Publication: TRAL: tandem repeat annotation library
TRAL: tandem repeat annotation library
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Citations
Schaper, E., Korsunsky, A., Pečerska, J., Messina, A., Murri, R., Stockinger, H., Zoller, S., Xenarios, I., & Anisimova, M. (2015). TRAL: tandem repeat annotation library. Bioinformatics, 31(18), 3051–3053. https://doi.org/10.1093/bioinformatics/btv306
Abstract
Abstract
Abstract
Motivation: Currently, more than 40 sequence tandem repeat detectors are published, providing heterogeneous, partly complementary, partly conflicting results. Results: We present TRAL, a tandem repeat annotation library that allows running and parsing of various detection outputs, clustering of redundant or overlapping annotations, several statistical frameworks for filtering false positive annotations, and importantly a tandem repeat annotation and refinement module based on circular profile hidden Markov models (cpHMMs). Using TRAL,
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Creators (Authors)
- Schaper, Elke
- Korsunsky, Alexander
- Pečerska, Jūlija
- Messina, Antonio
- Murri, Riccardo
- Stockinger, Heinz
- Zoller, Stefan
- Xenarios, Ioannis
- Anisimova, Maria
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Citations
Schaper, E., Korsunsky, A., Pečerska, J., Messina, A., Murri, R., Stockinger, H., Zoller, S., Xenarios, I., & Anisimova, M. (2015). TRAL: tandem repeat annotation library. Bioinformatics, 31(18), 3051–3053. https://doi.org/10.1093/bioinformatics/btv306
