Publication:

Nanopore Deep Sequencing as a Tool to Characterize and Quantify Aberrant Splicing Caused by Variants in Inherited Retinal Dystrophy Genes

Date

Date

Date
2024
Journal Article
Published version

Citations

Citation copied

Maggi, J., Feil, S., Gloggnitzer, J., Maggi, K., Bachmann-Gagescu, R., Gerth-Kahlert, C., Koller, S., & Berger, W. (2024). Nanopore Deep Sequencing as a Tool to Characterize and Quantify Aberrant Splicing Caused by Variants in Inherited Retinal Dystrophy Genes. International Journal of Molecular Sciences, 25, 9569. https://doi.org/10.3390/ijms25179569

Abstract

Abstract

Abstract

The contribution of splicing variants to molecular diagnostics of inherited diseases is reported to be less than 10%. This figure is likely an underestimation due to several factors including difficulty in predicting the effect of such variants, the need for functional assays, and the inability to detect them (depending on their locations and the sequencing technology used). The aim of this study was to assess the utility of Nanopore sequencing in characterizing and quantifying aberrant splicing events. For this purpose, we selected 1

Metrics

Downloads

75 since deposited on 2024-09-27
Acq. date: 2025-11-12

Views

2 since deposited on 2024-09-27
Acq. date: 2025-11-12

Additional indexing

Creators (Authors)

Journal/Series Title

Journal/Series Title

Journal/Series Title

Volume

Volume

Volume
25

Number

Number

Number
17

Page range/Item number

Page range/Item number

Page range/Item number
9569

Item Type

Item Type

Item Type
Journal Article

Dewey Decimal Classifikation

Dewey Decimal Classifikation

Dewey Decimal Classifikation

Keywords

Genetics, Genetics (clinical), splicing, splice variant, Nanopore, pseudoexon, minigene assay, exon skipping, inherited retinal dystrophies (IRDs), long-read sequencing

Language

Language

Language
English

Publication date

Publication date

Publication date
2024-09-03

Date available

Date available

Date available
2024-09-27

Publisher

Publisher

Publisher

ISSN or e-ISSN

ISSN or e-ISSN

ISSN or e-ISSN
1422-0067

Additional Information

Additional Information

Additional Information
The original raw data (FASTQ files) used in the study are openly available in Zenodo at 10.5281/zenodo.13143657.

OA Status

OA Status

OA Status
Gold

Free Access at

Free Access at

Free Access at
DOI

PubMed ID

PubMed ID

PubMed ID

Other Identification Number

Other Identification Number

Other Identification Number
Corpus ID: 272394634

Related URLs

Related URLs

Related URLs

Metrics

Downloads

75 since deposited on 2024-09-27
Acq. date: 2025-11-12

Views

2 since deposited on 2024-09-27
Acq. date: 2025-11-12

Citations

Citation copied

Maggi, J., Feil, S., Gloggnitzer, J., Maggi, K., Bachmann-Gagescu, R., Gerth-Kahlert, C., Koller, S., & Berger, W. (2024). Nanopore Deep Sequencing as a Tool to Characterize and Quantify Aberrant Splicing Caused by Variants in Inherited Retinal Dystrophy Genes. International Journal of Molecular Sciences, 25, 9569. https://doi.org/10.3390/ijms25179569

Gold Open Access
Loading...
Thumbnail Image

Files

Files

Files
Files available to download:5
Show more files

Files

Files

Files
Files available to download:5
Loading...
Thumbnail Image
Show more files