Publication: BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods
BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods
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Gorgolewski, K. J., Alfaro-Almagro, F., Auer, T., Bellec, P., Capotă, M., Chakravarty, M. M., Churchill, N. W., Cohen, A. L., Craddock, R. C., Devenyi, G. A., Eklund, A., Esteban, O., Flandin, G., Ghosh, S. S., Guntupalli, J. S., Jenkinson, M., Keshavan, A., Kiar, G., Liem, F., … Poldrack, R. A. (2017). BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. PLoS Computational Biology, 13(3), e1005209. https://doi.org/10.1371/journal.pcbi.1005209
Abstract
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The rate of progress in human neurosciences is limited by the inability to easily apply a wide range of analysis methods to the plethora of different datasets acquired in labs around the world. In this work, we introduce a framework for creating, testing, versioning and archiving portable applications for analyzing neuroimaging data organized and described in compliance with the Brain Imaging Data Structure (BIDS). The portability of these applications (BIDS Apps) is achieved by using container technologies that encapsulate all binary
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Creators (Authors)
- Gorgolewski, Krzysztof J
- Alfaro-Almagro, Fidel
- Auer, Tibor
- Bellec, Pierre
- Capotă, Mihai
- Chakravarty, M Mallar
- Churchill, Nathan W
- Cohen, Alexander Li
- Craddock, R Cameron
- Devenyi, Gabriel A
- Eklund, Anders
- Esteban, Oscar
- Flandin, Guillaume
- Ghosh, Satrajit S
- Guntupalli, J Swaroop
- Jenkinson, Mark
- Keshavan, Anisha
- Kiar, Gregory
- Liem, Franziskus
- Raamana, Pradeep Reddy
- Raffelt, David
- Steele, Christopher J
- Quirion, Pierre-Olivier
- Smith, Robert E
- Strother, Stephen C
- Varoquaux, Gaël
- Wang, Yida
- Yarkoni, Tal
- Poldrack, Russell A
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Citations
Gorgolewski, K. J., Alfaro-Almagro, F., Auer, T., Bellec, P., Capotă, M., Chakravarty, M. M., Churchill, N. W., Cohen, A. L., Craddock, R. C., Devenyi, G. A., Eklund, A., Esteban, O., Flandin, G., Ghosh, S. S., Guntupalli, J. S., Jenkinson, M., Keshavan, A., Kiar, G., Liem, F., … Poldrack, R. A. (2017). BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. PLoS Computational Biology, 13(3), e1005209. https://doi.org/10.1371/journal.pcbi.1005209
