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Published electronically before print/final form (Epub ahead of print)

Kovari, Helen; Rauch, Andri; Kouyos, Roger; Rougemont, Mathieu; Cavassini, Matthias; Schmid, Patrick; Stöckle, Marcel; Bernasconi, Enos; Weber, Rainer; Ledergerber, Bruno; Swiss HIV Cohort Study (2016). Hepatitis C infection and the risk of non-liver-related morbidity and mortality in HIV-positive persons in the Swiss HIV Cohort Study. Clinical Infectious Diseases:Epub ahead of print.

Bonani, Marco; Frey, Diana; de Rougemont, Olivier; Mueller, Nicolas J; Mueller, Thomas F; Graf, Nicole; Wüthrich, Rudolf P (2016). Infections in de novo kidney transplant recipients treated with the RANKL inhibitor denosumab. Transplantation:Epub ahead of print.

Published in final form

Audigé, Annette; Rochat, Mary-Aude; Li, Duo; Ivic, Sandra; Fahrny, Audrey; Muller, Christina K S; Gers-Huber, Gustavo; Myburgh, Renier; Bredl, Simon; Schlaepfer, Erika; Scherrer, Alexandra U; Kuster, Stefan P; Speck, Roberto F (2017). Long-term leukocyte reconstitution in NSG mice transplanted with human cord blood hematopoietic stem and progenitor cells. BMC Immunology, 18(1):28.

Kang, Mi-Sun; Lim, Hae-Soon; Oh, Jong-Suk; Lim, You-Jin; Wuertz-Kozak, Karin; Harro, Janette M; Shirtliff, Mark E; Achermann, Yvonne (2017). Antimicrobial activity of Lactobacillus salivarius and Lactobacillus fermentum against Staphylococcus aureus. FEMS Pathogens and Disease, 75(2):ftx009.

Han, Sang Hoon; Kumar, D; Ferreira, V H; Egli, A; Hirsch, H H; Weisser, M; Garzoni, C; van Delden, C; Bochud, P Y; Manuel, O; Meylan, P; Boggian, K; Husain, S; Mueller, N J; Humar, A; Swiss Transplant Cohort Study (2017). Human microRNA responses predict cytomegalovirus replication following solid organ transplantation. Journal of Infectious Diseases, 215(4):537-546.

Huber, M; Metzner, K J; Geissberger, F D; Shah, C; Leemann, C; Klimkait, T; Böni, J; Trkola, A; Zagordi, O (2017). MinVar: A rapid and versatile tool for HIV-1 drug resistance genotyping by deep sequencing. Journal of Virological Methods, 240:7-13.

Andreoni, Federica; Zürcher, Claudia; Tarnutzer, Andrea; Schilcher, Katrin; Neff, Andrina; Keller, Nadia; Marques Maggio, Ewerton; Poyart, Claire; Schuepbach, Reto A; Zinkernagel, Annelies S (2017). Clindamycin affects group a streptococcus virulence factors and improves clinical outcome. Journal of Infectious Diseases, 215(2):269-277.

Schäfer, Juliane; Young, Jim; Calmy, Alexandra; Nicca, Dunja; Hasse, Barbara; Brun Del Re, Claudia; Cavassini, Matthias; Bernasconi, Enos; Schmidt-Trucksäss, Arno; Bucher, Heiner C; Swiss HIV Cohort Study (2017). High prevalence of physical inactivity among patients from the Swiss HIV cohort study. AIDS Care, 29(8):1056-1061.

Cecchinato, Valentina; Bernasconi, Enos; Speck, Roberto F; Proietti, Michele; Sauermann, Ulrike; D'Agostino, Gianluca; Danelon, Gabriela; Rezzonico Jost, Tanja; Grassi, Fabio; Raeli, Lorenzo; Schöni-Affolter, Franziska; Stahl-Hennig, Christiane; Uguccioni, Mariagrazia; Swiss HIV Cohort Study (2017). Impairment of CCR6+ and CXCR3+ th cell migration in HIV-1 infection is rescued by modulating actin polymerization. Journal of Immunology, 198(1):184-195.

Shilaih, Mohaned; Marzel, Alex; Braun, Dominique L; Scherrer, Alexandra U; Kovari, Helen; Young, Jim; Calmy, Alexandra; Darling, Katharine; Battegay, Manuel; Hoffmann, Matthias; Bernasconi, Enos; Thurnheer, Maria C; Günthard, Huldrych F; Kouyos, Roger D; Swiss HIV Cohort Study (2017). Factors associated with syphilis incidence in the HIV-infected in the era of highly active antiretrovirals. Medicine, 96(2):e5849.

Sommerstein, Rami; Schreiber, Peter W; Diekema, Daniel J; Edmond, Michael B; Hasse, Barbara; Marschall, Jonas; Sax, Hugo (2017). Mycobacterium chimaera outbreak associated with heater-cooler devices: piecing the puzzle together. Infection Control and Hospital Epidemiology, 38(1):103-108.

Quteineh, L; Bochud, P-Y; Golshayan, D; Crettol, S; Venetz, J-P; Manuel, O; Kutalik, Z; Treyer, A; Lehmann, R; Mueller, N J; Binet, I; van Delden, C; Steiger, J; Mohacsi, P; Dufour, J-F; Soccal, P M; Pascual, M; Eap, C B; Swiss Transplant Cohort Study (2017). CRTC2 polymorphism as a risk factor for the incidence of metabolic syndrome in patients with solid organ transplantation. Pharmacogenomics Journal, 17(1):69-75.

Zweifel, Sandrine A; Mihic-Probst, Daniela; Curcio, Christine A; Barthelmes, Daniel; Thielken, Andrea; Keller, Peter M; Hasse, Barbara; Böni, Christian (2017). Clinical and histopathologic ocular findings in disseminated mycobacterium chimaera infection after cardiothoracic surgery. Ophthalmology, 124(2):178-188.

Bachofner, Jacqueline A; Valli, Piero V; Kröger, Arne; Bergamin, Irina; Künzler, Patrizia; Baserga, Adriana; Braun, Dominique; Seifert, Burkhardt; Moncsek, Anja; Fehr, Jan; Semela, David; Magenta, Lorenzo; Müllhaupt, Beat; Terziroli Beretta-Piccoli, Benedetta; Mertens, Joachim C (2017). DAA treatment of chronic hepatitis C results in rapid regression of transient elastography and fibrosis markers FIB-4 and APRI. Liver International, 37(3):369-376.

Prague, Mélanie; Commenges, Daniel; Gran, Jon Michael; Ledergerber, Bruno; Young, Jim; Furrer, Hansjakob; Thiébaut, Rodolphe (2017). Dynamic models for estimating the effect of HAART on CD4 in observational studies: Application to the Aquitaine Cohort and the Swiss HIV Cohort Study. Biometrics, 73(1):294-304.

Hoenigl, Martin; Braun, Dominique L; Kouyos, Roger; Günthard, Huldrych F; Little, Susan J (2017). Evaluation of the predictive potential of the short acute retroviral syndrome severity score for HIV-1 disease progression in individuals with acute HIV infection. Journal of Acquired Immune Deficiency Syndromes, 74(4):e114-e117.

Béguelin, Charles; Moradpour, Darius; Sahli, Roland; Suter-Riniker, Franziska; Lüthi, Alexander; Cavassini, Matthias; Günthard, Huldrych F; Battegay, Manuel; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Braun, Dominique; Furrer, Hansjakob; Rauch, Andri; Wandeler, Gilles (2017). Hepatitis delta-associated mortality in HIV/HBV-coinfected patients. Journal of Hepatology, 66(2):297-303.

Judd, A; et al; Ledergerber, B (2017). Higher rates of triple-class virological failure in perinatally HIV-infected teenagers compared with heterosexually infected young adults in Europe. HIV Medicine, 18(3):171-180.

Ghisla, Virginia; Scherrer, Alexandra U; Nicca, Dunja; Braun, Dominique L; Fehr, Jan S (2017). Incidence of hepatitis C in HIV positive and negative men who have sex with men 2000-2016: a systematic review and meta-analysis. Infection, 45(3):309-321.

Del Amo, Julia (2017). Inequalities by educational level in response to combination antiretroviral treatment and survival in HIV-positive men and women in Europe (1996-2013): a collaborative cohort study. AIDS, 31(2):253-262.

Marzel, Alex; Heinrich, Henriette; Schilliger, Lukas; Fehr, Jan S; Günthard, Huldrych F; Kouyos, Roger; Rampini, Silvana K (2017). Prescription of post-exposure prophylaxis for HIV-1 in the emergency room: correct transmission risk assessment remains challenging. Journal of Acquired Immune Deficiency Syndromes, 74(4):359-366.

Martin-Gandul, Cecilia; Stampf, Susanne; Héquet, Delphine; Mueller, Nicolas J; Cusini, Alexia; van Delden, Christian; Khanna, Nina; Boggian, Katia; Hirzel, Cédric; Soccal, Paola; Hirsch, Hans H; Pascual, Manuel; Meylan, Pascal; Manuel, Oriol (2017). Preventive strategies against cytomegalovirus and incidence of α-herpesvirus infections in olid-organ transplant recipients: A nationwide cohort study. American Journal of Transplantation, 17(7):1813-1822.

Rochat, M A; Schlaepfer, E; Speck, R F (2017). Promising role of toll-like receptor 8 agonist in concert with prostratin for activation of silent HIV. Journal of Virology, 91(4):e02084-16.

Combes, J D; Clifford, G M; Egger, M; Cavassini, M; Hirsch, H; Hauser, C; Calmy, A; Schmid, P; Bernasconi, E; Gunthard, H F; Franceschi, S; Waterboer, T; Scherrer, A U (2016). Human papillomavirus antibody response following highly active antiretroviral therapy initiation among men who have sex with men. AIDS, 31(4):561-569.

Müller, Nicolas; Lenherr, Renato (2016). Spende nach Herztod und Hirntod: Gibt es einen Unterschied? In: Tag, Brigitte; Gross, Dominik; Mausbach, Julian. Transplantation – Transmortalität, Rechtliche und ethische Kontroversen. dike verlag: dike, 41.

Seidl, Kati; Leemann, Michèle; Palheiros Marques, Miguel; Rachmühl, Carole; Leimer, Nadja; Andreoni, Federica; Achermann, Yvonne; Zinkernagel, Annelies S (2016). High level methicillin resistance correlates with reduced Staphylococcus aureus endothelial cell damage. International Journal of Medical Microbiology : IJMM, 307(1):11-20.

COHERE (2016). Changing Incidence and Risk Factors for Kaposi Sarcoma by Time Since Starting Antiretroviral Therapy: Collaborative Analysis of 21 European Cohort Studies. Clinical Infectious Diseases, 63(10):1373-1379.

Günthard, Huldrych F; Scherrer, Alexandra U (2016). HIV-1 subtype C, tenofovir, and the relationship with treatment failure and drug resistance. Journal of Infectious Diseases, 214(9):1289-1291.

Mertz, Dominik; Fadel, Shaza A; Lam, Po-Po; Tran, Dat; Srigley, Jocelyn A; Asner, Sandra A; Science, Michelle; Kuster, Stefan P; Nemeth, Johannes; Johnstone, Jennie; Ortiz, Justin R; Loeb, Mark (2016). Herd effect from influenza vaccination in non-healthcare settings: a systematic review of randomised controlled trials and observational studies. Eurosurveillance, 21(42):2.

Wang, Qing; De Luca, Andrea; Smith, Colette; Zangerle, Robert; Sambatakou, Helen; Bonnet, Fabrice; Smit, Colette; Schommers, Philipp; Thornton, Alicia; Berenguer, Juan; Peters, Lars; Spagnuolo, Vincenzo; Ammassari, Adriana; Antinori, Andrea; Roldan, Eugenia Quiros; Mussini, Cristina; Miro, Jose M; Konopnicki, Deborah; Fehr, Jan; Campbell, Maria A; Termote, Monique; Bucher, Heiner C; Hepatitis Coinfection and Non Hodgkin Lymphoma project team for (2016). Chronic hepatitis B and C virus infection and risk for non-hodgkin lymphoma in HIV-infected patients: a cohort study. Annals of Internal Medicine, 166(1):9-17.

Bossard, Daniel A; Ledergerber, Bruno; Zingg, Patrick O; Gerber, Christian; Zinkernagel, Annelies S; Zbinden, Reinhard; Achermann, Yvonne (2016). Optimal length of cultivation time for isolation of propionibacterium acnes in suspected bone and joint infections is more than 7 days. Journal of Clinical Microbiology, 54(12):3043-3049.

Sauter, Rafael; Huang, Ruizhu; Ledergerber, Bruno; Battegay, Manuel; Bernasconi, Enos; Cavassini, Matthias; Furrer, Hansjakob; Hoffmann, Matthias; Rougemont, Mathieu; Günthard, Huldrych F; Held, Leonhard; Swiss HIV Cohort Study (2016). CD4/CD8 ratio and CD8 counts predict CD4 response in HIV-1-infected drug naive and in patients on cART. Medicine, 95(42):e5094.

Cain, Lauren E; Caniglia, Ellen C; Phillips, Andrew; Olson, Ashley; Muga, Roberto; Pérez-Hoyos, Santiago; Abgrall, Sophie; Costagliola, Dominique; Rubio, Rafael; Jarrín, Inma; Bucher, Heiner; Fehr, Jan; van Sighem, Ard; Reiss, Peter; Dabis, François; Vandenhende, Marie-Anne; Logan, Roger; Robins, James; Sterne, Jonathan A C; Justice, Amy; Tate, Janet; Touloumi, Giota; Paparizos, Vasilis; Esteve, Anna; Casabona, Jordi; Seng, Rémonie; Meyer, Laurence; Jose, Sophie; Sabin, Caroline; Hernán, Miguel A; et al (2016). Efavirenz versus boosted atazanavir-containing regimens and immunologic, virologic, and clinical outcomes: A prospective study of HIV-positive individuals. Medicine, 95(41):e5133.

Wandeler, Gilles; Mulenga, Lloyd; Vinikoor, Michael J; Kovari, Helen; Battegay, Manuel; Calmy, Alexandra; Cavassini, Matthias; Bernasconi, Enos; Schmid, Patrick; Bolton-Moore, Carolyn; Sinkala, Edford; Chi, Benjamin H; Egger, Matthias; Rauch, Andri; for IeDEA-Southern Africa and the Swiss HIV Cohort Study (2016). Liver fibrosis in treatment-naïve HIV-infected and HIV/HBV co-infected patients: Zambia and Switzerland compared. International Journal of Infectious Diseases, 51:97-102.

Schilcher, Katrin; Andreoni, Federica; Dengler Haunreiter, Vanina; Seidl, Kati; Hasse, Barbara; Zinkernagel, Annelies S (2016). Modulation of staphylococcus aureus biofilm matrix by subinhibitory concentrations of clindamycin. Antimicrobial Agents and Chemotherapy, 60(10):5957-5967.

Schreiber, Peter W; Kuster, Stefan P; Hasse, Barbara; Bayard, Cornelia; Rüegg, Christian; Kohler, Philipp; Keller, Peter M; Bloemberg, Guido V; Maisano, Francesco; Bettex, Dominique; Halbe, Maximilian; Sommerstein, Rami; Sax, Hugo (2016). Reemergence of Mycobacterium chimaera in Heater-Cooler Units despite Intensified Cleaning and Disinfection Protocol. Emerging Infectious Diseases, 22(10):1830-1833.

Franzen, Daniel; Lim, Marisa; Bratton, Daniel J; Kuster, Stefan P; Kohler, Malcolm (2016). The Roles of the Charlson Comorbidity Index and Time to First Antibiotic Dose as Predictors of Outcome in Pneumococcal Community-Acquired Pneumonia. Lung, 194(5):769-775.

Rusert, Peter; Kouyos, Roger D; Kadelka, Claus; Ebner, Hanna; Schanz, Merle; Huber, Michael; Braun, Dominique L; Hozé, Nathanael; Scherrer, Alexandra; Magnus, Carsten; Weber, Jacqueline; Uhr, Therese; Cippa, Valentina; Thorball, Christian W; Kuster, Herbert; Cavassini, Matthias; Bernasconi, Enos; Hoffmann, Matthias; Calmy, Alexandra; Battegay, Manuel; Rauch, Andri; Yerly, Sabine; Aubert, Vincent; Klimkait, Thomas; Böni, Jürg; Fellay, Jacques; Regoes, Roland R; Günthard, Huldrych F; Trkola, Alexandra (2016). Determinants of HIV-1 broadly neutralizing antibody induction. Nature Medicine, 22(11):1260-1267.

Ragonnet-Cronin, Manon L; Shilaih, Mohaned; Günthard, Huldrych F; Hodcroft, Emma B; Böni, Jürg; Fearnhill, Esther; Dunn, David; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Yang, Wan-Lin; Brown, Alison E; Lycett, Samantha J; Kouyos, Roger; Brown, Andrew J Leigh (2016). A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland. Scientific Reports, 6:32251.

Gjærde, Lars I; Shepherd, Leah; Jablonowska, Elzbieta; Lazzarin, Adriano; Rougemont, Mathieu; Darling, Katharine; Battegay, Manuel; Braun, Dominique; Martel-Laferriere, Valerie; Lundgren, Jens D; Rockstroh, Jürgen K; Gill, John; Rauch, Andri; Mocroft, Amanda; Klein, Marina B; Peters, Lars (2016). Trends in Incidences and Risk Factors for Hepatocellular Carcinoma and Other Liver Events in HIV and Hepatitis C Virus-coinfected Individuals From 2001 to 2014: A Multicohort Study. Clinical Infectious Diseases, 63(6):821-829.

Oberle, Corinna S; Joos, Beda; Rusert, Peter; Campbell, Nottania K; Beauparlant, David; Kuster, Herbert; Weber, Jacqueline; Schenkel, Corinne D; Scherrer, Alexandra U; Magnus, Carsten; Kouyos, Roger; Rieder, Philip; Niederöst, Barbara; Braun, Dominique L; Pavlovic, Jovan; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Trkola, Alexandra; Metzner, Karin J; Günthard, Huldrych F (2016). Tracing HIV-1 transmission: envelope traits of HIV-1 transmitter and recipient pairs. Retrovirology, 13(1):62.

Stewardson, Andrew James; Sax, Hugo; Gayet-Ageron, Angèle; Touveneau, Sylvie; Longtin, Yves; Zingg, Walter; Pittet, Didier (2016). Enhanced performance feedback and patient participation to improve hand hygiene compliance of health-care workers in the setting of established multimodal promotion: a single-centre, cluster randomised controlled trial. Lancet Infectious Diseases, 16(12):1345-1355.

Vetter, Luzia; Schuepfer, Guido; Kuster, Stefan P; Rossi, Marco (2016). A Hospital-wide Outbreak of Serratia marcescens, and Ishikawa's "Fishbone" Analysis to Support Outbreak Control. Quality management in health care, 25(1):1-7.

Montazeri, Hesam; Kuipers, Jack; Kouyos, Roger; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Günthard, Huldrych F; Beerenwinkel, Niko (2016). Large-scale inference of conjunctive Bayesian networks. Bioinformatics, 32(17):i727-i735.

Salazar-Vizcaya, Luisa; Kouyos, Roger D; Zahnd, Cindy; Wandeler, Gilles; Battegay, Manuel; Darling, Katharine Elizabeth Anna; Bernasconi, Enos; Calmy, Alexandra; Vernazza, Pietro; Furrer, Hansjakob; Egger, Matthias; Keiser, Olivia; Rauch, Andri; Swiss HIV Cohort Study (2016). Hepatitis C virus transmission among human immunodeficiency virus-infected men who have sex with men: Modeling the effect of behavioral and treatment interventions. Hepatology, 64(6):1856-1869.

Shilaih, Mohaned; Marzel, Alex; Scherrer, Alexandra U; Braun, Dominique L; Kovari, Helen; Rougemont, Mathieu; Darling, Katharine; Battegay, Manuel; Hoffmann, Matthias; Bernasconi, Enos; Hirzel, Cedric; Günthard, Huldrych F; Kouyos, Roger D (2016). Dually Active HIV/HBV Antiretrovirals as Protection Against Incident Hepatitis B Infections: Potential for Prophylaxis. Journal of Infectious Diseases, 214(4):599-606.

Martinez-Picado, Javier; McLaren, Paul J; Erkizia, Itziar; Martin, Maureen P; Benet, Susana; Rotger, Margalida; Dalmau, Judith; Ouchi, Dan; Wolinsky, Steven M; Penugonda, Sudhir; Günthard, Huldrych F; Fellay, Jacques; Carrington, Mary; Izquierdo-Useros, Nuria; Telenti, Amalio (2016). Identification of Siglec-1 null individuals infected with HIV-1. Nature Communications, 7:12412.

Scherrer, Alexandra U; Yang, Wan-Lin; Kouyos, Roger D; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Cavassini, Matthias; Battegay, Manuel; Hauser, Christoph; Calmy, Alexandra; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F (2016). Successful Prevention of Transmission of Integrase Resistance in the Swiss HIV Cohort Study. Journal of Infectious Diseases, 214(3):399-402.

Scherrer, Alexandra U; Bloemberg, Guido; Zbinden, Reinhard; Zinkernagel, Annelies S; Fuchs, Claudio; Frauenfelder, Sandra; Rancic, Zoran; Mayer, Dieter; Hasse, Barbara (2016). Prosthetic vascular graft infections: bacterial cultures from negative-pressure-wound-therapy foams do not improve diagnostics. Journal of Clinical Microbiology, 54(8):2190-2193.

Maldarelli, Grace A; Piepenbrink, Kurt H; Scott, Alison J; Freiberg, Jeffrey A; Song, Yang; Achermann, Yvonne; Ernst, Robert K; Shirtliff, Mark E; Sundberg, Eric J; Donnenberg, Michael S; von Rosenvinge, Erik C (2016). Type IV pili promote early biofilm formation by Clostridium difficile. FEMS Pathogens and Disease, 74(6):ftw061.

Stuehler, Claudia; Bernardini, Claudia; Elzi, Luigia; Stoeckle, Marcel; Zimmerli, Stefan; Furrer, Hansjakob; Günthard, Huldrych F; Leibundgut-Landmann, Salomé; Battegay, Manuel; Khanna, Nina (2016). Immune recovery in HIV-infected patients after Candida esophagitis is impaired despite long-term antiretroviral therapy. AIDS, 30(12):1923-1933.

Woytschak, Janine; Keller, Nadia; Krieg, Carsten; Impellizzieri, Daniela; Thompson, Robert W; Wynn, Thomas A; Zinkernagel, Annelies S; Boyman, Onur (2016). Type 2 Interleukin-4 Receptor Signaling in Neutrophils Antagonizes Their Expansion and Migration during Infection and Inflammation. Immunity, 45(1):172-184.

Ryom, Lene; Lundgren, Jens Dilling; De Wit, Stéphane; Kovari, Helen; Reiss, Peter; Law, Matthew; El-Sadr, Wafa; Monforte, Antonella D'Arminio; Mocroft, Amanda; Smith, Colette; Fontas, Eric; Dabis, Francois; Phillips, Andrew; Sabin, Caroline; D:A:D Study Group (2016). Use of antiretroviral therapy and risk of end-stage liver disease and hepatocellular carcinoma in HIV-positive persons. AIDS, 30(11):1731-1743.

Uchiyama, Satoshi; Keller, Nadia; Schlaepfer, Erika; Grube, Christina; Schuepbach, Reto A; Speck, Roberto F; Zinkernagel, Annelies S (2016). Interferon α-enhanced clearance of group a streptococcus despite neutropenia. Journal of Infectious Diseases, 214(2):321-328.

Günthard, Huldrych F; Saag, Michael S; Benson, Constance A; del Rio, Carlos; Eron, Joseph J; Gallant, Joel E; Hoy, Jennifer F; Mugavero, Michael J; Sax, Paul E; Thompson, Melanie A; Gandhi, Rajesh T; Landovitz, Raphael J; Smith, Davey M; Jacobsen, Donna M; Volberding, Paul A (2016). Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2016 Recommendations of the International Antiviral Society-USA Panel. JAMA : the Journal of the American Medical Association, 316(2):191-210.

Héquet, Delphine; Kralidis, Georg; Carrel, Thierry; Cusini, Alexia; Garzoni, Christian; Hullin, Roger; Meylan, Pascal R; Mohacsi, Paul; Mueller, Nicolas J; Ruschitzka, Frank; Tozzi, Piergiorgio; van Delden, Christian; Weisser, Maja; Wilhelm, Markus J; Pascual, Manuel; Manuel, Oriol (2016). Ventricular assist devices as bridge to heart transplantation: impact on post-transplant infections. BMC Infectious Diseases, 16:321.

Sax, Hugo; Kuster, Stefan P; Tehrany, Yassaman Alipour; Ren, Ruoxi; Uçkay, Ilker; Agostinho, Americo; Stephan, François; Wachsmuth, Maud; Walder, Bernard; Hoffmeyer, Pierre; Pittet, Didier (2016). Eight-year sustainability of a successful intervention to prevent urinary tract infection: A mixed-methods study. American Journal of Infection Control, 44(7):820-824.

Niedrig, David; Maechler, Sarah; Hoppe, Liesa; Corti, Natascia; Kovari, Helen; Russmann, Stefan (2016). Drug safety of macrolide and quinolone antibiotics in a tertiary care hospital: administration of interacting co-medication and QT prolongation. European Journal of Clinical Pharmacology, 72(7):859-67.

Tschan-Plessl, Astrid; Stern, Martin; Schmied, Laurent; Retière, Christelle; Hirsch, Hans H; Garzoni, Christian; van Delden, Christian; Boggian, Katia; Mueller, Nicolas J; Berger, Christoph; Villard, Jean; Manuel, Oriol; Meylan, Pascal; Terszowski, Grzegorz (2016). Human cytomegalovirus infection enhances NK cell activity in vitro. Transplantation Direct, 2(7):e89.

Zahnd, Cindy; Salazar-Vizcaya, Luisa; Dufour, Jean-François; Müllhaupt, Beat; Wandeler, Gilles; Kouyos, Roger; Estill, Janne; Bertisch, Barbara; Rauch, Andri; Keiser, Olivia (2016). Modelling the impact of deferring HCV treatment on liver-related complications in HIV coinfected men who have sex with men. Journal of Hepatology, 65(1):26-32.

Stucki, David; Ballif, Marie; Egger, Matthias; Furrer, Hansjakob; Altpeter, Ekkehardt; Battegay, Manuel; Droz, Sara; Bruderer, Thomas; Coscolla, Mireia; Borrell, Sonia; Zürcher, Kathrin; Janssens, Jean-Paul; Calmy, Alexandra; Mazza Stalder, Jesica; Jaton, Katia; Rieder, Hans L; Pfyffer, Gaby E; Siegrist, Hans H; Hoffmann, Matthias; Fehr, Jan; Dolina, Marisa; Frei, Reno; Schrenzel, Jacques; Böttger, Erik C; Gagneux, Sebastien; Fenner, Lukas (2016). Standard genotyping overestimates transmission of mycobacterium tuberculosis among immigrants in a low-incidence country. Journal of Clinical Microbiology, 54(7):1862-1870.

Hatleberg, Camilla Ingrid; Ryom, Lene; El-Sadr, Wafaa; Smith, Colette; Weber, Rainer; Reiss, Peter; Fontas, Eric; Dabis, Francois; Law, Matthew; Monforte, Antonella d'Arminio; De Wit, Stephane; Mocroft, Amanda; Phillips, Andrew; Lundgren, Jens D; Sabin, Caroline (2016). Improvements over time in short-term mortality following myocardial infarction in HIV-positive individuals. AIDS, 30(10):1583-1596.

Shilaih, Mohaned; Marzel, Alex; Yang, Wan Lin; Scherrer, Alexandra U; Schüpbach, Jörg; Böni, Jürg; Yerly, Sabine; Hirsch, Hans H; Aubert, Vincent; Cavassini, Matthias; Klimkait, Thomas; Vernazza, Pietro L; Bernasconi, Enos; Furrer, Hansjakob; Günthard, Huldrych F; Kouyos, Roger (2016). Genotypic Resistance Tests Sequences Reveal the Role of Marginalized Populations in HIV-1 Transmission in Switzerland. Scientific Reports, 6:27580.

Sommerstein, Rami; Rüegg, Christian; Kohler, Philipp; Bloemberg, Guido; Kuster, Stefan P; Sax, Hugo (2016). Transmission of mycobacterium chimaera from heater-cooler units during cardiac surgery despite an ultraclean air ventilation system. Emerging Infectious Diseases, 22(6):1008-1013.

Hofmann, Patrick; Hombach, Michael; Seifert, Burkhardt; Schuurmans, Macé M; Bürgi, Urs; Isenring, Bruno; Mueller, Nicolas J; Kohler, Malcolm; Benden, Christian; Huber, Lars C (2016). Isolation of Stenotrophomonas maltophilia in asymptomatic Lung Transplant Recipients: Effects of Treatment on Eradication and Outcome. Clinical Transplantation, 30(8):857-863.

Scherrer, Alexandra U; von Wyl, Viktor; Yang, Wan-Lin; Kouyos, Roger D; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Cavassini, Matthias; Battegay, Manuel; Furrer, Hansjakob; Calmy, Alexandra; Vernazza, Pietro; Bernasconi, Enos; Günthard, Huldrych F (2016). Emergence of acquired HIV-1 drug resistance almost stopped in Switzerland: A 15-year prospective cohort analysis. Clinical Infectious Diseases, 62(10):1310-1317.

Thiébaut, Rodolphe; Jarne, Ana; Routy, Jean-Pierre; Sereti, Irini; Fischl, Margaret; Ive, Prudence; Speck, Roberto F; D'Offizi, Gianpiero; Casari, Salvatore; Commenges, Daniel; Foulkes, Sharne; Natarajan, Ven; Croughs, Thérèse; Delfraissy, Jean-François; Tambussi, Guiseppe; Levy, Yves; Lederman, Michael M (2016). Repeated cycles of recombinant human interleukin 7 in HIV-infected patients with low CD4 t-cell reconstitution on antiretroviral therapy: results of 2 phase II multicenter studies. Clinical Infectious Diseases, 62(9):1178-1185.

De Luca, Andrea; Flandre, Philippe; Dunn, David; Zazzi, Maurizio; Wensing, Annemarie; Santoro, Maria Mercedes; Günthard, Huldrych F; Wittkop, Linda; Kordossis, Theodoros; Garcia, Federico; Castagna, Antonella; Cozzi-Lepri, Alessandro; Churchill, Duncan; De Wit, Stéphane; Brockmeyer, Norbert H; Imaz, Arkaitz; Mussini, Cristina; Obel, Niels; Perno, Carlo Federico; Roca, Bernardino; Reiss, Peter; Schülter, Eugen; Torti, Carlo; van Sighem, Ard; Zangerle, Robert; Descamps, Diane (2016). Improved darunavir genotypic mutation score predicting treatment response for patients infected with HIV-1 subtype B and non-subtype B receiving a salvage regimen. Journal of Antimicrobial Chemotherapy, 71(5):1352-1360.

Leierer, Gisela; Grabmeier-Pfistershammer, Katharina; Steuer, Andrea; Sarcletti, Mario; Geit, Maria; Haas, Bernhard; Taylor, Ninon; Kanatschnig, Manfred; Rappold, Michaela; Ledergerber, Bruno; Zangerle, Robert (2016). A single quantifiable viral load is predictive of virological failure in Human Immunodeficiency Virus (HIV)-infected patients on combination antiretroviral therapy: The Austrian HIV cohort study. Open Forum Infectious Diseases, 3(2):ofw089.

Junier, Thomas; Rotger, Margalida; Biver, Emmanuel; Ledergerber, Bruno; Barceló, Catalina; Bartha, Istvan; Kovari, Helen; Schmid, Patrick; Fux, Christoph; Bernasconi, Enos; Brun Del Re, Claudia; Weber, Rainer; Fellay, Jacques; Tarr, Philip E (2016). Contribution of genetic background and clinical risk factors to low-trauma fractures in human immunodeficiency virus (HIV)-positive persons: the swiss HIV cohort study. Open Forum Infectious Diseases, 3(2):ofw101.

Metzner, Karin J (2016). HIV whole-genome sequencing now: answering still-open questions. Journal of Clinical Microbiology, 54(4):834-835.

Fehr, Jan; Nicca, Dunja; Goffard, Jean-Christophe; Haerry, David; Schlag, Michael; Papastamopoulos, Vasileios; Hoepelman, Andy; Skoutelis, Athanasius; Diazaraque, Ruth; Ledergerber, Bruno (2016). Reasons for not starting antiretroviral therapy in HIV-1-infected individuals: a changing landscape. Infection, 44(4):521-529.

Nakagawa, Fumiyo; van Sighem, Ard; Thiebaut, Rodolphe; Smith, Colette; Ratmann, Oliver; Cambiano, Valentina; Albert, Jan; Amato-Gauci, Andrew; Bezemer, Daniela; Campbell, Colin; Commenges, Daniel; Donoghoe, Martin; Ford, Deborah; Kouyos, Roger; Lodwick, Rebecca; Lundgren, Jens; Pantazis, Nikos; Pharris, Anastasia; Quinten, Chantal; Thorne, Claire; Touloumi, Giota; Delpech, Valerie; Phillips, Andrew (2016). A Method to Estimate the Size and Characteristics of HIV-positive Populations Using an Individual-based Stochastic Simulation Model. Epidemiology, 27(2):247-256.

Cadosch, Dominique; Abel zur Wiesch, Pia; Kouyos, Roger; Bonhoeffer, Sebastian (2016). The Role of Adherence and Retreatment in De Novo Emergence of MDR-TB. PLoS Computational Biology, 12(3):e1004749.

Shepherd, L; Borges, Áh; Ledergerber, B; Domingo, P; Castagna, A; Rockstroh, J; Knysz, B; Tomazic, J; Karpov, I; Kirk, O; Lundgren, J; Mocroft, A (2016). Infection-related and -unrelated malignancies, HIV and the aging population. HIV Medicine, 17(8):590-600.

Noguera-Julian, M; Cozzi-Lepri, A; Di Giallonardo, F; Schuurman, R; Däumer, M; Aitken, S; Ceccherini-Silberstein, F; D'Arminio Monforte, A; Geretti, A M; Booth, C L; Kaiser, R; Michalik, C; Jansen, K; Masquelier, B; Bellecave, P; Kouyos, R D; Castro, E; Furrer, H; Schultze, A; Günthard, H F; Brun-Vezinet, F; Metzner, K J; Paredes, R (2016). Contribution of APOBEC3G/F activity to the development of low-abundance drug-resistant human immunodeficiency virus type 1 variants. Clinical Microbiology and Infection, 22(2):191-200.

Seifert, David; Di Giallonardo, Francesca; Töpfer, Armin; Singer, Jochen; Schmutz, Stefan; Günthard, Huldrych F; Beerenwinkel, Niko; Metzner, Karin J (2016). A comprehensive analysis of primer IDs to study heterogeneous HIV-1 populations. Journal of Molecular Biology, 428(1):238-250.

McLaren, Paul J; Raisaro, Jean Louis; Aouri, Manel; Rotger, Margalida; Ayday, Erman; Bartha, István; Delgado, Maria B; Vallet, Yannick; F Günthard, Huldrych; Cavassini, Matthias; Furrer, Hansjakob; Doco-Lecompte, Thanh; Marzolini, Catia; Schmid, Patrick; Di Benedetto, Caroline; Decosterd, Laurent A; Fellay, Jacques; Hubaux, Jean-Pierre; Telenti, Amalio (2016). Privacy-preserving genomic testing in the clinic: a model using HIV treatment. Genetics in Medicine, 18(8):814-822.

Marzel, Alex; Shilaih, Mohaned; Yang, Wan-Lin; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Braun, Dominique L; Calmy, Alexandra; Furrer, Hansjakob; Cavassini, Matthias; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Günthard, Huldrych F; Kouyos, Roger D; Swiss HIV Cohort Study (2016). HIV-1 transmission during recent infection and during treatment interruptions as major drivers of new infections in the Swiss HIV Cohort Study. Clinical Infectious Diseases, 62(1):115-122.

Elzi, Luigia; Conen, Anna; Patzen, Annalea; Fehr, Jan; Cavassini, Matthias; Calmy, Alexandra; Schmid, Patrick; Bernasconi, Enos; Furrer, Hansjakob; Battegay, Manuel (2016). Ability to work and employment rates in human immunodeficiency virus (HIV)-1-infected individuals receiving combination antiretroviral therapy: The Swiss HIV cohort study. Open Forum Infectious Diseases, 3(1):ofw022.

Kovari, Helen; Sabin, Caroline A; Ledergerber, Bruno; Ryom, Lene; Reiss, Peter; Law, Matthew; Pradier, Christian; Dabis, Francois; d'Arminio Monforte, Antonella; Smith, Colette; de Wit, Stephane; Kirk, Ole; Lundgren, Jens D; Weber, Rainer (2016). Antiretroviral drugs and risk of chronic alanine aminotransferase elevation in human immunodeficiency virus (HIV)-monoinfected persons: the data collection on adverse events of anti-HIV drugs study. Open Forum Infectious Diseases, 3(1):ofw009.

Aouri, Manel; Barcelo, Catalina; Ternon, Béatrice; Cavassini, Matthias; Anagnostopoulos, Alexia; Yerly, Sabine; Hugues, Henry; Vernazza, Pietro; Günthard, Huldrych F; Buclin, Thierry; Telenti, Amalio; Rotger, Margalida; Decosterd, Laurent A (2016). in vivo profiling and distribution of known and novel phase I and phase II metabolites of efavirenz in plasma, urine, and cerebrospinal fluid. Drug Metabolism and Disposition, 44(1):151-161.

St John, Elizabeth P; Simen, Birgitte B; Turenchalk, Gregory S; Braverman, Michael S; Abbate, Isabella; Aerssens, Jeroen; Bouchez, Olivier; Gabriel, Christian; Izopet, Jacques; Meixenberger, Karolin; Di Giallonardo, Francesca; Schlapbach, Ralph; Paredes, Roger; Sakwa, James; Schmitz-Agheguian, Gudrun G; Thielen, Alexander; Victor, Martin; Metzner, Karin J; Däumer, Martin P (2016). A follow-up of the multicenter collaborative study on HIV-1 drug resistance and tropism testing using 454 ultra deep pyrosequencing. PLoS ONE, 11(1):e0146687.

Friis-Møller, Nina; Ryom, Lene; Smith, Colette; Weber, Rainer; Reiss, Peter; Dabis, F; De Wit, Stephane; Monforte, Antonella D'Arminio; Kirk, Ole; Fontas, Eric; Sabin, Caroline; Phillips, Andrew; Lundgren, Jens; Law, Matthew (2016). An updated prediction model of the global risk of cardiovascular disease in HIV-positive persons: The Data-collection on Adverse Effects of Anti-HIV Drugs (D:A:D) study. European Journal of Preventive Cardiology, 23(2):214-223.

Villandre, Luc; Stephens, David A; Labbe, Aurelie; Günthard, Huldrych F; Kouyos, Roger; Stadler, Tanja (2016). Assessment of overlap of phylogenetic transmission clusters and communities in simple sexual contact networks: applications to HIV-1. PLoS ONE, 11(2):e0148459.

Jeger, Victor; Hasse, Barbara; Hildenbrand, Florian (2016). CME: Bakterielle Meningitis bei Erwachsenen. Praxis, 105(23):1353-1360.

Meier, Silvan; Hasse, Barbara; Haller, Christlieb (2016). CME: Infektiöse Endokarditis. Praxis, 105(13):739-746.

Aalen, O O; Røysland, K; Gran, J M; Kouyos, R; Lange, T (2016). Can we believe the DAGs? A comment on the relationship between causal DAGs and mechanisms. Statistical Methods in Medical Research, 25(5):2294-2314.

TenoRes Study Group, xx (2016). Global epidemiology of drug resistance after failure of WHO recommended first-line regimens for adult HIV-1 infection: a multicentre retrospective cohort study. Lancet Infectious Diseases, 16(5):565-575.

Zingg, Patrick O; Achermann, Yvonne (2016). Herausforderungen in der Diagnostik der periprothetischen Infektion. Praxis, 105(17):1025-1031.

Clifford, Gary M; Franceschi, Silvia; Keiser, Olivia; Schöni-Affolter, Franziska; Lise, Mauro; Dehler, Silvia; Levi, Fabio; Mousavi, Mohsen; Bouchardy, Christine; Wolfensberger, Aline; Darling, Katharine E; Staehelin, Cornelia; Bertisch, Barbara; Kuenzli, Esther; Bernasconi, Enos; Pawlita, Michael; Egger, Matthias (2016). Immunodeficiency and the risk of cervical intra-epithelial neoplasia 2/3 and cervical cancer: A nested case-control study in the Swiss HIV Cohort Study. International Journal of Cancer, 138(7):1732-1740.

Tarr, Philip; Notter, Julia; Sydow, Véronique; Wirz, Sebastian; Wallnöfer, Astrid; Vollgraff, Michael; Neumayr, Andreas; Berger, Christoph; Battegay, Manuel; Fehr, Jan; Jackson, Yves-Lauren; Posfay-Barbe, Klara; Durieux, Sophie; Ritz, Nicole; Staehelin, Cornelia; Boillat-Blanco, Noémie; Fuchs, Simon; Martin, Brian (2016). Impfungen bei erwachsenen Flüchtlingen. Swiss Medical Forum, 16(49-50):1075-1079.

Notter, Julia; Labhardt, Niklaus; Hatz, Christoph; Wallnöfer, Astrid; Vollgraff, Michael; Ritz, Nicole; Wirz, Sebastian; Berger, Christoph; Battegay, Manuel; Neumayr, Andreas; Fehr, Jan; Jackson, Yves-Laurent; Posfay-Barbe, Klara; Durieux, Sophie; Lanz, Christian; Staehelin, Cornelia; Boillat-Blanco, Noémie; Fuchs, Simon; Martin, Brian; Tarr, Philip (2016). Infektionen bei erwachsenen Flüchtlingen. Swiss Medical Forum, 16(49-50):1067-1074.

Sabin, Caroline A; Reiss, Peter; Ryom, Lene; Phillips, Andrew N; Weber, Rainer; Law, Matthew; Fontas, Eric; Mocroft, Amanda; de Wit, Stephane; Smith, Colette; Dabis, Francois; d'Arminio Monforte, Antonella; El-Sadr, Wafaa; Lundgren, Jens D (2016). Is there continued evidence for an association between abacavir usage and myocardial infarction risk in individuals with HIV? A cohort collaboration. BMC Medicine, 14(1):61.

Kok, Yik Lim; Vongrad, Valentina; Shilaih, Mohaned; Di Giallonardo, Francesca; Kuster, Herbert; Kouyos, Roger; Günthard, Huldrych F; Metzner, Karin J (2016). Monocyte-derived macrophages exhibit distinct and more restricted HIV-1 integration site repertoire than CD4(+) T cells. Scientific Reports, 6:24157.

Leimer, Nadja; Rachmühl, Carole; Palheiros Marques, Miguel; Bahlmann, Anna Sophie; Furrer, Alexandra; Eichenseher, Fritz; Seidl, Kati; Matt, Ulrich; Loessner, Martin J; Schuepbach, Reto A; Zinkernagel, Annelies S (2016). Nonstable staphylococcus aureus small-colony variants are induced by low pH and sensitized to antimicrobial therapy by phagolysosomal alkalinization. Journal of Infectious Diseases, 213(2):305-313.

Aebi-Popp, K; Kouyos, R; Bertisch, B; Staehelin, C; Rudin, C; Hoesli, I; Stoeckle, M; Bernasconi, E; Cavassini, M; Grawe, C; Lecompte, T D; Rickenbach, M; Thorne, C; Martinez de Tejada, B; Fehr, J (2016). Postnatal retention in HIV care: insight from the Swiss HIV Cohort Study over a 15-year observational period. HIV Medicine, 17(4):280-288.

Rodger, Alison J; Cambiano, Valentina; Bruun, Tina; Vernazza, Pietro; Collins, Simon; van Lunzen, Jan; Corbelli, Giulio Maria; Estrada, Vicente; Geretti, Anna Maria; Beloukas, Apostolos; Asboe, David; Viciana, Pompeyo; Gutiérrez, Félix; Clotet, Bonaventura; Pradier, Christian; Gerstoft, Jan; Weber, Rainer; Westling, Katarina; Wandeler, Gilles; Prins, Jan M; Rieger, Armin; Stoeckle, Marcel; Kümmerle, Tim; Bini, Teresa; Ammassari, Adriana; Gilson, Richard; Krznaric, Ivanka; Ristola, Matti; Zangerle, Robert; Handberg, Pia; et al (2016). Sexual activity without condoms and risk of HIV transmission in serodifferent couples when the HIV-positive partner is using suppressive antiretroviral therapy. JAMA : the Journal of the American Medical Association, 316(2):171-182.

Achhra, A C; Mocroft, A; Reiss, P; Sabin, C; Ryom, L; de Wit, S; Smith, C J; d'Arminio Monforte, A; Phillips, A; Weber, R; Lundgren, J; Law, M G (2016). Short-term weight gain after antiretroviral therapy initiation and subsequent risk of cardiovascular disease and diabetes: the D:A:D study. HIV Medicine, 17(4):255-268.

Rampini, Silvana K; Zbinden, Andrea; Speck, Roberto F; Bloemberg, Guido V (2016). Similar efficacy of broad-range ITS PCR and conventional fungal culture for diagnosing fungal infections in non-immunocompromised patients. BMC Microbiology, 16(1):132.

Wandeler, Gilles; Kraus, David; Fehr, Jan; Conen, Anna; Calmy, Alexandra; Orasch, Christina; Battegay, Manuel; Schmid, Patrick; Bernasconi, Enos; Furrer, Hansjakob (2016). The J-curve in HIV: low and moderate alcohol intake predicts mortality but not the occurrence of major cardiovascular events. Journal of Acquired Immune Deficiency Syndromes, 71(3):302-309.

Nemeth, Johannes; Bernasconi, Enos; Heininger, Ulrich; Abbas, Mohamed; Nadal, David; Strahm, Carol; Erb, Stefan; Zimmerli, Stefan; Furrer, Hansjakob; Delaloye, Julie; Kuntzer, Thierry; Altpeter, Ekkehard; Sturzenegger, Mathias; Weber, Rainer (2016). Update of the Swiss guidelines on post-treatment Lyme disease syndrome. Swiss Medical Weekly, 146:w14353.

Saigi-Morgui, Núria; Quteineh, Lina; Bochud, Pierre-Yves; Crettol, Severine; Kutalik, Zoltán; Wojtowicz, Agnieszka; Bibert, Stéphanie; Beckmann, Sonja; Mueller, Nicolas J; Binet, Isabelle; van Delden, Christian; Steiger, Jürg; Mohacsi, Paul; Stirnimann, Guido; Soccal, Paola M; Pascual, Manuel; Eap, Chin B; Swiss Transplant Cohort Study (2016). Weighted genetic risk scores and prediction of weight gain in solid organ transplant populations. PLoS ONE, 11(10):e0164443.

Berger, Christoph; Manuel, Oriol; Müller, Nicolas (2016). Zytomegalie. Swiss Medical Forum, 16(32):635-638.

Cippà, Pietro E; Schiesser, Marc; Ekberg, Henrik; van Gelder, Teun; Mueller, Nicolas J; Cao, Claude A; Fehr, Thomas; Bernasconi, Corrado (2015). Risk Stratification for Rejection and Infection after Kidney Transplantation. Clinical Journal of the American Society of Nephrology, 10(12):2213-2220.

Martin-Gandul, C; Mueller, N J; Pascual, M; Manuel, O (2015). The impact of infection on chronic allograft dysfunction and allograft survival after solid organ transplantation. American Journal of Transplantation, 15(12):3024-3040.

Möllerherm, Helene; Neumann, Ariane; Schilcher, Katrin; Blodkamp, Stefanie; Zeitouni, Nathalie E; Dersch, Petra; Lüthje, Petra; Naim, Hassan Y; Zinkernagel, Annelies S; von Köckritz-Blickwede, Maren (2015). Yersinia enterocolitica-mediated degradation of neutrophil extracellular traps (NETs). FEMS Microbiology Letters, 362(23):fnv192.

Zingg, Walter; Holmes, Alison; Dettenkofer, Markus; Goetting, Tim; Secci, Federica; Clack, Lauren; Allegranzi, Benedetta; Magiorakos, Anna-Pelagia; Pittet, Didier (2015). Hospital organisation, management, and structure for prevention of health-care-associated infection: a systematic review and expert consensus. Lancet Infectious Diseases, 15(2):212-224.

Wensing, Annemarie M; Calvez, Vincent; Günthard, Huldrych F; Johnson, Victoria A; Paredes, Roger; Pillay, Deenan; Shafer, Robert W; Richman, Douglas D (2015). 2015 update of the drug resistance mutations in HIV-1. Topics in Antiviral Medicine, 23(4):132-141.

Denner, Joachim; Mueller, Nicolas J (2015). Preventing transfer of infectious agents. International Journal of Surgery, 23(Pt B):306-311.

Schaerer, V; Haubitz, S; Kovari, H; Ledergerber, B; Ambrosioni, J; Cavassini, M; Stoeckle, M; Schmid, P; Decosterd, L; Aouri, M; Böni, J; Günthard, H F; Furrer, H; Metzner, K J; Fehr, J; Rauch, A (2015). Protease inhibitors to treat hepatitis C in the Swiss HIV Cohort Study: high efficacy but low treatment uptake. HIV Medicine, 16(10):599-607.

Glass, Tracy R; Sterne, Jonathan A C; Schneider, Marie-Paule; De Geest, Sabina; Nicca, Dunja; Furrer, Hansjakob; Günthard, Huldrych F; Bernasconi, Enos; Calmy, Alexandra; Rickenbach, Martin; Battegay, Manuel; Bucher, Heiner C (2015). Self-reported nonadherence to antiretroviral therapy as a predictor of viral failure and mortality. AIDS, 29(16):2195-200.

Kohler, Philipp; Kuster, Stefan P; Bloemberg, Guido; Schulthess, Bettina; Frank, Michelle; Tanner, Felix C; Rössle, Matthias; Böni, Christian; Falk, Volkmar; Wilhelm, Markus J; Sommerstein, Rami; Achermann, Yvonne; Ten Oever, Jaap; Debast, Sylvia B; Wolfhagen, Maurice J H M; Brandon Bravo Bruinsma, George J; Vos, Margreet C; Bogers, Ad; Serr, Annerose; Beyersdorf, Friedhelm; Sax, Hugo; Böttger, Erik C; Weber, Rainer; van Ingen, Jakko; Wagner, Dirk; Hasse, Barbara (2015). Healthcare-associated prosthetic heart valve, aortic vascular graft, and disseminated Mycobacterium chimaera infections subsequent to open heart surgery. European Heart Journal, 36(40):2745-2753.

Young, Jim; Moodie, Erica E M; Abrahamowicz, Michal; Klein, Marina B; Weber, Rainer; Bucher, Heiner C (2015). Incomplete modeling of the effect of antiretroviral therapy on the risk of cardiovascular events. Clinical Infectious Diseases, 61(7):1206-1207.

Schuurmans, Macé M; Palheiros Marques, Miguel; Freitag, Lutz; Zinkernagel, Annelies S; Achermann, Yvonne (2015). Biofilm formation in a permanent tracheal stent implanted for twenty-five years. Respiration, 90(4):327-328.

Beeler, Patrick E; Kuster, Stefan P; Eschmann, Emmanuel; Weber, Rainer; Blaser, Jürg (2015). Earlier switching from intravenous to oral antibiotics owing to electronic reminders. International Journal of Antimicrobial Agents, 46(4):428-433.

Montazeri, Hesam; Günthard, Huldrych F; Yang, Wan-Lin; Kouyos, Roger; Beerenwinkel, Niko (2015). Estimating the dynamics and dependencies of accumulating mutations with applications to HIV drug resistance. Biostatistics, 16(4):713-726.

Salmon, S; Pittet, D; Sax, H; McLaws, M L (2015). The 'My five moments for hand hygiene' concept for the overcrowded setting in resource-limited healthcare systems. Journal of Hospital Infection, 91(2):95-99.

Lewandowska, Dagmara W; Zagordi, Osvaldo; Zbinden, Andrea; Schuurmans, Macé M; Schreiber, Peter; Geissberger, Fabienne-Desirée; Huder, Jon B; Böni, Jürg; Benden, Christian; Mueller, Nicolas J; Trkola, Alexandra; Huber, Michael (2015). Unbiased metagenomic sequencing complements specific routine diagnostic methods and increases chances to detect rare viral strains. Diagnostic Microbiology and Infectious Disease, 83(2):133-138.

von Braun, A; Sekaggya, C; Henning, L; Nakijoba, R; Kambugu, A; Fehr, J; Castelnuovo, B (2015). 'If at first you don't succeed, try again'. Looking beyond the initial results of a failed tuberculosis diagnosis. Public Health Action, 5(3):170-172.

Braun, Dominique L; Kouyos, Roger D; Balmer, Belinda; Grube, Christina; Weber, Rainer; Günthard, Huldrych F (2015). Frequency and spectrum of unexpected clinical manifestations of primary HIV-1 infection. Clinical Infectious Diseases, 61(6):1013-1021.

Kohler, Philipp; Schmidt, Axel J; Cavassini, Matthias; Furrer, Hansjakob; Calmy, Alexandra; Battegay, Manuel; Bernasconi, Enos; Ledergerber, Bruno; Vernazza, Pietro (2015). The HIV care cascade in Switzerland: reaching the UNAIDS/WHO targets for patients diagnosed with HIV. AIDS, 29(18):2509-2515.

Yang, Wan-Lin; Kouyos, Roger D; Scherrer, Alexandra U; Böni, Jürg; Shah, Cyril; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Hirzel, Cédric; Battegay, Manuel; Cavassini, Matthias; Bernasconi, Enos; Vernazza, Pietro; Held, Leonhard; Ledergerber, Bruno; Günthard, Huldrych F (2015). Assessing efficacy of different nucleos(t)ide backbones in NNRTI-containing regimens in the swiss HIV cohort study. Journal of Antimicrobial Chemotherapy:3323-3331.

Leuthard, Deborah; Berger, Christoph; Staubli, Georg; Nadal, David; Schmid, Sabine; Hamer, David; Weber, Rainer; Schlagenhauf, Patricia (2015). Management of children with travel-related illness evaluated in a pediatric emergency room. The Pediatric Infectious Disease Journal, 34(12):1279-1282.

Antinori, Andrea; Clarke, Amanda; Svedhem-Johansson, Veronika; Arribas, José R; Arenas-Pinto, Alejandro; Fehr, Jan; Gerstoft, Jan; Horban, Andrzej; Clotet, Bonaventura; Ripamonti, Diego; Girard, Pierre-Marie; Hill, Andrew M; Moecklinghoff, Christiane (2015). Week 48 efficacy and central nervous system analysis of darunavir/ritonavir monotherapy versus darunavir/ritonavir with two nucleoside analogues. AIDS, 29(14):1811-1820.

Meyer Sauteur, P M; Leimer, N; Chan, P K; Relly, C; Seidl, K; Zinkernagel, A S; Berger, C (2015). Methicillin-resistant Staphylococcus aureus eradication in young infants should include the diaper area and treat housing contacts. Acta Paediatrica:e581-e584.

Kouyos, Roger D; Günthard, Huldrych F (2015). Editorial commentary: the irreversibility of HIV drug resistance. Clinical Infectious Diseases, 61(5):837-839.

Schreiber, Peter W; Aceto, Leonardo; Korach, Raphael; Marreros, Nelson; Ryser-Degiorgis, Marie-Pierre; Günthard, Huldrych F (2015). Cluster of leptospirosis acquired through river surfing in Switzerland. Open Forum Infectious Diseases, 2(3):ofv102.

Swiss HIV Cohort Study; Kovari, Helen; Ledergerber, Bruno; et al (2015). High hepatic and extrahepatic mortality and low treatment uptake in HCV-coinfected persons in the Swiss HIV cohort study between 2001 and 2013. Journal of Hepatology, 63(3):573-580.

CoLaus Cohort; FIRE; Swiss HIV Cohort Study; et al; Hasse, Barbara (2015). Strong Impact of Smoking on Multimorbidity and Cardiovascular Risk Among Human Immunodeficiency Virus-Infected Individuals in Comparison With the General Population. Open Forum Infectious Diseases, 2(3):ofv108.

Birger, Ruthie B; Kouyos, Roger D; Cohen, Ted; Griffiths, Emily C; Huijben, Silvie; Mina, Michael; Volkova, Victoriya; Grenfell, Bryan; Metcalf, C Jessica E (2015). The potential impact of coinfection on antimicrobial chemotherapy and drug resistance. Trends in Microbiology, 23(9):537-44.

Li, Duo; Schlaepfer, Erika; Audigé, Annette; Rochat, Mary-Aude; Ivic, Sandra; Knowlton, Caitlin N; Kim, Baek; Keppler, Oliver T; Speck, Roberto F (2015). Vpx mediated degradation of SAMHD1 has only a very limited effect on lentiviral transduction rate in ex vivo cultured HSPCs. Stem Cell Research, 15(2):271-280.

Achermann, Yvonne; Seidl, Kati; Kuster, Stefan P; Leimer, Nadja; Durisch, Nina; Ajdler-Schäffler, Evelyne; Karrer, Stephan; Senn, Gabriela; Holzmann-Bürgel, Anne; Wolfensberger, Aline; Leone, Antonio; Arlettaz, Romaine; Zinkernagel, Annelies S; Sax, Hugo (2015). Epidemiology of Methicillin-Susceptible Staphylococcus aureus in a Neonatology Ward. Infection Control and Hospital Epidemiology:1-8.

Ruehe, Bettina; Capaul, Riccarda; Müller, Nadja; Sax, Hugo; Hasse, Barbara (2015). Wie lautet Ihre Diagnose? Praxis, 104(17):893-895.

von Braun, Amrei; Thomas, Yves; Sax, Hugo (2015). Do high-touch surfaces in public spaces pose a risk for influenza transmission? A virologic study during the peak of the 2009 influenza A(H1N1) pandemic in Geneva, Switzerland. American Journal of Infection Control, 43(12):1372-1373.

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Battegay, Manuel; Haerry, David Hans-U; Fehr, Jan; Staehelin, Cornelia; Wandeler, Gilles; Elzi, Luigia (2014). Psychosoziale Aspekte bei der Behandlung der HIV-Infektion. Therapeutische Umschau. Revue thérapeutique, 71(8):509-513.

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Günthard, Huldrych F; Aberg, Judith A; Eron, Joseph J; Hoy, Jennifer F; Telenti, Amalio; Benson, Constance A; Burger, David M; Cahn, Pedro; Gallant, Joel E; Glesby, Marshall J; Reiss, Peter; Saag, Michael S; Thomas, David L; Jacobsen, Donna M; Volberding, Paul A (2014). Antiretroviral treatment of adult HIV infection: 2014 recommendations of the International Antiviral Society-USA Panel. JAMA : the Journal of the American Medical Association, 312(4):410-425.

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Braun, D L; Rauch, A; Durisch, N; Eberhard, N; Anagnostopoulos, A; Ledergerber, B; Metzner, K J; Böni, J; Weber, R; Fehr, J (2014). Efficacy of lead-in silibinin and subsequent triple therapy in difficult-to-treat HIV/hepatitis C virus-coinfected patients. HIV Medicine, 15:625-630.

Wensing, Annemarie M; Calvez, Vincent; Günthard, Huldrych F; Johnson, Victoria A; Paredes, Roger; Pillay, Deenan; Shafer, Robert W; Richman, Douglas D (2014). 2014 Update of the drug resistance mutations in HIV-1. Topics in Antiviral Medicine, 22(3):642-650.

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Clack, Lauren; Kuster, Stefan P; Giger, Heidi; Giuliani, Francesca; Sax, Hugo (2014). Low-hanging fruit for human factors design in infection prevention--still too high to reach? American Journal of Infection Control, 42(6):679-681.

Moradigaravand, Danesh; Kouyos, Roger; Hinkley, Trevor; Haddad, Mojgan; Petropoulos, Christos J; Engelstädter, Jan; Bonhoeffer, Sebastian (2014). Recombination accelerates adaptation on a large-scale empirical fitness landscape in HIV-1. PLoS Genetics, 10(6):e1004439.

Landelle, Caroline; Iten, Anne; Uçkay, Ilker; Sax, Hugo; Camus, Véronique; Cohen, Gilles; Renzi, Gesuele; Schrenzel, Jacques; Pittet, Didier; Perrier, Arnaud; Harbarth, Stephan (2014). Does colonization with methicillin-susceptible Staphylococcus aureus protect against nosocomial acquisition of methicillin-resistant S. aureus? Infection Control and Hospital Epidemiology, 35(5):527-533.

Wang, Qing; Young, Jim; Bernasconi, Enos; Vernazza, Pietro; Calmy, Alexandra; Cavassini, Matthias; Furrer, Hansjakob; Fehr, Jan; Bucher, Heiner C; Battegay, Manuel (2014). Virologic and immunologic responses in treatment-naive patients to ritonavir-boosted atazanavir or efavirenz with a common backbone. HIV Clinical Trials, 15(3):92-103.

Wyrzucki, A; Dreyfus, C; Kohler, I; Steck, M; Wilson, I A; Hangartner, L (2014). Alternative Recognition of the Conserved Stem Epitope in Influenza A Virus Hemagglutinin by a VH3-30-Encoded Heterosubtypic Antibody. Journal of Virology, 88(12):7083-7092.

Scharer, Verena; Hafner, Roland; Ciurea, Adrian; Henning, Lars; Somoskovi, Akos; Weber, Rainer; Fehr, Jan (2014). Limitations of medicine:diagnosis and therapy of <<inflammatory>> back pain. Praxis, 103(6):337-340.

Avila, Dorita; Keiser, Olivia; Egger, Matthias; Kouyos, Roger; Böni, Juerg; Yerly, Sabine; Klimkait, Thomas; Vernazza, Pietro L; Aubert, Vincent; Rauch, Andri; Bonhoeffer, Sebastian; Guenthard, Huldrych F; Stadler, Tanja; Spycher, Ben D (2014). Social Meets Molecular: Combining Phylogenetic and Latent Class Analyses to Understand HIV-1 Transmission in Switzerland. American Journal of Epidemiology, 179(12):1514-1525.

Bastidas, Sonia; Graw, Frederik; Smith, Miranda Z; Kuster, Herbert; Günthard, Huldrych F; Oxenius, Annette (2014). CD8+ T cells are activated in an antigen-independent manner in HIV-infected individuals. Journal of Immunology, 192(4):1732-1744.

Schuurmans, M M; Isenring, B D; Jungo, C; Boeni, J; Mueller, N J; Kohler, M; Benden, C (2014). Clinical features and outcomes of influenza infections in lung transplant recipients: a single-season cohort study. Transplant Infectious Disease, 16(3):430-439.

Kouyos, Roger D; Rauch, Andri; Böni, Jürg; Yerli, Sabome; Shah, Cyril; Aubert, Vincent; Klimkait, Thomas; Kovari, Helen; Calmy, Alexandra; Cavassini, Matthias; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Ledergerber, Bruno; Gunthard, Huldrych F (2014). Clustering of HCV coinfections on HIV phylogeny indicates domestic and sexual transmission of HCV. International Journal of Epidemiology, 43(3):887-896.

Rasi, Manuela; Künzler-Heule, Patrizia; Schmid, Patrick; Semela, David; Bruggmann, Philip; Fehr, Jan; Saxer, Susi; Nicca, Dunja (2014). "Fighting an uphill battle": experience with the HCV triple therapy: a qualitative thematic analysis. BMC Infectious Diseases, 14:507.

Braun, Dominique L; Kouyos, Roger; Oberle, Corinna; Grube, Christina; Joos, Beda; Fellay, Jacques; McLaren, Paul J; Kuster, Herbert; Günthard, Huldrych F (2014). A novel acute retroviral syndrome severity score predicts the key surrogate markers for HIV-1 disease progression. PLoS ONE, 9(12):e114111.

Wolfensberger, A; Huber, M; Choschzick, M; Mueller, N J (2014). Abdominale Tuberkulose. Der Gastroenterologe, 9(4):372-377.

Braun, Julia; Held, Leonhard; Ledergerber, Bruno (2014). Accounting for baseline differences and measurement error in the analysis of change over time. Statistics in Medicine, 33(1):2-16.

Haas, Florian; Yamauchi, Kazuma; Murat, Monika; Bernasconi, Michele; Yamanaka, Noboru; Speck, Roberto F; Nadal, David (2014). Activation of NF-kappa B via endosomal toll-like receptor 7 (TLR7) or TLR9 suppresses murine herpesvirus 68 reactivation. Journal of Virology, 88(17):10002-10012.

Simen, Birgitte B; Braverman, Michael S; Abbate, Isabella; Aerssens, Jeroen; Bidet, Yannick; Bouchez, Olivier; Gabriel, Christian; Izopet, Jacques; Kessler, Harald H; Stelzl, Evelyn; Di Giallonardo, Francesca; Schlapbach, Ralph; Radonic, Aleksander; Paredes, Roger; Recordon-Pinson, Patricia; Sakwa, James; St John, Elizabeth P; Schmitz-Agheguian, Gudrun G; Metzner, Karin J; Däumer, Martin P (2014). An international multicenter study on HIV-1 drug resistance testing by 454 ultra-deep pyrosequencing. Journal of Virological Methods, 204:31-37.

Speck, Roberto F (2014). Anti-retroviral Treatment Testing in HIV-infected Humanized Mice. In: Poluektova, Larisa; Garcia-Martinez, Victor; Koyanagi, Yoshio; Manz, Markus G; Tager, Andrew. Humanized Mice for HIV Research. s.n.: Springer, n/a.

Hässig, Annina Maria; Roos, Malgorzata; Etter, Anne; Bossart, Walter; Müller, Nicolas; Schiesser, Marc; Wüthrich, Rudolf P; Fehr, Thomas (2014). Association of BK viremia with human leukocyte antigen mismatches and acute rejection, but not with type of calcineurin inhibitor. Transplant Infectious Disease, 16(1):44-54.

Conen, Anna; Wang, Qing; Fehr, Jan (2014). Authors reply to the letter to the editor by Carrieri et al. HIV and alcohol - the ongoing debate. Journal of Acquired Immune Deficiency Syndromes, 65(4):e157-8.

Pfisterer, David; Georgi, Anna; Günthard, Huldrych (2014). CME. Akute HIV-Infektion. Praxis, 103(5):247-253.

Landolt, Lea; Kovari, Helen (2014). CME. Erythema migrans. Praxis, 103(25):1491-1498.

Huser, Mélanie C; Meindl-Fridez, Claudine; Zinkernagel, Annelies S (2014). CME. Grampositives toxisches Schocksyndrom. Praxis, 103(22):1293-1301.

Orasch, Christina; Marchetti, Oscar; Garbino, Jorge; Schrenzel, Jacques; Zimmerli, Stefan; Mühlethaler, Konrad; Rossi, Marco; Pfyffer, Gaby; Ruef, Christian; Fehr, Jan; Zbinden, Reinhard; Calandra, Thierry; Bille, Jacques (2014). Candida species distribution and antifungal susceptibility testing according to European Committee on Antimicrobial Susceptibility Testing and new vs. old Clinical and Laboratory Standards Institute clinical breakpoints: a 6-year prospective candidaemia survey from the fungal infection network of Switzerland. Clinical Microbiology and Infection, 20(7):698-705.

Hasse, Barbara; Walker, A Sarah; Fehr, Jan; Furrer, Hansjakob; Hoffmann, Matthias; Battegay, Manuel; Calmy, Alexandra; Fellay, Jacques; Di Benedetto, Caroline; Weber, Rainer; Ledergerber, Bruno (2014). Co-trimoxazole prophylaxis is associated with reduced risk of incident tuberculosis in participants in the Swiss HIV Cohort Study. Antimicrobial Agents and Chemotherapy, 58(4):2363-2368.

Glatz, Martin; Müllegger, Robert R; Maurer, Florian; Fingerle, Volker; Achermann, Yvonne; Wilske, Bettina; Bloemberg, Guido V (2014). Detection of Candidatus Neoehrlichia mikurensis, Borrelia burgdorferi sensu lato genospecies and Anaplasma phagocytophilum in a tick population from Austria. Ticks and Tick-borne Diseases, 5(2):139-144.

Nadal, David; Arlettaz, Romaine; Berger, Christoph (2014). Die vertikale HIV-Infektion kann heute erfolgreich verhütet werden, bleibt aber eine Herausforderung. Therapeutische Umschau. Revue thérapeutique, 71(8):503-508.

Regoes, Roland R; McLaren, Paul J; Battegay, Manuel; Bernasconi, Enos; Calmy, Alexandra; Günthard, Huldrych F; Hoffmann, Matthias; Rauch, Andri; Telenti, Amalio; Fellay, Jacques (2014). Disentangling human tolerance and resistance against HIV. PLoS Biology, 12(9):e1001951.

Abdel-Mohsen, Mohamed; Deng, Xutao; Liegler, Teri; Guatelli, John C; Salama, Mohamed S; Ghanem, Hussam El-Din A; Rauch, Andri; Ledergerber, Bruno; Deeks, Steven G; Günthard, Huldrych F; Wong, Joseph K; Pillai, Satish K (2014). Effects of alpha interferon treatment on intrinsic anti-HIV-1 immunity in vivo. Journal of Virology, 88(1):763-767.

Braun, D l; Rauch, A; Durisch, N; Eberhard, N; Anagnostopoulos, A; Ledergerber, B; Metzner, K J; Boni, J; Weber, R; Fehr, J (2014). Efficacy of lead-in silibinin and subsequent triple therapy in difficult-to-treat HIV/hepatitis C virus-coinfected patients. Neurobehavioral HIV Medicine, 15(10):625-630.

Taveira, Aline; Ponroy, Nicolas; Mueller, Nicolas J; Millard, Anne-Laure (2014). Entry of human cytomegalovirus into porcine endothelial cells depends on both the cellular vascular origin and the viral strain. Xenotransplantation, 21(4):324-340.

Oesch Nemeth, Gabriela; Nemeth, Johannes; Altpeter, Ekkehardt; Ritz, Nicole (2014). Epidemiology of childhood tuberculosis in Switzerland between 1996 and 2011. European Journal of Pediatrics, 173(4):457-462.

Lemmenmeier, E; Kohler, P; Bruderer, T; Goldenberger, D; Kleger, G-R; Schlegel, M (2014). First documented outbreak of KPC-2-producing Klebsiella pneumoniae in Switzerland: infection control measures and clinical management. Infection, 42(3):529-534.

Xiao, Yongling; Abrahamowicz, Michal; Moodie, Erica E M; Weber, Rainer; Young, James (2014). Flexible marginal structural models for estimating the cumulative effect of a time-dependent treatment on the hazard: reassessing the cardiovascular risks of didanosine treatment in the Swiss HIV cohort study. Journal of the American Statistical Association, 109(506):455-464.

Di Giallonardo, Francesca; Töpfer, Armin; Rey, Melanie; Prabhakaran, Sandhya; Duport, Yannick; Leemann, Christine; Schmutz, Stefan; Campbell, Nottania K; Joos, Beda; Lecca, Maria Rita; Patrignani, Andrea; Däumer, Martin; Beisel, Christian; Rusert, Peter; Trkola, Alexandra; Günthard, Huldrych F; Roth, Volker; Beerenwinkel, Niko; Metzner, Karin J (2014). Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations. Nucleic Acids Research, 42(14):e115.

Hernandez, D; Seidl, K; Corvaglia, A-R; Bayer, A S; Xiong, Y Q; Francois, P (2014). Genome Sequences of Sequence Type 45 (ST45) Persistent Methicillin-Resistant Staphylococcus aureus (MRSA) Bacteremia Strain 300-169 and ST45 Resolving MRSA Bacteremia Strain 301-188. Genome Announcements, 2(2):e00174-14.

Toutous Trellu, Laurence; Oertle, Daniel; Itin, Peter; Scheidegger, Claude; Stoeckle, Marcel; Schmid, Patrick; Bernasconi, Enos; Cavassini, Matthias; Boffi El Amari, Emmanuelle; Kahlert, Christian; Vernazza, Pietro; Fehr, Jan; Calmy, Alexandra; Low, Nicola; Martinetti Lucchini, Gladys; Tarr, Philip (2014). Gonorrhoe: neue Empfehlungen zu Diagnostik und Behandlung. Swiss Medical Forum, 14(20):407-409.

Bansal Zweifel, Vineeta; Berger, Christoph; Nadal, David; Grawe, Claudia (2014). HIV und Schwangerschaft. Therapeutische Umschau. Revue thérapeutique, 71(8):498-502.

Schüpbach, Jörg; Berger, Christoph; Böni, Jürg; Speck, Roberto F (2014). HIV-Diagnostik in der Schweiz und ärztlicher Abklärungsgang von HIV-Infizierten. Therapeutische Umschau. Revue thérapeutique, 71(8):451-460.

Bucheli, E; Kralidis, G; Boggian, K; Cusini, A; Garzoni, C; Manuel, O; Meylan, P R A; Mueller, N J; Khanna, N; van Delden, C; Berger, C; Koller, M T; Weisser, M (2014). Impact of enterococcal colonization and infection in solid organ transplantation recipients from the Swiss Transplant Cohort Study. Transplant Infectious Disease, 16(1):26-36.

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Miro, J M; Agueero, F; Duclos-Vallee, J-C; Mueller, N J; Grossi, P; Moreno, A (2014). Infections in solid organ transplant HIV-infected patients. Clinical Microbiology and Infection, 20(s7):119-130.

Grankvist, Anna; Andersson, Per-Ola; Mattsson, Mattias; Sender, Monica; Vaht, Krista; Höper, Linnea; Sakiniene, Egidija; Trysberg, Estelle; Stenson, Martin; Fehr, Jan; Pekova, Sona; Bogdan, Christian; Bloemberg, Guido; Wennerås, Christine (2014). Infections with the tick-borne bacterium "Candidatus Neoehrlichia mikurensis" mimic noninfectious conditions in patients with B cell malignancies or autoimmune diseases. Clinical Infectious Diseases, 58(12):1716-1722.

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González, Raquel; Maldonado, Antonio; Martín, Virginia; Mandomando, Inácio; Fumadó, Victoria; Metzner, Karin J; Sacoor, Charfudin; Fernández, Leónides; Macete, Eusébio; Alonso, Pedro L; Rodríguez, Juan M; Menendez, Clara (2013). Breast milk and gut microbiota in African mothers and infants from an area of high HIV prevalence. PLoS ONE, 8(11):e80299.

Millard, Anne-Laure; Valli, Piero V; Stussi, Georg; Mueller, Nicolas J; Yung, Gisella Puga; Seebach, Jörg D (2013). Brief exercise increases peripheral blood NK cell counts without immediate functional changes, but impairs their responses to ex vivo stimulation. Frontiers in Immunology:4:125.

Mocroft, Amanda; Phillips, Andrew N; Gatell, Jose; Horban, Andrej; Ledergerber, Bruno; Zilmer, Kai; Jevtovic, Djordje; Maltez, Fernando; Podlekareva, Daria; Lundgren, Jens D (2013). CD4 cell count and viral load-specific rates of AIDS, non-AIDS and deaths according to current antiretroviral use. AIDS, 27(6):907-918.

Wolfensberger, Aline; Sax, Hugo; Weber, Rainer; Zbinden, Reinhard; Kuster, Stefan P; Hombach, Michael (2013). Change of antibiotic susceptibility testing guidelines from CLSI to EUCAST: Influence on cumulative hospital antibiograms. PLoS ONE, 8(11):e79130.

Rohrbach, Janine; Stickel, Felix; Schmid, Patrick; Thormann, Wolfgang; Kovari, Helen; Scherrer, Alexandra; Günthard, Huldrych F; Vuichard, Danielle; Cavassini, Matthias; Ambrosioni, Juan; Bernasconi, Enos; Furrer, Hansjakob; Rauch, Andri (2013). Changes in biomarkers of liver disease during successful combination antiretroviral therapy in HIV/HCV-coinfected individuals. Antiviral Therapy, 19(2):149-159.

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Maurer, Florian P; Keller, Peter M; Beuret, Christian; Joha, Cornelia; Achermann, Yvonne; Gubler, Jaques; Bircher, Daniela; Karrer, Urs; Fehr, Jan; Zimmerli, Lukas; Bloemberg, Guido V (2013). Close geographic association of human neoehrlichiosis and tick populations carrying Candidatus Neoehrlichia mikurensis in Eastern Switzerland. Journal of clinical microbiology, 51(1):169-176.

Taylor, Ninon; Grabmeier-Pfistershammer, Katharina; Egle, Alexander; Greil, Richard; Rieger, Armin; Ledergerber, Bruno; Oberkofler, Hannes (2013). Cobas Ampliprep/Cobas TaqMan HIV-1 v2.0 Assay: Consequences at the Cohort Level. PLoS ONE, 8(8):e74024.

Gallant, Joel E; Koenig, Ellen; Andrade-Villanueva, Jaime; Chetchotisakd, Ploenchan; DeJesus, Edwin; Antunes, Francisco; Arastéh, Keikawus; Moyle, Graeme; Rizzardini, Giuliano; Fehr, Jan; Liu, Yapei; Zhong, Lijie; Callebaut, Christian; Szwarcberg, Javier; Rhee, Martin S; Cheng, Andrew K (2013). Cobicistat versus ritonavir as a pharmacoenhancer of atazanavir plus emtricitabine/tenofovir disoproxil fumarate in treatment-naive HIV type 1-infected patients: week 48 results. Journal of Infectious Diseases, 208(1):32-39.

Uchiyama, Satoshi; Andreoni, Federica; Zürcher, Claudia; Schilcher, Katrin; Ender, Miriam; Madon, Jerzy; Matt, Ulrich; Ghosh, Partho; Nizet, Victor; Schuepbach, Reto A; Zinkernagel, Annelies S (2013). Coiled-coil irregularities of the M1 protein structure promote M1-fibrinogen interaction and influence group A Streptococcus host cell interactions and virulence. Journal of Molecular Medicine, 91(7):861-869.

Rotger, Margalida; Glass, Tracy R; Junier, Thomas; Lundgren, Jens; Neaton, James D; Poloni, Estella S; van 't Wout, Angélique B; Lubomirov, Rubin; Colombo, Sara; Martinez, Raquel; Rauch, Andri; Günthard, Huldrych F; Neuhaus, Jacqueline; Wentworth, Deborah; van Manen, Danielle; Gras, Luuk A; Schuitemaker, Hanneke; Albini, Laura; Torti, Carlo; Jacobson, Lisa P; Li, Xiuhong; Kingsley, Lawrence A; Carli, Federica; Guaraldi, Giovanni; Ford, Emily S; Sereti, Irini; Hadigan, Colleen; Martinez, Esteban; Arnedo, Mireia; Egaña-Gorroño, Lander; Gatell, Jose M; Law, Matthew; Bendall, Courtney; Petoumenos, Kathy; Rockstroh, Jürgen; Wasmuth, Jan-Christian; Kabamba, Kabeya; Delforge, Marc; De Wit, Stephane; Berger, Florian; Mauss, Stefan; de Paz Sierra, Mariana; Losso, Marcelo; Belloso, Waldo H; Leyes, Maria; Campins, Antoni; Mondi, Annalisa; De Luca, Andrea; Bernardino, Ignacio; Barriuso-Iglesias, Mónica; Torrecilla-Rodriguez, Ana; Gonzalez-Garcia, Juan; Arribas, José R; Fanti, Iuri; Gel, Silvia; Puig, Jordi; Negredo, Eugenia; Gutierrez, Mar; Domingo, Pere; Fischer, Julia; Fätkenheuer, Gerd; Alonso-Villaverde, Carlos; Macken, Alan; Woo, James; McGinty, Tara; Mallon, Patrick; Mangili, Alexandra; Skinner, Sally; Wanke, Christine A; Reiss, Peter; Weber, Rainer; Bucher, Heiner C; Fellay, Jacques; Telenti, Amalio; Tarr, Philip E (2013). Contribution of genetic background, traditional risk factors, and HIV-related factors to coronary artery disease events in HIV-positive persons. Clinical Infectious Diseases, 57(1):112-121.

Kovari, Helen; de Melo Oliveira, Maria Dg; Hauser, Paula; Läuchli, Severin; Meyer, Jürg; Weber, Rainer; Zbinden, Reinhard (2013). Decreased susceptibility of Neisseria gonorrhoeae isolates from Switzerland to Cefixime and Ceftriaxone: antimicrobial susceptibility data from 1990 and 2000 to 2012. BMC Infectious Diseases, 13:603.

Weber, R; Ruppik, M; Rickenbach, M; Spoerri, A; Furrer, H; Battegay, M; Cavassini, M; Calmy, A; Bernasconi, E; Schmid, P; Flepp, M; Kowalska, J; Ledergerber, B; Schmid, P; Schultze, D; Schöni-Affolter, F; Schüpbach, J; Speck, R; Taffé, P; Tarr, P; Telenti, A; Trkola, A; Vernazza, P; Weber, R; Yerly, S (2013). Decreasing mortality and changing patterns of causes of death in the Swiss HIV Cohort Study. HIV Medicine, 14(4):195-207.

Koller, Michael T; van Delden, Christian; Müller, Nicolas J; Baumann, Philippe; Lovis, Christian; Marti, Hans-Peter; Fehr, Thomas; Binet, Isabelle; De Geest, Sabina; Bucher, Heiner C; Meylan, Pascal; Pascual, Manuel; Steiger, Jürg (2013). Design and methodology of the Swiss Transplant Cohort Study (STCS): a comprehensive prospective nationwide long-term follow-up cohort. European Journal of Epidemiology, 28(4):347-355.

Vratskikh, Oksana; Stiasny, Karin; Zlatkovic, Jürgen; Tsouchnikas, Georgios; Jarmer, Johanna; Karrer, Urs; Roggendorf, Michael; Roggendorf, Hedwig; Allwinn, Regina; Heinz, Franz X (2013). Dissection of antibody specificities induced by yellow fever vaccination. PLoS Pathogens, 9(6):e1003458.

Tchang, Vincent Sam Yong; Mekker, Andrea; Siegmund, Kerstin; Karrer, Urs; Pieters, Jean (2013). Diverging role for coronin 1 in antiviral CD4(+) and CD8(+) T cell responses. Molecular Immunology, 56(4):683-692.

Cosgrove, Cormac; Ussher, James E; Rauch, Andri; Gärtner, Kathleen; Kurioka, Ayako; Hühn, Michael H; Adelmann, Krista; Kang, Yu-Hoi; Fergusson, Joannah R; Simmonds, Peter; Goulder, Philip; Hansen, Ted H; Fox, Julie; Günthard, Huldrych F; Khanna, Nina; Powrie, Fiona; Steel, Alan; Gazzard, Brian; Phillips, Rodney E; Frater, John; Uhlig, Holm; Klenerman, Paul (2013). Early and nonreversible decrease of CD161++ /MAIT cells in HIV infection. Blood, 121(6):951-961.

Bernasconi, Michele; Ueda, Seigo; Krukowski, Patricia; Bornhauser, Beat C; Ladell, Kristin; Dorner, Marcus; Sigrist, Juerg A; Campidelli, Cristina; Aslandogmus, Roberta; Alessi, Davide; Berger, Christoph; Pileri, Stefano A; Speck, Roberto F; Nadal, David (2013). Early gene expression changes by Epstein-Barr virus infection of B-cells indicate CDKs and survivin as therapeutic targets for post-transplant lymphoproliferative diseases. International Journal of Cancer, 133(10):2341-2350.

Anagnostopoulos, Alexia; Rotger, Margalida; Aouri, Manel; Kuster, Stefan P; Telenti, Amalio; Décosterd, Laurent A; Günthard, Huldrych F (2013). Efavirenz intoxication due to a new CYP2B6 constellation. Antiviral Therapy, 18(5):735-738.

Brennan, Daniel C; Aguado, José M; Potena, Luciano; Jardine, Alan G; Legendre, Christophe; Säemann, Marcus D; Mueller, Nicolas J; Merville, Pierre; Emery, Vincent; Nashan, Björn (2013). Effect of maintenance immunosuppressive drugs on virus pathobiology: evidence and potential mechanisms. Reviews in Medical Virology, 23(2):97-125.

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Preiswerk, B; Rudiger, A; Fehr, J; Corti, N (2013). Experience with daptomycin daily dosing in ICU patients undergoing continuous renal replacement therapy. Infection, 41(2):553-557.

Achermann, Y; Eigenmann, K; Ledergerber, B; Derksen, L; Rafeiner, P; Clauss, M; Nüesch, R; Zellweger, C; Vogt, M; Zimmerli, W (2013). Factors associated with rifampin resistance in staphylococcal periprosthetic joint infections (PJI): a matched case–control study. Infection, 41(2):431-437.

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Cusini, Alexia; Ledergerber, Bruno; Widmer, Nicolas; Günthard, Huldrych F (2013). Response to Calcagno comment on "Higher CNS penetration-effectiveness of long-term combination antiretroviral therapy is associated with better HIV-1 viral suppression in cerebrospinal fluid". Journal of Acquired Immune Deficiency Syndromes, 64(2):e14-e15.

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Veloso, Tiago Rafael; Zbinden, Andrea; Andreoni, Federica; Giddey, Marlyse; Vouillamoz, Jacques; Moreillon, Philippe; Zinkernagel, Annelies Sophie; Entenza, José Manuel (2013). Streptococcus tigurinus is highly virulent in a rat model of experimental endocarditis. International Journal of Medical Microbiology : IJMM, 303(8):498-504.

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Wang, Qing; Young, Jim; Bernasconi, Enos; Cavassini, Matthias; Vernazza, Pietro; Hirschel, Bernard; Weber, Rainer; Furrer, Hansjakob; Stoeckle, Marcel; Bucher, Heiner C; Fux, Christoph (2013). The prevalence of erectile dysfunction and its association with antiretroviral therapy in HIV-infected men: the Swiss HIV Cohort Study. Antiviral Therapy, 18(3):337-344.

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Nemeth, Johannes; Rumetshofer, Rudolf; Winkler, Heide-Maria; Burghuber, Otto C; Müller, Catharina; Winkler, Stefan (2012). Active tuberculosis is characterized by an antigen specific and strictly localized expansion of effector T cells at the site of infection. European Journal of Immunology, 42(11):2844-2850.

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Longtin, Yves; Farquet, Natacha; Gayet-Ageron, Angèle; Sax, Hugo; Pittet, Didier (2012). Caregivers' Perceptions of Patients as Reminders to Improve Hand Hygiene. Archives of Internal Medicine, 172(19):1516-1517.

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Colombo, Carlo; Senn, Gabriela; Bürgel, Anne; Ruef, Christian (2012). Clearance of an epidemic clone of methicillin-resistant Staphylococcus aureus in a drug-use network: A follow-up study in Switzerland. Scandinavian Journal of Infectious Diseases, 44(9):650-655.

Arenas-Pinto, Alejandro; Weller, Ian; Ekong, Rosemary; Grant, Alison; Karstaedt, Alan; Reiss, Peter; Telisinghe, Lilanganee; Weber, Rainer; Bolhaar, Martine; Bradman, Neil; Ingram, Catherine (2012). Common inherited mitochondrial DNA mutations and nucleoside reverse transcriptase inhibitor-induced severe hyperlactataemia in HIV-infected adults: an exploratory study. Antiviral Therapy, 17(2):275-82.

Uchiyama, Satoshi; Andreoni, Federica; Schuepbach, Reto A; Nizet, Victor; Zinkernagel, Annelies S (2012). DNase Sda1 allows invasive M1T1 Group A Streptococcus to prevent TLR9-dependent recognition. PLoS Pathogens, 8(6):e1002736.

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Birrenbach, Tanja; Bertschy, Sonja; Aebersold, Franziska; Mueller, Nicolas J; Achermann, Yvonne; Muehlethaler, Konrad; Zimmerli, Stefan (2012). Emergence of Blastoschizomyces capitatus yeast infections, Central Europe. Emerging Infectious Diseases, 18(1):98-101.

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Zuercher, Emilie; Butticaz, Christophe; Wyniger, Josiane; Martinez, Raquel; Battegay, Manuel; Boffi El Amari, Emmanuelle; Dang, Thanh; Egger, Jean-François; Fehr, Jan; Mueller-Garamvögyi, Esther; Parini, Andrea; Schaefer, Stephan C; Schoeni-Affolter, Franziska; Thurnheer, Christine; Tinguely, Marianne; Telenti, Amalio; Rothenberger, Sylvia (2012). Genetic diversity of EBV-encoded LMP1 in the Swiss HIV Cohort Study and implication for NF-Κb activation. PLoS ONE, 7(2):e32168.

Stern, M; Czaja, K; Rauch, A; Rickenbach, M; Günthard, H F; Battegay, M; Fellay, J; Hirschel, B; Hess, C (2012). HLA-Bw4 identifies a population of HIV-infected patients with an increased capacity to control viral replication after structured treatment interruption. HIV Medicine, 13(10):589-595.

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Mekker, Andrea; Tchang, Vincent S; Haeberli, Lea; Oxenius, Annette; Trkola, Alexandra; Karrer, Urs (2012). Immune senescence: relative contributions of age and cytomegalovirus infection. PLoS Pathogens, 8(8):e1002850.

Coleman, B L; Kuster, S P; Gubbay, J; Scheifele, D; Li, Y; Low, D; Crowcroft, N; Mazzulli, T; Shi, L; Halperin, S A; Law, B; McGeer, A (2012). Immunogenicity of a half-dose of adjuvanted 2009 pandemic H1N1 influenza vaccine in adults: a prospective cohort study. European Journal of Clinical Microbiology and Infectious Diseases, 31(4):591-597.

Zinkernagel, A S; Hruz, P; Uchiyama, S; von Köckritz-Blickwede, M; Schuepbach, R A; Hayashi, T; Carson, D A; Nizet, V (2012). Importance of toll-like receptor 9 in host defense against M1T1 Group A Streptococcus infections. Journal of Innate Immunity, 4(2):213-218.

von Wyl, V; Yerly, S; Böni, J; Shah, C; Cellerai, C; Klimkait, T; Battegay, M; Bernasconi, E; Cavassini, M; Furrer, H; Hirschel, B; Vernazza, P L; Ledergerber, B; Günthard, H F (2012). Incidence of HIV-1 drug resistance among antiretroviral treatment-naive individuals starting modern therapy combinations. Clinical Infectious Diseases, 54(1):131-140.

Müller, N J; Fishman, J A (2012). Infections in the liver transplant recipient. In: Clavien, P A; Trotter, J F; Müllhaupt, B. Medical care of the liver transplant patient. Chichester, UK: Wiley-Blackwell, 380-388.

Leventhal, Gabriel E; Kouyos, Roger; Stadler, Tanja; von Wyl, Viktor; Yerly, Sabine; Böni, Jürg; Cellerai, Cristina; Klimkait, Thomas; Günthard, Huldrych F; Bonhoeffer, Sebastian (2012). Inferring epidemic contact structure from phylogenetic trees. PLoS Computational Biology, 8(3):e1002413.

Duprez, Daniel A; Neuhaus, Jacqueline; Kuller, Lewis H; Tracy, Russell; Belloso, Waldo; De Wit, Stephane; Drummond, Fraser; Lane, H Clifford; Ledergerber, Bruno; Lundgren, Jens; Nixon, Daniel; Paton, Nicholas I; Prineas, Ronald J; Neaton, James D (2012). Inflammation, coagulation and cardiovascular disease in HIV-infected individuals. PLoS ONE, 7(9):e44454.

Herbeck, J T; Müller, V; Maust, B S; Ledergerber, B; Torti, C; Di Giambenedetto, S; Gras, L; Günthard, H F; Jacobson, L P; Mullins, J I; Gottlieb, G S (2012). Is the virulence of HIV changing? A meta-analysis of trends in prognostic markers of HIV disease progression and transmission. AIDS, 26(2):193-205.

Krones, T; Rüegg, C A; Günthard, H F; Rid (Schulz-Baldes), Annette; Wild, V (2012). Kommentar I zum Fall: „Heimlicher Transfer von HIV-Medikamenten nach Afrika“. Ethik in der Medizin, 24(1):59-61.

Bansal, V; Altermatt, S; Nadal, D; Berger, C (2012). Lack of benefit of preoperative antimicrobial prophylaxis in children with acute appendicitis: a prospective cohort study. Infection, 40(6):635-641.

Dobrick, Nadine; Müller, Nicolas; Franzen, Daniel (2012). Legionärskrankheit (Legionellen-Pneumonie). Praxis, 101(23):1459-1467.

Scherrer, Alexandra U; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Furrer, Hansjakob; Calmy, Alexandra; Cavassini, Matthias; Elzi, Luigia; Vernazza, Pietro L; Bernasconi, Enos; Ledergerber, Bruno; Günthard, Huldrych F (2012). Long-Lasting Protection of Activity of Nucleoside Reverse Transcriptase Inhibitors and Protease Inhibitors (PIs) by Boosted PI Containing Regimens. PLoS ONE, 7(11):e50307.

Kowalska, J D; Reekie, J; Mocroft, A; Reiss, P; Ledergerber, B; Gatell, J; D'Arminio Monforte, A; Phillips, A; Lundgren, J D; Kirk, O (2012). Long-term exposure to combination antiretroviral therapy and risk of death from specific causes: no evidence for any previously unidentified increased risk due to antiretroviral therapy. AIDS, 26(3):315-323.

Vrouenraets, S M E; Wit, F W N M; Garcia, E Fernandez; Huber, M; Brinkman, K; Moyle, G; Domingo, P; Tarr, P E; Podzamczer, D; Ristola, M; Gatell, J M; Livrozet, J M; Furrer, H; Reiss, P (2012). Longer prior exposure to zidovudine/lamivudine-containing combination antiretroviral therapy, age, and male gender are each associated with reduced subcutaneous adipose tissue. HIV Clinical Trials, 13(2):103-110.

Staehelin, C; Keiser, O; Calmy, A; Weber, R; Elzi, L; Cavassini, M; Schmid, P; Bernasconi, E; Furrer, H (2012). Longer term clinical and virological outcome of Sub-Saharan African participants on antiretroviral treatment in the Swiss HIV Cohort Study. Journal of Acquired Immune Deficiency Syndromes, 59(1):79-85.

Clifford, G M; Lise, M; Franceschi, S; Egger, M; Bouchardy, C; Korol, D; Levi, F; Ess, S; Jundt, G; Wandeler, G; Fehr, J; Schmid, P; Battegay, M; Bernasconi, E; Cavassini, M; Calmy, A; Keiser, O; Schöni-Affolter, F (2012). Lung cancer in the Swiss HIV Cohort Study: role of smoking, immunodeficiency and pulmonary infection. British Journal of Cancer, 106(3):447-452.

Hugelshofer, M; Achermann, Y; Kovari, H; Dent, W; Hombach, M; Bloemberg, G (2012). Meningoencephalitis with Subdural Empyema Caused by Toxigenic Clostridium perfringens Type A. Journal of Clinical Microbiology, 50(10):3409-3411.

Scherrer, Alexandra U; Ledergerber, Bruno; von Wyl, Viktor; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Cellerai, Cristina; Furrer, Hansjakob; Calmy, Alexandra; Cavassini, Matthias; Elzi, Luigia; Vernazza, Pietro L; Bernasconi, Enos; Günthard, Huldrych F (2012). Minor protease inhibitor mutations at baseline do not increase the risk for a virological failure in HIV-1 subtype B infected patients. PLoS ONE, 7(6):e37983.

Nischang, Marc; Gers-Huber, Gustavo; Audigé, Annette; Akkina, Ramesh; Speck, Robert F (2012). Modeling HIV infection and therapies in humanized mice. Swiss Medical Weekly, 142:w13618.

Lederer, H; Achermann, Y; Tinguely, M; Stenner, F; Fehr, J (2012). Multicentric Castleman's disease as a cause for unclear febrile episodes in a 55-year-old HIV-infected man. Infection, 40(2):203-205.

Nemeth, J; Ledergerber, B; Preiswerk, B; Nobile, A; Karrer, S; Ruef, C; Kuster, S P (2012). Multidrug-resistant bacteria in travellers hospitalized abroad: prevalence, characteristics, and influence on clinical outcome. Journal of Hospital Infection, 82(4):254-259.

Fenner, L; Gagneux, S; Helbling, P; Battegay, M; Rieder, H L; Pfyffer, G E; Zwahlen, M; Furrer, H; Siegrist, H H; Fehr, J; Dolina, M; Calmy, A; Stucki, D; Jaton, K; Janssens, J P; Stalder, J M; Bodmer, T; Ninet, B; Böttger, E C; Egger, M (2012). Mycobacterium tuberculosis transmission in a country with low tuberculosis incidence: Role of immigration and HIV infection. Journal of Clinical Microbiology, 50(2):388-395.

Petrausch, Ulf; Frauenfelder, Thomas; Mueller, Nicolas J; Arn, Kornelius; Stussi, Georg; Schanz, Urs (2012). Optimised radiological diagnosis of hepatic fungal infection during the treatment of leukemia. Mycoses, 55(5):447-453.

Sassi, Monica; Ripamonti, Chiara; Mueller, Nicolas J; Yazaki, Hirohisa; Kutty, Geetha; Ma, Liang; Huber, Charles; Gogineni, Emile; Oka, Shinichi; Goto, Norihiko; Fehr, Thomas; Gianella, Sara; Konrad, Regina; Sing, Andreas; Kovacs, Joseph A (2012). Outbreaks of Pneumocystis pneumonia in 2 renal transplant centers linked to a single strain of Pneumocystis: implications for transmission and virulence. Clinical Infectious Diseases, 54(10):1437-1444.

Huber, M; Ledergerber, B; Sauter, R; Young, J; Fehr, J; Cusini, A; Battegay, M; Calmy, A; Orasch, C; Nicca, D; Bernasconi, E; Jaccard, R; Held, L; Weber, R (2012). Outcome of smoking cessation counselling of HIV-positive persons by HIV care physicians. HIV medicine, 13(7):387-397.

Keiser, O; Spycher, B; Rauch, A; Calmy, A; Cavassini, M; Glass, T R; Nicca, D; Ledergerber, B; Egger, M (2012). Outcomes of antiretroviral therapy in the Swiss HIV Cohort Study: Latent class analysis. AIDS and Behavior, 16(2):245-255.

Thierfelder, C; Weber, R; Elzi, L; Furrer, H; Cavassini, M; Calmy, A; Bernasconi, E; Gutmann, C; Ledergerber, B (2012). Participation, characteristics and retention rates of HIV-positive immigrants in the Swiss HIV Cohort Study. HIV Medicine, 13(2):118-126.

Simmons, Ruth; Sharp, Colin; McClure, C Patrick; Rohrbach, Janine; Kovari, Helen; Frangou, Eleni; Simmonds, Peter; Irving, Will; Rauch, Andri; Bowness, Paul; Klenerman, Paul (2012). Parvovirus 4 infection and clinical outcome in high-risk populations. Journal of Infectious Diseases, 205(12):1816-1820.

Nemeth, Johannes; Winkler, Heide-Maria; Zwick, Ralph H; Müller, Catharina; Rumetshofer, Rudolf; Boeck, Lucas; Burghuber, Otto C; Winkler, Stefan (2012). Peripheral T cell cytokine responses for diagnosis of active tuberculosis. PLoS ONE, 7(4):e35290.

Scherrer, A U; von Wyl, V; Götte, M; Klimkait, T; Cellerai, C; Yerly, S; Böni, J; Held, L; Ledergerber, B; Günthard, H F (2012). Polymorphic mutations associated with the emergence of the multi-nucleoside/tide resistance mutations 69 insertion and Q151M. Journal of Acquired Immune Deficiency Syndromes, 59(2):105-112.

Arab-Alameddine, Mona; Fayet-Mello, Aurélie; Lubomirov, Rubin; Neely, Michael; di Iulio, Julia; Owen, Andrew; Boffito, Marta; Cavassini, Matthias; Günthard, Huldrych F; Rentsch, Katharina; Buclin, Thierry; Aouri, Manel; Telenti, Amalio; Decosterd, Laurent Arthur; Rotger, Margalida; Csajka, Chantal (2012). Population pharmacokinetic analysis and pharmacogenetics of raltegravir in HIV-positive and healthy individuals. Antimicrobial agents and chemotherapy, 56(6):2959-2966.

Petoumenos, Kathy; Worm, Signe W; Fontas, Eric; Weber, Rainer; De Wit, Stephane; Bruyand, Mathias; Reiss, Peter; El-Sadr, Wafaa; Monforte, Antonella D'Arminio; Friis-Møller, Nina; Lundgren, Jens D; Law, Matthew G (2012). Predicting the short-term risk of diabetes in HIV-positive patients: the Data Collection on Adverse Events of Anti-HIV Drugs (D:A:D) study. Journal of the International Aids Society, 15(2):17426.

Braun, J; Held, L; Ledergerber, B (2012). Predictive cross-validation for the choice of linear mixed-effects models with application to data from the Swiss HIV Cohort Study. Biometrics, 68(1):53-61.

Hunziker, Thomas; Berger, Christoph; Staubli, Georg; Tschopp, Alois; Weber, Rainer; Nadal, David; Hatz, Christoph; Schlagenhauf, Patricia (2012). Profile of travel-associated illness in children, Zürich, Switzerland. Journal of Travel Medicine, 19(3):158-162.

Hohlfeld, Sabine K; Günthard, Huldrych F; Zeitz, Jonas; Locher, Pascal; Bachli, Esther (2012). Progressive multi-focal leukoencephalopathy as a rare lethal complication in untreated sarcoidosis. BMJ Case Reports, 2012:online.

Stiasny, K; Aberle, J H; Chmelik, V; Karrer, U; Holzmann, H; Heinz, F X (2012). Quantitative determination of IgM antibodies reduces the pitfalls in the serodiagnosis of tick-borne encephalitis. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology, 54(2):115-120.

Prabhakaran, S; Boehm, A; Metzner, K J; Roth, V (2012). Recovering networks from distance data. Journal of Machine Learning Research, 25:349-364.

Berger, Christoph; Boggian, Katia; Cusini, Alexia; van Delden, Christian; Garzoni, Christian; Hirsch, Hans H; Khanna, Nina; Koller, Michael; Manuel, Oriol; Meylan, Pascal; Nadal, David; Weisser, Maja; Mueller, Nicolas J (2012). Relevance of cohort studies for the study of transplant infectious diseases. Current Opinion in Organ Transplantation, 17(6):581-585.

Young, Jim; Schäfer, Juliane; Fux, Christoph A; Furrer, Hansjakob; Bernasconi, Enos; Vernazza, Pietro; Calmy, Alexandra; Cavassini, Matthias; Weber, Rainer; Battegay, Manuel; Bucher, Heiner C (2012). Renal function in patients with HIV starting therapy with tenofovir and either efavirenz, lopinavir or atazanavir. AIDS, 26(5):567-575.

Nashan, Björn; Gaston, Robert; Emery, Vincent; Säemann, Marcus D; Mueller, Nicolas J; Couzi, Lionel; Dantal, Jacques; Shihab, Fuad; Mulgaonkar, Shamkant; Seun Kim, Yu; Brennan, Daniel C (2012). Review of cytomegalovirus infection findings with mammalian target of rapamycin inhibitor-based immunosuppressive therapy in de novo renal transplant recipients. Transplantation, 93(11):1075-1085.

Pillai, Satish K; Abdel-Mohsen, Mohamed; Guatelli, John; Skasko, Mark; Monto, Alexander; Fujimoto, Katsuya; Yukl, Steven; Greene, Warner C; Kovari, Helen; Rauch, Andri; Fellay, Jacques; Battegay, Manuel; Hirschel, Bernard; Witteck, Andrea; Bernasconi, Enos; Ledergerber, Bruno; Günthard, Huldrych F; Wong, Joseph K (2012). Role of retroviral restriction factors in the interferon-α-mediated suppression of HIV-1 in vivo. Proceedings of the National Academy of Sciences of the United States of America, 109(8):3035-3040.

Sax, Hugo (2012). Seeing the system inside-out. Reflections, 12(3):12-18.

Knaute, Damaris Fröhlich; Graf, Nicole; Lautenschlager, Stephan; Weber, Rainer; Bosshard, Philipp P (2012). Serological Response to Treatment of Syphilis According to Disease Stage and HIV Status. Clinical Infectious Diseases, 55(12):1615-1622.

Kocher, C; Segerer, S; Schleich, A; Caduff, R; Wyler, L G; Müller, V; Beck, B; Blum, J; Kamarachev, J; Mueller, N J (2012). Skin lesions, malaise, and heart failure in a renal transplant recipient. Transplant Infectious Disease, 14(4):391-397.

Bucher, Heiner C; Richter, Werner; Glass, Tracy R; Magenta, Lorenzo; Wang, Qing; Cavassini, Matthias; Vernazza, Pietro; Hirschel, Bernard; Weber, Rainer; Furrer, Hansjakob; Battegay, Manuel; Bernasconi, Enos (2012). Small dense lipoproteins, apolipoprotein B, and risk of coronary events in HIV-infected patients on antiretroviral therapy: the Swiss HIV Cohort Study. Journal of Acquired Immune Deficiency Syndromes, 60(2):135-142.

Zbinden, Andrea; Mueller, Nicolas J; Tarr, Philip E; Spröer, Cathrin; Keller, Peter M; Bloemberg, Guido V (2012). Streptococcus tigurinus sp. nov., isolated from blood of patients with endocarditis, meningitis and spondylodiscitis. International Journal of Systematic and Evolutionary Microbiology, 62(Pt 12):2941-2945.

Zbinden, Andrea; Mueller, Nicolas J; Tarr, Philip E; Eich, Gerhard; Schulthess, Bettina; Bahlmann, Anna S; Keller, Peter M; Bloemberg, Guido V (2012). Streptococcus tigurinus, a novel member of the Streptococcus mitis group, causes invasive infections. Journal of Clinical Microbiology, 50(9):2969-2973.

Althaus, Claudia F; Vongrad, Valentina; Niederöst, Barbara; Joos, Beda; Di Giallonardo, Francesca; Rieder, Philip; Pavlovic, Jovan; Trkola, Alexandra; Günthard, Huldrych F; Metzner, Karin J; Fischer, Marek (2012). Tailored enrichment strategy detects low abundant small noncoding RNAs in HIV-1 infected cells. Retrovirology, 9:27.

Murray, M; Hogg, R S; Lima, V D; May, M T; Moore, D M; Abgrall, S; Bruyand, M; D'Arminio Monforte, A; Tural, C; Gill, M J; Harris, R J; Reiss, P; Justice, A; Kirk, O; Saag, M; Smith, C J; Weber, R; Rockstroh, J; Khaykin, P; Sterne, J A C (2012). The effect of injecting drug use history on disease progression and death among HIV-positive individuals initiating combination antiretroviral therapy: collaborative cohort analysis. HIV Medicine, 13(2):89-97.

Cozzi-Lepri, A; Paredes, R; Phillips, A N; Clotet, B; Kjaer, J; Von Wyl, V; Kronborg, G; Castagna, A; Bogner, J R; Lundgren, J D (2012). The rate of accumulation of nonnucleoside reverse transcriptase inhibitor (NNRTI) resistance in patients kept on a virologically failing regimen containing an NNRTI. HIV Medicine, 13(1):62-72.

Spormann, Christoph; Achermann, Yvonne; Simmen, Beat R; Schwyzer, Hans-Kaspar; Vogt, Markus; Goldhahn, Jörg; Kolling, Christoph (2012). Treatment strategies for periprosthetic infections after primary elbow arthroplasty. Journal of Shoulder and Elbow Surgery, 21(8):992-1000.

Castagliola, Dominique; Ledergerber, Bruno; Torti, Carlo; van Sighem, Ard; Podzamczer, Daniel; Mocroft, Amanda; Dorrucci, Maria; Masquelier, Bernard; de Luca, Andrea; Jansen, Klaus; De Wit, Stephane; Obel, Niels; Fätkenheuer, Gerd; Touloumi, Giota; Mussini, Cristina; Castagna, Antonella; Stephan, Cristoph; Garcia, Frederico; Zangerle, Robert; Duval, Xavier; Pérez-Hoyos, Santiago; Meyer, Laurence; Ghosn, Jade; Fabre-Colin, Céline; Kjaer, Jesper; Chene, Genevieve; Fabre-Colin, Céline; Kjaer, Jesper; Grarup, Jesper; Costagliola, Dominque; Lodwick, Rebecca; Ledergerber, Bruno; Phillips, Andrew (2012). Trends in virological and clinical outcomes in individuals with HIV-1 infection and virological failure of drugs from three antiretroviral drug classes: a cohort study. The Lancet infectious diseases, 12(2):119-127.

Fenner, Lukas; Gagneux, Sebastien; Janssens, Jean-Paul; Fehr, Jan; Cavassini, Matthias; Hoffmann, Matthias; Bernasconi, Enos; Schrenzel, Jacques; Bodmer, Thomas; Böttger, Erik C; Helbling, Peter; Egger, Matthias (2012). Tuberculosis in HIV-negative and HIV-infected patients in a low-incidence country: clinical characteristics and treatment outcomes. PLoS ONE, 7(3):e34186.

Taylor, N; Grabmeier-Pfistershammer, K; Oberkofler, H; Egle, A; Rieger, A; Ledergerber, B (2012). Upgraded Cobas TaqMan version 2: hidden consequences at cohort level. Journal of the International Aids Society, 15(6):18207.

Thierfelder, C; Keller, P M; Kocher, C; Gaudenz, R; Hombach, M; Bloemberg, G V; Ruef, C (2012). Vancomycin-resistant Enterococcus. Swiss Medical Weekly, 142(142):0.

Stenzinger, Albrecht; Nemeth, Johannes; Klauschen, Frederick; Schewe, Christiane; Ladhoff, Axel-Michael; Muckenhuber, Alexander; Schürmann, Mariana; Schürmann, Dirk; Weichert, Wilko (2012). Visceral leishmaniasis in a patient with AIDS: early pathological diagnosis using conventional histology, PCR and electron microscopy is the key for adequate treatment. Virchows Archiv, 460(3):357-60.

Henn, Matthew R; Boutwell, Christian L; Charlebois, Patrick; Lennon, Niall J; Power, Karen A; Macalalad, Alexander R; Berlin, Aaron M; Malboeuf, Christine M; Ryan, Elizabeth M; Gnerre, Sante; Zody, Michael C; Erlich, Rachel L; Green, Lisa M; Berical, Andrew; Wang, Yaoyu; Casali, Monica; Streeck, Hendrik; Bloom, Allyson K; Dudek, Tim; Tully, Damien; Newman, Ruchi; Axten, Karen L; Gladden, Adrianne D; Battis, Laura; Kemper, Michael; Zeng, Qiandong; Shea, Terrance P; Gujja, Sharvari; Zedlack, Carmen; Gasser, Olivier; Brander, Christian; Hess, Christoph; Günthard, Huldrych F; Brumme, Zabrina L; Brumme, Chanson J; Bazner, Suzane; Rychert, Jenna; Tinsley, Jake P; Mayer, Ken H; Rosenberg, Eric; Pereyra, Florencia; Levin, Joshua Z; Young, Sarah K; Jessen, Heiko; Altfeld, Marcus; Birren, Bruce W; Walker, Bruce D; Allen, Todd M (2012). Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection. PLoS Pathogens, 8(3):e1002529.

Johnson, V A; Calvez, V; Gunthard, H F; Paredes, R; Pillay, D; Shafer, R; Wensing, A M; Richman, D D (2011). 2011 update of the drug resistance mutations in HIV-1. Topics in Antiviral Medicine, 19(4):156-164.

Kocher, C; Weber, R; Friedl, A (2011). A case study of female genital tuberculosis in a Western European setting. Infection, 39(1):59-63.

Wandeler, G; Keiser, O; Hirschel, B; Günthard, H F; Bernasconi, E; Battegay, M; Clerc, O; Vernazza, P L; Furrer, H (2011). A comparison of initial antiretroviral therapy in the Swiss HIV Cohort Study and the recommendations of the International AIDS Society-USA. PLoS ONE, 6(12):e27903.

Reekie, J; Reiss, P; Ledergerber, B; Sedlacek, D; Parczewski, M; Gatell, J; Katlama, C; Fätkenheuer, G; Lundgren, J D; Mocroft, A (2011). A comparison of the long-term durability of nevirapine, efavirenz and lopinavir in routine clinical practice in Europe: a EuroSIDA study. HIV Medicine, 12(5):259-268.

Kowalska, J D; Mocroft, A; Ledergerber, B; Florence, E; Ristola, M; Begovac, J; Sambatakou, H; Pedersen, C; Lundgren, J D; Kirk, O (2011). A standardized algorithm for determining the underlying cause of death in HIV infection as AIDS or non-AIDS related: results from the EuroSIDA study. HIV Clinical Trials, 12(2):109-117.

Huelsmann, P M; Hofmann, A D; Knoepfel, S A; Popp, J; Rauch, P; Di Giallonardo, F; Danke, C; Gueckel, E; Schambach, A; Wolff, H; Metzner, K J; Berens, C (2011). A suicide gene approach using the human pro-apoptotic protein tBid inhibits HIV-1 replication. BMC Biotechnology, 11:4.

Marzolini, C; Back, D; Weber, R; Furrer, H; Cavassini, M; Calmy, A; Vernazza, P; Bernasconi, E; Khoo, S; Battegay, M; Elzi, L (2011). Ageing with HIV: medication use and risk for potential drug-drug interactions. Journal of Antimicrobial Chemotherapy, 66(9):2107-2111.

Kouyos, R D; von Wyl, V; Yerly, S; Böni, J; Rieder, P; Joos, B; Taffé, P; Shah, C; Bürgisser, P; Klimkait, T; Weber, R; Hirschel, B; Cavassini, M; Rauch, A; Battegay, M; Vernazza, P L; Bernasconi, E; Ledergerber, B; Bonhoeffer, S; Günthard, H F (2011). Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection. Clinical Infectious Diseases, 52(4):532-539.

Røysland, K; Gran, J M; Ledergerber, B; von Wyl, V; Young, J; Aalen, O O (2011). Analyzing direct and indirect effects of treatment using dynamic path analysis applied to data from the Swiss HIV Cohort Study. Statistics in Medicine, 30(24):2947-2958.

Ruef, C (2011). Antibiotic resistance really starts to hurt. Infection, 39(6):499-500.

Kouyos, R D; von Wyl, V; Hinkley, T; Petropoulos, C J; Haddad, M; Whitcomb, J M; Böni, J; Yerly, S; Cellerai, C; Klimkait, T; Günthard, H F; Bonhoeffer, S (2011). Assessing predicted HIV-1 replicative capacity in a clinical setting. PLoS Pathogens, 7(11):e1002321.

Lubomirov, R; Colombo, S; di Iulio, J; Ledergerber, B; Martinez, R; Cavassini, M; Hirschel, B; Bernasconi, E; Elzi, L; Vernazza, P; Furrer, H; Günthard, H F; Telenti, A (2011). Association of pharmacogenetic markers with premature discontinuation of first-line anti-HIV therapy: an observational cohort study. Journal of Infectious Diseases, 203(2):246-257.

Ruef, C (2011). Borrelia burgdorferi bacteremia. Infection, 39(1):1.

Rampini, S K; Bloemberg, G V; Keller, P M; Büchler, A C; Dollenmaier, G; Speck, R F; Böttger, E C (2011). Broad-range 16S rRNA gene polymerase chain reaction for diagnosis of culture-negative bacterial infections. Clinical Infectious Diseases, 53(12):1245-1251.

Baker, J V; Neuhaus, J; Duprez, D; Kuller, L H; Tracy, R; Belloso, W H; De Wit, S; Drummond, F; Lane, H C; Ledergerber, B; Lundgren, J; Nixon, D E; Paton, N I; Neaton, J D (2011). Changes in inflammatory and coagulation biomarkers: a randomized comparison of immediate versus deferred antiretroviral therapy in patients with HIV infection. JAIDS Journal of Acquired Immune Deficiency Syndromes, 56(1):36-43.

Achermann, Y; Vogt, M; Spormann, C; Kolling, C; Remschmidt, C; Wüst, J; Simmen, B; Trampuz, A (2011). Characteristics and outcome of 27 elbow periprosthetic joint infection: Results from a 14-year cohort study of 358 elbow prostheses. Clinical Microbiology and Infection, 17(3):432-438.

Rieder, P; Joos, B; Scherrer, A U; Kuster, H; Braun, D; Grube, C; Niederöst, B; Leemann, C; Gianella, S; Metzner, K J; Böni, J; Weber, R; Günthard, H F (2011). Characterization of human immunodeficiency virus type 1 (HIV-1) diversity and tropism in 145 patients with primary HIV-1 infection. Clinical Infectious Diseases, 53(12):1271-1279.

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Ruef, C (2011). Community-onset bacteremia may be an ominous sign. Infection, 39(5):397.

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Boillat-Blanco, Noémie; Probst, A; Da Costa, V W; Giulieri, S; Bernasconi, E; Calmy, A; Elzi, L; Rauch, A; Weber, R; Bertisch, B; Cavassini, M; Bochud, P Y (2011). Impact of a nurse vaccination program on hepatitis B immunity in a Swiss HIV clinic. Journal of Acquired Immune Deficiency Syndromes, 58(5):472-474.

Elzi, L; Steffen, I; Furrer, H; Fehr, J; Cavassini, M; Hirschel, B; Hoffmann, M; Bernasconi, E; Bassetti, S; Battegay, M (2011). Improved sensitivity of an interferon-gamma release assay (T-SPOT.TB™) in combination with tuberculin skin test for the diagnosis of latent tuberculosis in the presence of HIV co-infection. BMC Infectious Diseases, 11:319.

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Knoepfel, S A; Di Giallonardo, F; Däumer, M; Thielen, A; Metzner, K J (2011). In-depth analysis of G-to-A hypermutation rate in HIV-1 env DNA induced by endogenous APOBEC3 proteins using massively parallel sequencing. Journal of Virological Methods, 171(2):329-338.

Kuster, S P; Shah, P S; Coleman, B L; Lam, P P; Tong, A; Wormsbecker, A; McGeer, A (2011). Incidence of influenza in healthy adults and healthcare workers: a systematic review and meta-analysis. PLoS ONE, 6(10):e26239.

Colombo, C; Masserey, V; Ruef, C (2011). Incidence of needlestick injuries and other sharps exposures in Swiss acute care hospitals: results of a sentinel surveillance study. Journal of Hospital Infection, 77(2):181-183.

Kovari, H; Weber, R (2011). Influence of antiretroviral therapy on liver disease. Current Opinion in HIV and AIDS, 6(4):272-277.

Giner, A M; Kuster, S P; Zbinden, R; Ruef, C; Ledergerber, B; Weber, R (2011). Initial management of and outcome in patients with pneumococcal bacteremia: a retrospective study at a Swiss university hospital, 2003-2009. Infection, 39(6):519-526.

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Kaufmann, G R; Elzi, L; Weber, R; Furrer, H; Giulieri, S; Vernazza, P; Bernasconi, E; Hirschel, B; Battegay, M (2011). Interruptions of cART limits CD4 T-cell recovery and increases the risk for opportunistic complications and death. AIDS, 25(4):441-451.

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Mayer, D; Hasse, B; Koelliker, J; Enzler, M; Veith, F J; Rancic, Z; Lachat, M (2011). Long-term results of vascular graft and artery preserving treatment with negative pressure wound therapy in Szilagyi grade III infections justify a paradigm shift. Annals of Surgery, 254(5):754-759; discussion 760.

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Mueller, N J; Takeuchi, Y; Mattiuzzo, G; Scobie, L (2011). Microbial safety in xenotransplantation. Current Opinion in Organ Transplantation, 16(2):201-206.

Weber, R; Deplazes, P; Mathis, A (2011). Microsporidia. In: Versalovic, J. Manual of clinical microbiology (10th ed.). Washington, DC, US: ASM Press, 2190-2199.

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Hasse, B; Ledergerber, B; Furrer, H; Battegay, M; Hirschel, B; Cavassini, M; Bertisch, B; Bernasconi, E; Weber, R (2011). Morbidity and aging in HIV-infected persons: the Swiss HIV cohort study. Clinical Infectious Diseases, 53(11):1130-1139.

Soriano, V; Arastéh, K; Migrone, H; Lutz, T; Opravil, M; Andrade-Villanueva, J; Antunes, F; Di Perri, G; Podzamczer, D; Taylor, S; Domingo, P; Gellermann, H; de Rossi, L (2011). Nevirapine versus atazanavir/ritonavir, each combined with tenofovir disoproxil fumarate/emtricitabine, in antiretroviral-naive HIV-1 patients: the ARTEN trial. Antiviral Therapy, 16(3):339-348.

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Müller, N J (2011). Pneumocystis jirovecii Pneumonia: Prophylaxis and therapy. In: Kumar, D; Humar, A. AST handbook of transplant infections. Chichester, UK: Wiley-Blackwell, 79.

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Schlaepfer, E; Speck, R F (2011). TLR8 activates HIV from latently infected cells of myeloid-monocytic origin directly via the MAPK pathway and from latently infected CD4+ T cells indirectly via TNF-α. Journal of Immunology, 186(7):4314-4324.

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Ledergerber, B; Cavassini, M; Battegay, M; Bernasconi, E; Vernazza, P; Hirschel, B; Furrer, H; Rickenbach, M; Weber, R (2011). Trends over time of virological and immunological characteristics in the Swiss HIV Cohort Study. HIV Medicine, 12(5):279-288.

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Cain, L E; Logan, R; Robins, J M; Sterne, J A C; Sabin, C; Bansi, L; Justice, A; Goulet, J; van Sighem, A; de Wolf, F; Bucher, H C; von Wyl, V; Esteve, A; Casabona, J; del Amo, J; Moreno, S; Seng, R; Meyer, L; Perez-Hoyos, S; Muga, R; Lodi, S; Lanoy, E; Costagliola, D; Hernan, M A (2011). When to initiate combined antiretroviral therapy to reduce mortality and AIDS-defining illness in HIV-infected persons in developed countries: an observational study. Annals of Internal Medicine, 154(8):509-515.

Ruef, C (2011). Why do physicians prescribe antibiotics? Infection, 39(4):287.

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Nicoletti, J; Kuster, S; Sulser, T; Zbinden, R; Ruef, C; Ledergerber, B; Weber, R (2010). Risk factors for urinary tract infections due to ciprofloxacin-resistant Escherichia coli in a tertiary care urology department in Switzerland. Swiss Medical Weekly, (140):w13059.

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Opravil, M; Klimkait, T; Louvel, S; Wolf, E; Battegay, M; Fux, C A; Bernasconi, E; Vogel, M; Speck, R; Weber, R (2010). Prior therapy influences the efficacy of lamivudine monotherapy in patients with lamivudine-resistant HIV-1 infection. JAIDS Journal of Acquired Immune Deficiency Syndromes, 54(1):51-58.

Kovari, H; Ebnöther, C; Schweiger, A; Berther, N; Kuster, H; Günthard, H F (2010). Pulmonary toxoplasmosis, a rare but severe manifestation of a common opportunistic infection in late HIV presenters: report of two cases. Infection, 38(2):141-144.

Hofer, U; Schlaepfer, E; Baenziger, S; Nischang, M; Regenass, S; Schwendener, R; Kempf, W; Nadal, D; Speck, R F (2010). Inadequate clearance of translocated bacterial products in HIV-infected humanized mice. PLoS Pathogens, 6(4):e1000867.

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Colombo, C; Ledergerber, B; Zysset, F; Francioli, P; Cavassini, M; Ruef, C (2010). HIV-, HBV und HCV-Exposition im medizinischen Bereich in der Schweiz von 2001 bis Ende Juni 2008. BAG Bulletin, (3):36-42.

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Lucke, K; Kuster, S P; Bertea, M; Ruef, C; Bloemberg, G V (2010). A deep sternal wound infection caused by Ureaplasma urealyticum. Journal of Medical Microbiology, 59(Pt 10):1254-1256.

Gran, J M; Røysland, K; Wolbers, M; Didelez, V; Sterne, J A C; Ledergerber, B; Furrer, H; von Wyl, V; Aalen, O O (2010). A sequential Cox approach for estimating the causal effect of treatment in the presence of time-dependent confounding applied to data from the Swiss HIV Cohort Study. Statistics in Medicine, 29(26):2757-2768.

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