Publication:

Assessing clinical utility of preconception expanded carrier screening regarding residual risk for neurodevelopmental disorders

Date

Date

Date
2022
Journal Article
Published version

Citations

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Boonsawat, P., Horn, A. H. C., Steindl, K., Baumer Wolz, A., Joset, P., Kraemer, D., Bahr, A., Ivanovski, I., Cabello Ferrete, E., Papik, M., Zweier, M., Oneda, B., Sirleto, P., Burkhardt, T., Sticht, H., & Rauch, A. (2022). Assessing clinical utility of preconception expanded carrier screening regarding residual risk for neurodevelopmental disorders. N p j Genomic Medicine, 7(1), 45. https://doi.org/10.1038/s41525-022-00316-x

Abstract

Abstract

Abstract

The magnitude of clinical utility of preconception expanded carrier screening (ECS) concerning its potential to reduce the risk of affected offspring is unknown. Since neurodevelopmental disorders (NDDs) in their offspring is a major concern of parents-to-be, we addressed the question of residual risk by assessing the risk-reduction potential for NDDs in a retrospective study investigating ECS with different criteria for gene selection and definition of pathogenicity. We used exome sequencing data from 700 parents of children with ND

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8 since deposited on 2022-08-03
Acq. date: 2025-11-09

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2 since deposited on 2022-08-03
Acq. date: 2025-11-09

Additional indexing

Creators (Authors)

Journal/Series Title

Journal/Series Title

Journal/Series Title

Volume

Volume

Volume
7

Number

Number

Number
1

Page Range

Page Range

Page Range
45

Item Type

Item Type

Item Type
Journal Article

Dewey Decimal Classifikation

Dewey Decimal Classifikation

Dewey Decimal Classifikation

Keywords

genetic testing, preventive medicine

Language

Language

Language
English

Publication date

Publication date

Publication date
2022-07-29

Date available

Date available

Date available
2022-08-03

Publisher

Publisher

Publisher

ISSN or e-ISSN

ISSN or e-ISSN

ISSN or e-ISSN
2056-7944

Additional Information

Additional Information

Additional Information
Data availability Data that support the findings of this study are available in the supplementary tables. Due to the limitations of the ethics approval and informed consent signed by the participants, the raw exome sequencing data used for this study cannot be deposited into a public repository; however, ethical approval and consent does allow for data sharing but only in the context of an approved study collaboration. These raw data are available from the SwissGenVar database (https://sphn.ch/network/projects/infrastructure-development-projects/project-page-swissgenvar/). Requests for access to these data must comply consortium rules and require a Data Transfer and Use Agreement, as well as ethical approval for the usage of these data. Correspondence and requests for access to these data should be addressed to swissgenvar@medgen.uzh.ch. Code availability NextGene V2.4.2.3 (Softgenetics Inc.), Automap v1.0, SwissProt (accessed at https://swissmodel.expasy.org/repository on 2 April 2020), ModBase (accessed at https://salilab.org/modbase-download/ on 9 November 2019), PFAM (accessed at http://hmmer.org on 30 March 2020), LASER version 2.04 (https://laser.sph.umich.edu/index.html#!), and R version 4.1.0, ClinVar (https://www.ncbi.nlm.nih.gov/clinvar/, 28 March 2021), HGMD Professional 2021 (Qiagen Inc.), VIPUR (accessed at https://osf.io/bd2h4/ on 28 March 2018); SIFT, PolyPhen2, LRT, MutationTaster, MutationAccessor, FATHMM, PROVEAN, M.CAP, and CADD score (embedded in NextGene V2.4.2.3). Variant filtering was conducted using custom code in R (4.1.0), which is available upon reasonable request.

OA Status

OA Status

OA Status
Gold

Free Access at

Free Access at

Free Access at
Pubmed ID

PubMed ID

PubMed ID

PubMed ID

Funder name

Funder name

Funder name
University of Zurich
University of Zurich
SNSF

Grant ID

Grant ID

Grant ID
320030_179547

Project Title

Project Title

Project Title
CRPP Praeclare
CRPP Praeclare
Genetic causes and molecular mechanisms in severe intellectual disability

Metrics

Downloads

8 since deposited on 2022-08-03
Acq. date: 2025-11-09

Views

2 since deposited on 2022-08-03
Acq. date: 2025-11-09

Citations

Citation copied

Boonsawat, P., Horn, A. H. C., Steindl, K., Baumer Wolz, A., Joset, P., Kraemer, D., Bahr, A., Ivanovski, I., Cabello Ferrete, E., Papik, M., Zweier, M., Oneda, B., Sirleto, P., Burkhardt, T., Sticht, H., & Rauch, A. (2022). Assessing clinical utility of preconception expanded carrier screening regarding residual risk for neurodevelopmental disorders. N p j Genomic Medicine, 7(1), 45. https://doi.org/10.1038/s41525-022-00316-x

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