Publication: Detecting Signatures of TE Polymorphisms in Short-Read Sequencing Data
Detecting Signatures of TE Polymorphisms in Short-Read Sequencing Data
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Stritt, C., & Roulin, A. C. (2021). Detecting Signatures of TE Polymorphisms in Short-Read Sequencing Data. In J. Cho (Ed.), Plant transposable elements (No. 2250; Issue 2250, pp. 177–187). Springer. https://doi.org/10.1007/978-1-0716-1134-0_17
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Transposable elements (TEs) are an important cause of evolutionary change and functional diversity, yet they are routinely discarded in the first steps of many analyses. In this chapter we show how, given a reference genome, TEs can be incorporated fairly easily into functional and evolutionary studies. We offer a glimpse into a program which detects TE insertion polymorphisms and discuss practical issues arising from the diversity of TEs and genome architectures. Detecting TE polymorphisms relies on a series of ad hoc criteria becaus
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- Stritt, Christoph
- Roulin, Anne C
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Stritt, C., & Roulin, A. C. (2021). Detecting Signatures of TE Polymorphisms in Short-Read Sequencing Data. In J. Cho (Ed.), Plant transposable elements (No. 2250; Issue 2250, pp. 177–187). Springer. https://doi.org/10.1007/978-1-0716-1134-0_17
