Publication: An exact accelerated stochastic simulation algorithm.
An exact accelerated stochastic simulation algorithm.
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Mjolsness, E., Orendorff, D., Chatelain, P., & Koumoutsakos, P. (2009). An exact accelerated stochastic simulation algorithm. The Journal of Chemical Physics, 130, 144110. https://doi.org/10.1063/1.3078490
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Abstract
An exact method for stochastic simulation of chemical reaction networks, which accelerates the stochastic simulation algorithm (SSA), is proposed. The present "ER-leap" algorithm is derived from analytic upper and lower bounds on the multireaction probabilities sampled by SSA, together with rejection sampling and an adaptive multiplicity for reactions. The algorithm is tested on a number of well-quantified reaction networks and is found experimentally to be very accurate on test problems including a chaotic reaction network. At the sa
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- Mjolsness, E
- Orendorff, D
- Chatelain, P
- Koumoutsakos, P
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Mjolsness, E., Orendorff, D., Chatelain, P., & Koumoutsakos, P. (2009). An exact accelerated stochastic simulation algorithm. The Journal of Chemical Physics, 130, 144110. https://doi.org/10.1063/1.3078490
