, Andrew; Porter, Kholoud; Sabin, Caroline A; Winston, Alan; Logan, Roger; Gill, John; Vandenhende, Marie-Anne; Barger, Diana; Lodi, Sara; Moreno, Santiago; Arribas, José Ramón; Pacheco, Antonio; Cardoso, Sandra W; Chrysos, George; Gogos, Charalabos; Abgrall, Sophie; Costagliola, Dominique; Meyer, Laurence; Seng, Remonie; van Sighem, Ard; Reiss, Peter; Muga, Roberto; Hoyos, Santiago Pérez; Braun, Dominique; Hauser, Christoph; Barrufet, Pilar; Leyes, Maria; Tate, Janet; Justice, Amy; Hernán, Miguel A (2017). Commonly prescribed antiretroviral therapy regimens and incidence of AIDS-defining neurological conditions. Journal of Acquired Immune Deficiency Syndromes:Epub ahead of print.

Bertels, Frederic; Marzel, Alex; Leventhal, Gabriel; Mitov, Venelin; Fellay, Jacques; Günthard, Huldrych F; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Battegay, Manuel; Rauch, Andri; Cavassini, Matthias; Calmy, Alexandra; Bernasconi, Enos; Schmid, Patrick; Scherrer, Alexandra U; Müller, Viktor; Bonhoeffer, Sebastian; Kouyos, Roger; Regoes, Roland R; Swiss HIV Cohort Study (2017). Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T Cell Decline and Per-Parasite Pathogenicity. Molecular Biology and Evolution:Epub ahead of print.

Kuster, Stefan P; Eisenring, Marie-Christine; Sax, Hugo; Troillet, Nicolas; Swissnoso (2017). Structure, Process, and Outcome Quality of Surgical Site Infection Surveillance in Switzerland. Infection Control and Hospital Epidemiology, 38(10):1172-1181.

Swiss HIV Cohort Study; Turk, Teja; Bachmann, Nadine; Kadelka, Claus; Böni, Jürg; Yerly, Sabine; Aubert, Vincent; Klimkait, Thomas; Battegay, Manuel; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Furrer, Hansjakob; Hoffmann, Matthias; Günthard, Huldrych F; Kouyos, Roger D; et al (2017). Assessing the danger of self-sustained HIV epidemics in heterosexuals by population based phylogenetic cluster analysis. eLife, 6:e28721.

Elzi, Luigia; Erb, Stefan; Furrer, Hansjakob; Cavassini, Matthias; Calmy, Alexandra; Vernazza, Pietro; Günthard, Huldrych; Bernasconi, Enos; Battegay, Manuel; Swiss HIV Cohort Study Group (2017). Adverse events of raltegravir and dolutegravir. AIDS, 31(13):1853-1858.

Blaser, Nello; Bertisch, Barbara; Kouyos, Roger D; Calmy, Alexandra; Bucher, Heiner C; Cavassini, Matthias; Estill, Janne; Keiser, Olivia; Egger, Matthias; Swiss HIV Cohort Study (2017). Impact of screening and antiretroviral therapy on anal cancer incidence in HIV-positive MSM. AIDS, 31(13):1859-1866.

Lewandowska, Dagmara W; Zagordi, Osvaldo; Geissberger, Fabienne-Desirée; Kufner, Verena; Schmutz, Stefan; Böni, Jürg; Metzner, Karin J; Trkola, Alexandra; Huber, Michael (2017). Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples. Microbiome, 5(1):94.

Wilk, C Matthias; Weber, Isabel; Seidl, Kati; Rachmühl, Carole; Holzmann-Bürgel, Anne; Müller, Antonia M S; Kuster, Stefan P; Schanz, Urs; Zinkernagel, Annelies S (2017). Impact of oral gut decontamination on staphylococcus aureus colonization in patients undergoing allogeneic hematopoietic stem cell transplantation. International Journal of Antimicrobial Agents:Epub ahead of print.

Béguelin, Charles; Suter, Annatina; Bernasconi, Enos; Fehr, Jan; Kovari, Helen; Bucher, Heiner C; Stoeckle, Marcel; Cavassini, Mathias; Rougemont, Mathieu; Schmid, Patrick; Wandeler, Gilles; Rauch, Andri; Swiss HIV Cohort Study (2017). Trends in HCV treatment uptake, efficacy and impact on liver fibrosis in the Swiss HIV Cohort Study. Liver International:Epub ahead of print.

van Ingen, Jakko; Kohl, Thomas A; Kranzer, Katharina; Hasse, Barbara; Keller, Peter M; et al (2017). Global outbreak of severe Mycobacterium chimaera disease after cardiac surgery: a molecular epidemiological study. Lancet Infectious Diseases, 17(10):1033-1041.

Salazar-Vizcaya, L; Kouyos, R D; Fehr, J; Braun, D; Estill, J; Bernasconi, E; Delaloye, J; Stöckle, M; Schmid, P; Rougemont, M; Wandeler, G; Günthard, H F; Keiser, O; Rauch, A; Swiss HIV Cohort Study (2017). On the potential of a short-term intensive intervention to interrupt HCV transmission in HIV-positive men who have sex with men: A mathematical modelling study. Journal of Viral Hepatitis:Epub ahead of print.

Sculier, Delphine; Gayet-Ageron, Angèle; Battegay, Manuel; Cavassini, Matthias; Fehr, Jan; Hirzel, Cedric; Schmid, Patrick; Bernasconi, Enos; Calmy, Alexandra; Swiss HIV Cohort Study (2017). Rilpivirine use in the Swiss HIV cohort study: a prospective cohort study. BMC Infectious Diseases, 17(1):476.

Matt, U; Selchow, P; Dal Molin, M; Strommer, S; Sharif, O; Schilcher, K; Andreoni, F; Stenzinger, A; Zinkernagel, A S; Zeitlinger, M; Sander, P; Nemeth, J (2017). Chloroquine enhances the antimycobacterial activity of isoniazid and pyrazinamide by reversing inflammation-induced macrophage efflux. International Journal of Antimicrobial Agents, 50(1):55-62.

BEEHIVE collaboration; Kouyos, Roger; Fellay, Jacques; Günthard, Huldrych F; et al (2017). Correction: Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe. PLoS Biology, 15(7):e1002608.

Kok, Yik Lim; Ciuffi, Angela; Metzner, Karin J (2017). Unravelling HIV-1 latency, one cell at a time. Trends in Microbiology, 25(11):932-941.

Poljak, M; Akova, M; Friedrich, A W; Rodríguez-Baño, J; Sanguinetti, M; Tacconelli, E; Zinkernagel, A (2017). ESCMID-an international Europe-based society committed to fostering cross-border collaboration and education to improve patient care. Clinical Microbiology and Infection:Epub ahead of print.

Audigé, Annette; Rochat, Mary-Aude; Li, Duo; Ivic, Sandra; Fahrny, Audrey; Muller, Christina K S; Gers-Huber, Gustavo; Myburgh, Renier; Bredl, Simon; Schlaepfer, Erika; Scherrer, Alexandra U; Kuster, Stefan P; Speck, Roberto F (2017). Long-term leukocyte reconstitution in NSG mice transplanted with human cord blood hematopoietic stem and progenitor cells. BMC Immunology, 18(1):28.

Bachmann, Nadine; Turk, Teja; Kadelka, Claus; Marzel, Alex; Shilaih, Mohaned; Böni, Jürg; Aubert, Vincent; Klimkait, Thomas; Leventhal, Gabriel E; Günthard, Huldrych F; Kouyos, Roger; Swiss HIV Cohort Study (2017). Parent-offspring regression to estimate the heritability of an HIV-1 trait in a realistic setup. Retrovirology, 14(1):33.

Kolios, Antonios G A; Cozzio, Antonio; Zinkernagel, Annelies S; French, Lars E; Kündig, Thomas M (2017). Cutaneous Corynebacterium Infection Presenting with Disseminated Skin Nodules and Ulceration. Case Reports in Dermatology, 9(2):8-12.

Shilaih, Mohaned; Angst, Daniel C; Marzel, Alex; Bonhoeffer, Sebastian; Günthard, Huldrych F; Kouyos, Roger D (2017). Antibacterial effects of antiretrovirals, potential implications for microbiome studies in HIV. Antiviral Therapy:Epub ahead of print.

Akers, Isabel; Weber, Rainer; Sax, Hugo; Böni, Jürg; Trkola, Alexandra; Kuster, Stefan (2017). Influence of time to diagnosis of severe influenza on antibiotic use, length of stay, isolation precautions, and mortality: a retrospective study. Influenza and Other Respiratory Viruses, 11(4):337-344.

Brandenberg, Oliver F; Magnus, Carsten; Rusert, Peter; Günthard, Huldrych F; Regoes, Roland Robert; Trkola, Alexandra (2017). Predicting HIV-1 transmission and antibody neutralization efficacy in vivo from stoichiometric parameters. PLoS Pathogens, 13(5):e1006313.

Béguelin, Charles; Friolet, Nicole; Moradpour, Darius; Sahli, Roland; Suter-Riniker, Franziska; Lüthi, Alexander; Cavassini, Matthias; Günthard, Huldrych F; Battegay, Manuel; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Atkinson, Andrew; Rauch, Andri; Wandeler, Gilles; Swiss HIV Cohort Study (2017). Impact of Tenofovir on Hepatitis Delta Virus Replication in the Swiss Human Immunodeficiency Virus Cohort Study. Clinical Infectious Diseases, 64(9):1275-1278.

Clack, Lauren; Sax, Hugo (2017). Annals for Hospitalists Inpatient Notes - Human Factors Engineering and Inpatient Care-New Ways to Solve Old Problems. Annals of Internal Medicine, 166(8):HO2-HO3.

Marzel, A; Shilaih, Mohaned; Turk, T; Campbell, Nottania K; Yang, Wan-Lin; Böni, J; Yerly, S; Klimkait, T; Aubert, V; Furrer, H; Calmy, A; Battegay, M; Cavassini, M; Bernasconi, E; Schmid, P; Metzner, K J; Gunthard, H F; Kouyos, R D; Swiss HIV Cohort Study (SHCS), et al (2017). Mining for pairs: shared clinic visit dates identify steady HIV-positive partnerships. HIV Medicine, 18(9):667-676.

Sekaggya-Wiltshire, C; von Braun, A; Scherrer, A U; Manabe, Y C; Buzibye, A; Muller, D; Ledergerber, B; Gutteck, U; Corti, N; Kambugu, A; Byakika-Kibwika, P; Lamorde, M; Castelnuovo, B; Fehr, J; Kamya, M R (2017). Anti-TB drug concentrations and drug-associated toxicities among TB/HIV-coinfected patients. Journal of Antimicrobial Chemotherapy, 72(4):1172-1177.

Rhee, Soo-Yon; Varghese, Vici; Holmes, Susan P; Van Zyl, Gert U; Steegen, Kim; Boyd, Mark A; Cooper, David A; Nsanzimana, Sabin; Saravanan, Shanmugam; Charpentier, Charlotte; de Oliveira, Tulio; Etiebet, Mary-Ann A; Garcia, Federico; Goedhals, Dominique; Gomes, Perpetua; Günthard, Huldrych F; Hamers, Raph L; Hoffmann, Christopher J; Hunt, Gillian; Jiamsakul, Awachana; Kaleebu, Pontiano; Kanki, Phyllis; Kantor, Rami; Kerschberger, Bernhard; Marconi, Vincent C; D'amour Ndahimana, Jean; Ndembi, Nicaise; Ngo-Giang-Huong, Nicole; Rokx, Casper; Santoro, Maria M; et al (2017). Mutational Correlates of Virological Failure in Individuals Receiving a WHO-Recommended Tenofovir-Containing First-Line Regimen: An International Collaboration. EBioMedicine, 18:225-235.

Rasmussen, David A; Kouyos, Roger; Günthard, Huldrych F; Stadler, Tanja (2017). Phylodynamics on local sexual contact networks. PLoS Computational Biology, 13(3):e1005448.

COHERE (2017). Is response to anti-hepatitis C virus treatment predictive of mortality in hepatitis C virus/HIV-positive patients? AIDS, 31(5):661-668.

Bragge, Peter; Grimshaw, Jeremy M; Lokker, Cynthia; Colquhoun, Heather; AIMD Writing/Working Group (2017). AIMD - a validated, simplified framework of interventions to promote and integrate evidence into health practices, systems, and policies. BMC Medical Research Methodology, 17(1):38.

Kang, Mi-Sun; Lim, Hae-Soon; Oh, Jong-Suk; Lim, You-Jin; Wuertz-Kozak, Karin; Harro, Janette M; Shirtliff, Mark E; Achermann, Yvonne (2017). Antimicrobial activity of Lactobacillus salivarius and Lactobacillus fermentum against Staphylococcus aureus. FEMS Pathogens and Disease, 75(2):ftx009.

Beauparlant, David; Rusert, Peter; Magnus, Carsten; Kadelka, Claus; Weber, Jacqueline; Uhr, Therese; Zagordi, Osvaldo; Oberle, Corinna; Duenas-Decamp, Maria J; Clapham, Paul R; Metzner, Karin J; Günthard, Huldrych F; Trkola, Alexandra (2017). Delineating CD4 dependency of HIV-1: Adaptation to infect low level CD4 expressing target cells widens cellular tropism but severely impacts on envelope functionality. PLoS Pathogens, 13(3):e1006255.

Schilcher, Katrin; Dengler Haunreiter, Vanina; Zinkernagel, Annelies S (2017). Reply to "Modulatory Effects of a Subinhibitory Concentration of Clindamycin in Community-Acquired Methicillin-Resistant Staphylococcus aureus Strains of Sequence Type 30". Antimicrobial Agents and Chemotherapy:61:3.

Oberle, Corinna S; Magnus, Carsten; Joos, Beda; Rusert, Peter; Beauparlant, David; Kouyos, Roger; Trkola, Alexandra; Metzner, Karin J; Günthard, Huldrych F (2017). Reply to correspondence 'Conserved signatures indicate HIV-1 transmission is under strong selection and thus is not a "stochastic" process' by Gonzalez et al., Retrovirology 2017. Retrovirology, 14(1):14.

Nemeth, Johannes; Vongrad, Valentina; Metzner, Karin J; Strouvelle, Victoria P; Weber, Rainer; Pedrioli, Patrick G A; Aebersold, Ruedi; Günthard, Huldrych F; Collins, Ben C (2017). In vivo and in vitro proteome analysis of Human Immunodeficiency Virus (HIV)-1-infected, human CD4(+) T cells. Molecular & Cellular Proteomics, 16(4 suppl 1):S108-S123.

Combes, Jean-Damien; Clifford, Gary M; Egger, Matthias; Cavassini, Matthias; Hirsch, Hans H; Hauser, Christoph; Calmy, Alexandra; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F; Franceschi, Silvia; Waterboer, Tim; Scherrer, Alexandra U; Swiss HIV Cohort Study (2017). Human papillomavirus antibody response following HAART initiation among MSM. AIDS, 31(4):561-569.

Kovari, Helen; Rauch, Andri; Kouyos, Roger; Rougemont, Mathieu; Cavassini, Matthias; Schmid, Patrick; Stöckle, Marcel; Bernasconi, Enos; Weber, Rainer; Ledergerber, Bruno; Swiss HIV Cohort Study (2017). Hepatitis C Infection and the Risk of Non-Liver-Related Morbidity and Mortality in HIV-Infected Persons in the Swiss HIV Cohort Study. Clinical Infectious Diseases, 64(4):490-497.

Han, Sang Hoon; Kumar, D; Ferreira, V H; Egli, A; Hirsch, H H; Weisser, M; Garzoni, C; van Delden, C; Bochud, P Y; Manuel, O; Meylan, P; Boggian, K; Husain, S; Mueller, N J; Humar, A; Swiss Transplant Cohort Study (2017). Human microRNA responses predict cytomegalovirus replication following solid organ transplantation. Journal of Infectious Diseases, 215(4):537-546.

Leimer, Nadja; Zinkernagel, Annelies S (2017). Reply to Perez and Patel. Journal of Infectious Diseases, 215(3):490-491.

Huber, M; Metzner, K J; Geissberger, F D; Shah, C; Leemann, C; Klimkait, T; Böni, J; Trkola, A; Zagordi, O (2017). MinVar: A rapid and versatile tool for HIV-1 drug resistance genotyping by deep sequencing. Journal of Virological Methods, 240:7-13.

Pulcini, Céline; Tebano, Gianpiero; Mutters, Nico T; Tacconelli, Evelina; Cambau, Emmanuelle; Kahlmeter, Gunnar; Jarlier, Vincent; EUCIC-ESGAP-EUCAST Selective Reporting Working Group (2017). Selective reporting of antibiotic susceptibility test results in European countries: an ESCMID cross-sectional survey. International Journal of Antimicrobial Agents, 49(2):162-166.

Gueler, Aysel; Moser, André; Calmy, Alexandra; Günthard, Huldrych F; Bernasconi, Enos; Furrer, Hansjakob; Fux, Christoph A; Battegay, Manuel; Cavassini, Matthias; Vernazza, Pietro; Zwahlen, Marcel; Egger, Matthias; Swiss HIV Cohort Study, Swiss National Cohort (2017). Life expectancy in HIV-positive persons in Switzerland: matched comparison with general population. AIDS, 31(3):427-436.

Andreoni, Federica; Zürcher, Claudia; Tarnutzer, Andrea; Schilcher, Katrin; Neff, Andrina; Keller, Nadia; Marques Maggio, Ewerton; Poyart, Claire; Schuepbach, Reto A; Zinkernagel, Annelies S (2017). Clindamycin affects group a streptococcus virulence factors and improves clinical outcome. Journal of Infectious Diseases, 215(2):269-277.

Schäfer, Juliane; Young, Jim; Calmy, Alexandra; Nicca, Dunja; Hasse, Barbara; Brun Del Re, Claudia; Cavassini, Matthias; Bernasconi, Enos; Schmidt-Trucksäss, Arno; Bucher, Heiner C; Swiss HIV Cohort Study (2017). High prevalence of physical inactivity among patients from the Swiss HIV cohort study. AIDS Care, 29(8):1056-1061.

Cecchinato, Valentina; Bernasconi, Enos; Speck, Roberto F; Proietti, Michele; Sauermann, Ulrike; D'Agostino, Gianluca; Danelon, Gabriela; Rezzonico Jost, Tanja; Grassi, Fabio; Raeli, Lorenzo; Schöni-Affolter, Franziska; Stahl-Hennig, Christiane; Uguccioni, Mariagrazia; Swiss HIV Cohort Study (2017). Impairment of CCR6+ and CXCR3+ th cell migration in HIV-1 infection is rescued by modulating actin polymerization. Journal of Immunology, 198(1):184-195.

Shilaih, Mohaned; Marzel, Alex; Braun, Dominique L; Scherrer, Alexandra U; Kovari, Helen; Young, Jim; Calmy, Alexandra; Darling, Katharine; Battegay, Manuel; Hoffmann, Matthias; Bernasconi, Enos; Thurnheer, Maria C; Günthard, Huldrych F; Kouyos, Roger D; Swiss HIV Cohort Study (2017). Factors associated with syphilis incidence in the HIV-infected in the era of highly active antiretrovirals. Medicine, 96(2):e5849.

Sommerstein, Rami; Schreiber, Peter W; Diekema, Daniel J; Edmond, Michael B; Hasse, Barbara; Marschall, Jonas; Sax, Hugo (2017). Mycobacterium chimaera outbreak associated with heater-cooler devices: piecing the puzzle together. Infection Control and Hospital Epidemiology, 38(1):103-108.

Clack, Lauren; Scotoni, Manuela; Wolfensberger, Aline; Sax, Hugo (2017). "First-person view" of pathogen transmission and hand hygiene - use of a new head-mounted video capture and coding tool. Antimicrobial Resistance and Infection Control, 6:108.

Bayard, Cornelia; Ledergerber, Bruno; Flepp, Markus; Lecompte, Thanh; Moulin, Estelle; Hoffmann, Matthias; Weber, Rainer; Staehelin, Cornelia; Di Benedetto, Caroline; Fux, Christoph A; Tarr, Philip E; Hasse, Barbara; Swiss HIV Cohort Study (2017). Associations Between Antiretroviral Treatment and Avascular Bone Necrosis: The Swiss HIV Cohort Study. Open Forum Infectious Diseases, 4(4):ofx177.

Quteineh, L; Bochud, P-Y; Golshayan, D; Crettol, S; Venetz, J-P; Manuel, O; Kutalik, Z; Treyer, A; Lehmann, R; Mueller, N J; Binet, I; van Delden, C; Steiger, J; Mohacsi, P; Dufour, J-F; Soccal, P M; Pascual, M; Eap, C B; Swiss Transplant Cohort Study (2017). CRTC2 polymorphism as a risk factor for the incidence of metabolic syndrome in patients with solid organ transplantation. Pharmacogenomics Journal, 17(1):69-75.

Zweifel, Sandrine A; Mihic-Probst, Daniela; Curcio, Christine A; Barthelmes, Daniel; Thielken, Andrea; Keller, Peter M; Hasse, Barbara; Böni, Christian (2017). Clinical and histopathologic ocular findings in disseminated mycobacterium chimaera infection after cardiothoracic surgery. Ophthalmology, 124(2):178-188.

Bachofner, Jacqueline A; Valli, Piero V; Kröger, Arne; Bergamin, Irina; Künzler, Patrizia; Baserga, Adriana; Braun, Dominique; Seifert, Burkhardt; Moncsek, Anja; Fehr, Jan; Semela, David; Magenta, Lorenzo; Müllhaupt, Beat; Terziroli Beretta-Piccoli, Benedetta; Mertens, Joachim C (2017). DAA treatment of chronic hepatitis C results in rapid regression of transient elastography and fibrosis markers FIB-4 and APRI. Liver International, 37(3):369-376.

Prague, Mélanie; Commenges, Daniel; Gran, Jon Michael; Ledergerber, Bruno; Young, Jim; Furrer, Hansjakob; Thiébaut, Rodolphe (2017). Dynamic models for estimating the effect of HAART on CD4 in observational studies: Application to the Aquitaine Cohort and the Swiss HIV Cohort Study. Biometrics, 73(1):294-304.

Colombo, Carlo; Merz, Brigitte; Sax, Hugo (2017). Einsatz von Sicherheitsinstrumenten im Gesundheitswesen in der Schweiz - Ergebnisse einer Umfrage in Spitälern. Suva Medical:62-76.

Hoenigl, Martin; Braun, Dominique L; Kouyos, Roger; Günthard, Huldrych F; Little, Susan J (2017). Evaluation of the predictive potential of the short acute retroviral syndrome severity score for HIV-1 disease progression in individuals with acute HIV infection. Journal of Acquired Immune Deficiency Syndromes, 74(4):e114-e117.

Sommerstein, R; Kohler, P P; Hasse, B (2017). Global Mycobacterium chimaera outbreak: challenges for the near future. Journal of Hospital Infection, 96(3):207-208.

Béguelin, Charles; Moradpour, Darius; Sahli, Roland; Suter-Riniker, Franziska; Lüthi, Alexander; Cavassini, Matthias; Günthard, Huldrych F; Battegay, Manuel; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Braun, Dominique; Furrer, Hansjakob; Rauch, Andri; Wandeler, Gilles (2017). Hepatitis delta-associated mortality in HIV/HBV-coinfected patients. Journal of Hepatology, 66(2):297-303.

Judd, A; et al; Ledergerber, B (2017). Higher rates of triple-class virological failure in perinatally HIV-infected teenagers compared with heterosexually infected young adults in Europe. HIV Medicine, 18(3):171-180.

Ghisla, Virginia; Scherrer, Alexandra U; Nicca, Dunja; Braun, Dominique L; Fehr, Jan S (2017). Incidence of hepatitis C in HIV positive and negative men who have sex with men 2000-2016: a systematic review and meta-analysis. Infection, 45(3):309-321.

Del Amo, Julia (2017). Inequalities by educational level in response to combination antiretroviral treatment and survival in HIV-positive men and women in Europe (1996-2013): a collaborative cohort study. AIDS, 31(2):253-262.

Bonani, Marco; Frey, Diana; de Rougemont, Olivier; Mueller, Nicolas J; Mueller, Thomas F; Graf, Nicole; Wüthrich, Rudolf P (2017). Infections in de novo kidney transplant recipients treated with the RANKL inhibitor denosumab. Transplantation, 101(9):2139-2145.

Lewandowska, Dagmara W; Schreiber, Peter W; Schuurmans, Macé M; Ruehe, Bettina; Zagordi, Osvaldo; Bayard, Cornelia; Greiner, Michael; Geissberger, Fabienne D; Capaul, Riccarda; Zbinden, Andrea; Böni, Jürg; Benden, Christian; Mueller, Nicolas J; Trkola, Alexandra; Huber, Michael (2017). Metagenomic sequencing complements routine diagnostics in identifying viral pathogens in lung transplant recipients with unknown etiology of respiratory infection. PLoS ONE, 12(5):e0177340.

Schreiber, Peter W; Sax, Hugo (2017). Mycobacterium chimaera infections associated with heater–cooler units in cardiac surgery. Current Opinion in Infectious Diseases, 30(4):388-394.

Husmann, Lars; Hasse, Barbara (2017). PET-CT bei vaskulärem Graft-Infekt. Zentralblatt für Chirurgie, 142(05):502-505.

Marzel, Alex; Heinrich, Henriette; Schilliger, Lukas; Fehr, Jan S; Günthard, Huldrych F; Kouyos, Roger; Rampini, Silvana K (2017). Prescription of post-exposure prophylaxis for HIV-1 in the emergency room: correct transmission risk assessment remains challenging. Journal of Acquired Immune Deficiency Syndromes, 74(4):359-366.

Martin-Gandul, Cecilia; Stampf, Susanne; Héquet, Delphine; Mueller, Nicolas J; Cusini, Alexia; van Delden, Christian; Khanna, Nina; Boggian, Katia; Hirzel, Cédric; Soccal, Paola; Hirsch, Hans H; Pascual, Manuel; Meylan, Pascal; Manuel, Oriol (2017). Preventive strategies against cytomegalovirus and incidence of α-herpesvirus infections in olid-organ transplant recipients: A nationwide cohort study. American Journal of Transplantation, 17(7):1813-1822.

Rochat, M A; Schlaepfer, E; Speck, R F (2017). Promising role of toll-like receptor 8 agonist in concert with prostratin for activation of silent HIV. Journal of Virology, 91(4):e02084-16.

Kovari, Helen; Rauch, Andri; Kouyos, Roger; Rougemont, Mathieu; Cavassini, Matthias; Schmid, Patrick; Stöckle, Marcel; Bernasconi, Enos; Weber, Rainer; Ledergerber, Bruno; Swiss HIV Cohort Study (2016). Hepatitis C infection and the risk of non-liver-related morbidity and mortality in HIV-positive persons in the Swiss HIV Cohort Study. Clinical Infectious Diseases:Epub ahead of print.

Combes, J D; Clifford, G M; Egger, M; Cavassini, M; Hirsch, H; Hauser, C; Calmy, A; Schmid, P; Bernasconi, E; Gunthard, H F; Franceschi, S; Waterboer, T; Scherrer, A U (2016). Human papillomavirus antibody response following highly active antiretroviral therapy initiation among men who have sex with men. AIDS, 31(4):561-569.

Ivic, Sandra. A gene therapy approach: gene engineering of HIV resistant cells using the humanized mouse model. 2016, University of Zurich, Faculty of Medicine.

Achermann, Yvonne. Diagnostic, Prevention, and Treatment of Periprosthetic Joint Infections (PJI). 2016, University of Zurich, Faculty of Medicine.

Rochat, Mary-Aude. HIV latency, in vitro and in vivo studies. 2016, University of Zurich, Faculty of Medicine.

Müller, Nicolas; Lenherr, Renato (2016). Spende nach Herztod und Hirntod: Gibt es einen Unterschied? In: Tag, Brigitte; Gross, Dominik; Mausbach, Julian. Transplantation – Transmortalität, Rechtliche und ethische Kontroversen. dike verlag: dike, 41.

Seidl, Kati; Leemann, Michèle; Palheiros Marques, Miguel; Rachmühl, Carole; Leimer, Nadja; Andreoni, Federica; Achermann, Yvonne; Zinkernagel, Annelies S (2016). High level methicillin resistance correlates with reduced Staphylococcus aureus endothelial cell damage. International Journal of Medical Microbiology : IJMM, 307(1):11-20.

COHERE (2016). Changing Incidence and Risk Factors for Kaposi Sarcoma by Time Since Starting Antiretroviral Therapy: Collaborative Analysis of 21 European Cohort Studies. Clinical Infectious Diseases, 63(10):1373-1379.

Günthard, Huldrych F; Scherrer, Alexandra U (2016). HIV-1 subtype C, tenofovir, and the relationship with treatment failure and drug resistance. Journal of Infectious Diseases, 214(9):1289-1291.

Furrer, Alexandra Laurentia. Genotypic and phenotypic characterization of resistant and persistant Staphylococcus aureus. 2016, University of Zurich, Faculty of Medicine.

Mertz, Dominik; Fadel, Shaza A; Lam, Po-Po; Tran, Dat; Srigley, Jocelyn A; Asner, Sandra A; Science, Michelle; Kuster, Stefan P; Nemeth, Johannes; Johnstone, Jennie; Ortiz, Justin R; Loeb, Mark (2016). Herd effect from influenza vaccination in non-healthcare settings: a systematic review of randomised controlled trials and observational studies. Eurosurveillance, 21(42):2.

Wang, Qing; De Luca, Andrea; Smith, Colette; Zangerle, Robert; Sambatakou, Helen; Bonnet, Fabrice; Smit, Colette; Schommers, Philipp; Thornton, Alicia; Berenguer, Juan; Peters, Lars; Spagnuolo, Vincenzo; Ammassari, Adriana; Antinori, Andrea; Roldan, Eugenia Quiros; Mussini, Cristina; Miro, Jose M; Konopnicki, Deborah; Fehr, Jan; Campbell, Maria A; Termote, Monique; Bucher, Heiner C; Hepatitis Coinfection and Non Hodgkin Lymphoma project team for (2016). Chronic hepatitis B and C virus infection and risk for non-hodgkin lymphoma in HIV-infected patients: a cohort study. Annals of Internal Medicine, 166(1):9-17.

Bossard, Daniel Andreas; Ledergerber, Bruno; Zingg, Patrick O; Gerber, Christian; Zinkernagel, Annelies S; Zbinden, Reinhard; Achermann, Yvonne (2016). Optimal length of cultivation time for isolation of propionibacterium acnes in suspected bone and joint infections is more than 7 days. Journal of Clinical Microbiology, 54(12):3043-3049.

Sauter, Rafael; Huang, Ruizhu; Ledergerber, Bruno; Battegay, Manuel; Bernasconi, Enos; Cavassini, Matthias; Furrer, Hansjakob; Hoffmann, Matthias; Rougemont, Mathieu; Günthard, Huldrych F; Held, Leonhard; Swiss HIV Cohort Study (2016). CD4/CD8 ratio and CD8 counts predict CD4 response in HIV-1-infected drug naive and in patients on cART. Medicine, 95(42):e5094.

Cain, Lauren E; Caniglia, Ellen C; Phillips, Andrew; Olson, Ashley; Muga, Roberto; Pérez-Hoyos, Santiago; Abgrall, Sophie; Costagliola, Dominique; Rubio, Rafael; Jarrín, Inma; Bucher, Heiner; Fehr, Jan; van Sighem, Ard; Reiss, Peter; Dabis, François; Vandenhende, Marie-Anne; Logan, Roger; Robins, James; Sterne, Jonathan A C; Justice, Amy; Tate, Janet; Touloumi, Giota; Paparizos, Vasilis; Esteve, Anna; Casabona, Jordi; Seng, Rémonie; Meyer, Laurence; Jose, Sophie; Sabin, Caroline; Hernán, Miguel A; et al (2016). Efavirenz versus boosted atazanavir-containing regimens and immunologic, virologic, and clinical outcomes: A prospective study of HIV-positive individuals. Medicine, 95(41):e5133.

Wandeler, Gilles; Mulenga, Lloyd; Vinikoor, Michael J; Kovari, Helen; Battegay, Manuel; Calmy, Alexandra; Cavassini, Matthias; Bernasconi, Enos; Schmid, Patrick; Bolton-Moore, Carolyn; Sinkala, Edford; Chi, Benjamin H; Egger, Matthias; Rauch, Andri; for IeDEA-Southern Africa and the Swiss HIV Cohort Study (2016). Liver fibrosis in treatment-naïve HIV-infected and HIV/HBV co-infected patients: Zambia and Switzerland compared. International Journal of Infectious Diseases, 51:97-102.

Schilcher, Katrin; Andreoni, Federica; Dengler Haunreiter, Vanina; Seidl, Kati; Hasse, Barbara; Zinkernagel, Annelies S (2016). Modulation of staphylococcus aureus biofilm matrix by subinhibitory concentrations of clindamycin. Antimicrobial Agents and Chemotherapy, 60(10):5957-5967.

Schreiber, Peter W; Kuster, Stefan P; Hasse, Barbara; Bayard, Cornelia; Rüegg, Christian; Kohler, Philipp; Keller, Peter M; Bloemberg, Guido V; Maisano, Francesco; Bettex, Dominique; Halbe, Maximilian; Sommerstein, Rami; Sax, Hugo (2016). Reemergence of Mycobacterium chimaera in Heater-Cooler Units despite Intensified Cleaning and Disinfection Protocol. Emerging Infectious Diseases, 22(10):1830-1833.

Franzen, Daniel; Lim, Marisa; Bratton, Daniel J; Kuster, Stefan P; Kohler, Malcolm (2016). The Roles of the Charlson Comorbidity Index and Time to First Antibiotic Dose as Predictors of Outcome in Pneumococcal Community-Acquired Pneumonia. Lung, 194(5):769-775.

Rusert, Peter; Kouyos, Roger D; Kadelka, Claus; Ebner, Hanna; Schanz, Merle; Huber, Michael; Braun, Dominique L; Hozé, Nathanael; Scherrer, Alexandra; Magnus, Carsten; Weber, Jacqueline; Uhr, Therese; Cippa, Valentina; Thorball, Christian W; Kuster, Herbert; Cavassini, Matthias; Bernasconi, Enos; Hoffmann, Matthias; Calmy, Alexandra; Battegay, Manuel; Rauch, Andri; Yerly, Sabine; Aubert, Vincent; Klimkait, Thomas; Böni, Jürg; Fellay, Jacques; Regoes, Roland R; Günthard, Huldrych F; Trkola, Alexandra (2016). Determinants of HIV-1 broadly neutralizing antibody induction. Nature Medicine, 22(11):1260-1267.

Ragonnet-Cronin, Manon L; Shilaih, Mohaned; Günthard, Huldrych F; Hodcroft, Emma B; Böni, Jürg; Fearnhill, Esther; Dunn, David; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Yang, Wan-Lin; Brown, Alison E; Lycett, Samantha J; Kouyos, Roger; Brown, Andrew J Leigh (2016). A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland. Scientific Reports, 6:32251.

Gjærde, Lars I; Shepherd, Leah; Jablonowska, Elzbieta; Lazzarin, Adriano; Rougemont, Mathieu; Darling, Katharine; Battegay, Manuel; Braun, Dominique; Martel-Laferriere, Valerie; Lundgren, Jens D; Rockstroh, Jürgen K; Gill, John; Rauch, Andri; Mocroft, Amanda; Klein, Marina B; Peters, Lars (2016). Trends in Incidences and Risk Factors for Hepatocellular Carcinoma and Other Liver Events in HIV and Hepatitis C Virus-coinfected Individuals From 2001 to 2014: A Multicohort Study. Clinical Infectious Diseases, 63(6):821-829.

Oberle, Corinna S; Joos, Beda; Rusert, Peter; Campbell, Nottania K; Beauparlant, David; Kuster, Herbert; Weber, Jacqueline; Schenkel, Corinne D; Scherrer, Alexandra U; Magnus, Carsten; Kouyos, Roger; Rieder, Philip; Niederöst, Barbara; Braun, Dominique L; Pavlovic, Jovan; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Trkola, Alexandra; Metzner, Karin J; Günthard, Huldrych F (2016). Tracing HIV-1 transmission: envelope traits of HIV-1 transmitter and recipient pairs. Retrovirology, 13(1):62.

Leimer, Nadja. Intracellular Localization, Bacterial Persistence, Small Colony Variants and Antibiotic Resistance Influence Staphylococcus aureus Pathophysiology. 2016, University of Zurich, Faculty of Medicine.

Stewardson, Andrew James; Sax, Hugo; Gayet-Ageron, Angèle; Touveneau, Sylvie; Longtin, Yves; Zingg, Walter; Pittet, Didier (2016). Enhanced performance feedback and patient participation to improve hand hygiene compliance of health-care workers in the setting of established multimodal promotion: a single-centre, cluster randomised controlled trial. Lancet Infectious Diseases, 16(12):1345-1355.

Vetter, Luzia; Schuepfer, Guido; Kuster, Stefan P; Rossi, Marco (2016). A Hospital-wide Outbreak of Serratia marcescens, and Ishikawa's "Fishbone" Analysis to Support Outbreak Control. Quality management in health care, 25(1):1-7.

Montazeri, Hesam; Kuipers, Jack; Kouyos, Roger; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Günthard, Huldrych F; Beerenwinkel, Niko (2016). Large-scale inference of conjunctive Bayesian networks. Bioinformatics, 32(17):i727-i735.

Salazar-Vizcaya, Luisa; Kouyos, Roger D; Zahnd, Cindy; Wandeler, Gilles; Battegay, Manuel; Darling, Katharine Elizabeth Anna; Bernasconi, Enos; Calmy, Alexandra; Vernazza, Pietro; Furrer, Hansjakob; Egger, Matthias; Keiser, Olivia; Rauch, Andri; Swiss HIV Cohort Study (2016). Hepatitis C virus transmission among human immunodeficiency virus-infected men who have sex with men: Modeling the effect of behavioral and treatment interventions. Hepatology, 64(6):1856-1869.

Shilaih, Mohaned; Marzel, Alex; Scherrer, Alexandra U; Braun, Dominique L; Kovari, Helen; Rougemont, Mathieu; Darling, Katharine; Battegay, Manuel; Hoffmann, Matthias; Bernasconi, Enos; Hirzel, Cedric; Günthard, Huldrych F; Kouyos, Roger D (2016). Dually Active HIV/HBV Antiretrovirals as Protection Against Incident Hepatitis B Infections: Potential for Prophylaxis. Journal of Infectious Diseases, 214(4):599-606.

Martinez-Picado, Javier; McLaren, Paul J; Erkizia, Itziar; Martin, Maureen P; Benet, Susana; Rotger, Margalida; Dalmau, Judith; Ouchi, Dan; Wolinsky, Steven M; Penugonda, Sudhir; Günthard, Huldrych F; Fellay, Jacques; Carrington, Mary; Izquierdo-Useros, Nuria; Telenti, Amalio (2016). Identification of Siglec-1 null individuals infected with HIV-1. Nature Communications, 7:12412.

Scherrer, Alexandra U; Yang, Wan-Lin; Kouyos, Roger D; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Cavassini, Matthias; Battegay, Manuel; Hauser, Christoph; Calmy, Alexandra; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F (2016). Successful Prevention of Transmission of Integrase Resistance in the Swiss HIV Cohort Study. Journal of Infectious Diseases, 214(3):399-402.

Kovari Kramer, Helen. Hepatische Morbidität und Mortalität HIV-positiver Personen ohne Hepatitis C und B Virus-Infektion. 2016, University of Zurich, Faculty of Medicine.

Scherrer, Alexandra U; Bloemberg, Guido; Zbinden, Reinhard; Zinkernagel, Annelies S; Fuchs, Claudio; Frauenfelder, Sandra; Rancic, Zoran; Mayer, Dieter; Hasse, Barbara (2016). Prosthetic vascular graft infections: bacterial cultures from negative-pressure-wound-therapy foams do not improve diagnostics. Journal of Clinical Microbiology, 54(8):2190-2193.

Maldarelli, Grace A; Piepenbrink, Kurt H; Scott, Alison J; Freiberg, Jeffrey A; Song, Yang; Achermann, Yvonne; Ernst, Robert K; Shirtliff, Mark E; Sundberg, Eric J; Donnenberg, Michael S; von Rosenvinge, Erik C (2016). Type IV pili promote early biofilm formation by Clostridium difficile. FEMS Pathogens and Disease, 74(6):ftw061.

Stuehler, Claudia; Bernardini, Claudia; Elzi, Luigia; Stoeckle, Marcel; Zimmerli, Stefan; Furrer, Hansjakob; Günthard, Huldrych F; Leibundgut-Landmann, Salomé; Battegay, Manuel; Khanna, Nina (2016). Immune recovery in HIV-infected patients after Candida esophagitis is impaired despite long-term antiretroviral therapy. AIDS, 30(12):1923-1933.

Woytschak, Janine; Keller, Nadia; Krieg, Carsten; Impellizzieri, Daniela; Thompson, Robert W; Wynn, Thomas A; Zinkernagel, Annelies S; Boyman, Onur (2016). Type 2 Interleukin-4 Receptor Signaling in Neutrophils Antagonizes Their Expansion and Migration during Infection and Inflammation. Immunity, 45(1):172-184.

Ryom, Lene; Lundgren, Jens Dilling; De Wit, Stéphane; Kovari, Helen; Reiss, Peter; Law, Matthew; El-Sadr, Wafa; Monforte, Antonella D'Arminio; Mocroft, Amanda; Smith, Colette; Fontas, Eric; Dabis, Francois; Phillips, Andrew; Sabin, Caroline; D:A:D Study Group (2016). Use of antiretroviral therapy and risk of end-stage liver disease and hepatocellular carcinoma in HIV-positive persons. AIDS, 30(11):1731-1743.

Uchiyama, Satoshi; Keller, Nadia; Schlaepfer, Erika; Grube, Christina; Schuepbach, Reto A; Speck, Roberto F; Zinkernagel, Annelies S (2016). Interferon α-enhanced clearance of group a streptococcus despite neutropenia. Journal of Infectious Diseases, 214(2):321-328.

Günthard, Huldrych F; Saag, Michael S; Benson, Constance A; del Rio, Carlos; Eron, Joseph J; Gallant, Joel E; Hoy, Jennifer F; Mugavero, Michael J; Sax, Paul E; Thompson, Melanie A; Gandhi, Rajesh T; Landovitz, Raphael J; Smith, Davey M; Jacobsen, Donna M; Volberding, Paul A (2016). Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2016 Recommendations of the International Antiviral Society-USA Panel. JAMA : the Journal of the American Medical Association, 316(2):191-210.

Héquet, Delphine; Kralidis, Georg; Carrel, Thierry; Cusini, Alexia; Garzoni, Christian; Hullin, Roger; Meylan, Pascal R; Mohacsi, Paul; Mueller, Nicolas J; Ruschitzka, Frank; Tozzi, Piergiorgio; van Delden, Christian; Weisser, Maja; Wilhelm, Markus J; Pascual, Manuel; Manuel, Oriol (2016). Ventricular assist devices as bridge to heart transplantation: impact on post-transplant infections. BMC Infectious Diseases, 16:321.

Sax, Hugo; Kuster, Stefan P; Tehrany, Yassaman Alipour; Ren, Ruoxi; Uçkay, Ilker; Agostinho, Americo; Stephan, François; Wachsmuth, Maud; Walder, Bernard; Hoffmeyer, Pierre; Pittet, Didier (2016). Eight-year sustainability of a successful intervention to prevent urinary tract infection: A mixed-methods study. American Journal of Infection Control, 44(7):820-824.

Niedrig, David; Maechler, Sarah; Hoppe, Liesa; Corti, Natascia; Kovari, Helen; Russmann, Stefan (2016). Drug safety of macrolide and quinolone antibiotics in a tertiary care hospital: administration of interacting co-medication and QT prolongation. European Journal of Clinical Pharmacology, 72(7):859-67.

Tschan-Plessl, Astrid; Stern, Martin; Schmied, Laurent; Retière, Christelle; Hirsch, Hans H; Garzoni, Christian; van Delden, Christian; Boggian, Katia; Mueller, Nicolas J; Berger, Christoph; Villard, Jean; Manuel, Oriol; Meylan, Pascal; Terszowski, Grzegorz (2016). Human cytomegalovirus infection enhances NK cell activity in vitro. Transplantation Direct, 2(7):e89.

Zahnd, Cindy; Salazar-Vizcaya, Luisa; Dufour, Jean-François; Müllhaupt, Beat; Wandeler, Gilles; Kouyos, Roger; Estill, Janne; Bertisch, Barbara; Rauch, Andri; Keiser, Olivia (2016). Modelling the impact of deferring HCV treatment on liver-related complications in HIV coinfected men who have sex with men. Journal of Hepatology, 65(1):26-32.

Stucki, David; Ballif, Marie; Egger, Matthias; Furrer, Hansjakob; Altpeter, Ekkehardt; Battegay, Manuel; Droz, Sara; Bruderer, Thomas; Coscolla, Mireia; Borrell, Sonia; Zürcher, Kathrin; Janssens, Jean-Paul; Calmy, Alexandra; Mazza Stalder, Jesica; Jaton, Katia; Rieder, Hans L; Pfyffer, Gaby E; Siegrist, Hans H; Hoffmann, Matthias; Fehr, Jan; Dolina, Marisa; Frei, Reno; Schrenzel, Jacques; Böttger, Erik C; Gagneux, Sebastien; Fenner, Lukas (2016). Standard genotyping overestimates transmission of mycobacterium tuberculosis among immigrants in a low-incidence country. Journal of Clinical Microbiology, 54(7):1862-1870.

Hatleberg, Camilla Ingrid; Ryom, Lene; El-Sadr, Wafaa; Smith, Colette; Weber, Rainer; Reiss, Peter; Fontas, Eric; Dabis, Francois; Law, Matthew; Monforte, Antonella d'Arminio; De Wit, Stephane; Mocroft, Amanda; Phillips, Andrew; Lundgren, Jens D; Sabin, Caroline (2016). Improvements over time in short-term mortality following myocardial infarction in HIV-positive individuals. AIDS, 30(10):1583-1596.

Shilaih, Mohaned; Marzel, Alex; Yang, Wan Lin; Scherrer, Alexandra U; Schüpbach, Jörg; Böni, Jürg; Yerly, Sabine; Hirsch, Hans H; Aubert, Vincent; Cavassini, Matthias; Klimkait, Thomas; Vernazza, Pietro L; Bernasconi, Enos; Furrer, Hansjakob; Günthard, Huldrych F; Kouyos, Roger (2016). Genotypic Resistance Tests Sequences Reveal the Role of Marginalized Populations in HIV-1 Transmission in Switzerland. Scientific Reports, 6:27580.

Schilcher, Katrin. Antibiotic-mediated modulation of Staphylococcus aureus virulence factors. 2016, University of Zurich, Faculty of Medicine.

Sommerstein, Rami; Rüegg, Christian; Kohler, Philipp; Bloemberg, Guido; Kuster, Stefan P; Sax, Hugo (2016). Transmission of mycobacterium chimaera from heater-cooler units during cardiac surgery despite an ultraclean air ventilation system. Emerging Infectious Diseases, 22(6):1008-1013.

Hofmann, Patrick; Hombach, Michael; Seifert, Burkhardt; Schuurmans, Macé M; Bürgi, Urs; Isenring, Bruno; Mueller, Nicolas J; Kohler, Malcolm; Benden, Christian; Huber, Lars C (2016). Isolation of Stenotrophomonas maltophilia in asymptomatic Lung Transplant Recipients: Effects of Treatment on Eradication and Outcome. Clinical Transplantation, 30(8):857-863.

Scherrer, Alexandra U; von Wyl, Viktor; Yang, Wan-Lin; Kouyos, Roger D; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Cavassini, Matthias; Battegay, Manuel; Furrer, Hansjakob; Calmy, Alexandra; Vernazza, Pietro; Bernasconi, Enos; Günthard, Huldrych F (2016). Emergence of acquired HIV-1 drug resistance almost stopped in Switzerland: A 15-year prospective cohort analysis. Clinical Infectious Diseases, 62(10):1310-1317.

Thiébaut, Rodolphe; Jarne, Ana; Routy, Jean-Pierre; Sereti, Irini; Fischl, Margaret; Ive, Prudence; Speck, Roberto F; D'Offizi, Gianpiero; Casari, Salvatore; Commenges, Daniel; Foulkes, Sharne; Natarajan, Ven; Croughs, Thérèse; Delfraissy, Jean-François; Tambussi, Guiseppe; Levy, Yves; Lederman, Michael M (2016). Repeated cycles of recombinant human interleukin 7 in HIV-infected patients with low CD4 t-cell reconstitution on antiretroviral therapy: results of 2 phase II multicenter studies. Clinical Infectious Diseases, 62(9):1178-1185.

De Luca, Andrea; Flandre, Philippe; Dunn, David; Zazzi, Maurizio; Wensing, Annemarie; Santoro, Maria Mercedes; Günthard, Huldrych F; Wittkop, Linda; Kordossis, Theodoros; Garcia, Federico; Castagna, Antonella; Cozzi-Lepri, Alessandro; Churchill, Duncan; De Wit, Stéphane; Brockmeyer, Norbert H; Imaz, Arkaitz; Mussini, Cristina; Obel, Niels; Perno, Carlo Federico; Roca, Bernardino; Reiss, Peter; Schülter, Eugen; Torti, Carlo; van Sighem, Ard; Zangerle, Robert; Descamps, Diane (2016). Improved darunavir genotypic mutation score predicting treatment response for patients infected with HIV-1 subtype B and non-subtype B receiving a salvage regimen. Journal of Antimicrobial Chemotherapy, 71(5):1352-1360.

Leierer, Gisela; Grabmeier-Pfistershammer, Katharina; Steuer, Andrea; Sarcletti, Mario; Geit, Maria; Haas, Bernhard; Taylor, Ninon; Kanatschnig, Manfred; Rappold, Michaela; Ledergerber, Bruno; Zangerle, Robert (2016). A single quantifiable viral load is predictive of virological failure in Human Immunodeficiency Virus (HIV)-infected patients on combination antiretroviral therapy: The Austrian HIV cohort study. Open Forum Infectious Diseases, 3(2):ofw089.

Junier, Thomas; Rotger, Margalida; Biver, Emmanuel; Ledergerber, Bruno; Barceló, Catalina; Bartha, Istvan; Kovari, Helen; Schmid, Patrick; Fux, Christoph; Bernasconi, Enos; Brun Del Re, Claudia; Weber, Rainer; Fellay, Jacques; Tarr, Philip E (2016). Contribution of genetic background and clinical risk factors to low-trauma fractures in human immunodeficiency virus (HIV)-positive persons: the swiss HIV cohort study. Open Forum Infectious Diseases, 3(2):ofw101.

Metzner, Karin J (2016). HIV whole-genome sequencing now: answering still-open questions. Journal of Clinical Microbiology, 54(4):834-835.

Fehr, Jan; Nicca, Dunja; Goffard, Jean-Christophe; Haerry, David; Schlag, Michael; Papastamopoulos, Vasileios; Hoepelman, Andy; Skoutelis, Athanasius; Diazaraque, Ruth; Ledergerber, Bruno (2016). Reasons for not starting antiretroviral therapy in HIV-1-infected individuals: a changing landscape. Infection, 44(4):521-529.

Nakagawa, Fumiyo; van Sighem, Ard; Thiebaut, Rodolphe; Smith, Colette; Ratmann, Oliver; Cambiano, Valentina; Albert, Jan; Amato-Gauci, Andrew; Bezemer, Daniela; Campbell, Colin; Commenges, Daniel; Donoghoe, Martin; Ford, Deborah; Kouyos, Roger; Lodwick, Rebecca; Lundgren, Jens; Pantazis, Nikos; Pharris, Anastasia; Quinten, Chantal; Thorne, Claire; Touloumi, Giota; Delpech, Valerie; Phillips, Andrew (2016). A Method to Estimate the Size and Characteristics of HIV-positive Populations Using an Individual-based Stochastic Simulation Model. Epidemiology, 27(2):247-256.

Cadosch, Dominique; Abel zur Wiesch, Pia; Kouyos, Roger; Bonhoeffer, Sebastian (2016). The Role of Adherence and Retreatment in De Novo Emergence of MDR-TB. PLoS Computational Biology, 12(3):e1004749.

Shepherd, L; Borges, Áh; Ledergerber, B; Domingo, P; Castagna, A; Rockstroh, J; Knysz, B; Tomazic, J; Karpov, I; Kirk, O; Lundgren, J; Mocroft, A (2016). Infection-related and -unrelated malignancies, HIV and the aging population. HIV Medicine, 17(8):590-600.

Noguera-Julian, M; Cozzi-Lepri, A; Di Giallonardo, F; Schuurman, R; Däumer, M; Aitken, S; Ceccherini-Silberstein, F; D'Arminio Monforte, A; Geretti, A M; Booth, C L; Kaiser, R; Michalik, C; Jansen, K; Masquelier, B; Bellecave, P; Kouyos, R D; Castro, E; Furrer, H; Schultze, A; Günthard, H F; Brun-Vezinet, F; Metzner, K J; Paredes, R (2016). Contribution of APOBEC3G/F activity to the development of low-abundance drug-resistant human immunodeficiency virus type 1 variants. Clinical Microbiology and Infection, 22(2):191-200.

Kok, Yik-Lim. Examination of HIV-1 integration sites to delineate determinants HIV-1 pathogenesis. 2016, University of Zurich, Faculty of Science.

Bossard, Daniel Andreas. Optimal length of cultivation time for isolation of Propionibacterium acnes in suspected bone and joint infections is more than 7 days. 2016, University of Zurich, Faculty of Medicine.

Seifert, David; Di Giallonardo, Francesca; Töpfer, Armin; Singer, Jochen; Schmutz, Stefan; Günthard, Huldrych F; Beerenwinkel, Niko; Metzner, Karin J (2016). A comprehensive analysis of primer IDs to study heterogeneous HIV-1 populations. Journal of Molecular Biology, 428(1):238-250.

McLaren, Paul J; Raisaro, Jean Louis; Aouri, Manel; Rotger, Margalida; Ayday, Erman; Bartha, István; Delgado, Maria B; Vallet, Yannick; F Günthard, Huldrych; Cavassini, Matthias; Furrer, Hansjakob; Doco-Lecompte, Thanh; Marzolini, Catia; Schmid, Patrick; Di Benedetto, Caroline; Decosterd, Laurent A; Fellay, Jacques; Hubaux, Jean-Pierre; Telenti, Amalio (2016). Privacy-preserving genomic testing in the clinic: a model using HIV treatment. Genetics in Medicine, 18(8):814-822.

Marzel, Alex; Shilaih, Mohaned; Yang, Wan-Lin; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Braun, Dominique L; Calmy, Alexandra; Furrer, Hansjakob; Cavassini, Matthias; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Günthard, Huldrych F; Kouyos, Roger D; Swiss HIV Cohort Study (2016). HIV-1 transmission during recent infection and during treatment interruptions as major drivers of new infections in the Swiss HIV Cohort Study. Clinical Infectious Diseases, 62(1):115-122.

Elzi, Luigia; Conen, Anna; Patzen, Annalea; Fehr, Jan; Cavassini, Matthias; Calmy, Alexandra; Schmid, Patrick; Bernasconi, Enos; Furrer, Hansjakob; Battegay, Manuel (2016). Ability to work and employment rates in human immunodeficiency virus (HIV)-1-infected individuals receiving combination antiretroviral therapy: The Swiss HIV cohort study. Open Forum Infectious Diseases, 3(1):ofw022.

Kovari, Helen; Sabin, Caroline A; Ledergerber, Bruno; Ryom, Lene; Reiss, Peter; Law, Matthew; Pradier, Christian; Dabis, Francois; d'Arminio Monforte, Antonella; Smith, Colette; de Wit, Stephane; Kirk, Ole; Lundgren, Jens D; Weber, Rainer (2016). Antiretroviral drugs and risk of chronic alanine aminotransferase elevation in human immunodeficiency virus (HIV)-monoinfected persons: the data collection on adverse events of anti-HIV drugs study. Open Forum Infectious Diseases, 3(1):ofw009.

Meloni, Monica. Cure of tuberculosis despite serum concentrations of antituberculosis drugs below published reference ranges: A retrospective analysis. 2016, University of Zurich, Faculty of Medicine.

Aouri, Manel; Barcelo, Catalina; Ternon, Béatrice; Cavassini, Matthias; Anagnostopoulos, Alexia; Yerly, Sabine; Hugues, Henry; Vernazza, Pietro; Günthard, Huldrych F; Buclin, Thierry; Telenti, Amalio; Rotger, Margalida; Decosterd, Laurent A (2016). in vivo profiling and distribution of known and novel phase I and phase II metabolites of efavirenz in plasma, urine, and cerebrospinal fluid. Drug Metabolism and Disposition, 44(1):151-161.

St John, Elizabeth P; Simen, Birgitte B; Turenchalk, Gregory S; Braverman, Michael S; Abbate, Isabella; Aerssens, Jeroen; Bouchez, Olivier; Gabriel, Christian; Izopet, Jacques; Meixenberger, Karolin; Di Giallonardo, Francesca; Schlapbach, Ralph; Paredes, Roger; Sakwa, James; Schmitz-Agheguian, Gudrun G; Thielen, Alexander; Victor, Martin; Metzner, Karin J; Däumer, Martin P (2016). A follow-up of the multicenter collaborative study on HIV-1 drug resistance and tropism testing using 454 ultra deep pyrosequencing. PLoS ONE, 11(1):e0146687.

Friis-Møller, Nina; Ryom, Lene; Smith, Colette; Weber, Rainer; Reiss, Peter; Dabis, F; De Wit, Stephane; Monforte, Antonella D'Arminio; Kirk, Ole; Fontas, Eric; Sabin, Caroline; Phillips, Andrew; Lundgren, Jens; Law, Matthew (2016). An updated prediction model of the global risk of cardiovascular disease in HIV-positive persons: The Data-collection on Adverse Effects of Anti-HIV Drugs (D:A:D) study. European Journal of Preventive Cardiology, 23(2):214-223.

Villandre, Luc; Stephens, David A; Labbe, Aurelie; Günthard, Huldrych F; Kouyos, Roger; Stadler, Tanja (2016). Assessment of overlap of phylogenetic transmission clusters and communities in simple sexual contact networks: applications to HIV-1. PLoS ONE, 11(2):e0148459.

Jeger, Victor; Hasse, Barbara; Hildenbrand, Florian (2016). CME: Bakterielle Meningitis bei Erwachsenen. Praxis, 105(23):1353-1360.

Meier, Silvan; Hasse, Barbara; Haller, Christlieb (2016). CME: Infektiöse Endokarditis. Praxis, 105(13):739-746.

Aalen, O O; Røysland, K; Gran, J M; Kouyos, R; Lange, T (2016). Can we believe the DAGs? A comment on the relationship between causal DAGs and mechanisms. Statistical Methods in Medical Research, 25(5):2294-2314.

TenoRes Study Group, xx (2016). Global epidemiology of drug resistance after failure of WHO recommended first-line regimens for adult HIV-1 infection: a multicentre retrospective cohort study. Lancet Infectious Diseases, 16(5):565-575.

Zingg, Patrick O; Achermann, Yvonne (2016). Herausforderungen in der Diagnostik der periprothetischen Infektion. Praxis, 105(17):1025-1031.

Clifford, Gary M; Franceschi, Silvia; Keiser, Olivia; Schöni-Affolter, Franziska; Lise, Mauro; Dehler, Silvia; Levi, Fabio; Mousavi, Mohsen; Bouchardy, Christine; Wolfensberger, Aline; Darling, Katharine E; Staehelin, Cornelia; Bertisch, Barbara; Kuenzli, Esther; Bernasconi, Enos; Pawlita, Michael; Egger, Matthias (2016). Immunodeficiency and the risk of cervical intra-epithelial neoplasia 2/3 and cervical cancer: A nested case-control study in the Swiss HIV Cohort Study. International Journal of Cancer, 138(7):1732-1740.

Tarr, Philip; Notter, Julia; Sydow, Véronique; Wirz, Sebastian; Wallnöfer, Astrid; Vollgraff, Michael; Neumayr, Andreas; Berger, Christoph; Battegay, Manuel; Fehr, Jan; Jackson, Yves-Lauren; Posfay-Barbe, Klara; Durieux, Sophie; Ritz, Nicole; Staehelin, Cornelia; Boillat-Blanco, Noémie; Fuchs, Simon; Martin, Brian (2016). Impfungen bei erwachsenen Flüchtlingen. Swiss Medical Forum, 16(49-50):1075-1079.

Notter, Julia; Labhardt, Niklaus; Hatz, Christoph; Wallnöfer, Astrid; Vollgraff, Michael; Ritz, Nicole; Wirz, Sebastian; Berger, Christoph; Battegay, Manuel; Neumayr, Andreas; Fehr, Jan; Jackson, Yves-Laurent; Posfay-Barbe, Klara; Durieux, Sophie; Lanz, Christian; Staehelin, Cornelia; Boillat-Blanco, Noémie; Fuchs, Simon; Martin, Brian; Tarr, Philip (2016). Infektionen bei erwachsenen Flüchtlingen. Swiss Medical Forum, 16(49-50):1067-1074.

Sabin, Caroline A; Reiss, Peter; Ryom, Lene; Phillips, Andrew N; Weber, Rainer; Law, Matthew; Fontas, Eric; Mocroft, Amanda; de Wit, Stephane; Smith, Colette; Dabis, Francois; d'Arminio Monforte, Antonella; El-Sadr, Wafaa; Lundgren, Jens D (2016). Is there continued evidence for an association between abacavir usage and myocardial infarction risk in individuals with HIV? A cohort collaboration. BMC Medicine, 14(1):61.

Kok, Yik Lim; Vongrad, Valentina; Shilaih, Mohaned; Di Giallonardo, Francesca; Kuster, Herbert; Kouyos, Roger; Günthard, Huldrych F; Metzner, Karin J (2016). Monocyte-derived macrophages exhibit distinct and more restricted HIV-1 integration site repertoire than CD4(+) T cells. Scientific Reports, 6:24157.

Leimer, Nadja; Rachmühl, Carole; Palheiros Marques, Miguel; Bahlmann, Anna Sophie; Furrer, Alexandra; Eichenseher, Fritz; Seidl, Kati; Matt, Ulrich; Loessner, Martin J; Schuepbach, Reto A; Zinkernagel, Annelies S (2016). Nonstable staphylococcus aureus small-colony variants are induced by low pH and sensitized to antimicrobial therapy by phagolysosomal alkalinization. Journal of Infectious Diseases, 213(2):305-313.

Aebi-Popp, K; Kouyos, R; Bertisch, B; Staehelin, C; Rudin, C; Hoesli, I; Stoeckle, M; Bernasconi, E; Cavassini, M; Grawe, C; Lecompte, T D; Rickenbach, M; Thorne, C; Martinez de Tejada, B; Fehr, J (2016). Postnatal retention in HIV care: insight from the Swiss HIV Cohort Study over a 15-year observational period. HIV Medicine, 17(4):280-288.

Rodger, Alison J; Cambiano, Valentina; Bruun, Tina; Vernazza, Pietro; Collins, Simon; van Lunzen, Jan; Corbelli, Giulio Maria; Estrada, Vicente; Geretti, Anna Maria; Beloukas, Apostolos; Asboe, David; Viciana, Pompeyo; Gutiérrez, Félix; Clotet, Bonaventura; Pradier, Christian; Gerstoft, Jan; Weber, Rainer; Westling, Katarina; Wandeler, Gilles; Prins, Jan M; Rieger, Armin; Stoeckle, Marcel; Kümmerle, Tim; Bini, Teresa; Ammassari, Adriana; Gilson, Richard; Krznaric, Ivanka; Ristola, Matti; Zangerle, Robert; Handberg, Pia; et al (2016). Sexual activity without condoms and risk of HIV transmission in serodifferent couples when the HIV-positive partner is using suppressive antiretroviral therapy. JAMA : the Journal of the American Medical Association, 316(2):171-182.

Achhra, A C; Mocroft, A; Reiss, P; Sabin, C; Ryom, L; de Wit, S; Smith, C J; d'Arminio Monforte, A; Phillips, A; Weber, R; Lundgren, J; Law, M G (2016). Short-term weight gain after antiretroviral therapy initiation and subsequent risk of cardiovascular disease and diabetes: the D:A:D study. HIV Medicine, 17(4):255-268.

Rampini, Silvana K; Zbinden, Andrea; Speck, Roberto F; Bloemberg, Guido V (2016). Similar efficacy of broad-range ITS PCR and conventional fungal culture for diagnosing fungal infections in non-immunocompromised patients. BMC Microbiology, 16(1):132.

Wandeler, Gilles; Kraus, David; Fehr, Jan; Conen, Anna; Calmy, Alexandra; Orasch, Christina; Battegay, Manuel; Schmid, Patrick; Bernasconi, Enos; Furrer, Hansjakob (2016). The J-curve in HIV: low and moderate alcohol intake predicts mortality but not the occurrence of major cardiovascular events. Journal of Acquired Immune Deficiency Syndromes, 71(3):302-309.

Nemeth, Johannes; Bernasconi, Enos; Heininger, Ulrich; Abbas, Mohamed; Nadal, David; Strahm, Carol; Erb, Stefan; Zimmerli, Stefan; Furrer, Hansjakob; Delaloye, Julie; Kuntzer, Thierry; Altpeter, Ekkehard; Sturzenegger, Mathias; Weber, Rainer (2016). Update of the Swiss guidelines on post-treatment Lyme disease syndrome. Swiss Medical Weekly, 146:w14353.

Saigi-Morgui, Núria; Quteineh, Lina; Bochud, Pierre-Yves; Crettol, Severine; Kutalik, Zoltán; Wojtowicz, Agnieszka; Bibert, Stéphanie; Beckmann, Sonja; Mueller, Nicolas J; Binet, Isabelle; van Delden, Christian; Steiger, Jürg; Mohacsi, Paul; Stirnimann, Guido; Soccal, Paola M; Pascual, Manuel; Eap, Chin B; Swiss Transplant Cohort Study (2016). Weighted genetic risk scores and prediction of weight gain in solid organ transplant populations. PLoS ONE, 11(10):e0164443.

Berger, Christoph; Manuel, Oriol; Müller, Nicolas (2016). Zytomegalie. Swiss Medical Forum, 16(32):635-638.

Cippà, Pietro E; Schiesser, Marc; Ekberg, Henrik; van Gelder, Teun; Mueller, Nicolas J; Cao, Claude A; Fehr, Thomas; Bernasconi, Corrado (2015). Risk Stratification for Rejection and Infection after Kidney Transplantation. Clinical Journal of the American Society of Nephrology, 10(12):2213-2220.

Martin-Gandul, C; Mueller, N J; Pascual, M; Manuel, O (2015). The impact of infection on chronic allograft dysfunction and allograft survival after solid organ transplantation. American Journal of Transplantation, 15(12):3024-3040.

Möllerherm, Helene; Neumann, Ariane; Schilcher, Katrin; Blodkamp, Stefanie; Zeitouni, Nathalie E; Dersch, Petra; Lüthje, Petra; Naim, Hassan Y; Zinkernagel, Annelies S; von Köckritz-Blickwede, Maren (2015). Yersinia enterocolitica-mediated degradation of neutrophil extracellular traps (NETs). FEMS Microbiology Letters, 362(23):fnv192.

Zingg, Walter; Holmes, Alison; Dettenkofer, Markus; Goetting, Tim; Secci, Federica; Clack, Lauren; Allegranzi, Benedetta; Magiorakos, Anna-Pelagia; Pittet, Didier (2015). Hospital organisation, management, and structure for prevention of health-care-associated infection: a systematic review and expert consensus. Lancet Infectious Diseases, 15(2):212-224.

Wensing, Annemarie M; Calvez, Vincent; Günthard, Huldrych F; Johnson, Victoria A; Paredes, Roger; Pillay, Deenan; Shafer, Robert W; Richman, Douglas D (2015). 2015 update of the drug resistance mutations in HIV-1. Topics in Antiviral Medicine, 23(4):132-141.

Denner, Joachim; Mueller, Nicolas J (2015). Preventing transfer of infectious agents. International Journal of Surgery, 23(Pt B):306-311.

Schaerer, V; Haubitz, S; Kovari, H; Ledergerber, B; Ambrosioni, J; Cavassini, M; Stoeckle, M; Schmid, P; Decosterd, L; Aouri, M; Böni, J; Günthard, H F; Furrer, H; Metzner, K J; Fehr, J; Rauch, A (2015). Protease inhibitors to treat hepatitis C in the Swiss HIV Cohort Study: high efficacy but low treatment uptake. HIV Medicine, 16(10):599-607.

Glass, Tracy R; Sterne, Jonathan A C; Schneider, Marie-Paule; De Geest, Sabina; Nicca, Dunja; Furrer, Hansjakob; Günthard, Huldrych F; Bernasconi, Enos; Calmy, Alexandra; Rickenbach, Martin; Battegay, Manuel; Bucher, Heiner C (2015). Self-reported nonadherence to antiretroviral therapy as a predictor of viral failure and mortality. AIDS, 29(16):2195-200.

Kohler, Philipp; Kuster, Stefan P; Bloemberg, Guido; Schulthess, Bettina; Frank, Michelle; Tanner, Felix C; Rössle, Matthias; Böni, Christian; Falk, Volkmar; Wilhelm, Markus J; Sommerstein, Rami; Achermann, Yvonne; Ten Oever, Jaap; Debast, Sylvia B; Wolfhagen, Maurice J H M; Brandon Bravo Bruinsma, George J; Vos, Margreet C; Bogers, Ad; Serr, Annerose; Beyersdorf, Friedhelm; Sax, Hugo; Böttger, Erik C; Weber, Rainer; van Ingen, Jakko; Wagner, Dirk; Hasse, Barbara (2015). Healthcare-associated prosthetic heart valve, aortic vascular graft, and disseminated Mycobacterium chimaera infections subsequent to open heart surgery. European Heart Journal, 36(40):2745-2753.

Young, Jim; Moodie, Erica E M; Abrahamowicz, Michal; Klein, Marina B; Weber, Rainer; Bucher, Heiner C (2015). Incomplete modeling of the effect of antiretroviral therapy on the risk of cardiovascular events. Clinical Infectious Diseases, 61(7):1206-1207.

Schuurmans, Macé M; Palheiros Marques, Miguel; Freitag, Lutz; Zinkernagel, Annelies S; Achermann, Yvonne (2015). Biofilm formation in a permanent tracheal stent implanted for twenty-five years. Respiration, 90(4):327-328.

Beeler, Patrick E; Kuster, Stefan P; Eschmann, Emmanuel; Weber, Rainer; Blaser, Jürg (2015). Earlier switching from intravenous to oral antibiotics owing to electronic reminders. International Journal of Antimicrobial Agents, 46(4):428-433.

Montazeri, Hesam; Günthard, Huldrych F; Yang, Wan-Lin; Kouyos, Roger; Beerenwinkel, Niko (2015). Estimating the dynamics and dependencies of accumulating mutations with applications to HIV drug resistance. Biostatistics, 16(4):713-726.

Salmon, S; Pittet, D; Sax, H; McLaws, M L (2015). The 'My five moments for hand hygiene' concept for the overcrowded setting in resource-limited healthcare systems. Journal of Hospital Infection, 91(2):95-99.

Lewandowska, Dagmara W; Zagordi, Osvaldo; Zbinden, Andrea; Schuurmans, Macé M; Schreiber, Peter; Geissberger, Fabienne-Desirée; Huder, Jon B; Böni, Jürg; Benden, Christian; Mueller, Nicolas J; Trkola, Alexandra; Huber, Michael (2015). Unbiased metagenomic sequencing complements specific routine diagnostic methods and increases chances to detect rare viral strains. Diagnostic Microbiology and Infectious Disease, 83(2):133-138.

von Braun, A; Sekaggya, C; Henning, L; Nakijoba, R; Kambugu, A; Fehr, J; Castelnuovo, B (2015). 'If at first you don't succeed, try again'. Looking beyond the initial results of a failed tuberculosis diagnosis. Public Health Action, 5(3):170-172.

Braun, Dominique L; Kouyos, Roger D; Balmer, Belinda; Grube, Christina; Weber, Rainer; Günthard, Huldrych F (2015). Frequency and spectrum of unexpected clinical manifestations of primary HIV-1 infection. Clinical Infectious Diseases, 61(6):1013-1021.

Kohler, Philipp; Schmidt, Axel J; Cavassini, Matthias; Furrer, Hansjakob; Calmy, Alexandra; Battegay, Manuel; Bernasconi, Enos; Ledergerber, Bruno; Vernazza, Pietro (2015). The HIV care cascade in Switzerland: reaching the UNAIDS/WHO targets for patients diagnosed with HIV. AIDS, 29(18):2509-2515.

Yang, Wan-Lin; Kouyos, Roger D; Scherrer, Alexandra U; Böni, Jürg; Shah, Cyril; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Hirzel, Cédric; Battegay, Manuel; Cavassini, Matthias; Bernasconi, Enos; Vernazza, Pietro; Held, Leonhard; Ledergerber, Bruno; Günthard, Huldrych F (2015). Assessing efficacy of different nucleos(t)ide backbones in NNRTI-containing regimens in the swiss HIV cohort study. Journal of Antimicrobial Chemotherapy:3323-3331.

Leuthard, Deborah; Berger, Christoph; Staubli, Georg; Nadal, David; Schmid, Sabine; Hamer, David; Weber, Rainer; Schlagenhauf, Patricia (2015). Management of children with travel-related illness evaluated in a pediatric emergency room. The Pediatric Infectious Disease Journal, 34(12):1279-1282.

Antinori, Andrea; Clarke, Amanda; Svedhem-Johansson, Veronika; Arribas, José R; Arenas-Pinto, Alejandro; Fehr, Jan; Gerstoft, Jan; Horban, Andrzej; Clotet, Bonaventura; Ripamonti, Diego; Girard, Pierre-Marie; Hill, Andrew M; Moecklinghoff, Christiane (2015). Week 48 efficacy and central nervous system analysis of darunavir/ritonavir monotherapy versus darunavir/ritonavir with two nucleoside analogues. AIDS, 29(14):1811-1820.

Meyer Sauteur, P M; Leimer, N; Chan, P K; Relly, C; Seidl, K; Zinkernagel, A S; Berger, C (2015). Methicillin-resistant Staphylococcus aureus eradication in young infants should include the diaper area and treat housing contacts. Acta Paediatrica:e581-e584.

Kouyos, Roger D; Günthard, Huldrych F (2015). Editorial commentary: the irreversibility of HIV drug resistance. Clinical Infectious Diseases, 61(5):837-839.

Schreiber, Peter W; Aceto, Leonardo; Korach, Raphael; Marreros, Nelson; Ryser-Degiorgis, Marie-Pierre; Günthard, Huldrych F (2015). Cluster of leptospirosis acquired through river surfing in Switzerland. Open Forum Infectious Diseases, 2(3):ofv102.

Swiss HIV Cohort Study; Kovari, Helen; Ledergerber, Bruno; et al (2015). High hepatic and extrahepatic mortality and low treatment uptake in HCV-coinfected persons in the Swiss HIV cohort study between 2001 and 2013. Journal of Hepatology, 63(3):573-580.

CoLaus Cohort; FIRE; Swiss HIV Cohort Study; et al; Hasse, Barbara (2015). Strong Impact of Smoking on Multimorbidity and Cardiovascular Risk Among Human Immunodeficiency Virus-Infected Individuals in Comparison With the General Population. Open Forum Infectious Diseases, 2(3):ofv108.

Birger, Ruthie B; Kouyos, Roger D; Cohen, Ted; Griffiths, Emily C; Huijben, Silvie; Mina, Michael; Volkova, Victoriya; Grenfell, Bryan; Metcalf, C Jessica E (2015). The potential impact of coinfection on antimicrobial chemotherapy and drug resistance. Trends in Microbiology, 23(9):537-44.

Li, Duo; Schlaepfer, Erika; Audigé, Annette; Rochat, Mary-Aude; Ivic, Sandra; Knowlton, Caitlin N; Kim, Baek; Keppler, Oliver T; Speck, Roberto F (2015). Vpx mediated degradation of SAMHD1 has only a very limited effect on lentiviral transduction rate in ex vivo cultured HSPCs. Stem Cell Research, 15(2):271-280.

Achermann, Yvonne; Seidl, Kati; Kuster, Stefan P; Leimer, Nadja; Durisch, Nina; Ajdler-Schäffler, Evelyne; Karrer, Stephan; Senn, Gabriela; Holzmann-Bürgel, Anne; Wolfensberger, Aline; Leone, Antonio; Arlettaz, Romaine; Zinkernagel, Annelies S; Sax, Hugo (2015). Epidemiology of Methicillin-Susceptible Staphylococcus aureus in a Neonatology Ward. Infection Control and Hospital Epidemiology:1-8.

Ruehe, Bettina; Capaul, Riccarda; Müller, Nadja; Sax, Hugo; Hasse, Barbara (2015). Wie lautet Ihre Diagnose? Praxis, 104(17):893-895.

von Braun, Amrei; Thomas, Yves; Sax, Hugo (2015). Do high-touch surfaces in public spaces pose a risk for influenza transmission? A virologic study during the peak of the 2009 influenza A(H1N1) pandemic in Geneva, Switzerland. American Journal of Infection Control, 43(12):1372-1373.

Wójtowicz, Agnieszka; Lecompte, T Doco; Bibert, Stephanie; Manuel, Oriol; Rüeger, Sina; Berger, Christoph; Boggian, Katia; Cusini, Alexia; Garzoni, Christian; Hirsch, Hans; Khanna, Nina; Mueller, Nicolas J; Meylan, Pascal R; Pascual, Manuel; van Delden, Christian; Bochud, Pierre-Yves (2015). PTX3 Polymorphisms and Invasive Mold Infections After Solid Organ Transplant. Clinical Infectious Diseases, 61(4):619-622.

Perkins, Molly R; Bartha, Istvan; Timmer, J Katherina; Liebner, Julia C; Wolinsky, David; Wollinsky, David; Günthard, Huldrych F; Hauser, Christoph; Bernasconi, Enos; Hoffmann, Matthias; Calmy, Alexandra; Battegay, Manuel; Telenti, Amalio; Douek, Daniel C; Fellay, Jacques (2015). The Interplay Between Host Genetic Variation, Viral Replication, and Microbial Translocation in Untreated HIV-Infected Individuals. Journal of Infectious Diseases, 212(4):578-584.

Young, Jim; Xiao, Yongling; Moodie, Erica E M; Abrahamowicz, Michal; Klein, Marina B; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Cavassini, Matthias; Cusini, Alexia; Weber, Rainer; Bucher, Heiner C (2015). Effect of Cumulating Exposure to Abacavir on the Risk of Cardiovascular Disease Events in Patients From the Swiss HIV Cohort Study. Journal of Acquired Immune Deficiency Syndromes, 69(4):413-421.

Fehr, Thomas; Cippà, Pietro E; Mueller, Nicolas J (2015). Cytomegalovirus post kidney transplantation: prophylaxis versus pre-emptive therapy? Transplant International, 28(12):1351-1356.

Yang, Wan-Lin; Kouyos, Roger; Scherrer, Alexandra U; Böni, Jürg; Shah, Cyril; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Furrer, Hansjakob; Battegay, Manuel; Cavassini, Matthias; Bernasconi, Enos; Vernazza, Pietro; Held, Leonhard; Ledergerber, Bruno; Günthard, Huldrych F; Swiss HIV Cohort Study (2015). Assessing the paradox between transmitted and acquired HIV type 1 drug resistance mutations in the Swiss HIV cohort study from 1998 to 2012. Journal of Infectious Diseases, 212(1):28-38.

Gallant, Joel E; Koenig, Ellen; Andrade-Villanueva, Jaime; Chetchotisakd, Ploenchan; DeJesus, Edwin; Antunes, Francisco; Arastéh, Keikawus; Rizzardini, Giuliano; Fehr, Jan; Liu, Hui C; Abram, Michael E; Cao, Huyen; Szwarcberg, Javier (2015). Brief report: cobicistat compared with ritonavir as a pharmacoenhancer for atazanavir in combination with emtricitabine/tenofovir disoproxil fumarate: week 144 results. Journal of Acquired Immune Deficiency Syndromes, 69(3):338-340.

Kohler, Philipp; Sommerstein, Rami; Schönrath, Felix; Ajdler-Schäffler, Evelyne; Anagnostopoulos, Alexia; Tschirky, Sandra; Falk, Volkmar; Kuster, Stefan P; Sax, Hugo (2015). Effect of perioperative mupirocin and antiseptic body wash on infection rate and causative pathogens in patients undergoing cardiac surgery. American Journal of Infection Control, 43(7):e33-e38.

Husmann, Lars; Sah, Bert-Ram; Scherrer, Alexandra; Burger, Irene A; Stolzmann, Paul; Weber, Rainer; Rancic, Zoran; Mayer, Dieter; Hasse, Barbara (2015). 18F-FDG PET/CT for therapy control in vascular graft infections: a first feasibility study. Journal of Nuclear Medicine, 56(7):1024-1029.

Sommerstein, R; Kohler, P; Wilhelm, M J; Kuster, S P; Sax, H (2015). Factors associated with methicillin-resistant coagulase-negative staphylococci as causing organisms in deep sternal wound infections after cardiac surgery. New Microbes and New Infections, 6:15-21.

Myburgh, Renier; Ivic, Sandra; Pepper, Michael S; Gers-Huber, Gustavo; Li, Duo; Audigé, Annette; Rochat, Mary-Aude; Jaquet, Vincent; Regenass, Stephan; Manz, Markus G; Salmon, Patrick; Krause, Karl-Heinz; Speck, Roberto F (2015). Lentivector knockdown of CCR5 in hematopoietic stem and progenitor cells confers functional and persistent HIV-1 resistance in humanized mice. Journal of Virology, 89(13):6761-6772.

Ussher, James E; Phalora, Prabhjeet; Cosgrove, Cormac; Hannaway, Rachel F; Rauch, Andri; Günthard, Huldrych F; Goulder, Philip; Phillips, Rodney E; Willberg, Christian B; Klenerman, Paul (2015). Molecular analyses define Vα7.2-Jα33+ MAIT cell depletion in HIV infection: a case-control study. Medicine, 94(29):e1134.

Ciaffi, Laura; Cavassini, Matthias; Genne, Daniel; Delhumeau, Cecile; Spycher Elbes, Rachel; Hill, Andrew; Wandeler, Gilles; Fehr, Jan; Stoeckle, Marcel; Schmid, Patrick; Hirschel, Bernard; Montecucco, Fabrizio; Calmy, Alexandra (2015). Switch to etravirine for HIV-positive patients receiving statin treatment: a prospective study. European Journal of Clinical Investigation, 45(7):720-730.

Boillat-Blanco, Noémie; Darling, Katharine Ea; Schoni-Affolter, Franziska; Vuichard, Danielle; Rougemont, Mathieu; Fulchini, Rosamaria; Bernasconi, Enos; Aouri, Manel; Clerc, Olivier; Furrer, Hansjakob; Günthard, Huldrych F; Cavassini, Matthias (2015). Virological outcome and management of persistent low-level viraemia in HIV-1-infected patients: 11 years of the Swiss HIV Cohort Study. Antiviral Therapy, 20(2):165-175.

Milleret, Vincent; Buzzi, Stefano; Gehrig, Peter; Ziogas, Algirdas; Grossmann, Jonas; Schilcher, Katrin; Zinkernagel, Annelies S; Zucker, Arik; Ehrbar, Martin (2015). Protein adsorption steers blood contact activation on engineered cobalt chromium alloy oxide layers. Acta Biomaterialia, 24:343-351.

Kohler, I; Kouyos, R D; Bianchi, M; Grube, C; Wyrzucki, A; Gunthard, H F; Hangartner, L (2015). The impact of vaccination on the breadth and magnitude of the antibody response to influenza A viruses in HIV-infected individuals. AIDS, 29(14):1803-1810.

Schmied, Laurent; Terszowski, Grzegorz; Gonzalez, Asensio; Schmitter, Karin; Hirsch, Hans H; Garzoni, Christian; van Delden, Christian; Boggian, Katia; Mueller, Nicolas J; Berger, Christoph; Villard, Jean; Manuel, Oriol; Meylan, Pascal; Hess, Christoph; Stern, Martin (2015). Protection from varicella zoster in solid organ transplant recipients carrying killer cell immunoglobulin-like receptor B haplotypes. Transplantation, 99(12):2651-2655.

Matter-Walstra, K W; Greiner, M; Cusini, A; Schiesser, M; Ledergerber, B; Fehr, T; Mueller, N J (2015). Stringent adherence to a cytomegalovirus-prevention protocol is associated with reduced overall costs in the first 6 months after kidney transplantation. Transplant Infectious Disease, 17(3):342-349.

Berger, Christoph; Bochud, Pierre-Yves; Boggian, Katja; Cusini, Alexia; Egli, Adrian; Garzoni, Christian; Hirsch, Hans H; Hoffmann, Matthias; Khanna, Nina; Manuel, Oriol; Meylan, Pascal; Nadal, David; van Delden, Christian; Weisser, Maja; Mueller, Nicolas J (2015). The swiss transplant cohort study: lessons from the first 6 years. Current Infectious Disease Reports, 17(6):17:29.

Olliaro, Piero L; Vaillant, Michel; Diawara, Aïssatou; Coulibaly, Jean T; Garba, Amadou; Keiser, Jennifer; King, Charles H; Knopp, Stefanie; Landouré, Aly; N'Goran, Eliézer K; Raso, Giovanna; Scherrer, Alexandra U; Sousa-Figueiredo, José Carlos; Stete, Katarina; Zhou, Xiao-Nong; Utzinger, Jürg (2015). Toward measuring schistosoma response to praziquantel treatment with appropriate descriptors of egg excretion. PLoS Neglected Tropical Diseases, 9(6):e0003821.

Wójtowicz, Agnieszka; Gresnigt, Mark S; Lecompte, Thanh; Bibert, Stephanie; Manuel, Oriol; Joosten, Leo A B; Rüeger, Sina; Berger, Christoph; Boggian, Katia; Cusini, Alexia; Garzoni, Christian; Hirsch, Hans H; Weisser, Maja; Mueller, Nicolas J; Meylan, Pascal R; Steiger, Jürg; Kutalik, Zoltan; Pascual, Manuel; van Delden, Christian; van de Veerdonk, Frank L; Bochud, Pierre-Yves (2015). IL1B and DEFB1 Polymorphisms Increase Susceptibility to Invasive Mold Infection After Solid-Organ Transplantation. Journal of Infectious Diseases, 211(10):1646-1657.

Abdelhady, Wessam; Chen, Liang; Bayer, Arnold S; Seidl, Kati; Yeaman, Michael R; Kreiswirth, Barry N; Xiong, Yan Q (2015). Early agr activation correlates with vancomycin treatment failure in multi-clonotype MRSA endovascular infections. Journal of Antimicrobial Chemotherapy, 70(5):1443-1452.

Achermann, Yvonne; Tran, Bao; Kang, Misun; Harro, Janette M; Shirtliff, Mark E (2015). Immunoproteomic identification of in vivo-produced propionibacterium acnes proteins in a rabbit biofilm infection model. Clinical and Vaccine Immunology, 22(5):467-476.

Mueller, N J; Tini, G M; Weber, A; Gaspert, A; Husmann, L; Bloemberg, G; Boehler, A; Benden, C (2015). Hepatitis From Spiroplasma sp. in an Immunocompromised Patient. American Journal of Transplantation, 15(9):2511-2516.

Swiss HIV Cohort Study; Kouyos, R D; Hasse, B; et al (2015). Increases in condomless sex in the swiss HIV cohort study. Open Forum Infectious Diseases, 2(2):1-4.

Shalova, Irina N; Lim, Jyue Yuan; Chittezhath, Manesh; Zinkernagel, Annelies S; Beasley, Federico; Hernández-Jiménez, Enrique; Toledano, Victor; Cubillos-Zapata, Carolina; Rapisarda, Annamaria; Chen, Jinmiao; Duan, Kaibo; Yang, Henry; Poidinger, Michael; Melillo, Giovanni; Nizet, Victor; Arnalich, Francisco; López-Collazo, Eduardo; Biswas, Subhra K (2015). Human monocytes undergo functional re-programming during sepsis mediated by hypoxia-inducible factor-1α. Immunity, 42(3):484-98.

Manuel, Oriol; Wójtowicz, Agnieszka; Bibert, Stéphanie; Mueller, Nicolas J; van Delden, Christian; Hirsch, Hans H; Steiger, Juerg; Stern, Martin; Egli, Adrian; Garzoni, Christian; Binet, Isabelle; Weisser, Maja; Berger, Christoph; Cusini, Alexia; Meylan, Pascal; Pascual, Manuel; Bochud, Pierre-Yves (2015). Influence of IFNL3/4 polymorphisms on the incidence of cytomegalovirus infection after solid-organ transplantation. Journal of Infectious Diseases, 211(6):906-914.

Sax, Hugo; Bloemberg, Guido; Hasse, Barbara; Sommerstein, Rami; Kohler, Philipp; Achermann, Yvonne; Rössle, Matthias; Falk, Volkmar; Kuster, Stefan P; Böttger, Erik C; Weber, Rainer (2015). Prolonged Outbreak of Mycobacterium chimaera Infection After Open-Chest Heart Surgery. Clinical Infectious Diseases, 61(1):67-75.

Metcalf, C J E; Birger, R B; Funk, S; Kouyos, R D; Lloyd-Smith, J O; Jansen, V A A (2015). Five challenges in evolution and infectious diseases. Epidemics, 10:40-44.

Yang, Wan-Lin; Kouyos, Roger D; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Scherrer, Alexandra U; Shilaih, Mohaned; Hinkley, Trevor; Petropoulos, Christos; Bonhoeffer, Sebastian; Günthard, Huldrych F (2015). Persistence of transmitted HIV-1 drug resistance mutations associated with fitness costs and viral genetic backgrounds. PLoS Pathogens, 11(3):e1004722.

Nemeth, Johannes; Oesch, Gabriela; Kuster, Stefan P (2015). Bacteriostatic versus bactericidal antibiotics for patients with serious bacterial infections: systematic review and meta-analysis. Journal of Antimicrobial Chemotherapy, 70(2):382-395.

Sah, Bert-Ram; Husmann, Lars; Mayer, Dieter; Scherrer, Alexandra U; Rancic, Zoran; Puippe, Gilbert; Weber, Rainer; Hasse, Barbara (2015). Diagnostic performance of (18)F-FDG-PET/CT in vascular graft infections. European Journal of Vascular and Endovascular Surgery, 49(4):455-464.

Vingerhoets, J; Calvez, V; Flandre, P; Marcelin, A G; Ceccherini-Silberstein, F; Perno, C F; Mercedes Santoro, M; Bateson, R; Nelson, M; Cozzi-Lepri, A; Grarup, J; Lundgren, J; Incardona, F; Kaiser, R; Sonnerborg, A; Clotet, B; Paredes, R; Günthard, Hf; Ledergerber, B; Hoogstoel, A; Nijs, S; Tambuyzer, L; Lavreys, L; Opsomer, M; Etravirine Cohort Study Group (2015). Efficacy of etravirine combined with darunavir or other ritonavir-boosted protease inhibitors in HIV-1-infected patients: an observational study using pooled European cohort data. HIV Medicine, 16(5):297-306.

Marzolini, Catia; Sabin, Caroline; Raffi, François; Siccardi, Marco; Mussini, Cristina; Launay, Odile; Burger, David; Roca, Bernardino; Fehr, Jan; Bonora, Stefano; Mocroft, Amanda; Obel, Niels; Dauchy, Frederic-Antoine; Zangerle, Robert; Gogos, Charalambos; Gianotti, Nicola; Ammassari, Adriana; Torti, Carlo; Ghosn, Jade; Chêne, Genevieve; Grarup, Jesper; Battegay, Manuel (2015). Impact of body weight on virological and immunological responses to efavirenz-containing regimens in HIV-infected, treatment-naive adults. AIDS, 29(2):193-200.

Gueler, Aysel; Schoeni-Affolter, Franziska; Moser, André; Bertisch, Barbara; Bucher, Heiner C; Calmy, Alexandra; Cavassini, Matthias; Ledergerber, Bruno; Wandeler, Gilles; Egger, Matthias (2015). Neighbourhood socio-economic position, late presentation and outcomes in people living with HIV in Switzerland. AIDS, 29(2):231-238.

Vrancken, Bram; Lemey, Philippe; Rambaut, Andrew; Bedford, Trevor; Longdon, Ben; Günthard, Huldrych F; Suchard, Marc A (2015). Simultaneously estimating evolutionary history and repeated traits phylogenetic signal: applications to viral and host phenotypic evolution. Methods in Ecology and Evolution, 6(1):67-82.

Seifert, David; Di Giallonardo, Francesca; Metzner, Karin J; Günthard, Huldrych F; Beerenwinkel, Niko (2015). A framework for inferring fitness landscapes of patient-derived viruses using quasispecies theory. Genetics, 199(1):191-203.

Swiss HIV Cohort Study; Wandeler, Gilles; Schlauri, Marion; et al (2015). Incident hepatitis C virus infections in the swiss HIV cohort study: changes in treatment uptake and outcomes between 1991 and 2013. Open Forum Infectious Diseases, 2(1):ofv026.

Schäfer, J; Young, J; Bernasconi, E; Ledergerber, B; Nicca, D; Calmy, A; Cavassini, M; Furrer, H; Battegay, M; Bucher, H C; Swiss HIV Cohort Study (2015). Predicting smoking cessation and its relapse in HIV-infected patients: the Swiss HIV Cohort Study. HIV Medicine, 16(1):3-14.

Braun, Dominique L; Rauch, Andri; Aouri, Manel; Durisch, Nina; Eberhard, Nadia; Anagnostopoulos, Alexia; Ledergerber, Bruno; Müllhaupt, Beat; Metzner, Karin J; Decosterd, Laurent; Böni, Jürg; Weber, Rainer; Fehr, Jan (2015). A lead-in with silibinin prior to triple-therapy translates into favorable treatment outcomes in difficult-to-treat HIV/Hepatitis C coinfected patients. PLoS ONE, 10(7):e0133028.

Nussbaumer-Ochsner, Yvonne; Hasse, Barbara Katharina; Valmaggia, Christophe; Krause, Martin (2015). A pneumonia leading to blindness. BMJ Case Reports, 2015:online.

Matt, Ulrich; Sharif, Omar; Martins, Rui; Knapp, Sylvia (2015). Accumulating evidence for a role of oxidized phospholipids in infectious diseases. Cellular and Molecular Life Sciences, 72(6):1059-1071.

Fitzmaurice, Karen; Hurst, Jacob; Dring, Megan; Rauch, Andri; McLaren, Paul J; Günthard, Huldrych F; Gardiner, Clair; Klenerman, Paul (2015). Additive effects of HLA alleles and innate immune genes determine viral outcome in HCV infection. Gut, 64(5):813-819.

Fehr, J; Nicca, D; Langewitz, W; Haerry, D; Battegay, M (2015). Assessing HIV-positive Persons’ Readiness to Start and Maintain ART. In: Ryom, L. EACS Guidelines. Brussels: EACS, 22-25.

Kohler, P; Clemens, R; Weber, R (2015). Aufflammen des heiligen Feuers. Swiss Medical Forum, 34:758-759.

Neukam, Karin; Munteanu, Daniela I; Rivero-Juárez, Antonio; Lutz, Thomas; Fehr, Jan; Mandorfer, Mattias; Bhagani, Sanjay; López-Cortés, Luis F; Haberl, Annette; Stoeckle, Marcel; Márquez, Manuel; Scholten, Stefan; de Los Santos-Gil, Ignacio; Mauss, Stefan; Rivero, Antonio; Collado, Antonio; Delgado, Marcial; Rockstroh, Juergen K; Pineda, Juan A (2015). Boceprevir or telaprevir based triple therapy against chronic hepatitis C in HIV coinfection: real-life safety and efficacy. PLoS ONE, 10(4):e0125080.

Seidl, Kati; Leimer, Nadja; Palheiros Marques, Miguel; Furrer, Alexandra; Holzmann-Bürgel, Anne; Senn, Gabriela; Zbinden, Reinhard; Zinkernagel, Annelies S (2015). Clonality and antimicrobial susceptibility of methicillin-resistant Staphylococcus aureus at the University Hospital Zurich, Switzerland between 2012 and 2014. Annals of Clinical Microbiology and Antimicrobials, 14(14):online.

Fehr, J. Cofactors influencing morbidity and mortality of human immunodeficiency virus infected individuals in the era of highly active antiretroviral therapy. 2015, University of Zurich, Faculty of Medicine.

Meloni, Monica; Corti, Natascia; Müller, Daniel; Henning, Lars; Gutteck, Ursula; von Braun, Amrei; Weber, Rainer; Fehr, Jan Sven (2015). Cure of tuberculosis despite serum concentrations of antituberculosis drugs below published reference ranges. Swiss Medical Weekly, 145:w14223.

Mueller, Nicolas J (2015). Cytomegalovirus: why viral dynamics matter. EBioMedicine, 2(7):631.

Myburgh, Renier. Engineering an HIV-1 resistant immune system. 2015, University of Zurich, Faculty of Science.

Wolfensberger, Aline; Durisch, Nina; Mertin, Juliane; Ajdler-Schaeffler, Evelyne; Sax, Hugo (2015). Evaluating the tolerability and acceptability of an alcohol-based hand rub - real-life experience with the WHO protocol. Antimicrobial Resistance and Infection Control, 4(18):online.

Leierer, Gisela; Grabmeier-Pfistershammer, Katharina; Steuer, Andrea; Geit, Maria; Sarcletti, Mario; Haas, Bernhard; Kanatschnig, Manfred; Rappold, Michaela; Zangerle, Robert; Ledergerber, Bruno; Taylor, Ninon; Austrian HIV Cohort Study Group (2015). Factors associated with low-level viraemia and virological failure: results from the Austrian HIV Cohort Study. PLoS ONE, 10(11):e0142923.

Anagnostopoulos, Alexia; Ledergerber, Bruno; Jaccard, René; Shaw, Susy Ann; Stoeckle, Marcel; Bernasconi, Enos; Barth, Jürgen; Calmy, Alexandra; Berney, Alexandre; Jenewein, Josef; Weber, Rainer (2015). Frequency of and risk factors for depression among participants in the Swiss HIV Cohort Study (SHCS). PLoS ONE, 10(10):e0140943.

Zimmermann, Kathrin; Bastidas, Sonia; Knecht, Leandra; Kuster, Herbert; Vavricka, Stephan R; Günthard, Huldrych F; Oxenius, Annette (2015). Gut commensal microbes do not represent a dominant antigenic source for continuous CD4+T-cell activation during HIV-1 infection. European Journal of Immunology, 45(11):3107-3113.

Bihl, Florian; Martinetti, Gladys; Wandeler, Gilles; Weber, Rainer; Ledergeber, Bruno; Calmy, Alexandra; Battegay, Manuel; Cavassini, Matthias; Vernazza, Pietro; Caminada, Anna-Paola; Rickenbach, Martin; Bernasconi, Enos (2015). HBV genotypes and response to tenofovir disoproxil fumarate in HIV/HBV-coinfected persons. BMC Gastroenterology, 15:79.

Vongrad, Valentina; Imig, Jochen; Mohammadi, Pejman; Kishore, Shivendra; Jaskiewicz, Lukasz; Hall, Jonathan; Günthard, Huldrych F; Beerenwinkel, Niko; Metzner, Karin J (2015). HIV-1 RNAs are not part of the argonaute 2 associated RNA interference pathway in macrophages. PLoS ONE, 10(7):e0132127.

Tarr, P; Schmid, P; Bernasconi, E; Stoeckle, M; Kovari, H (2015). HIV-Infektion. Swiss Medical Forum, 15(2021):479-485.

Gers-Huber, Gustavo. Identification of cellular HIV restriction factors and host-HIV interactions. 2015, University of Zurich, Faculty of Science.

Carballo, David; Delhumeau, Cécile; Carballo, Sebastian; Bähler, Caroline; Radovanovic, Dragona; Hirschel, Bernard; Clerc, Olivier; Bernasconi, Enos; Fasel, Dominique; Schmid, Patrick; Cusini, Alexia; Fehr, Jan; Erne, Paul; Keller, Pierre-Fréderic; Ledergerber, Bruno; Calmy, Alexandra (2015). Increased mortality after a first myocardial infarction in human immunodeficiency virus-infected patients; a nested cohort study. AIDS Research and Therapy, 12(4):online.

Weber, R; Huber, M; Battegay, M; Stähelin, C; Castro Batanjer, E; Calmy, A; Bregenzer, A; Bernasconi, E; Schoeni-Affolter, F; Ledergerber, B (2015). Influence of noninjecting and injecting drug use on mortality, retention in the cohort, and antiretroviral therapy, in participants in the Swiss HIV Cohort Study. HIV Medicine, 16(3):137-151.

Campos, Noëlie; Myburgh, Renier; Garcel, Aude; Vautrin, Audrey; Lapasset, Laure; Nadal, Erika Schläpfer; Mahuteau-Betzer, Florence; Najman, Romain; Fornarelli, Pauline; Tantale, Katjana; Basyuk, Eugénia; Séveno, Martial; Venables, Julian P; Pau, Bernard; Bertrand, Edouard; Wainberg, Mark A; Speck, Roberto F; Scherrer, Didier; Tazi, Jamal (2015). Long lasting control of viral rebound with a new drug ABX464 targeting Rev - mediated viral RNA biogenesis. Retrovirology, 12(30):online.

Cozzi-Lepri, Alessandro; Noguera-Julian, Marc; Di Giallonardo, Francesca; Schuurman, Rob; Däumer, Martin; Aitken, Sue; Ceccherini-Silberstein, Francesca; D'Arminio Monforte, Antonella; Geretti, Anna Maria; Booth, Clare L; Kaiser, Rolf; Michalik, Claudia; Jansen, Klaus; Masquelier, Bernard; Bellecave, Pantxika; Kouyos, Roger D; Castro, Erika; Furrer, Hansjakob; Schultze, Anna; Günthard, Huldrych F; Brun-Vezinet, Francoise; Paredes, Roger; Metzner, Karin J (2015). Low-frequency drug-resistant HIV-1 and risk of virological failure to first-line NNRTI-based ART: a multicohort European case-control study using centralized ultrasensitive 454 pyrosequencing. Journal of Antimicrobial Chemotherapy, 70(3):930-940.

Sax, H; Clack, L (2015). Mental models: a basic concept for human factors design in infection prevention. Journal of Hospital Infection, 89(4):335-339.

Weber, Rainer; Deplazes, Peter; Mathis, Alexander (2015). Microsporidia. In: Jorgensen, James H; Pfaller, Michael A; Carroll, Karen C; Funke, Guido; Landry, Marie Louise; Richter, Sandra S; Warnock, David W. Manual of Clinical Microbiology. Washington DC: ASM Press, 2209-2219.

Birger, Ruthie; Kouyos, Roger; Dushoff, Jonathan; Grenfell, Bryan (2015). Modeling the effect of HIV coinfection on clearance and sustained virologic response during treatment for hepatitis C virus. Epidemics, 12:1-10.

Achermann, Y; Glanzmann, M C (2015). PJI after elbow prosthesis. In: Zimmerli, W. Bone and Joint Infections. From Microbiology to Diagnostics and Treatment. New Jersey: Wiley Blackwell, n/a.

Schmid, Patrick; Bregenzer, Andrea; Huber, Milo; Rauch, Andri; Jochum, Wolfram; Müllhaupt, Beat; Vernazza, Pietro; Opravil, Milos; Weber, Rainer; Swiss HIV Cohort Study (2015). Progression of liver fibrosis in HIV/HCV co-infection: a comparison between non-invasive assessment methods and liver biopsy. PLoS ONE, 10(9):e0138838.

Schaerer, V. Protease inhibitors to treat hepatitis C in the Swiss HIV Cohort Study: high efficacy but low treatment uptake. 2015, University of Zurich, Faculty of Medicine.

Hachfeld, Anna; Ledergerber, Bruno; Darling, Katharine; Weber, Rainer; Calmy, Alexandra; Battegay, Manuel; Sugimoto, Kiyoshi; Di Benedetto, Caroline; Fux, Christoph A; Tarr, Philip E; Kouyos, Roger; Furrer, Hansjakob; Wandeler, Gilles (2015). Reasons for late presentation to HIV care in Switzerland. Journal of the International Aids Society, 18(1):20317.

Wójtowicz, Agnieszka; Lecompte, Thanh Doco; Bibert, Stéphanie; Manuel, Oriol; Rüeger, Sina; Berger, Christoph; Boggian, Katia; Cusini, Alexia; Garzoni, Christian; Khanna, Nina; Mueller, Nicolas J; Meylan, Pascal R; Pascual, Manuel; van Delden, Christian; Bochud, Pierre-Yves; Swiss Transplant Cohort Study (2015). Reply to Cunha et al. Clinical Infectious Diseases, 61(12):1894-1895.

Kovari, Helen; Russmann, Stefan; Ledergerber, Bruno; Müller, Daniel; Rotger, Margalida; Velli, Pablo; Cavassini, Matthias; Ambrosioni, Juan; Bregenzer, Andrea; Stöckle, Marcel; Bernasconi, Enos; Rauch, Andri; Speck, Roberto F; Swiss HIV Cohort Study (2015). Ribavirin concentrations do not predict sustained virological response in HIV/HCV-coinfected patients treated with ribavirin and pegylated interferon in the Swiss HIV Cohort Study. PLoS ONE, 10(7):e0133879.

Ponroy, Nicolas; Taveira, Aline; Mueller, Nicolas J; Millard, Anne-Laure (2015). Statins demonstrate a broad anti-cytomegalovirus activity in vitro in ganciclovir-susceptible and resistant strains. Journal of Medical Virology, 87(1):141-153.

Bayard, Cornelia; Dumoulin, Alexis; Ikenberg, Kristian; Günthard, Huldrych F (2015). Subacute, tetracycline-responsive, granulomatous osteomyelitis in an adult man, consistent with Q fever infection. BMJ Case Reports, 2015:1-4.

Itin, P; Bosshard, P; Toutous-Trellu, L; Schmidt, A J; Vernazza, P; Tarr, P; Stoeckle, M; Wymann, M P; Ciardo, D; Walser, S; Claass, J; Scheidegger, C; Lowe, N; Oertle-Meyer, D; Cavassini, M; Schmid, P; Bernasconi, E; Haerry, D; Boffi-El Amari, E; Herold, M; Klimkait, T; Kahlert, C; Furrer, H J; Lautenschlager, S; Calmy, A; Fehr, J (2015). Syphilis: diagnostic and treatment. Swiss Medical Forum, 19:459-465.

Rac, Jürgen; Haas, Florian; Schumacher, Andrina; Middeldorp, Jaap M; Delecluse, Henri-Jacques; Speck, Roberto F; Bernasconi, Michele; Nadal, David (2015). Telomerase activity impacts on epstein-barr virus infection of AGS cells. PLoS ONE, 10(4):e0123645.

Kouyos, R. The molecular epidemicology and evolution of hiv-1 in the swiss HIV cohort study. 2015, University of Zurich, Faculty of Medicine.

Zimmermann, Kathrin; Liechti, Thomas; Haas, Anna; Rehr, Manuela; Trkola, Alexandra; Günthard, Huldrych F; Oxenius, Annette (2015). The orientation of HIV-1 gp120 binding to the CD4 receptor differentially modulates CD4+ T cell activation. Journal of Immunology, 194(2):637-649.

Li, Duo. The role of SOCS in HIV-1 pathogenesis in vivo. 2015, University of Zurich, Faculty of Science.

Nischang, Marc. Towards an in vivo HIV latency model using humanized mice. 2015, ETH Zürich, Faculty of Science.

Young, Jim; Rickenbach, Martin; Calmy, Alexandra; Bernasconi, Enos; Staehelin, Cornelia; Schmid, Patrick; Cavassini, Matthias; Battegay, Manuel; Günthard, Huldrych F; Bucher, Heiner C (2015). Transient detectable viremia and the risk of viral rebound in patients from the Swiss HIV Cohort Study. BMC Infectious Diseases, 15(382):online.

Yang, Wan-Lin. Transmission of HIV-1 Drug Resistance and Efficacy of Antiretroviral Treatment in the Swiss HIV Cohort Study. 2015, University of Zurich, Faculty of Science.

Schlagenhauf, Patricia; Weld, Leisa; Goorhuis, Abraham; Gautret, Philippe; Weber, Rainer; von Sonnenburg, Frank; Lopez-Vélez, Rogelio; Jensenius, Mogens; Cramer, Jakob P; Field, Vanessa K; Odolini, Silvia; Gkrania-Klotsas, Effrossyni; Chappuis, Francois; Malvy, Denis; van Genderen, Perry J J; Mockenhaupt, Frank; Jauréguiberry, Stéphane; Smith, Catherine; Beeching, Nicholas J; Ursing, Johan; Parola, Philippe; Grobusch, Martin P (2015). Travel-associated infection presenting in Europe (2008-12): An analysis of EuroTravNet longitudinal, surveillance data, and evaluation of the effect of the pre-travel consultation. Lancet Infectious Diseases, 15(1):55-64.

Müllhaupt, Beat; Rauch, Andri; Fehr, Jan; Moradpour, Darius (2015). Treatment of Chronic Hepatitis C. SASL/SSI Guidelines 2, University of Zurich.

Zoufaly, A; Jochum, J; Hammerl, R; Nassimi, N; Raymond, Y; Burchard, G D; Schmiedel, S; Drexler, J F; Campbell, N K; Taka, N; Awasom, C; Metzner, K J; van Lunzen, J; Feldt, T (2015). Virological failure after 1 year of first-line ART is not associated with HIV minority drug resistance in rural Cameroon. Journal of Antimicrobial Chemotherapy, 70(3):922-925.

Glatz, M; Juricevic, N; Altwegg, M; Bruisten, S; Komericki, P; Lautenschlager, S; Weber, R; Bosshard, P P (2014). A multicenter prospective trial to asses a new real-time polymerase chain reaction for detection of Treponema pallidum, herpes simplex-1/2 and Haemophilus ducreyi in genital, anal and oropharyngeal ulcers. Clinical Microbiology and Infection, 20(12):O1020-7.

Büchler, Andrea C; Rampini, Silvana K; Stelling, Simon; Ledergerber, Bruno; Peter, Silke; Schweiger, Alexander; Ruef, Christian; Zbinden, Reinhard; Speck, Roberto F (2014). Antibiotic susceptibility of Clostridium difficile is similar worldwide over two decades despite widespread use of broad-spectrum antibiotics: an analysis done at the University Hospital of Zurich. BMC Infectious Diseases, 14:607.

Achermann, Y; Kerns, P; Shirtliff, M E (2014). In vivo infection studies. In: Barnes, L. Biomaterials and medical device associated infections. Cambridge UK: Woodhead Publishing, n/a.

Stern, Martin; Hirsch, Hans; Cusini, Alexia; van Delden, Christian; Manuel, Oriol; Meylan, Pascal; Boggian, Katia; Mueller, Nicolas J; Dickenmann, Michael (2014). Cytomegalovirus serology and replication remain associated with solid organ graft rejection and graft loss in the era of prophylactic treatment. Transplantation, 98(9):1013-1018.

Kouyos, Roger D; Metcalf, C Jessica E; Birger, Ruthie; Klein, Eili Y; Abel zur Wiesch, Pia; Ankomah, Peter; Arinaminpathy, Nimalan; Bogich, Tiffany L; Bonhoeffer, Sebastian; Brower, Charles; Chi-Johnston, Geoffrey; Cohen, Ted; Day, Troy; Greenhouse, Bryan; Huijben, Silvie; Metlay, Joshua; Mideo, Nicole; Pollitt, Laura C; Read, Andrew F; Smith, David L; Standley, Claire; Wale, Nina; Grenfell, Bryan (2014). The path of least resistance: aggressive or moderate treatment? Proceedings of the Royal Society of London, Series B: Biological Sciences, 281(1794):20140566.

Schanz, Merle; Liechti, Thomas; Zagordi, Osvaldo; Miho, Enkelejda; Reddy, Sai T; Günthard, Huldrych F; Trkola, Alexandra; Huber, Michael (2014). High-throughput sequencing of human immunoglobulin variable regions with subtype identification. PLoS ONE, 9(11):e111726.

Klein, Marina B; Young, Jim; Dunn, David; Ledergerber, Bruno; Sabin, Caroline; Cozzi-Lepri, Alessandro; Dabis, Francois; Harrigan, Richard; Tan, Darrell H; Walmsley, Sharon; Gill, John; Cooper, Curtis; Scherrer, Alexandra U; Mocroft, Amanda; Hogg, Robert S; Smaill, Fiona (2014). The effects of HIV-1 subtype and ethnicity on the rate of CD4 cell count decline in patients naive to antiretroviral therapy: A Canadian-European collaborative retrospective cohort study. CMAJ Open, 2(4):E318-E329.

Metzner, K J; Scherrer, A U; von Wyl, V; Böni, J; Yerly, S; Klimkait, T; Aubert, V; Furrer, H; Hirsch, H; Vernazza, P L; Cavassini, M; Calmy, A; Bernasconi, E; Weber, R; Gunthard, H F (2014). Limited clinical benefit of minority K103N and Y181C-variant detection in addition to routine genotypic resistance testing in antiretroviral therapy-naive patients. AIDS, 28(15):2231-2239.

Flückiger, Miriam; Andreisek, Gustav; Hasse, Barbara (2014). Akute Spondylodiszitis. Praxis, 103(19):1103-1113.

Schärer, Verena; Bruggmann, Philip; Müllhaupt, Beat; Fehr, Jan (2014). Behandlung der Hepatitis C - eine Revolution steht bevor. Praxis, 103(19):1123-1131.

Schlaepfer, Erika; Rochat, Mary-Aude; Duo, Li; Speck, Roberto F (2014). Triggering TLR2, -3, -4, -5, and -8 reinforces the restrictive nature of M1- and M2-polarized macrophages to HIV. Journal of Virology, 88(17):9769-9781.

Arab-Alameddine, M; Lubomirov, R; Fayet-Mello, A; Aouri, M; Rotger, M; Buclin, T; Widmer, N; Gatri, M; Ledergerber, B; Rentsch, K; Cavassini, M; Panchaud, A; Guidi, M; Telenti, A; Décosterd, L A; Csajka, C (2014). Population pharmacokinetic modelling and evaluation of different dosage regimens for darunavir and ritonavir in HIV-infected individuals. Journal of Antimicrobial Chemotherapy, 69(9):2489-2498.

Bibert, Stéphanie; Wojtowicz, Agnieszka; Taffé, Patrick; Manuel, Oriol; Bernasconi, Enos; Furrer, Hansjakob; Günthard, Huldrych F; Hoffmann, Matthias; Kaiser, Laurent; Osthoff, Michael; Cavassini, Matthias; Bochud, Pierre-Yves (2014). The IFNL3/4 ΔG variant increases susceptibility to cytomegalovirus retinitis among HIV-infected patients. AIDS, 28(13):1885-1889.

Kohler, Ines; Scherrer, A U; Zagordi, O; Bianchi, M; Wyrzucki, A; Steck, M; Ledergerber, B; Gunthard, H F; Hangartner, L (2014). Prevalence and predictors for homo- and heterosubtypic antibodies against influenza a virus. Clinical Infectious Diseases, 59(10):1386-1393.

Schilcher, Katrin; Andreoni, Federica; Uchiyama, Satoshi; Ogawa, Taiji; Schuepbach, Reto A; Zinkernagel, Annelies S (2014). Increased neutrophil extracellular trap-mediated Staphylococcus aureus clearance through inhibition of nuclease activity by clindamycin and immunoglobulin. Journal of Infectious Diseases, 210(3):473-482.

Näf, Franziska; Enzler-Tschudy, Annette; Kuster, Stefan P; Uhlig, Isabell; Steffen, Thomas (2014). Abdominal actinomycosis mimicking a malignant neoplasm. Surgical Infections, 15(4):462-463.

von Braun, Amrei; Furrer, Hansjakob; Battegay, Manuel; Calmy, Alexandra; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Weber, Rainer; Günthard, Huldrych F (2014). Antiretrovirale Therapie. Therapeutische Umschau. Revue thérapeutique, 71(8):461-468.

Braun, Dominique L; Nemeth, Johannes; Günthard, Huldrych F (2014). Die akute HIV-Infektion darf nicht verpasst werden. Therapeutische Umschau. Revue thérapeutique, 71(8):469-474.

Ledergerber, Bruno; Battegay, Manuel (2014). Epidemiologie von HIV. Therapeutische Umschau. Revue thérapeutique, 71(8):437-441.

Hasse, Barbara; Bernasconi, Enos; Furrer, Hansjakob; Eyer, Myriam M; Kovari, Helen (2014). HIV und Komorbidität. Therapeutische Umschau. Revue thérapeutique, 71(8):483-489.

Weber, Rainer; Günthard, Huldrych F (2014). HIV-Infektion heute. Therapeutische Umschau. Revue thérapeutique, 71(8):433-435.

Metzner, Karin J (2014). HIV-Infektion – Virus, Immunologie, Pathogenese. Therapeutische Umschau. Revue thérapeutique, 71(8):443-450.

Fehr, Jan; Schärer, Verena; Hirzel, Cédric; Rauch, Andri (2014). Hepatitis B und C bei HIV-Koinfektion. Therapeutische Umschau. Revue thérapeutique, 71(8):490-496.

Kaiser, P; Maggio, E M; Pfammatter, T; Misselwitz, B; Flury, S; Schneider, P M; Dutkowski, P; Breitenstein, S; Müllhaupt, B; Clavien, P A; Mueller, N J (2014). Histopathological evidence of invasive gastric mucormycosis after transarterial chemoembolization and liver transplantation. Infection, 42(4):779-83.

Clack, Lauren; Schmutz, Jan; Manser, Tanja; Sax, Hugo (2014). Infectious risk moments: a novel, human factors-informed approach to infection prevention. Infection Control and Hospital Epidemiology, 35(8):1051-1055.

Stoliaroff-Pépin, Anna; Speck, Roberto F; Vernazza, Pietro (2014). Prävention von HIV und anderen sexuell übertragbaren Infektionen. Therapeutische Umschau. Revue thérapeutique, 71(8):515-523.

Battegay, Manuel; Haerry, David Hans-U; Fehr, Jan; Staehelin, Cornelia; Wandeler, Gilles; Elzi, Luigia (2014). Psychosoziale Aspekte bei der Behandlung der HIV-Infektion. Therapeutische Umschau. Revue thérapeutique, 71(8):509-513.

Staehelin, Cornelia; Elzi, Luigia; Weber, Rainer; Furrer, Hansjakob (2014). Therapie und Prävention von opportunistischen Infektionen. Therapeutische Umschau. Revue thérapeutique, 71(8):475-482.

Günthard, Huldrych F; Aberg, Judith A; Eron, Joseph J; Hoy, Jennifer F; Telenti, Amalio; Benson, Constance A; Burger, David M; Cahn, Pedro; Gallant, Joel E; Glesby, Marshall J; Reiss, Peter; Saag, Michael S; Thomas, David L; Jacobsen, Donna M; Volberding, Paul A (2014). Antiretroviral treatment of adult HIV infection: 2014 recommendations of the International Antiviral Society-USA Panel. JAMA : the Journal of the American Medical Association, 312(4):410-425.

Achermann, Yvonne; Goldstein, Ellie J C; Coenye, Tom; Shirtliff, Mark E (2014). Propionibacterium acnes: from commensal to opportunistic biofilm-associated implant pathogen. Clinical Microbiology Reviews, 27(3):419-440.

Clotet, Bonaventura; Feinberg, Judith; van Lunzen, Jan; Khuong-Josses, Marie-Aude; Antinori, Andrea; Dumitru, Irina; Pokrovskiy, Vadim; Fehr, Jan; Ortiz, Roberto; Saag, Michael; Harris, Julia; Brennan, Clare; Fujiwara, Tamio; Min, Sherene (2014). Once-daily dolutegravir versus darunavir plus ritonavir in antiretroviral-naive adults with HIV-1 infection (FLAMINGO): 48 week results from the randomised open-label phase 3b study. Lancet, 383(9936):2222-31.

Haas, Florian; Yamauchi, Kazuma; Murat, Monika; Bernasconi, Michele; Yamanaka, Noboru; Speck, Roberto F; Nadal, David (2014). Activation of NF-κB via Endosomal Toll-like Receptor 7 (TLR7)or TLR9 Suppresses Murine Herpes Virus 68 Reactivation. Journal of Virology, 88(17):10002-10012.

Kouyos, R D; Rauch, A; Braun, D L; Yang, W-L; Böni, J; Yerly, S; Klimkait, T; Aubert, V; Shah, C; Kovari, H; Calmy, A; Cavassini, M; Battegay, M; Vernazza, P L; Bernasconi, E; Ledergerber, B; Gunthard, H F (2014). Higher Risk of Incident Hepatitis C Virus Coinfection Among Men Who Have Sex With Men, in Whom the HIV Genetic Bottleneck at Transmission Was Wide. Journal of Infectious Diseases, 210(10):1555-1561.

Braun, D L; Rauch, A; Durisch, N; Eberhard, N; Anagnostopoulos, A; Ledergerber, B; Metzner, K J; Böni, J; Weber, R; Fehr, J (2014). Efficacy of lead-in silibinin and subsequent triple therapy in difficult-to-treat HIV/hepatitis C virus-coinfected patients. HIV Medicine, 15:625-630.

Wensing, Annemarie M; Calvez, Vincent; Günthard, Huldrych F; Johnson, Victoria A; Paredes, Roger; Pillay, Deenan; Shafer, Robert W; Richman, Douglas D (2014). 2014 Update of the drug resistance mutations in HIV-1. Topics in Antiviral Medicine, 22(3):642-650.

Zingg, Walter; Huttner, Benedikt D; Sax, Hugo; Pittet, Didier (2014). Assessing the burden of healthcare-associated infections through prevalence studies: what is the best method? Infection Control and Hospital Epidemiology, 35(6):674-684.

Achermann, Y; Stasch, P; Preiss, S; Lucke, K; Vogt, M (2014). Characteristics and treatment outcomes of 69 cases with early prosthetic joint infections of the hip and knee. Infection, 42(3):511-519.

Abel zur Wiesch, Pia; Kouyos, Roger; Abel, Sören; Viechtbauer, Wolfgang; Bonhoeffer, Sebastian (2014). Cycling empirical antibiotic therapy in hospitals: Meta-analysis and models. PLoS Pathogens, 10(6):e1004225.

Clack, Lauren; Kuster, Stefan P; Giger, Heidi; Giuliani, Francesca; Sax, Hugo (2014). Low-hanging fruit for human factors design in infection prevention--still too high to reach? American Journal of Infection Control, 42(6):679-681.

Moradigaravand, Danesh; Kouyos, Roger; Hinkley, Trevor; Haddad, Mojgan; Petropoulos, Christos J; Engelstädter, Jan; Bonhoeffer, Sebastian (2014). Recombination accelerates adaptation on a large-scale empirical fitness landscape in HIV-1. PLoS Genetics, 10(6):e1004439.

Landelle, Caroline; Iten, Anne; Uçkay, Ilker; Sax, Hugo; Camus, Véronique; Cohen, Gilles; Renzi, Gesuele; Schrenzel, Jacques; Pittet, Didier; Perrier, Arnaud; Harbarth, Stephan (2014). Does colonization with methicillin-susceptible Staphylococcus aureus protect against nosocomial acquisition of methicillin-resistant S. aureus? Infection Control and Hospital Epidemiology, 35(5):527-533.

Wang, Qing; Young, Jim; Bernasconi, Enos; Vernazza, Pietro; Calmy, Alexandra; Cavassini, Matthias; Furrer, Hansjakob; Fehr, Jan; Bucher, Heiner C; Battegay, Manuel (2014). Virologic and immunologic responses in treatment-naive patients to ritonavir-boosted atazanavir or efavirenz with a common backbone. HIV Clinical Trials, 15(3):92-103.

Vongrad, Valentina. Identification of mechanisms controlling and maintaining HIV-1 latency in vivo. 2014, University of Zurich, Faculty of Science.

Wyrzucki, A; Dreyfus, C; Kohler, I; Steck, M; Wilson, I A; Hangartner, L (2014). Alternative Recognition of the Conserved Stem Epitope in Influenza A Virus Hemagglutinin by a VH3-30-Encoded Heterosubtypic Antibody. Journal of Virology, 88(12):7083-7092.

Tissot, Frédéric; Widmer, Andreas; Kuster, Stefan; Zanetti, Giorgio (2014). Enterobacteriaceae mit Breitspektrum Beta-Laktamasen (ESBL) im Spital: Neue Empfehlungen Swissnoso 2014. Empfehlungen, Swiss Noso.

Scharer, Verena; Hafner, Roland; Ciurea, Adrian; Henning, Lars; Somoskovi, Akos; Weber, Rainer; Fehr, Jan (2014). Limitations of medicine:diagnosis and therapy of <<inflammatory>> back pain. Praxis, 103(6):337-340.

Avila, Dorita; Keiser, Olivia; Egger, Matthias; Kouyos, Roger; Böni, Juerg; Yerly, Sabine; Klimkait, Thomas; Vernazza, Pietro L; Aubert, Vincent; Rauch, Andri; Bonhoeffer, Sebastian; Guenthard, Huldrych F; Stadler, Tanja; Spycher, Ben D (2014). Social Meets Molecular: Combining Phylogenetic and Latent Class Analyses to Understand HIV-1 Transmission in Switzerland. American Journal of Epidemiology, 179(12):1514-1525.

Sax, Hugo (2014). Mediendossier zu Mortalitätszahlen: Spitalhygiene als Startup-Unternehmen. Zürich: H+.

Bastidas, Sonia; Graw, Frederik; Smith, Miranda Z; Kuster, Herbert; Günthard, Huldrych F; Oxenius, Annette (2014). CD8+ T cells are activated in an antigen-independent manner in HIV-infected individuals. Journal of Immunology, 192(4):1732-1744.

Schuurmans, M M; Isenring, B D; Jungo, C; Boeni, J; Mueller, N J; Kohler, M; Benden, C (2014). Clinical features and outcomes of influenza infections in lung transplant recipients: a single-season cohort study. Transplant Infectious Disease, 16(3):430-439.

Kouyos, Roger D; Rauch, Andri; Böni, Jürg; Yerli, Sabome; Shah, Cyril; Aubert, Vincent; Klimkait, Thomas; Kovari, Helen; Calmy, Alexandra; Cavassini, Matthias; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Ledergerber, Bruno; Gunthard, Huldrych F (2014). Clustering of HCV coinfections on HIV phylogeny indicates domestic and sexual transmission of HCV. International Journal of Epidemiology, 43(3):887-896.

Di Giallonardo, Francesca. HIV-1 quasispecies analysis by next-generation sequencing to determine the mechanisms of viral evolution. 2014, University of Zurich, Faculty of Science.

Rasi, Manuela; Künzler-Heule, Patrizia; Schmid, Patrick; Semela, David; Bruggmann, Philip; Fehr, Jan; Saxer, Susi; Nicca, Dunja (2014). "Fighting an uphill battle": experience with the HCV triple therapy: a qualitative thematic analysis. BMC Infectious Diseases, 14:507.

Braun, Dominique L; Kouyos, Roger; Oberle, Corinna; Grube, Christina; Joos, Beda; Fellay, Jacques; McLaren, Paul J; Kuster, Herbert; Günthard, Huldrych F (2014). A novel acute retroviral syndrome severity score predicts the key surrogate markers for HIV-1 disease progression. PLoS ONE, 9(12):e114111.

Wolfensberger, A; Huber, M; Choschzick, M; Mueller, N J (2014). Abdominale Tuberkulose. Der Gastroenterologe, 9(4):372-377.

Braun, Julia; Held, Leonhard; Ledergerber, Bruno (2014). Accounting for baseline differences and measurement error in the analysis of change over time. Statistics in Medicine, 33(1):2-16.

Haas, Florian; Yamauchi, Kazuma; Murat, Monika; Bernasconi, Michele; Yamanaka, Noboru; Speck, Roberto F; Nadal, David (2014). Activation of NF-kappa B via endosomal toll-like receptor 7 (TLR7) or TLR9 suppresses murine herpesvirus 68 reactivation. Journal of Virology, 88(17):10002-10012.

Kovari, Helen; Michel, Simone; Tarr, Philip (2014). Altern HIV-positive Menschen schneller? Das „Metabolismus und Aging (M+A)“ Projekt der Schweizerischen HIV Kohortenstudie. Zürich, Schweiz: Aids-Hilfe Schweiz.

Simen, Birgitte B; Braverman, Michael S; Abbate, Isabella; Aerssens, Jeroen; Bidet, Yannick; Bouchez, Olivier; Gabriel, Christian; Izopet, Jacques; Kessler, Harald H; Stelzl, Evelyn; Di Giallonardo, Francesca; Schlapbach, Ralph; Radonic, Aleksander; Paredes, Roger; Recordon-Pinson, Patricia; Sakwa, James; St John, Elizabeth P; Schmitz-Agheguian, Gudrun G; Metzner, Karin J; Däumer, Martin P (2014). An international multicenter study on HIV-1 drug resistance testing by 454 ultra-deep pyrosequencing. Journal of Virological Methods, 204:31-37.

Ponroy, Nicolas. Anti-Cytomegalovirus Activity of Statins: Cellular and Molecular Mechanism. 2014, University of Zurich, Faculty of Science.

Speck, Roberto F (2014). Anti-retroviral Treatment Testing in HIV-infected Humanized Mice. In: Poluektova, Larisa; Garcia-Martinez, Victor; Koyanagi, Yoshio; Manz, Markus G; Tager, Andrew. Humanized Mice for HIV Research. s.n.: Springer, n/a.

Hässig, Annina Maria; Roos, Malgorzata; Etter, Anne; Bossart, Walter; Müller, Nicolas; Schiesser, Marc; Wüthrich, Rudolf P; Fehr, Thomas (2014). Association of BK viremia with human leukocyte antigen mismatches and acute rejection, but not with type of calcineurin inhibitor. Transplant Infectious Disease, 16(1):44-54.

Conen, Anna; Wang, Qing; Fehr, Jan (2014). Authors reply to the letter to the editor by Carrieri et al. HIV and alcohol - the ongoing debate. Journal of Acquired Immune Deficiency Syndromes, 65(4):e157-8.

Hasse, Barbara; Huttner, Angela; Huttner, Benedikt; Egger, Martin; Zanetti, Giorgio; Marschall, Jonas; Mühlemann, Katrin; Harbarth, Stephan (2014). Behandlung von unkomplizierten Harnwegsinfektionen. Guidelines, Schweizerische Gesellschaft für Infektiologie.

Pfisterer, David; Georgi, Anna; Günthard, Huldrych (2014). CME. Akute HIV-Infektion. Praxis, 103(5):247-253.

Landolt, Lea; Kovari, Helen (2014). CME. Erythema migrans. Praxis, 103(25):1491-1498.

Huser, Mélanie C; Meindl-Fridez, Claudine; Zinkernagel, Annelies S (2014). CME. Grampositives toxisches Schocksyndrom. Praxis, 103(22):1293-1301.

Orasch, Christina; Marchetti, Oscar; Garbino, Jorge; Schrenzel, Jacques; Zimmerli, Stefan; Mühlethaler, Konrad; Rossi, Marco; Pfyffer, Gaby; Ruef, Christian; Fehr, Jan; Zbinden, Reinhard; Calandra, Thierry; Bille, Jacques (2014). Candida species distribution and antifungal susceptibility testing according to European Committee on Antimicrobial Susceptibility Testing and new vs. old Clinical and Laboratory Standards Institute clinical breakpoints: a 6-year prospective candidaemia survey from the fungal infection network of Switzerland. Clinical Microbiology and Infection, 20(7):698-705.

Hasse, Barbara; Walker, A Sarah; Fehr, Jan; Furrer, Hansjakob; Hoffmann, Matthias; Battegay, Manuel; Calmy, Alexandra; Fellay, Jacques; Di Benedetto, Caroline; Weber, Rainer; Ledergerber, Bruno (2014). Co-trimoxazole prophylaxis is associated with reduced risk of incident tuberculosis in participants in the Swiss HIV Cohort Study. Antimicrobial Agents and Chemotherapy, 58(4):2363-2368.

Taveira, Aline. Comparison of human cytomegalovirus entry mechanisms into porcine and human endothelial cells. 2014, University of Zurich, Faculty of Science.

Glatz, Martin; Müllegger, Robert R; Maurer, Florian; Fingerle, Volker; Achermann, Yvonne; Wilske, Bettina; Bloemberg, Guido V (2014). Detection of Candidatus Neoehrlichia mikurensis, Borrelia burgdorferi sensu lato genospecies and Anaplasma phagocytophilum in a tick population from Austria. Ticks and Tick-borne Diseases, 5(2):139-144.

Nadal, David; Arlettaz, Romaine; Berger, Christoph (2014). Die vertikale HIV-Infektion kann heute erfolgreich verhütet werden, bleibt aber eine Herausforderung. Therapeutische Umschau. Revue thérapeutique, 71(8):503-508.

Regoes, Roland R; McLaren, Paul J; Battegay, Manuel; Bernasconi, Enos; Calmy, Alexandra; Günthard, Huldrych F; Hoffmann, Matthias; Rauch, Andri; Telenti, Amalio; Fellay, Jacques (2014). Disentangling human tolerance and resistance against HIV. PLoS Biology, 12(9):e1001951.

Abdel-Mohsen, Mohamed; Deng, Xutao; Liegler, Teri; Guatelli, John C; Salama, Mohamed S; Ghanem, Hussam El-Din A; Rauch, Andri; Ledergerber, Bruno; Deeks, Steven G; Günthard, Huldrych F; Wong, Joseph K; Pillai, Satish K (2014). Effects of alpha interferon treatment on intrinsic anti-HIV-1 immunity in vivo. Journal of Virology, 88(1):763-767.

Braun, D l; Rauch, A; Durisch, N; Eberhard, N; Anagnostopoulos, A; Ledergerber, B; Metzner, K J; Böni, J; Weber, R; Fehr, J (2014). Efficacy of lead-in silibinin and subsequent triple therapy in difficult-to-treat HIV/hepatitis C virus-coinfected patients. Neurobehavioral HIV Medicine, 15(10):625-630.

Taveira, Aline; Ponroy, Nicolas; Mueller, Nicolas J; Millard, Anne-Laure (2014). Entry of human cytomegalovirus into porcine endothelial cells depends on both the cellular vascular origin and the viral strain. Xenotransplantation, 21(4):324-340.

Oesch Nemeth, Gabriela; Nemeth, Johannes; Altpeter, Ekkehardt; Ritz, Nicole (2014). Epidemiology of childhood tuberculosis in Switzerland between 1996 and 2011. European Journal of Pediatrics, 173(4):457-462.

Lemmenmeier, E; Kohler, P; Bruderer, T; Goldenberger, D; Kleger, G-R; Schlegel, M (2014). First documented outbreak of KPC-2-producing Klebsiella pneumoniae in Switzerland: infection control measures and clinical management. Infection, 42(3):529-534.

Xiao, Yongling; Abrahamowicz, Michal; Moodie, Erica E M; Weber, Rainer; Young, James (2014). Flexible marginal structural models for estimating the cumulative effect of a time-dependent treatment on the hazard: reassessing the cardiovascular risks of didanosine treatment in the Swiss HIV cohort study. Journal of the American Statistical Association, 109(506):455-464.

Di Giallonardo, Francesca; Töpfer, Armin; Rey, Melanie; Prabhakaran, Sandhya; Duport, Yannick; Leemann, Christine; Schmutz, Stefan; Campbell, Nottania K; Joos, Beda; Lecca, Maria Rita; Patrignani, Andrea; Däumer, Martin; Beisel, Christian; Rusert, Peter; Trkola, Alexandra; Günthard, Huldrych F; Roth, Volker; Beerenwinkel, Niko; Metzner, Karin J (2014). Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations. Nucleic Acids Research, 42(14):e115.

Hernandez, D; Seidl, K; Corvaglia, A-R; Bayer, A S; Xiong, Y Q; Francois, P (2014). Genome Sequences of Sequence Type 45 (ST45) Persistent Methicillin-Resistant Staphylococcus aureus (MRSA) Bacteremia Strain 300-169 and ST45 Resolving MRSA Bacteremia Strain 301-188. Genome Announcements, 2(2):e00174-14.

Toutous Trellu, Laurence; Oertle, Daniel; Itin, Peter; Scheidegger, Claude; Stoeckle, Marcel; Schmid, Patrick; Bernasconi, Enos; Cavassini, Matthias; Boffi El Amari, Emmanuelle; Kahlert, Christian; Vernazza, Pietro; Fehr, Jan; Calmy, Alexandra; Low, Nicola; Martinetti Lucchini, Gladys; Tarr, Philip (2014). Gonorrhoe: neue Empfehlungen zu Diagnostik und Behandlung. Swiss Medical Forum, 14(20):407-409.

Bansal Zweifel, Vineeta; Berger, Christoph; Nadal, David; Grawe, Claudia (2014). HIV und Schwangerschaft. Therapeutische Umschau. Revue thérapeutique, 71(8):498-502.

Schüpbach, Jörg; Berger, Christoph; Böni, Jürg; Speck, Roberto F (2014). HIV-Diagnostik in der Schweiz und ärztlicher Abklärungsgang von HIV-Infizierten. Therapeutische Umschau. Revue thérapeutique, 71(8):451-460.

Bucheli, E; Kralidis, G; Boggian, K; Cusini, A; Garzoni, C; Manuel, O; Meylan, P R A; Mueller, N J; Khanna, N; van Delden, C; Berger, C; Koller, M T; Weisser, M (2014). Impact of enterococcal colonization and infection in solid organ transplantation recipients from the Swiss Transplant Cohort Study. Transplant Infectious Disease, 16(1):26-36.

Abdelhady, W; Bayer, A S; Seidl, K; Moormeier, D E; Bayles, K W; Cheung, A; Yeaman, M R; Xiong, Y Q (2014). Impact of vancomycin on sarA-mediated biofilm formation: role in persistent endovascular infections due to methicillin-resistant staphylococcus aureus. Journal of Infectious Diseases, 209(8):1231-1240.

Miro, J M; Agueero, F; Duclos-Vallee, J-C; Mueller, N J; Grossi, P; Moreno, A (2014). Infections in solid organ transplant HIV-infected patients. Clinical Microbiology and Infection, 20(s7):119-130.

Grankvist, Anna; Andersson, Per-Ola; Mattsson, Mattias; Sender, Monica; Vaht, Krista; Höper, Linnea; Sakiniene, Egidija; Trysberg, Estelle; Stenson, Martin; Fehr, Jan; Pekova, Sona; Bogdan, Christian; Bloemberg, Guido; Wennerås, Christine (2014). Infections with the tick-borne bacterium "Candidatus Neoehrlichia mikurensis" mimic noninfectious conditions in patients with B cell malignancies or autoimmune diseases. Clinical Infectious Diseases, 58(12):1716-1722.

Flammer Anikpeh, Yvonne; Grimm, Felix; Lindenblatt, Nicole; Zinkernagel, Annelies (2014). It isn't always caviar. BMJ Case Reports, 2014:1-8.

Gonzalez, A; Schmitter, K; Hirsch, H H; Garzoni, C; van Delden, C; Boggian, K; Mueller, N J; Berger, C; Villard, J; Manuel, O; Meylan, P; Stern, M; Hess, C (2014). KIR-associated protection from CMV replication requires pre-existing immunity: a prospective study in solid organ transplant recipients. Genes and immunity, 15(7):495-499.

Hasse, Barbara. Klinischer Langzeitverlauf der HIV Infektion: Resultate der Schweizerischen HIV Kohortenstudie. 2014, University of Zurich, Faculty of Medicine.

Lesurtel, Mickaël; Raptis, Dimitri A; Melloul, Emmanuel; Schlegel, Andrea; Oberkofler, Christian; El-Badry, Ashraf Mohammad; Weber, Annina; Mueller, Nicolas; Dutkowski, Philipp; Clavien, Pierre-Alain (2014). Low Platelet Counts after Liver Transplantation Predict Early Post-Transplant Survival: The "60-5 Criterion". Liver Transplantation, 20(2):147-155.

von Braun, A; Braun, D L; Kamarachev, J; Gunthard, H F (2014). New Onset of Kaposi Sarcoma in a Human Immunodeficiency Virus-1-Infected Homosexual Man, Despite Early Antiretroviral Treatment, Sustained Viral Suppression, and Immune Restoration. Open Forum Infectious Diseases, 1(1):ofu005.

Durisch, N; Mueller, N (2014). Norovirus-Gastroenteritis. Der Gastroenterologe, 9(4):360-365.

Hasse, B; Iff, M; Ledergerber, B; et al; Böni, J (2014). Obesity trends and body mass index changes after starting antiretroviral treatment: The Swiss HIV cohort study. Open Forum Infectious Diseases, 1(2):ofu040.

Myburgh, Renier; Cherpin, Ophélie; Schlaepfer, Erika; Rehrauer, Hubert; Speck, Roberto F; Krause, Karl-Heinz; Salmon, Patrick (2014). Optimization of critical hairpin features allows miRNA-based gene knockdown upon single-copy transduction. Molecular Therapy - Nucleic Acids, 3:e207.

Ueda, Seigo; Uchiyama, Satoshi; Azzi, Tarik; Gysin, Claudine; Berger, Christoph; Bernasconi, Michele; Harabuchi, Yasuaki; Zinkernagel, Annelies S; Nadal, David (2014). Oropharyngeal group A streptococcal colonization disrupts latent epstein-barr virus infection. Journal of Infectious Diseases, 209(2):255-264.

Brandenberg, Oliver F; Rusert, Peter; Magnus, Carsten; Weber, Jacqueline; Böni, Jürg; Günthard, Huldrych F; Regoes, Roland R; Trkola, Alexandra (2014). Partial rescue of V1V2 mutant infectivity by HIV-1 cell-cell transmission supports the domain’s exceptional capacity for sequence variation. Retrovirology, 11:75.

Osterhoff, Georg; Spirig, José; Klasen, Jürgen; Kuster, Stefan P; Zinkernagel, Annelies S; Sax, Hugo; Min, Kan (2014). Perforation and bacterial contamination of microscope covers in lumbar spinal decompressive surgery. Medical Principles and Practice, 23(4):302-306.

Gonzalez, David J; Vuong, Lisa; Gonzalez, Isaiah S; Keller, Nadia; McGrosso, Dominic; Hwang, John H; Hung, Jun; Zinkernagel, Annelies; Dixon, Jack E; Dorrestein, Pieter C; Nizet, Victor (2014). Phenol soluble modulin (PSM) variants of community-associated methicillin-resistant Staphylococcus aureus (MRSA) captured using mass spectrometry-based molecular networking. Molecular & Cellular Proteomics, 13(5):1262-1272.

von Braun, Amrei; Sommerstein, Rami; Weber, Rainer; Fehr, Jan (2014). Pneumonie beim Erwachsenen. Teil 1: Die ambulant erworbene Pneumonie. Swiss Medical Forum, 14(31-32):560-565.

Sommerstein, Rami; von Braun, Amrei; Weber, Rainer; Fehr, Jan (2014). Pneumonie beim Erwachsenen. Teil 2: Die im Spital erworbene Pneumonie. Swiss Medical Forum, 14(33):590-593.

Mertz, Dominik; Kim, Tae Hyong; Johnstone, Jennie; Lam, Po-Po; Science, Michelle; Kuster, Stefan P; Fadel, Shaza A; Tran, Dat; Fernandez, Eduardo; Bhatnagar, Neera; Loeb, Mark (2014). Populations at risk for severe or complicated Avian Influenza H5N1: a systematic review and meta-analysis. PLoS ONE, 9(3):e89697.

Boffi El Amari, Emmanuelle; Schmid, Patrick; Bernasconi, Enos; Cavassini, Matthias; Furrer, Hansjakob; Kahlert, Christian; Oertle, Daniel; Scheidegger, Claude; Stoeckle, Marcel; Haerry, David; Tarr, Philip; Toutous-Trellu, Laurence; Vernazza, Pietro; Fehr, Jan; Calmy, Alexandra (2014). Postexpositionelle Prophylaxe (PEP) von HIV ausserhalb des Medizinalbereichs. Swiss Medical Forum, 14(8):151-153.

Maurer, F; Castelberg, C; von Braun, A; Wolfensberger, A; Bloemberg, G; Bottger, E; Somoskovi, A (2014). Postsurgical wound infections due to rapidly growing mycobacteria in Swiss medical tourists following cosmetic surgery in Latin America between 2012 and 2014. Eurosurveillance, 19(37):pii=20905.

Buetikofer, Simon; Wandeler, Gilles; Kouyos, Roger D; Weber, Rainer; Ledergerber, Bruno (2014). Prevalence and risk factors of late presentation for HIV diagnosis and care in a tertiary referral centre in Switzerland. Swiss Medical Weekly, 144:w13961.

Bütikofer, Simon. Prevalence and risk factors of late presentation for HIV diagnosis and care in a tertiary referral centre in Switzerland. 2014, University of Zurich, Faculty of Medicine.

Fröhlich, Martin R; Meier, Marie-Theres; Staudacher, Diana; Schubert, Maria (2014). Prevention of ventilator associated pneumonia at the University of Zurich intensive care unit. Ventilator associated pneumonia - an intensive problem. Krankenpflege. Soins infirmiers, 107(9):30-31.

Kuster, Stefan P; Rudnick, Wallis; Shigayeva, Altynay; Green, Karen; Baqi, Mahin; Gold, Wayne L; Lovinsky, Reena; Muller, Matthew P; Powis, Jeff E; Rau, Neil; Simor, Andrew E; Walmsley, Sharon L; Low, Donald E; McGeer, Allison (2014). Previous antibiotic exposure and antimicrobial resistance in invasive pneumococcal disease: results from prospective surveillance. Clinical Infectious Diseases, 59(7):944-952.

Althaus, Christian L; Joos, Beda; Perelson, Alan S; Günthard, Huldrych F (2014). Quantifying the turnover of transcriptional subclasses of HIV-1-infected cells. PLoS Computational Biology, 10(10):e1003871.

Abdel-Mohsen, Mohamed; Deng, Xutao; Danesh, Ali; Liegler, Teri; Jacobs, Evan S; Rauch, Andri; Ledergerber, Bruno; Norris, Philip J; Günthard, Huldrych F; Wong, Joseph K; Pillai, Satish K (2014). Role of microRNA modulation in the interferon-α/ribavirin suppression of HIV-1 in vivo. PLoS ONE, 9(10):e109220.

Uçkay, Ilker; Sax, Hugo; Hoffmeyer, Pierre; Lew, Daniel; Pittet, Didier (2014). Severe soft-tissue infections. In: Bersten, Andrew; Soni, Neil. Oh’s intensive care manual. London: Elsevier, 733.

Guennewig, Boris; Roos, Martina; Dogar, Afzal M; Gebert, Luca F R; Zagalak, Julian A; Vongrad, Valentina; Metzner, Karin J; Hall, Jonathan (2014). Synthetic pre-microRNAs reveal dual-strand activity of miR-34a on TNF-α. RNA, 20(1):61-75.

Andreoni, Federica; Ogawa, Taiji; Ogawa, Mariko; Madon, Jerzy; Uchiyama, Satoshi; Schuepbach, Reto A; Zinkernagel, Annelies S (2014). The IL-8 protease SpyCEP is detrimental for Group A Streptococcus host-cells interaction and biofilm formation. Frontiers in Microbiology:5:339.

Young, J; Wang, Q; Fux, C A; Bernasconi, E; Furrer, H; Vernazza, P; Calmy, A; Cavassini, M; Weber, R; Battegay, M; Bucher, H C (2014). The rate of recovery in renal function when patients with HIV infection discontinue treatment with tenofovir. HIV Medicine, 15(8):505-510.

Moradpour, Darius; Rauch, Andri; Fehr, Jan; Müllhaupt, Beat (2014). Treatment of Chronic Hepatitis C - September 2014 Update. SASL/SSI Guidelines 1, University of Zurich.

Drescher, Sara M; von Wyl, Viktor; Yang, Wan-Lin; Böni, Jürg; Yerly, Sabine; Shah, Cyril; Aubert, Vincent; Klimkait, Thomas; Taffé, Patrick; Furrer, Hansjakob; Battegay, Manuel; Ambrosioni, Juan; Cavassini, Matthias; Bernasconi, Enos; Vernazza, Pietro L; Ledergerber, Bruno; Günthard, Huldrych F; Kouyos, Roger D (2014). Treatment-Naive Individuals Are the Major Source of Transmitted HIV-1 Drug Resistance in Men Who Have Sex With Men in the Swiss HIV Cohort Study. Clinical Infectious Diseases, 58(2):285-294.

Smith, Colette J; Ryom, Lene; Weber, Rainer; Morlat, Philippe; Pradier, Christian; Reiss, Peter; Kowalska, Justyna D; de Wit, Stephane; Law, Matthew; El-Sadr, Wafaa; Kirk, Ole; Friis-Moller, Nina; Monforte, Antonella d'Arminio; Phillips, Andrew N; Sabin, Caroline A; Lundgren, Jens D (2014). Trends in underlying causes of death in people with HIV from 1999 to 2011 (D:A:D): a multicohort collaboration. Lancet, 384(9939):241-248.

Seidl, Kati; Leimer, Nadja; Palheiros Marques, Miguel; Furrer, Alexandra; Senn, Gabriela; Holzmann-Bürgel, Anne; Matt, Ulrich; Zinkernagel, Annelies S (2014). USA300 methicillin-resistant Staphylococcus aureus in Zurich, Switzerland between 2001 and 2013. International Journal of Medical Microbiology : IJMM, 304(8):1118-1122.

Leventhal, Gabriel E; Günthard, Huldrych F; Bonhoeffer, Sebastian; Stadler, Tanja (2014). Using an epidemiological model for phylogenetic inference reveals density dependence in HIV transmission. Molecular Biology and Evolution, 31(1):6-17.

Schreiber, Peter; Fauchère, Ivan; Wyss, Christophe (2014). Verwendung von ADP-Rezeptorantagonisten bei KHK und ACS. Praxis, 103(18):1049-1058.

Ender, Miriam; Andreoni, Federica; Zinkernagel, Annelies Sophie; Schuepbach, Reto Andreas (2013). Streptococcal SpeB cleaved PAR-1 suppresses ERK phosphorylation and blunts thrombin-induced platelet aggregation. PLoS ONE, 8(11):e81298.

Nobile, Aleksandra; Schüpbach, Reto A; Flepp, Markus; Maggiorini, Marco; Günthard, Huldrych; Zinkernagel, Annelies S (2013). Heiserkeit nach USA-Reise. Praxis, 102(22):1377-1381.

Schüpbach, J; Gebhardt, M D; Scherrer, A U; Bisset, L R; Niederhauser, C; Regenass, S; Yerly, S; Aubert, V; Suter, F; Pfister, S; Martinetti, G; Andreutti, C; Klimkait, T; Brandenberger, M; Gunthard, H F (2013). Simple estimation of incident HIV infection rates in notification cohorts based on window periods of algorithms for evaluation of line-immunoassay result patterns. PLoS ONE, 8(8):e71662.

Nüesch, Reto; Wang, Qing; Elzi, Luigia; Bernasconi, Enos; Weber, Rainer; Cavassini, Matthias; Vernazza, Pietro; Thurnheer, Maria C; Calmy, Alexandra; Battegay, Manuel; Bucher, Heiner C (2013). Risk of cardiovascular events and blood pressure control in hypertensive HIV-infected patients: Swiss HIV Cohort Study (SHCS). Journal of Acquired Immune Deficiency Syndromes, 62(4):396-404.

Mohammadi, Pejman; Desfarges, Sébastien; Bartha, István; Joos, Beda; Zangger, Nadine; Muñoz, Miguel; Günthard, Huldrych F; Beerenwinkel, Niko; Telenti, Amalio; Ciuffi, Angela (2013). 24 hours in the life of HIV-1 in a T cell line. PLoS Pathogens, 9(1):e1003161.

Bartha, István; Carlson, Jonathan M; Brumme, Chanson J; McLaren, Paul J; Brumme, Zabrina L; John, Mina; Haas, David W; Martinez-Picado, Javier; Dalmau, Judith; López-Galíndez, Cecilio; Casado, Concepción; Rauch, Andri; Günthard, Huldrych F; Bernasconi, Enos; Vernazza, Pietro; Klimkait, Thomas; Yerly, Sabine; O'Brien, Stephen J; Listgarten, Jennifer; Pfeifer, Nico; Lippert, Christoph; Fusi, Nicolo; Kutalik, Zoltán; Allen, Todd M; Müller, Viktor; Harrigan, P Richard; Heckerman, David; Telenti, Amalio; Fellay, Jacques (2013). A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control. eLife, 2013(2):e01123.

Maurer, F P; Maggio, E M; Roth, T N; Kuster, S P; Bloemberg, G V (2013). A well-preserved culprit. Clinical Infectious Diseases, 56(5):747-748.

von Wyl, Viktor; Klimkait, Thomas; Yerly, Sabine; Nicca, Dunja; Furrer, Hansjakob; Cavassini, Matthias; Calmy, Alexandra; Bernasconi, Enos; Böni, Jürg; Aubert, Vincent; Günthard, Huldrych F; Bucher, Heiner C; Glass, Tracy R (2013). Adherence as a predictor of the development of class-specific resistance mutations: the Swiss HIV Cohort Study. PLoS ONE, 8(10):e77691.

Tarr, P E; Baumann, K; Wallnöfer, A; Zimmerli, F; Maritz, D; Burri, U; Egger, M; Clerc, O; Bernasconi, E; Kovari, H; Senn, L (2013). Akute Harnwegsinfektionen : Teil 1: HWI in der Praxis. Swiss Medical Forum, 13(24):467-471.

Tarr, P; Baumann, K; Wallnöfer, A; Zimmerli, F; Maritz, D; Burri, U; Egger, M; Clerc, O; Bernasconi, E; Kovari, H; Senn, L (2013). Akute Harnwegsinfektionen : Teil 2 : HWI im Spital und Alters- und Pflegeheim. Swiss Medical Forum, 13(24):472-475.

Kovari, Helen; Sabin, Caroline A; Ledergerber, Bruno; Ryom, Lene; Worm, Signe W; Smith, Colette; Phillips, Andrew; Reiss, Peter; Fontas, Eric; Petoumenos, Kathy; De Wit, Stéphane; Morlat, Philippe; Lundgren, Jens D; Weber, Rainer (2013). Antiretroviral drug-related liver mortality among HIV-positive persons in the absence of HBV or HCV co-infection. The Data Collection on Adverse Events of Anti-HIV Drugs (D:A:D) Study. Clinical Infectious Diseases, 56(6):870-879.

Fehr, J; Nicca, D; Langewitz, W; Haerry, D; Battegay, M (2013). Assessing HIV-positive persons' readiness to start and maintain ART. In: European AIDS Clinical Society. Guidelines of the European AIDS Clinical Society. Paris/France: European AIDS Clinical Society, 6.

Sabin, Caroline A; Ryom, Lene; Kovari, Helen; Kirk, Ole; de Wit, Stephane; Law, Matthew; Reiss, Peter; Dabis, Francois; Pradier, Christian; El-Sadr, Wafaa; Monforte, Antonella d'Arminio; Kamara, David; Phillips, Andrew N; Lundgren, Jens D (2013). Association between ALT level and the rate of cardio/cerebrovascular events in HIV-positive individuals: the D: A: D study. Journal of Acquired Immune Deficiency Syndromes, 63(4):456-463.

Conen, Anna; Wang, Qing; Glass, Tracy R; Fux, Christoph A; Thurnheer, Maria Christine; Orasch, Christina; Calmy, Alexandra; Bernasconi, Enos; Vernazza, Pietro; Weber, Rainer; Bucher, Heiner C; Battegay, Manuel; Fehr, Jan (2013). Association of alcohol consumption and HIV surrogate markers in participants of the Swiss HIV Cohort Study. Journal of Acquired Immune Deficiency Syndromes, 64(5):472-478.

Sabin, Caroline A; Ryom, Lene; De Wit, Stephane; Mocroft, Amanda; Phillips, Andrew N; Worm, Signe W; Weber, Rainer; D'Arminio Monforte, Antonella; Reiss, Peter; Kamara, David; El-Sadr, Wafaa; Pradier, Christian; Dabis, Francois; Law, Matthew; Lundgren, Jens (2013). Associations between immune depression and cardiovascular events in HIV infection. AIDS, 27(17):2735-2748.

Monforte, Antonella d'Arminio; Reiss, Peter; Ryom, Lene; El-Sadr, Wafaa; Dabis, Francois; De Wit, Stephane; Worm, Signe W; Law, Mathew G; Weber, Rainer; Kirk, Ole; Pradier, Christian; Phillips, Andrew N; Lundgren, Jens D; Sabin, Caroline A (2013). Atazanavir is not associated with an increased risk of cardio- or cerebrovascular disease events. AIDS, 27(3):407-415.

González, Raquel; Maldonado, Antonio; Martín, Virginia; Mandomando, Inácio; Fumadó, Victoria; Metzner, Karin J; Sacoor, Charfudin; Fernández, Leónides; Macete, Eusébio; Alonso, Pedro L; Rodríguez, Juan M; Menendez, Clara (2013). Breast milk and gut microbiota in African mothers and infants from an area of high HIV prevalence. PLoS ONE, 8(11):e80299.

Millard, Anne-Laure; Valli, Piero V; Stussi, Georg; Mueller, Nicolas J; Yung, Gisella Puga; Seebach, Jörg D (2013). Brief exercise increases peripheral blood NK cell counts without immediate functional changes, but impairs their responses to ex vivo stimulation. Frontiers in Immunology:4:125.

Mocroft, Amanda; Phillips, Andrew N; Gatell, Jose; Horban, Andrej; Ledergerber, Bruno; Zilmer, Kai; Jevtovic, Djordje; Maltez, Fernando; Podlekareva, Daria; Lundgren, Jens D (2013). CD4 cell count and viral load-specific rates of AIDS, non-AIDS and deaths according to current antiretroviral use. AIDS, 27(6):907-918.

Wolfensberger, Aline; Sax, Hugo; Weber, Rainer; Zbinden, Reinhard; Kuster, Stefan P; Hombach, Michael (2013). Change of antibiotic susceptibility testing guidelines from CLSI to EUCAST: Influence on cumulative hospital antibiograms. PLoS ONE, 8(11):e79130.

Rohrbach, Janine; Stickel, Felix; Schmid, Patrick; Thormann, Wolfgang; Kovari, Helen; Scherrer, Alexandra; Günthard, Huldrych F; Vuichard, Danielle; Cavassini, Matthias; Ambrosioni, Juan; Bernasconi, Enos; Furrer, Hansjakob; Rauch, Andri (2013). Changes in biomarkers of liver disease during successful combination antiretroviral therapy in HIV/HCV-coinfected individuals. Antiviral Therapy, 19(2):149-159.

Achermann, Y; Sahin, F; Schwyzer, H K; Kolling, C; Wüst, J; Vogt, M (2013). Characteristics and outcome of 16 periprosthetic shoulder joint infections. Infection, 41(3):613-620.

Maurer, Florian P; Keller, Peter M; Beuret, Christian; Joha, Cornelia; Achermann, Yvonne; Gubler, Jaques; Bircher, Daniela; Karrer, Urs; Fehr, Jan; Zimmerli, Lukas; Bloemberg, Guido V (2013). Close geographic association of human neoehrlichiosis and tick populations carrying Candidatus Neoehrlichia mikurensis in Eastern Switzerland. Journal of clinical microbiology, 51(1):169-176.

Taylor, Ninon; Grabmeier-Pfistershammer, Katharina; Egle, Alexander; Greil, Richard; Rieger, Armin; Ledergerber, Bruno; Oberkofler, Hannes (2013). Cobas Ampliprep/Cobas TaqMan HIV-1 v2.0 Assay: Consequences at the Cohort Level. PLoS ONE, 8(8):e74024.

Gallant, Joel E; Koenig, Ellen; Andrade-Villanueva, Jaime; Chetchotisakd, Ploenchan; DeJesus, Edwin; Antunes, Francisco; Arastéh, Keikawus; Moyle, Graeme; Rizzardini, Giuliano; Fehr, Jan; Liu, Yapei; Zhong, Lijie; Callebaut, Christian; Szwarcberg, Javier; Rhee, Martin S; Cheng, Andrew K (2013). Cobicistat versus ritonavir as a pharmacoenhancer of atazanavir plus emtricitabine/tenofovir disoproxil fumarate in treatment-naive HIV type 1-infected patients: week 48 results. Journal of Infectious Diseases, 208(1):32-39.

Uchiyama, Satoshi; Andreoni, Federica; Zürcher, Claudia; Schilcher, Katrin; Ender, Miriam; Madon, Jerzy; Matt, Ulrich; Ghosh, Partho; Nizet, Victor; Schuepbach, Reto A; Zinkernagel, Annelies S (2013). Coiled-coil irregularities of the M1 protein structure promote M1-fibrinogen interaction and influence group A Streptococcus host cell interactions and virulence. Journal of Molecular Medicine, 91(7):861-869.

Rotger, Margalida; Glass, Tracy R; Junier, Thomas; Lundgren, Jens; Neaton, James D; Poloni, Estella S; van 't Wout, Angélique B; Lubomirov, Rubin; Colombo, Sara; Martinez, Raquel; Rauch, Andri; Günthard, Huldrych F; Neuhaus, Jacqueline; Wentworth, Deborah; van Manen, Danielle; Gras, Luuk A; Schuitemaker, Hanneke; Albini, Laura; Torti, Carlo; Jacobson, Lisa P; Li, Xiuhong; Kingsley, Lawrence A; Carli, Federica; Guaraldi, Giovanni; Ford, Emily S; Sereti, Irini; Hadigan, Colleen; Martinez, Esteban; Arnedo, Mireia; Egaña-Gorroño, Lander; Gatell, Jose M; Law, Matthew; Bendall, Courtney; Petoumenos, Kathy; Rockstroh, Jürgen; Wasmuth, Jan-Christian; Kabamba, Kabeya; Delforge, Marc; De Wit, Stephane; Berger, Florian; Mauss, Stefan; de Paz Sierra, Mariana; Losso, Marcelo; Belloso, Waldo H; Leyes, Maria; Campins, Antoni; Mondi, Annalisa; De Luca, Andrea; Bernardino, Ignacio; Barriuso-Iglesias, Mónica; Torrecilla-Rodriguez, Ana; Gonzalez-Garcia, Juan; Arribas, José R; Fanti, Iuri; Gel, Silvia; Puig, Jordi; Negredo, Eugenia; Gutierrez, Mar; Domingo, Pere; Fischer, Julia; Fätkenheuer, Gerd; Alonso-Villaverde, Carlos; Macken, Alan; Woo, James; McGinty, Tara; Mallon, Patrick; Mangili, Alexandra; Skinner, Sally; Wanke, Christine A; Reiss, Peter; Weber, Rainer; Bucher, Heiner C; Fellay, Jacques; Telenti, Amalio; Tarr, Philip E (2013). Contribution of genetic background, traditional risk factors, and HIV-related factors to coronary artery disease events in HIV-positive persons. Clinical Infectious Diseases, 57(1):112-121.

Kovari, Helen; de Melo Oliveira, Maria Dg; Hauser, Paula; Läuchli, Severin; Meyer, Jürg; Weber, Rainer; Zbinden, Reinhard (2013). Decreased susceptibility of Neisseria gonorrhoeae isolates from Switzerland to Cefixime and Ceftriaxone: antimicrobial susceptibility data from 1990 and 2000 to 2012. BMC Infectious Diseases, 13:603.

Weber, R; Ruppik, M; Rickenbach, M; Spoerri, A; Furrer, H; Battegay, M; Cavassini, M; Calmy, A; Bernasconi, E; Schmid, P; Flepp, M; Kowalska, J; Ledergerber, B; Schmid, P; Schultze, D; Schöni-Affolter, F; Schüpbach, J; Speck, R; Taffé, P; Tarr, P; Telenti, A; Trkola, A; Vernazza, P; Weber, R; Yerly, S (2013). Decreasing mortality and changing patterns of causes of death in the Swiss HIV Cohort Study. HIV Medicine, 14(4):195-207.

Koller, Michael T; van Delden, Christian; Müller, Nicolas J; Baumann, Philippe; Lovis, Christian; Marti, Hans-Peter; Fehr, Thomas; Binet, Isabelle; De Geest, Sabina; Bucher, Heiner C; Meylan, Pascal; Pascual, Manuel; Steiger, Jürg (2013). Design and methodology of the Swiss Transplant Cohort Study (STCS): a comprehensive prospective nationwide long-term follow-up cohort. European Journal of Epidemiology, 28(4):347-355.

Vratskikh, Oksana; Stiasny, Karin; Zlatkovic, Jürgen; Tsouchnikas, Georgios; Jarmer, Johanna; Karrer, Urs; Roggendorf, Michael; Roggendorf, Hedwig; Allwinn, Regina; Heinz, Franz X (2013). Dissection of antibody specificities induced by yellow fever vaccination. PLoS Pathogens, 9(6):e1003458.

Tchang, Vincent Sam Yong; Mekker, Andrea; Siegmund, Kerstin; Karrer, Urs; Pieters, Jean (2013). Diverging role for coronin 1 in antiviral CD4(+) and CD8(+) T cell responses. Molecular Immunology, 56(4):683-692.

Cosgrove, Cormac; Ussher, James E; Rauch, Andri; Gärtner, Kathleen; Kurioka, Ayako; Hühn, Michael H; Adelmann, Krista; Kang, Yu-Hoi; Fergusson, Joannah R; Simmonds, Peter; Goulder, Philip; Hansen, Ted H; Fox, Julie; Günthard, Huldrych F; Khanna, Nina; Powrie, Fiona; Steel, Alan; Gazzard, Brian; Phillips, Rodney E; Frater, John; Uhlig, Holm; Klenerman, Paul (2013). Early and nonreversible decrease of CD161++ /MAIT cells in HIV infection. Blood, 121(6):951-961.

Bernasconi, Michele; Ueda, Seigo; Krukowski, Patricia; Bornhauser, Beat C; Ladell, Kristin; Dorner, Marcus; Sigrist, Juerg A; Campidelli, Cristina; Aslandogmus, Roberta; Alessi, Davide; Berger, Christoph; Pileri, Stefano A; Speck, Roberto F; Nadal, David (2013). Early gene expression changes by Epstein-Barr virus infection of B-cells indicate CDKs and survivin as therapeutic targets for post-transplant lymphoproliferative diseases. International Journal of Cancer, 133(10):2341-2350.

Anagnostopoulos, Alexia; Rotger, Margalida; Aouri, Manel; Kuster, Stefan P; Telenti, Amalio; Décosterd, Laurent A; Günthard, Huldrych F (2013). Efavirenz intoxication due to a new CYP2B6 constellation. Antiviral Therapy, 18(5):735-738.

Brennan, Daniel C; Aguado, José M; Potena, Luciano; Jardine, Alan G; Legendre, Christophe; Säemann, Marcus D; Mueller, Nicolas J; Merville, Pierre; Emery, Vincent; Nashan, Björn (2013). Effect of maintenance immunosuppressive drugs on virus pathobiology: evidence and potential mechanisms. Reviews in Medical Virology, 23(2):97-125.

Kuster, S P. Epidemiology of Influenza and Influenza-related Infections in the community and the Healthcare Setting. 2013, University of Zurich, Faculty of Medicine.

Gasser, O; Brander, C; Wolbers, M; Brown, N; Rauch, A; Günthard, H; Battegay, M; Hess, C (2013). Expansion of interferon-γ-secreting HIV-specific T cells during successful antiretroviral therapy. HIV Medicine, 14(4):241-246.

Preiswerk, B; Rudiger, A; Fehr, J; Corti, N (2013). Experience with daptomycin daily dosing in ICU patients undergoing continuous renal replacement therapy. Infection, 41(2):553-557.

Achermann, Y; Eigenmann, K; Ledergerber, B; Derksen, L; Rafeiner, P; Clauss, M; Nüesch, R; Zellweger, C; Vogt, M; Zimmerli, W (2013). Factors associated with rifampin resistance in staphylococcal periprosthetic joint infections (PJI): a matched case–control study. Infection, 41(2):431-437.

Sommerstein, R; Ramsay, D; Dubuis, O; Waser, S; Aebersold, F; Vogt, M (2013). Fatal Neisseria sicca endocarditis. Infection, 41(3):747-749.

Fayet-Mello, Aurélie; Buclin, Thierry; Guignard, Nicole; Cruchon, Sandra; Cavassini, Matthias; Grawe, Claudia; Gremlich, Erika; Popp, Karoline Aebi; Schmid, Flavia; Eap, Chin B; Telenti, Amalio; Biollaz, Jérôme; Decosterd, Laurent A; Martinez de Tejada, Begoña (2013). Free and total plasma levels of lopinavir during pregnancy, at delivery and postpartum: implications for dosage adjustments in pregnant women. Antiviral Therapy, 18(2):171-182.

Fenner, Lukas; Egger, Matthias; Bodmer, Thomas; Furrer, Hansjakob; Ballif, Marie; Battegay, Manuel; Helbling, Peter; Fehr, Jan; Gsponer, Thomas; Rieder, Hans L; Zwahlen, Marcel; Hoffmann, Matthias; Bernasconi, Enos; Cavassini, Matthias; Calmy, Alexandra; Dolina, Marisa; Frei, Reno; Janssens, Jean-Paul; Borrell, Sonia; Stucki, David; Schrenzel, Jacques; Böttger, Erik C; Gagneux, Sebastien (2013). HIV infection disrupts the sympatric host-pathogen relationship in human tuberculosis. PLoS Genetics, 9(3):e1003318.

von Braun, Amrei; Günthard, Huldrych (2013). HIV-Infektion und antiretrovirale Therapie: Grundsätze der Behandlung und Einflüsse auf andere Therapien. Praxis, 102(1):5-13; quiz 14.

Allegranzi, B; Sax, H; Pittet, D (2013). Hand hygiene and healthcare system change within multi-modal promotion: a narrative review. Journal of Hospital Infection, 83(S1):S3-S10.

Wandeler, Gilles; Gsponer, Thomas; Bihl, Florian; Bernasconi, Enos; Cavassini, Matthias; Kovari, Helen; Schmid, Patrick; Battegay, Manuel; Calmy, Alexandra; Egger, Matthias; Furrer, Hansjakob; Rauch, Andri (2013). Hepatitis B virus infection is associated with impaired immunological recovery during antiretroviral therapy in the Swiss HIV Cohort Study. Journal of Infectious Diseases, 208(9):1454-1458.

Uçkay, Ilker; Sax, Hugo; Gayet-Ageron, Angèle; Ruef, Christian; Mühlemann, Kathrin; Troillet, Nicolas; Petignat, Christiane; Bernasconi, Enos; Balmelli, Carlo; Widmer, Andreas; Boubaker, Karim; Pittet, Didier (2013). High proportion of healthcare-associated urinary tract infection in the absence of prior exposure to urinary catheter: a cross-sectional study. Antimicrobial Resistance and Infection Control , 2:5.

Cusini, A; Vernazza, P L; Yerly, S; Decosterd, L A; Ledergerber, B; Fux, C A; Rohrbach, J; Widmer, N; Hirschel, B; Gaudenz, R; Cavassini, M; Klimkait, Th; Zenger, F; Gutmann, C; Opravil, M; Günthard, H F (2013). Higher CNS Penetration-Effectiveness of long-term combination antiretroviral therapy is associated with better HIV-1 viral suppression in cerebrospinal fluid. Journal of Acquired Immune Deficiency Syndromes, 62(1):28-35.

Kouyos, Roger; Klein, Eili; Grenfell, Bryan (2013). Hospital-community interactions foster coexistence between methicillin-resistant strains of Staphylococcus aureus. PLoS Pathogens, 9(2):e1003134.

Shirreff, George; Alizon, Samuel; Cori, Anne; Gunthard, Huldrych F; Laeyendecker, Oliver; van Sighem, Ard; Bezemer, Daniela; Fraser, Christophe (2013). How effectively can HIV phylogenies be used to measure heritability? Evolution, Medicine, and Public Health, 2013(1):209-224.

Wolfensberger, A; Benz, R; Russi, E W; Tinguely, M; Keller, C; Gerber, B (2013). Husten, Atemnot und B-Symptome bei einer 40-jährigen Frau. Der Internist, 54(8):1011-1015.

Smith, Miranda Z; Bastidas, Sonia; Karrer, Urs; Oxenius, Annette (2013). Impact of antigen specificity on CD4+ T cell activation in chronic HIV-1 infection. BMC Infectious Diseases, 13:100.

Manuel, O; Kralidis, G; Mueller, N J; Hirsch, H H; Garzoni, C; van Delden, C; Berger, C; Boggian, K; Cusini, A; Koller, M T; Weisser, M; Pascual, M; Meylan, P R (2013). Impact of antiviral preventive strategies on the incidence and outcomes of cytomegalovirus disease in solid organ transplant recipients. American Journal of Transplantation, 13(9):2402-2410.

Li, Jonathan Z; Paredes, Roger; Ribaudo, Heather J; Kozal, Michael J; Svarovskaia, Evguenia S; Johnson, Jeffrey A; Geretti, Anna Maria; Metzner, Karin J; Jakobsen, Martin R; Hullsiek, Katherine Huppler; Ostergaard, Lars; Miller, Michael D; Kuritzkes, Daniel R (2013). Impact of minority nonnucleoside reverse transcriptase inhibitor resistance mutations on resistance genotype after virologic failure. Journal of Infectious Diseases, 207(6):893-897.

Boillat-Blanco, Noémie; Darling, Katharine E A; Taffe, Patrick; Osih, Regina; Strahm, Carol; Adami, Maddalena; Elzi, Luigia; Daou, Samira; Fehr, Jan; Wandeler, Gilles; Cavassini, Matthias (2013). Impact of recommendation updates in well-controlled patients on non-recommended antiretroviral therapies: the Swiss HIV Cohort Study. Journal of Acquired Immune Deficiency Syndromes, 62(2):180-189.

Sax, Hugo; Clack, Lauren; Touveneau, Sylvie; Jantarada, Fabricio da Liberdade; Pittet, Didier; Zingg, Walter (2013). Implementation of infection control best practice in intensive care units throughout Europe: a mixed-method evaluation study. Implementation Science, 8:24.

Hombach, Michael; Wolfensberger, Aline; Kuster, Stefan P; Böttger, Erik C (2013). Influence of clinical breakpoint changes from CLSI 2009 to EUCAST 2011 antimicrobial susceptibility testing guidelines on multidrug resistance rates of Gram-negative rods. Journal of Clinical Microbiology, 51(7):2385-2587.

Du Pasquier, Renaud A; Jilek, Samantha; Kalubi, Malela; Yerly, Sabine; Fux, Christoph A; Gutmann, Christine; Cusini, Alexia; Günthard, Huldrych F; Cavassini, Matthias; Vernazza, Pietro L (2013). Marked Increase of the Astrocytic Marker S100B in the Cerebrospinal Fluid of HIV-infected Patients on LPV/r-Monotherapy. AIDS (London, England), 27(2):203-210.

Aebi-Popp, Karoline; Mulcahy, Fiona; Glass, Tracy R; Rudin, Christoph; Martinez de Tejada, Begona; Bertisch, Barbara; Fehr, Jan; Grawe, Claudia; Scheibner, Kathrin; Rickenbach, Martin; Hoesli, Irene; Thorne, Claire (2013). Missed opportunities among HIV-positive women to control viral replication during pregnancy and to have a vaginal delivery. Journal of Acquired Immune Deficiency Syndromes, 64(1):58-65.

Di Giallonardo, Francesca; Zagordi, Osvaldo; Duport, Yannick; Leemann, Christine; Joos, Beda; Künzli-Gontarczyk, Marzanna; Bruggmann, Rémy; Beerenwinkel, Niko; Günthard, Huldrych F; Metzner, Karin J (2013). Next-Generation Sequencing of HIV-1 RNA Genomes: Determination of Error Rates and Minimizing Artificial Recombination. PLoS ONE, 8(9):e74249.

Metzner, Karin J; Scherrer, Alexandra U; Preiswerk, Benjamin; Joos, Beda; von Wyl, Viktor; Leemann, Christine; Rieder, Philip; Braun, Dominique; Grube, Christina; Kuster, Herbert; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Furrer, Hansjakob; Battegay, Manuel; Vernazza, Pietro L; Cavassini, Matthias; Calmy, Alexandra; Bernasconi, Enos; Weber, Rainer; Günthard, Huldrych F (2013). Origin of minority drug-resistant HIV-1 variants in primary HIV-1 infection. Journal of Infectious Diseases, 208(7):1102-1112.

Lubomirov, Rubin; Arab-Alameddine, Mona; Rotger, Margalida; Fayet-Mello, Aurélie; Martinez, Raquel; Guidi, Monia; di Iulio, Julia; Cavassini, Matthias; Günthard, Huldrych F; Furrer, Hansjakob; Marzolini, Catia; Bernasconi, Enos; Calmy, Alexandra; Buclin, Thierry; Decosterd, Laurent A; Csajka, Chantal; Telenti, Amalio (2013). Pharmacogenetics-based population pharmacokinetic analysis of etravirine in HIV-1 infected individuals. Pharmacogenetics and Genomics, 23(1):9-18.

Mertz, Dominik; Kim, Tae Hyong; Johnstone, Jennie; Lam, Po-Po; Science, Michelle; Kuster, Stefan P; Fadel, Shaza A; Tran, Dat; Fernandez, Eduardo; Bhatnagar, Neera; Loeb, Mark (2013). Populations at risk for severe or complicated influenza illness: systematic review and meta-analysis. British Medical Journal, 347:f5061.

Bostanci, Nagihan; Thurnheer, Thomas; Aduse-Opoku, Joseph; Curtis, Michael A; Zinkernagel, Annelies S; Belibasakis, Georgios N (2013). Porphyromonas gingivalis regulates TREM-1 in human polymorphonuclear neutrophils via its gingipains. PLoS ONE, 8(10):e75784.

Ledergerber, B; Costagliola, D; Lodwick, R; Torti, C; van Sighem, A; Podzamczer, D; Mocroft, A; Dorrucci, M; Masquelier, B; Günthard, H F; de Luca, A; Michalik, C (2013). Predictors of CD4+ T-Cell Counts of HIV Type 1-Infected Persons After Virologic Failure of All 3 Original Antiretroviral Drug Classes. Journal of Infectious Diseases, 207(5):759-767.

Achermann, Yvonne; Rössle, Matthias; Hoffmann, Matthias; Deggim, Vanessa; Kuster, Stefan; Zimmermann, Dieter R; Bloemberg, Guido; Hombach, Michael; Hasse, Barbara (2013). Prosthetic valve endocarditis and bloodstream infection due to Mycobacterium chimaera. Journal of Clinical Microbiology, 51(6):1769-1773.

Braun, Dominique Laurent; Hasse, Barbara Katharina; Stricker, Julia; Fehr, Jan Sven (2013). Prosthetic valve endocarditis caused by Propionibacterium species successfully treated with coadministered rifampin: report of two cases. BMJ Case Reports, 2013:pii: bcr2012007204.

Abdelhady, Wessam; Bayer, Arnold S; Seidl, Kati; Nast, Cynthia C; Kiedrowski, Megan R; Horswill, Alexander R; Yeaman, Michael R; Xiong, Yan Q (2013). Reduced vancomycin susceptibility in an in vitro catheter-related biofilm model correlates with poor therapeutic outcomes in experimental endocarditis due to methicillin-resistant Staphylococcus aureus. Antimicrobial Agents and Chemotherapy, 57(3):1447-1454.

Sassi, Monica; Mueller, Nicolas J; Yazaki, Hirohisa; Oka, Shinichi; Gianella, Sara; Kovacs, Joseph A (2013). Reply to Hauser et al. Clinical Infectious Diseases, 56(1):166-167.

Bosshard, Philipp P; Graf, Nicole; Knaute, Damaris Fröhlich; Kündig, Thomas; Lautenschlager, Stephan; Weber, Rainer (2013). Response of treponema pallidum particle agglutination test titers to treatment of syphilis. Clinical Infectious Diseases, 56(3):463-464.

Cusini, Alexia; Ledergerber, Bruno; Widmer, Nicolas; Günthard, Huldrych F (2013). Response to Calcagno comment on "Higher CNS penetration-effectiveness of long-term combination antiretroviral therapy is associated with better HIV-1 viral suppression in cerebrospinal fluid". Journal of Acquired Immune Deficiency Syndromes, 64(2):e14-e15.

Bertisch, Barbara; Franceschi, Silvia; Lise, Mauro; Vernazza, Pietro; Keiser, Olivia; Schöni-Affolter, Franziska; Bouchardy, Christine; Dehler, Silvia; Levi, Fabio; Jundt, Gernot; Ess, Silvia; Pawlita, Michael; Kovari, Helen; Wandeler, Gilles; Calmy, Alexandra; Cavassini, Matthias; Stöckle, Marcel; Clifford, Gary (2013). Risk factors for anal cancer in persons infected With HIV: A nested case-control study in the Swiss HIV Cohort Study. American Journal of Epidemiology, 178(6):877-884.

Kuster, Stefan P; Coleman, Brenda L; Raboud, Janet; McNeil, Shelly; De Serres, Gaston; Gubbay, Jonathan; Hatchette, Todd; Katz, Kevin C; Loeb, Mark; Low, Donald; Mazzulli, Tony; Simor, Andrew; McGeer, Allison J (2013). Risk factors for influenza among health care workers during 2009 pandemic, Toronto, Ontario, Canada. Emerging Infectious Diseases, 19(4):606-615.

Quiblier, Chantal; Seidl, Kati; Roschitzki, Bernd; Zinkernagel, Annelies S; Berger-Bächi, Brigitte; Senn, Maria M (2013). Secretome analysis defines the major role of SecDF in Staphylococcus aureus virulence. PLoS ONE, 8(5):e63513.

Weibel, Pascal; Ender, Miriam; Madon, Jerzy; Zinkernagel, Annelies; Schuepbach, Reto (2013). Selection vector for direct cloning of proof reading polymerase chain reaction products based on the lethal ccdB gene in Escherichia Coli. Advances in Microbiology, 3(1):14-20.

Grint, D; Peters, L; Reekie, J; Soriano, V; Kirk, O; Knysz, B; Suetnov, O; Lazzarin, A; Ledergerber, B; Rockstroh, J K; Mocroft, A (2013). Stability of hepatitis C virus (HCV) RNA levels among interferon-naïve HIV/HCV-coinfected individuals treated with combination antiretroviral therapy. HIV Medicine, 14(6):370-378.

Weber, R; Fontana, A (2013). Status febrilis. In: Battegay, E. Siegenthalers Differenzialdiagnose: innere Krankheiten - vom Symptom zur Diagnose. Stuttgart: Georg Thieme Verlag, 111-216.

Veloso, Tiago Rafael; Zbinden, Andrea; Andreoni, Federica; Giddey, Marlyse; Vouillamoz, Jacques; Moreillon, Philippe; Zinkernagel, Annelies Sophie; Entenza, José Manuel (2013). Streptococcus tigurinus is highly virulent in a rat model of experimental endocarditis. International Journal of Medical Microbiology : IJMM, 303(8):498-504.

Seidl, Kati; Zinkernagel, Annelies S (2013). The MTT assay is a rapid and reliable quantitative method to assess Staphylococcus aureus induced endothelial cell damage. Journal of Microbiological Methods, 92(3):307-309.

Mocroft, A; Furrer, H J; Miro, J M; Reiss, P; Mussini, C; Kirk, O; Abgrall, S; Ayayi, S; Bartmeyer, B; Braun, D; Castagna, A; d'Arminio Monforte, A; Gazzard, B; Gutierrez, F; Hurtado, I; Jansen, K; Meyer, L; Muñoz, P; Obel, N; Soler-Palacin, P; Papadopoulos, A; Raffi, F; Ramos, J T; Rockstroh, J K; Salmon, D; Torti, C; Warszawski, J; de Wit, S; Zangerle, R; Fabre-Colin, C; Kjaer, J; Chene, G; Grarup, J; Lundgren, J D (2013). The incidence of AIDS-defining illnesses at a current CD4 count ≥ 200 cells/μL in the post-combination antiretroviral therapy era. Clinical Infectious Diseases, 57(7):1038-1047.

Beerenwinkel, Niko; Montazeri, Hesam; Schuhmacher, Heike; Knupfer, Patrick; von Wyl, Viktor; Furrer, Hansjakob; Battegay, Manuel; Hirschel, Bernard; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Yerly, Sabine; Böni, Jürg; Klimkait, Thomas; Cellerai, Cristina; Günthard, Huldrych F (2013). The individualized genetic barrier predicts treatment response in a large cohort of HIV-1 infected patients. PLoS Computational Biology, 9(8):e1003203.

Wang, Qing; Young, Jim; Bernasconi, Enos; Cavassini, Matthias; Vernazza, Pietro; Hirschel, Bernard; Weber, Rainer; Furrer, Hansjakob; Stoeckle, Marcel; Bucher, Heiner C; Fux, Christoph (2013). The prevalence of erectile dysfunction and its association with antiretroviral therapy in HIV-infected men: the Swiss HIV Cohort Study. Antiviral Therapy, 18(3):337-344.

Tchang, Vincent Sam Yong. The role of coronin 1 during cell mediated immune responses. 2013, University of Zurich, Faculty of Science.

Johnson, Victoria A; Calvez, Vincent; Gunthard, Huldrych F; Paredes, Roger; Pillay, Deenan; Shafer, Robert W; Wensing, Annemarie M; Richman, Douglas D (2013). Update of the drug resistance mutations in HIV-1: March 2013. Topics in Antiviral Medicine, 21(1):6-14.

Hasse, Barbara; Husmann, Lars; Zinkernagel, Annelies; Weber, Rainer; Lachat, Mario; Mayer, Dieter (2013). Vascular graft infections. Swiss Medical Weekly, 143:w13754.

Schüpbach, J; Bisset, L R; Gebhardt, M D; Regenass, S; Bürgisser, P; Gorgievski, M; Klimkait, T; Andreutti, C; Martinetti, G; Niederhauser, C; Yerly, S; Pfister, S; Schultze, D; Brandenberger, M; Schöni-Affolter, F; Scherrer, A U; Gunthard, H F (2012). Diagnostic performance of line-immunoassay based algorithms for incident HIV-1 infection. BMC Infectious Diseases, 12(88):1471-2334.

Glutz von Blotzheim, L; Müller, N J; Huber, L C; Degen, T (2012). 76-jährige Patientin mit tiefer Beinvenenthrombose und zervikaler Lymphadenopathie. Der Internist, 53(6):756-759.

Achermann, Y; Frauenfelder, T; Obrist, S; Zaugg, K; Corti, N; Günthard, H F (2012). A rare but severe pulmonary side effect of cetuximab in two patients. BMJ Case Reports:5 pages.

Greiner, M; Cusini, A; Ruesch, M; Schiesser, M; Ledergerber, B; Fehr, T; Mueller, N J (2012). A stringent preemptive protocol reduces cytomegalovirus disease in the first 6 months after kidney transplantation. Infection, 40(6):669-675.

Nemeth, Johannes; Rumetshofer, Rudolf; Winkler, Heide-Maria; Burghuber, Otto C; Müller, Catharina; Winkler, Stefan (2012). Active tuberculosis is characterized by an antigen specific and strictly localized expansion of effector T cells at the site of infection. European Journal of Immunology, 42(11):2844-2850.

Savaria, F. Antibiotikaresistenzen von E. coli in Urinproben: Prävalenzdaten dreier Laboratorien im Raum Zürich von 1985 bis 2010. 2012, University of Zurich, Faculty of Medicine.

Savaria, F; Zbinden, R; Wüst, J; Burnens, A; Ledergerber, B; Weber, R; Kovari, H (2012). Antibiotikaresistenzen von E.coli in Urinproben: Prävalenzdaten dreier Laboratorien im Raum Zürich von 1985 bis 2010. Praxis, 101(9):573-579.

Thompson, Melanie A; Aberg, Judith A; Hoy, Jennifer F; Telenti, Amalio; Benson, Constance; Cahn, Pedro; Eron, Joseph J; Günthard, Huldrych F; Hammer, Scott M; Reiss, Peter; Richman, Douglas D; Rizzardini, Giuliano; Thomas, David L; Jacobsen, Donna M; Volberding, Paul A (2012). Antiretroviral treatment of adult HIV infection: 2012 recommendations of the International Antiviral Society-USA panel. JAMA : the Journal of the American Medical Association, 308(4):387-402.

Sax, H; Stewardson, A; Allegranzi, B; Boyce, J M; Clack, L; Larson, E L; Pittet, D (2012). Beyond reasonable doubt: evidence for "My 5 moments for hand hygiene". London: British Editorial Society of Bone and Joint Surgery.

Mocroft, A; Phillips, A; Gatell, J; Horban, A; Ledergerber, B; Zilmer, K; Jevtovic, D; Maltez, F; Kirk, O; Lundgren, J (2012). CD4 count and viral load specific rates of AIDS, non-AIDS and deaths according to current antiretroviral use. Journal of the International Aids Society, 15(6):18191.

Nakagawa, Fumiyo; Lodwick, Rebecca; Costagliola, Dominique; van Sighem, Ard; Torti, Carlo; Podzamczer, Daniel; Mocroft, Amanda; Ledergerber, Bruno; Dorrucci, Maria; Cozzi-Lepri, Alessandra; Jansen, Klaus; Masquelier, Bernard; García, Federico; De Wit, Stephane; Stephan, Christoph; Obel, Niels; Fätkenhaeuer, Gerd; Castagna, Antonella; Sambatakou, Helen; Mussini, Cristina; Ghosn, Jade; Zangerle, Robert; Duval, Xavier; Meyer, Laurence; Perez-Hoyos, Santiago; Fabre-Colin, Céline; Kjaer, Jesper; Chene, Genevieve; Grarup, Jesper; Phillips, Andrew (2012). Calendar time trends in the incidence and prevalence of triple-class virologic failure in antiretroviral drug-experienced people with HIV in Europe. Journal of Acquired Immune Deficiency Syndromes, 59(3):294-299.

Longtin, Yves; Farquet, Natacha; Gayet-Ageron, Angèle; Sax, Hugo; Pittet, Didier (2012). Caregivers' Perceptions of Patients as Reminders to Improve Hand Hygiene. Archives of Internal Medicine, 172(19):1516-1517.

Aalen, Odd O; Røysland, Kjetil; Gran, Jon Michael; Ledergerber, Bruno (2012). Causality, mediation and time: a dynamic viewpoint. Journal of the Royal Statistical Society: Series A, 175(4):831-861.

Abela, Irene A; Berlinger, Livia; Schanz, Merle; Reynell, Lucy; Günthard, Huldrych F; Rusert, Peter; Trkola, Alexandra (2012). Cell-cell transmission enables HIV-1 to evade inhibition by potent CD4bs directed antibodies. PLoS Pathogens, 8(4):e1002634.

Beerenwinkel, Niko; Günthard, Huldrych F; Roth, Volker; Metzner, Karin J (2012). Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data. Frontiers in Microbiology, 3:329.

Elzi, Luigia; Erb, Stefan; Furrer, Hansjakob; Ledergerber, Bruno; Cavassini, Matthias; Hirschel, Bernard; Vernazza, Pietro; Bernasconi, Enos; Weber, Rainer; Battegay, Manuel (2012). Choice of initial combination antiretroviral therapy in individuals with hiv infection: determinants and outcomes. Archives of internal medicine, 172(17):1313-1321.

Colombo, Carlo; Senn, Gabriela; Bürgel, Anne; Ruef, Christian (2012). Clearance of an epidemic clone of methicillin-resistant Staphylococcus aureus in a drug-use network: A follow-up study in Switzerland. Scandinavian Journal of Infectious Diseases, 44(9):650-655.

Arenas-Pinto, Alejandro; Weller, Ian; Ekong, Rosemary; Grant, Alison; Karstaedt, Alan; Reiss, Peter; Telisinghe, Lilanganee; Weber, Rainer; Bolhaar, Martine; Bradman, Neil; Ingram, Catherine (2012). Common inherited mitochondrial DNA mutations and nucleoside reverse transcriptase inhibitor-induced severe hyperlactataemia in HIV-infected adults: an exploratory study. Antiviral Therapy, 17(2):275-82.

Uchiyama, Satoshi; Andreoni, Federica; Schuepbach, Reto A; Nizet, Victor; Zinkernagel, Annelies S (2012). DNase Sda1 allows invasive M1T1 Group A Streptococcus to prevent TLR9-dependent recognition. PLoS Pathogens, 8(6):e1002736.

Glass, Tracy R; Rotger, Margalida; Telenti, Amalio; Decosterd, Laurent; Csajka, Chantal; Bucher, Heiner C; Günthard, Huldrych F; Rickenbach, Martin; Nicca, Dunja; Hirschel, Bernard; Bernasconi, Enos; Wandeler, Gilles; Battegay, Manuel; Marzolini, Catia (2012). Determinants of sustained viral suppression in HIV-infected patients with self-reported poor adherence to antiretroviral therapy. PLoS ONE, 7(1):e29186.

Bonetti, N R; Namdar, M; Günthard, H F; Gruner, C; Greutmann, M; Steffel, J; Hürlimann, D; Ruef, C; Tanner, F C; Jenni, R; Biaggi, P (2012). Early versus late initial echocardiographic assessment in infective endocarditis: similar findings and no difference in clinical outcome. Cardiovascular Medicine, 15(11):317-324.

Latshang, Tsogyal D; Nussbaumer-Ochsner, Yvonne; Henn, Rahel M; Ulrich, Silvia; Lo Cascio, Christian M; Ledergerber, Bruno; Kohler, Malcolm; Bloch, Konrad E (2012). Effect of acetazolamide and autoCPAP therapy on breathing disturbances among patients with obstructive sleep apnea syndrome who travel to altitude: a randomized controlled trial. JAMA : the Journal of the American Medical Association, 308(22):2390-2398.

Zürcher, C. Effect of clindamycin and immunoglobulins on Group A Streptococcus virulence factors. 2012, University of Zurich, Faculty of Medicine.

Fenner, Lukas; Egger, Matthias; Bodmer, Thomas; Altpeter, Ekkehardt; Zwahlen, Marcel; Jaton, Katia; Pfyffer, Gaby E; Borrell, Sonia; Dubuis, Olivier; Bruderer, Thomas; Siegrist, Hans H; Furrer, Hansjakob; Calmy, Alexandra; Fehr, Jan; Stalder, Jesica Mazza; Ninet, Béatrice; Böttger, Erik C; Gagneux, Sebastien (2012). Effect of mutation and genetic background on drug resistance in Mycobacterium tuberculosis. Antimicrobial Agents and Chemotherapy, 56(6):3047-3053.

Birrenbach, Tanja; Bertschy, Sonja; Aebersold, Franziska; Mueller, Nicolas J; Achermann, Yvonne; Muehlethaler, Konrad; Zimmerli, Stefan (2012). Emergence of Blastoschizomyces capitatus yeast infections, Central Europe. Emerging Infectious Diseases, 18(1):98-101.

Stadler, T; Kouyos, R; von Wyl, V; Yerly, S; Böni, J; Bürgisser, P; Klimkait, T; Joos, B; Rieder, P; Xie, D; Günthard, H F; Drummond, A J; Bonhoeffer, S (2012). Estimating the Basic Reproductive Number from Viral Sequence Data. Molecular Biology and Evolution, 29(1):347-357.

Worm, S W; Kamara, D A; Reiss, P; Fontas, E; De Wit, S; El-Sadr, W; D'Arminio Monforte, A; Law, M; Phillips, A; Ryom, L; Dabis, F; Weber, R; Sabin, C; Lundgren, J D (2012). Evaluation of HIV protease inhibitor use and the risk of sudden death or nonhemorrhagic stroke. Journal of Infectious Diseases, 205(4):535-539.

Meier, S. Extended-spectrum Beta-lactamase-producing Gram-negative pathogens in community-acquired urinary tract infections: An increasing challenge for antimicrobial therapy. 2012, University of Zurich, Faculty of Medicine.

Zbinden, A; Imhof, A; Wilhelm, M J; Ruschitzka, F; Wild, P; Bloemberg, G V; Mueller, N J (2012). Fatal outcome after heart transplantation caused by Aspergillus lentulus. Transplant Infectious Disease, 14(5):E60-E63.

Zuercher, Emilie; Butticaz, Christophe; Wyniger, Josiane; Martinez, Raquel; Battegay, Manuel; Boffi El Amari, Emmanuelle; Dang, Thanh; Egger, Jean-François; Fehr, Jan; Mueller-Garamvögyi, Esther; Parini, Andrea; Schaefer, Stephan C; Schoeni-Affolter, Franziska; Thurnheer, Christine; Tinguely, Marianne; Telenti, Amalio; Rothenberger, Sylvia (2012). Genetic diversity of EBV-encoded LMP1 in the Swiss HIV Cohort Study and implication for NF-Κb activation. PLoS ONE, 7(2):e32168.

Stern, M; Czaja, K; Rauch, A; Rickenbach, M; Günthard, H F; Battegay, M; Fellay, J; Hirschel, B; Hess, C (2012). HLA-Bw4 identifies a population of HIV-infected patients with an increased capacity to control viral replication after structured treatment interruption. HIV Medicine, 13(10):589-595.

Wandeler, Gilles; Gsponer, Thomas; Bregenzer, Andrea; Günthard, Huldrych F; Clerc, Olivier; Calmy, Alexandra; Stöckle, Marcel; Bernasconi, Enos; Furrer, Hansjakob; Rauch, Andri (2012). Hepatitis C Virus Infections in the Swiss HIV Cohort Study: A Rapidly Evolving Epidemic. Clinical Infectious Diseases, 55(10):1408-1416.

May, Margaret T; Hogg, Robert S; Justice, Amy C; Shepherd, Bryan E; Costagliola, Dominique; Ledergerber, Bruno; Thiébaut, Rodolphe; Gill, M John; Kirk, Ole; van Sighem, Ard; Saag, Michael S; Navarro, Gemma; Sobrino-Vegas, Paz; Lampe, Fiona; Ingle, Suzanne; Guest, Jodie L; Crane, Heidi M; D'Arminio Monforte, Antonella; Vehreschild, Jörg J; Sterne, Jonathan A (2012). Heterogeneity in outcomes of treated HIV-positive patients in Europe and North America: relation with patient and cohort characteristics. International Journal of Epidemiology, 41(6):1807-1820.

Nischang, Marc; Sutmuller, Roger; Gers-Huber, Gustavo; Audigé, Annette; Li, Duo; Rochat, Mary-Aude; Baenziger, Stefan; Hofer, Ursula; Schlaepfer, Erika; Regenass, Stephan; Amssoms, Katie; Stoops, Bart; Van Cauwenberge, Anja; Boden, Daniel; Kraus, Guenter; Speck, Roberto F (2012). Humanized mice recapitulate key features of HIV-1 infection: a novel concept using long-acting anti-retroviral drugs for treating HIV-1. PLoS ONE, 7(6):e38853.

Mekker, Andrea; Tchang, Vincent S; Haeberli, Lea; Oxenius, Annette; Trkola, Alexandra; Karrer, Urs (2012). Immune senescence: relative contributions of age and cytomegalovirus infection. PLoS Pathogens, 8(8):e1002850.

Coleman, B L; Kuster, S P; Gubbay, J; Scheifele, D; Li, Y; Low, D; Crowcroft, N; Mazzulli, T; Shi, L; Halperin, S A; Law, B; McGeer, A (2012). Immunogenicity of a half-dose of adjuvanted 2009 pandemic H1N1 influenza vaccine in adults: a prospective cohort study. European Journal of Clinical Microbiology and Infectious Diseases, 31(4):591-597.

Zinkernagel, A S; Hruz, P; Uchiyama, S; von Köckritz-Blickwede, M; Schuepbach, R A; Hayashi, T; Carson, D A; Nizet, V (2012). Importance of toll-like receptor 9 in host defense against M1T1 Group A Streptococcus infections. Journal of Innate Immunity, 4(2):213-218.

von Wyl, V; Yerly, S; Böni, J; Shah, C; Cellerai, C; Klimkait, T; Battegay, M; Bernasconi, E; Cavassini, M; Furrer, H; Hirschel, B; Vernazza, P L; Ledergerber, B; Günthard, H F (2012). Incidence of HIV-1 drug resistance among antiretroviral treatment-naive individuals starting modern therapy combinations. Clinical Infectious Diseases, 54(1):131-140.

Müller, N J; Fishman, J A (2012). Infections in the liver transplant recipient. In: Clavien, P A; Trotter, J F; Müllhaupt, B. Medical care of the liver transplant patient. Chichester, UK: Wiley-Blackwell, 380-388.

Leventhal, Gabriel E; Kouyos, Roger; Stadler, Tanja; von Wyl, Viktor; Yerly, Sabine; Böni, Jürg; Cellerai, Cristina; Klimkait, Thomas; Günthard, Huldrych F; Bonhoeffer, Sebastian (2012). Inferring epidemic contact structure from phylogenetic trees. PLoS Computational Biology, 8(3):e1002413.

Duprez, Daniel A; Neuhaus, Jacqueline; Kuller, Lewis H; Tracy, Russell; Belloso, Waldo; De Wit, Stephane; Drummond, Fraser; Lane, H Clifford; Ledergerber, Bruno; Lundgren, Jens; Nixon, Daniel; Paton, Nicholas I; Prineas, Ronald J; Neaton, James D (2012). Inflammation, coagulation and cardiovascular disease in HIV-infected individuals. PLoS ONE, 7(9):e44454.

Herbeck, J T; Müller, V; Maust, B S; Ledergerber, B; Torti, C; Di Giambenedetto, S; Gras, L; Günthard, H F; Jacobson, L P; Mullins, J I; Gottlieb, G S (2012). Is the virulence of HIV changing? A meta-analysis of trends in prognostic markers of HIV disease progression and transmission. AIDS, 26(2):193-205.

Krones, T; Rüegg, C A; Günthard, H F; Rid (Schulz-Baldes), Annette; Wild, V (2012). Kommentar I zum Fall: „Heimlicher Transfer von HIV-Medikamenten nach Afrika“. Ethik in der Medizin, 24(1):59-61.

Bansal, V; Altermatt, S; Nadal, D; Berger, C (2012). Lack of benefit of preoperative antimicrobial prophylaxis in children with acute appendicitis: a prospective cohort study. Infection, 40(6):635-641.

Dobrick, Nadine; Müller, Nicolas; Franzen, Daniel (2012). Legionärskrankheit (Legionellen-Pneumonie). Praxis, 101(23):1459-1467.

Scherrer, Alexandra U; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Furrer, Hansjakob; Calmy, Alexandra; Cavassini, Matthias; Elzi, Luigia; Vernazza, Pietro L; Bernasconi, Enos; Ledergerber, Bruno; Günthard, Huldrych F (2012). Long-Lasting Protection of Activity of Nucleoside Reverse Transcriptase Inhibitors and Protease Inhibitors (PIs) by Boosted PI Containing Regimens. PLoS ONE, 7(11):e50307.

Kowalska, J D; Reekie, J; Mocroft, A; Reiss, P; Ledergerber, B; Gatell, J; D'Arminio Monforte, A; Phillips, A; Lundgren, J D; Kirk, O (2012). Long-term exposure to combination antiretroviral therapy and risk of death from specific causes: no evidence for any previously unidentified increased risk due to antiretroviral therapy. AIDS, 26(3):315-323.

Vrouenraets, S M E; Wit, F W N M; Garcia, E Fernandez; Huber, M; Brinkman, K; Moyle, G; Domingo, P; Tarr, P E; Podzamczer, D; Ristola, M; Gatell, J M; Livrozet, J M; Furrer, H; Reiss, P (2012). Longer prior exposure to zidovudine/lamivudine-containing combination antiretroviral therapy, age, and male gender are each associated with reduced subcutaneous adipose tissue. HIV Clinical Trials, 13(2):103-110.

Staehelin, C; Keiser, O; Calmy, A; Weber, R; Elzi, L; Cavassini, M; Schmid, P; Bernasconi, E; Furrer, H (2012). Longer term clinical and virological outcome of Sub-Saharan African participants on antiretroviral treatment in the Swiss HIV Cohort Study. Journal of Acquired Immune Deficiency Syndromes, 59(1):79-85.

Clifford, G M; Lise, M; Franceschi, S; Egger, M; Bouchardy, C; Korol, D; Levi, F; Ess, S; Jundt, G; Wandeler, G; Fehr, J; Schmid, P; Battegay, M; Bernasconi, E; Cavassini, M; Calmy, A; Keiser, O; Schöni-Affolter, F (2012). Lung cancer in the Swiss HIV Cohort Study: role of smoking, immunodeficiency and pulmonary infection. British Journal of Cancer, 106(3):447-452.

Hugelshofer, M; Achermann, Y; Kovari, H; Dent, W; Hombach, M; Bloemberg, G (2012). Meningoencephalitis with Subdural Empyema Caused by Toxigenic Clostridium perfringens Type A. Journal of Clinical Microbiology, 50(10):3409-3411.

Scherrer, Alexandra U; Ledergerber, Bruno; von Wyl, Viktor; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Cellerai, Cristina; Furrer, Hansjakob; Calmy, Alexandra; Cavassini, Matthias; Elzi, Luigia; Vernazza, Pietro L; Bernasconi, Enos; Günthard, Huldrych F (2012). Minor protease inhibitor mutations at baseline do not increase the risk for a virological failure in HIV-1 subtype B infected patients. PLoS ONE, 7(6):e37983.

Nischang, Marc; Gers-Huber, Gustavo; Audigé, Annette; Akkina, Ramesh; Speck, Robert F (2012). Modeling HIV infection and therapies in humanized mice. Swiss Medical Weekly, 142:w13618.

Lederer, H; Achermann, Y; Tinguely, M; Stenner, F; Fehr, J (2012). Multicentric Castleman's disease as a cause for unclear febrile episodes in a 55-year-old HIV-infected man. Infection, 40(2):203-205.

Nemeth, J; Ledergerber, B; Preiswerk, B; Nobile, A; Karrer, S; Ruef, C; Kuster, S P (2012). Multidrug-resistant bacteria in travellers hospitalized abroad: prevalence, characteristics, and influence on clinical outcome. Journal of Hospital Infection, 82(4):254-259.

Fenner, L; Gagneux, S; Helbling, P; Battegay, M; Rieder, H L; Pfyffer, G E; Zwahlen, M; Furrer, H; Siegrist, H H; Fehr, J; Dolina, M; Calmy, A; Stucki, D; Jaton, K; Janssens, J P; Stalder, J M; Bodmer, T; Ninet, B; Böttger, E C; Egger, M (2012). Mycobacterium tuberculosis transmission in a country with low tuberculosis incidence: Role of immigration and HIV infection. Journal of Clinical Microbiology, 50(2):388-395.

Petrausch, Ulf; Frauenfelder, Thomas; Mueller, Nicolas J; Arn, Kornelius; Stussi, Georg; Schanz, Urs (2012). Optimised radiological diagnosis of hepatic fungal infection during the treatment of leukemia. Mycoses, 55(5):447-453.

Sassi, Monica; Ripamonti, Chiara; Mueller, Nicolas J; Yazaki, Hirohisa; Kutty, Geetha; Ma, Liang; Huber, Charles; Gogineni, Emile; Oka, Shinichi; Goto, Norihiko; Fehr, Thomas; Gianella, Sara; Konrad, Regina; Sing, Andreas; Kovacs, Joseph A (2012). Outbreaks of Pneumocystis pneumonia in 2 renal transplant centers linked to a single strain of Pneumocystis: implications for transmission and virulence. Clinical Infectious Diseases, 54(10):1437-1444.

Huber, M; Ledergerber, B; Sauter, R; Young, J; Fehr, J; Cusini, A; Battegay, M; Calmy, A; Orasch, C; Nicca, D; Bernasconi, E; Jaccard, R; Held, L; Weber, R (2012). Outcome of smoking cessation counselling of HIV-positive persons by HIV care physicians. HIV medicine, 13(7):387-397.

Keiser, O; Spycher, B; Rauch, A; Calmy, A; Cavassini, M; Glass, T R; Nicca, D; Ledergerber, B; Egger, M (2012). Outcomes of antiretroviral therapy in the Swiss HIV Cohort Study: Latent class analysis. AIDS and Behavior, 16(2):245-255.

Thierfelder, C; Weber, R; Elzi, L; Furrer, H; Cavassini, M; Calmy, A; Bernasconi, E; Gutmann, C; Ledergerber, B (2012). Participation, characteristics and retention rates of HIV-positive immigrants in the Swiss HIV Cohort Study. HIV Medicine, 13(2):118-126.

Simmons, Ruth; Sharp, Colin; McClure, C Patrick; Rohrbach, Janine; Kovari, Helen; Frangou, Eleni; Simmonds, Peter; Irving, Will; Rauch, Andri; Bowness, Paul; Klenerman, Paul (2012). Parvovirus 4 infection and clinical outcome in high-risk populations. Journal of Infectious Diseases, 205(12):1816-1820.

Nemeth, Johannes; Winkler, Heide-Maria; Zwick, Ralph H; Müller, Catharina; Rumetshofer, Rudolf; Boeck, Lucas; Burghuber, Otto C; Winkler, Stefan (2012). Peripheral T cell cytokine responses for diagnosis of active tuberculosis. PLoS ONE, 7(4):e35290.

Scherrer, A U; von Wyl, V; Götte, M; Klimkait, T; Cellerai, C; Yerly, S; Böni, J; Held, L; Ledergerber, B; Günthard, H F (2012). Polymorphic mutations associated with the emergence of the multi-nucleoside/tide resistance mutations 69 insertion and Q151M. Journal of Acquired Immune Deficiency Syndromes, 59(2):105-112.

Arab-Alameddine, Mona; Fayet-Mello, Aurélie; Lubomirov, Rubin; Neely, Michael; di Iulio, Julia; Owen, Andrew; Boffito, Marta; Cavassini, Matthias; Günthard, Huldrych F; Rentsch, Katharina; Buclin, Thierry; Aouri, Manel; Telenti, Amalio; Decosterd, Laurent Arthur; Rotger, Margalida; Csajka, Chantal (2012). Population pharmacokinetic analysis and pharmacogenetics of raltegravir in HIV-positive and healthy individuals. Antimicrobial agents and chemotherapy, 56(6):2959-2966.

Petoumenos, Kathy; Worm, Signe W; Fontas, Eric; Weber, Rainer; De Wit, Stephane; Bruyand, Mathias; Reiss, Peter; El-Sadr, Wafaa; Monforte, Antonella D'Arminio; Friis-Møller, Nina; Lundgren, Jens D; Law, Matthew G (2012). Predicting the short-term risk of diabetes in HIV-positive patients: the Data Collection on Adverse Events of Anti-HIV Drugs (D:A:D) study. Journal of the International Aids Society, 15(2):17426.

Braun, J; Held, L; Ledergerber, B (2012). Predictive cross-validation for the choice of linear mixed-effects models with application to data from the Swiss HIV Cohort Study. Biometrics, 68(1):53-61.

Hunziker, Thomas; Berger, Christoph; Staubli, Georg; Tschopp, Alois; Weber, Rainer; Nadal, David; Hatz, Christoph; Schlagenhauf, Patricia (2012). Profile of travel-associated illness in children, Zürich, Switzerland. Journal of Travel Medicine, 19(3):158-162.

Hohlfeld, Sabine K; Günthard, Huldrych F; Zeitz, Jonas; Locher, Pascal; Bachli, Esther (2012). Progressive multi-focal leukoencephalopathy as a rare lethal complication in untreated sarcoidosis. BMJ Case Reports, 2012:online.

Stiasny, K; Aberle, J H; Chmelik, V; Karrer, U; Holzmann, H; Heinz, F X (2012). Quantitative determination of IgM antibodies reduces the pitfalls in the serodiagnosis of tick-borne encephalitis. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology, 54(2):115-120.

Prabhakaran, S; Boehm, A; Metzner, K J; Roth, V (2012). Recovering networks from distance data. Journal of Machine Learning Research, 25:349-364.

Berger, Christoph; Boggian, Katia; Cusini, Alexia; van Delden, Christian; Garzoni, Christian; Hirsch, Hans H; Khanna, Nina; Koller, Michael; Manuel, Oriol; Meylan, Pascal; Nadal, David; Weisser, Maja; Mueller, Nicolas J (2012). Relevance of cohort studies for the study of transplant infectious diseases. Current Opinion in Organ Transplantation, 17(6):581-585.

Young, Jim; Schäfer, Juliane; Fux, Christoph A; Furrer, Hansjakob; Bernasconi, Enos; Vernazza, Pietro; Calmy, Alexandra; Cavassini, Matthias; Weber, Rainer; Battegay, Manuel; Bucher, Heiner C (2012). Renal function in patients with HIV starting therapy with tenofovir and either efavirenz, lopinavir or atazanavir. AIDS, 26(5):567-575.

Nashan, Björn; Gaston, Robert; Emery, Vincent; Säemann, Marcus D; Mueller, Nicolas J; Couzi, Lionel; Dantal, Jacques; Shihab, Fuad; Mulgaonkar, Shamkant; Seun Kim, Yu; Brennan, Daniel C (2012). Review of cytomegalovirus infection findings with mammalian target of rapamycin inhibitor-based immunosuppressive therapy in de novo renal transplant recipients. Transplantation, 93(11):1075-1085.

Pillai, Satish K; Abdel-Mohsen, Mohamed; Guatelli, John; Skasko, Mark; Monto, Alexander; Fujimoto, Katsuya; Yukl, Steven; Greene, Warner C; Kovari, Helen; Rauch, Andri; Fellay, Jacques; Battegay, Manuel; Hirschel, Bernard; Witteck, Andrea; Bernasconi, Enos; Ledergerber, Bruno; Günthard, Huldrych F; Wong, Joseph K (2012). Role of retroviral restriction factors in the interferon-α-mediated suppression of HIV-1 in vivo. Proceedings of the National Academy of Sciences of the United States of America, 109(8):3035-3040.

Sax, Hugo (2012). Seeing the system inside-out. Reflections, 12(3):12-18.

Knaute, Damaris Fröhlich; Graf, Nicole; Lautenschlager, Stephan; Weber, Rainer; Bosshard, Philipp P (2012). Serological Response to Treatment of Syphilis According to Disease Stage and HIV Status. Clinical Infectious Diseases, 55(12):1615-1622.

Kocher, C; Segerer, S; Schleich, A; Caduff, R; Wyler, L G; Müller, V; Beck, B; Blum, J; Kamarachev, J; Mueller, N J (2012). Skin lesions, malaise, and heart failure in a renal transplant recipient. Transplant Infectious Disease, 14(4):391-397.

Bucher, Heiner C; Richter, Werner; Glass, Tracy R; Magenta, Lorenzo; Wang, Qing; Cavassini, Matthias; Vernazza, Pietro; Hirschel, Bernard; Weber, Rainer; Furrer, Hansjakob; Battegay, Manuel; Bernasconi, Enos (2012). Small dense lipoproteins, apolipoprotein B, and risk of coronary events in HIV-infected patients on antiretroviral therapy: the Swiss HIV Cohort Study. Journal of Acquired Immune Deficiency Syndromes, 60(2):135-142.

Zbinden, Andrea; Mueller, Nicolas J; Tarr, Philip E; Spröer, Cathrin; Keller, Peter M; Bloemberg, Guido V (2012). Streptococcus tigurinus sp. nov., isolated from blood of patients with endocarditis, meningitis and spondylodiscitis. International Journal of Systematic and Evolutionary Microbiology, 62(Pt 12):2941-2945.

Zbinden, Andrea; Mueller, Nicolas J; Tarr, Philip E; Eich, Gerhard; Schulthess, Bettina; Bahlmann, Anna S; Keller, Peter M; Bloemberg, Guido V (2012). Streptococcus tigurinus, a novel member of the Streptococcus mitis group, causes invasive infections. Journal of Clinical Microbiology, 50(9):2969-2973.

Althaus, Claudia F; Vongrad, Valentina; Niederöst, Barbara; Joos, Beda; Di Giallonardo, Francesca; Rieder, Philip; Pavlovic, Jovan; Trkola, Alexandra; Günthard, Huldrych F; Metzner, Karin J; Fischer, Marek (2012). Tailored enrichment strategy detects low abundant small noncoding RNAs in HIV-1 infected cells. Retrovirology, 9:27.

Sonzogni, O. The Role of Suppressor of Cytokine Signaling 1 and 3 in Human Cytomegalovirus Replication. 2012, University of Zurich, Faculty of Science.

Murray, M; Hogg, R S; Lima, V D; May, M T; Moore, D M; Abgrall, S; Bruyand, M; D'Arminio Monforte, A; Tural, C; Gill, M J; Harris, R J; Reiss, P; Justice, A; Kirk, O; Saag, M; Smith, C J; Weber, R; Rockstroh, J; Khaykin, P; Sterne, J A C (2012). The effect of injecting drug use history on disease progression and death among HIV-positive individuals initiating combination antiretroviral therapy: collaborative cohort analysis. HIV Medicine, 13(2):89-97.

Cozzi-Lepri, A; Paredes, R; Phillips, A N; Clotet, B; Kjaer, J; Von Wyl, V; Kronborg, G; Castagna, A; Bogner, J R; Lundgren, J D (2012). The rate of accumulation of nonnucleoside reverse transcriptase inhibitor (NNRTI) resistance in patients kept on a virologically failing regimen containing an NNRTI. HIV Medicine, 13(1):62-72.

Spormann, Christoph; Achermann, Yvonne; Simmen, Beat R; Schwyzer, Hans-Kaspar; Vogt, Markus; Goldhahn, Jörg; Kolling, Christoph (2012). Treatment strategies for periprosthetic infections after primary elbow arthroplasty. Journal of Shoulder and Elbow Surgery, 21(8):992-1000.

Castagliola, Dominique; Ledergerber, Bruno; Torti, Carlo; van Sighem, Ard; Podzamczer, Daniel; Mocroft, Amanda; Dorrucci, Maria; Masquelier, Bernard; de Luca, Andrea; Jansen, Klaus; De Wit, Stephane; Obel, Niels; Fätkenheuer, Gerd; Touloumi, Giota; Mussini, Cristina; Castagna, Antonella; Stephan, Cristoph; Garcia, Frederico; Zangerle, Robert; Duval, Xavier; Pérez-Hoyos, Santiago; Meyer, Laurence; Ghosn, Jade; Fabre-Colin, Céline; Kjaer, Jesper; Chene, Genevieve; Fabre-Colin, Céline; Kjaer, Jesper; Grarup, Jesper; Costagliola, Dominque; Lodwick, Rebecca; Ledergerber, Bruno; Phillips, Andrew (2012). Trends in virological and clinical outcomes in individuals with HIV-1 infection and virological failure of drugs from three antiretroviral drug classes: a cohort study. The Lancet infectious diseases, 12(2):119-127.

Fenner, Lukas; Gagneux, Sebastien; Janssens, Jean-Paul; Fehr, Jan; Cavassini, Matthias; Hoffmann, Matthias; Bernasconi, Enos; Schrenzel, Jacques; Bodmer, Thomas; Böttger, Erik C; Helbling, Peter; Egger, Matthias (2012). Tuberculosis in HIV-negative and HIV-infected patients in a low-incidence country: clinical characteristics and treatment outcomes. PLoS ONE, 7(3):e34186.

Taylor, N; Grabmeier-Pfistershammer, K; Oberkofler, H; Egle, A; Rieger, A; Ledergerber, B (2012). Upgraded Cobas TaqMan version 2: hidden consequences at cohort level. Journal of the International Aids Society, 15(6):18207.

Thierfelder, C; Keller, P M; Kocher, C; Gaudenz, R; Hombach, M; Bloemberg, G V; Ruef, C (2012). Vancomycin-resistant Enterococcus. Swiss Medical Weekly, 142(142):0.

Stenzinger, Albrecht; Nemeth, Johannes; Klauschen, Frederick; Schewe, Christiane; Ladhoff, Axel-Michael; Muckenhuber, Alexander; Schürmann, Mariana; Schürmann, Dirk; Weichert, Wilko (2012). Visceral leishmaniasis in a patient with AIDS: early pathological diagnosis using conventional histology, PCR and electron microscopy is the key for adequate treatment. Virchows Archiv, 460(3):357-60.

Henn, Matthew R; Boutwell, Christian L; Charlebois, Patrick; Lennon, Niall J; Power, Karen A; Macalalad, Alexander R; Berlin, Aaron M; Malboeuf, Christine M; Ryan, Elizabeth M; Gnerre, Sante; Zody, Michael C; Erlich, Rachel L; Green, Lisa M; Berical, Andrew; Wang, Yaoyu; Casali, Monica; Streeck, Hendrik; Bloom, Allyson K; Dudek, Tim; Tully, Damien; Newman, Ruchi; Axten, Karen L; Gladden, Adrianne D; Battis, Laura; Kemper, Michael; Zeng, Qiandong; Shea, Terrance P; Gujja, Sharvari; Zedlack, Carmen; Gasser, Olivier; Brander, Christian; Hess, Christoph; Günthard, Huldrych F; Brumme, Zabrina L; Brumme, Chanson J; Bazner, Suzane; Rychert, Jenna; Tinsley, Jake P; Mayer, Ken H; Rosenberg, Eric; Pereyra, Florencia; Levin, Joshua Z; Young, Sarah K; Jessen, Heiko; Altfeld, Marcus; Birren, Bruce W; Walker, Bruce D; Allen, Todd M (2012). Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection. PLoS Pathogens, 8(3):e1002529.

Johnson, V A; Calvez, V; Gunthard, H F; Paredes, R; Pillay, D; Shafer, R; Wensing, A M; Richman, D D (2011). 2011 update of the drug resistance mutations in HIV-1. Topics in Antiviral Medicine, 19(4):156-164.

Kocher, C; Weber, R; Friedl, A (2011). A case study of female genital tuberculosis in a Western European setting. Infection, 39(1):59-63.

Wandeler, G; Keiser, O; Hirschel, B; Günthard, H F; Bernasconi, E; Battegay, M; Clerc, O; Vernazza, P L; Furrer, H (2011). A comparison of initial antiretroviral therapy in the Swiss HIV Cohort Study and the recommendations of the International AIDS Society-USA. PLoS ONE, 6(12):e27903.

Reekie, J; Reiss, P; Ledergerber, B; Sedlacek, D; Parczewski, M; Gatell, J; Katlama, C; Fätkenheuer, G; Lundgren, J D; Mocroft, A (2011). A comparison of the long-term durability of nevirapine, efavirenz and lopinavir in routine clinical practice in Europe: a EuroSIDA study. HIV Medicine, 12(5):259-268.

Kowalska, J D; Mocroft, A; Ledergerber, B; Florence, E; Ristola, M; Begovac, J; Sambatakou, H; Pedersen, C; Lundgren, J D; Kirk, O (2011). A standardized algorithm for determining the underlying cause of death in HIV infection as AIDS or non-AIDS related: results from the EuroSIDA study. HIV Clinical Trials, 12(2):109-117.

Huelsmann, P M; Hofmann, A D; Knoepfel, S A; Popp, J; Rauch, P; Di Giallonardo, F; Danke, C; Gueckel, E; Schambach, A; Wolff, H; Metzner, K J; Berens, C (2011). A suicide gene approach using the human pro-apoptotic protein tBid inhibits HIV-1 replication. BMC Biotechnology, 11:4.

Marzolini, C; Back, D; Weber, R; Furrer, H; Cavassini, M; Calmy, A; Vernazza, P; Bernasconi, E; Khoo, S; Battegay, M; Elzi, L (2011). Ageing with HIV: medication use and risk for potential drug-drug interactions. Journal of Antimicrobial Chemotherapy, 66(9):2107-2111.

Kouyos, R D; von Wyl, V; Yerly, S; Böni, J; Rieder, P; Joos, B; Taffé, P; Shah, C; Bürgisser, P; Klimkait, T; Weber, R; Hirschel, B; Cavassini, M; Rauch, A; Battegay, M; Vernazza, P L; Bernasconi, E; Ledergerber, B; Bonhoeffer, S; Günthard, H F (2011). Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection. Clinical Infectious Diseases, 52(4):532-539.

Røysland, K; Gran, J M; Ledergerber, B; von Wyl, V; Young, J; Aalen, O O (2011). Analyzing direct and indirect effects of treatment using dynamic path analysis applied to data from the Swiss HIV Cohort Study. Statistics in Medicine, 30(24):2947-2958.

Ruef, C (2011). Antibiotic resistance really starts to hurt. Infection, 39(6):499-500.

Kouyos, R D; von Wyl, V; Hinkley, T; Petropoulos, C J; Haddad, M; Whitcomb, J M; Böni, J; Yerly, S; Cellerai, C; Klimkait, T; Günthard, H F; Bonhoeffer, S (2011). Assessing predicted HIV-1 replicative capacity in a clinical setting. PLoS Pathogens, 7(11):e1002321.

Lubomirov, R; Colombo, S; di Iulio, J; Ledergerber, B; Martinez, R; Cavassini, M; Hirschel, B; Bernasconi, E; Elzi, L; Vernazza, P; Furrer, H; Günthard, H F; Telenti, A (2011). Association of pharmacogenetic markers with premature discontinuation of first-line anti-HIV therapy: an observational cohort study. Journal of Infectious Diseases, 203(2):246-257.

Ruef, C (2011). Borrelia burgdorferi bacteremia. Infection, 39(1):1.

Rampini, S K; Bloemberg, G V; Keller, P M; Büchler, A C; Dollenmaier, G; Speck, R F; Böttger, E C (2011). Broad-range 16S rRNA gene polymerase chain reaction for diagnosis of culture-negative bacterial infections. Clinical Infectious Diseases, 53(12):1245-1251.

Baker, J V; Neuhaus, J; Duprez, D; Kuller, L H; Tracy, R; Belloso, W H; De Wit, S; Drummond, F; Lane, H C; Ledergerber, B; Lundgren, J; Nixon, D E; Paton, N I; Neaton, J D (2011). Changes in inflammatory and coagulation biomarkers: a randomized comparison of immediate versus deferred antiretroviral therapy in patients with HIV infection. JAIDS Journal of Acquired Immune Deficiency Syndromes, 56(1):36-43.

Achermann, Y; Vogt, M; Spormann, C; Kolling, C; Remschmidt, C; Wüst, J; Simmen, B; Trampuz, A (2011). Characteristics and outcome of 27 elbow periprosthetic joint infection: Results from a 14-year cohort study of 358 elbow prostheses. Clinical Microbiology and Infection, 17(3):432-438.

Rieder, P; Joos, B; Scherrer, A U; Kuster, H; Braun, D; Grube, C; Niederöst, B; Leemann, C; Gianella, S; Metzner, K J; Böni, J; Weber, R; Günthard, H F (2011). Characterization of human immunodeficiency virus type 1 (HIV-1) diversity and tropism in 145 patients with primary HIV-1 infection. Clinical Infectious Diseases, 53(12):1271-1279.

El Amari, E B; Combescure, C; Yerly, S; Calmy, A; Kaiser, L; Hasse, B; Furrer, H; Cavassini, M; Vernazza, P; Hirsch, H H; Bernasconi, E; Hirschel, B (2011). Clinical relevance of cytomegalovirus viraemia(*,†). HIV Medicine, 12(7):394-402.

Ruef, C (2011). Community-onset bacteremia may be an ominous sign. Infection, 39(5):397.

Mugavero, M J; May, M; Ribaudo, H J; Gulick, R M; Riddler, S A; Haubrich, R; Napravnik, S; Abgrall, S; Phillips, A; Harris, R; Gill, M J; de Wolf, F; Hogg, R; Günthard, H F; Chêne, G; D'Arminio Monforte, A; Guest, J L; Smith, C; Murillas, J; Berenguer, J; Wyen, C; Domingo, P; Kitahata, M M; Sterne, J A C; Saag, M S (2011). Comparative effectiveness of initial antiretroviral therapy regimens: ACTG 5095 and 5142 clinical trials relative to ART-CC cohort study. Journal of Acquired Immune Deficiency Syndromes, 58(3):253-260.

Rotger, M; Dalmau, J; Rauch, A; McLaren, P; Bosinger, S E; Martinez, R; Sandler, N G; Roque, A; Liebner, J; Battegay, M; Bernasconi, E; Descombes, P; Erkizia, I; Fellay, J; Hirschel, B; Miró, J M; Palou, E; Hoffmann, M; Massanella, M; Blanco, J; Woods, M; Günthard, H F; de Bakker, P; Douek, D C; Silvestri, G; Martinez-Picado, J; Telenti, A (2011). Comparative transcriptomics of extreme phenotypes of human HIV-1 infection and SIV infection in sooty mangabey and rhesus macaque. Journal of Clinical Investigation, 121(6):2391-2400.

Quiblier, C; Zinkernagel, A S; Schuepbach, R A; Berger-Bächi, B; Senn, M M (2011). Contribution of SecDF to Staphylococcus aureus resistance and expression of virulence factors. BMC Microbiology, 11:72.

Mekker, A. Cytomegalovirus infection and immune senescence: an example of collateral damage. 2011, University of Zurich, Faculty of Science.

Teuffel, O; Kuster, S P; Hunger, S P; Conter, V; Hitzler, J; Ethier, M C; Shah, P S; Beyene, J; Sung, L (2011). Dexamethasone versus prednisone for induction therapy in childhood acute lymphoblastic leukemia: a systematic review and meta-analysis. Leukemia, 25(8):1232-1238.

Wagner, C; Preiswerk, B; Weber, R (2011). Disseminated Kaposi sarcoma in newly diagnosed HIV. Infection, 39(1):91.

von Wyl, V; Gianella, S; Fischer, M; Niederoest, B; Kuster, H; Battegay, M; Bernasconi, E; Cavassini, M; Rauch, A; Hirschel, B; Vernazza, P; Weber, R; Joos, B; Günthard, H F (2011). Early antiretroviral therapy during primary HIV-1 infection results in a transient reduction of the viral setpoint upon treatment interruption. PLoS ONE, 6(11):e27463.

Taegtmeyer, A B; Müller, V; Kovari, H; Kullak-Ublick, G A; Corti, N (2011). Effect of continuous venovenous hemodiafiltration on darunavir and raltegravir exposure after administration via a gastroduodenal tube. AIDS, 25(10):1339-1341.

Gianella, S; von Wyl, V; Fischer, M; Niederoest, B; Battegay, M; Bernasconi, E; Cavassini, M; Rauch, A; Hirschel, B; Vernazza, P; Weber, R; Joos, B; Günthard, H F (2011). Effect of early antiretroviral therapy during primary HIV-1 infection on cell-associated HIV-1 DNA and plasma HIV-1 RNA. Antiviral Therapy, 16(4):535-545.

Wittkop, L; Günthard, H F; de Wolf, F; Dunn, D; Cozzi-Lepri, A; de Luca, A; Kücherer, C; Obel, N; von Wyl, V; Masquelier, B; Stephan, C; Torti, C; Antinori, A; García, F; Judd, A; Porter, K; Thiébaut, R; Castro, H; van Sighem, A I; Colin, C; Kjaer, J; Lundgren, J D; Paredes, R; Pozniak, A; Clotet, B; Phillips, A; Pillay, D; Chêne, G (2011). Effect of transmitted drug resistance on virological and immunological response to initial combination antiretroviral therapy for HIV (EuroCoord-CHAIN joint project): a European multicohort study. Lancet Infectious Diseases, 11(5):363-371.

Young, J; Scherrer, A; Günthard, H; Opravil, M; Yerly, S; Böni, J; Rickenbach, M; Fux, C; Cavassini, M; Bernasconi, E; Vernazza, P; Hirschel, B; Battegay, M; Bucher, H (2011). Efficacy, tolerability and risk factors for virological failure of darunavir-based therapy for treatment-experienced HIV-infected patients: the Swiss HIV Cohort Study. HIV Medicine, 12(5):299-307.

Gaudenz, R; Sailer, S; Widmer, G M; Kestenholz, P; Müller, N (2011). Eine Grippe mit Folgen. Swiss Medical Forum, 11(39):681-683.

Scherrer, A U. Emergence, mechanisms and clinical relevance of HIV-1 drug resistance in the era of combination antiretroviral therapy. 2011, University of Zurich, Faculty of Science.

Schöni-Affolter, F; Keiser, O; Mwango, A; Stringer, J; Ledergerber, B; Mulenga, L; Bucher, H C; Westfall, A O;