Publication:

Management of DNA reference libraries for barcoding and metabarcoding studies with the R package refdb

Date

Date

Date
2023
Journal Article
Published version

Citations

Citation copied

Keck, F., & Altermatt, F. (2023). Management of DNA reference libraries for barcoding and metabarcoding studies with the R package refdb. Molecular Ecology Resources, 23(2), 511–518. https://doi.org/10.1111/1755-0998.13723

Abstract

Abstract

Abstract

DNA barcoding and metabarcoding are revolutionizing the study and survey of biodiversity. In order to assign taxonomic labels to the DNA sequence data retrieved, these methods are strongly dependent on comprehensive and accurate reference databases. Producing reliable databases linking biological sequences and taxonomic data can be—and often has been—done using mainstream tools such as spreadsheet software. However, spreadsheets quickly become insufficient when the amount of data increases to thousands of taxa and sequences to be matc

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5 since deposited on 2022-12-09
Acq. date: 2025-11-13

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1 since deposited on 2022-12-09
Acq. date: 2025-11-13

Additional indexing

Creators (Authors)

  • Keck, François
    affiliation.icon.alt
  • Altermatt, Florian
    affiliation.icon.alt

Journal/Series Title

Journal/Series Title

Journal/Series Title

Volume

Volume

Volume
23

Number

Number

Number
2

Page range/Item number

Page range/Item number

Page range/Item number
511

Page end

Page end

Page end
518

Item Type

Item Type

Item Type
Journal Article

Dewey Decimal Classifikation

Dewey Decimal Classifikation

Dewey Decimal Classifikation

Keywords

barcoding, DNA reference library, metabarcoding, R package, reference database

Language

Language

Language
English

Publication date

Publication date

Publication date
2023-02-01

Date available

Date available

Date available
2022-12-09

Publisher

Publisher

Publisher

ISSN or e-ISSN

ISSN or e-ISSN

ISSN or e-ISSN
1755-0998

OA Status

OA Status

OA Status
Green

Metrics

Downloads

5 since deposited on 2022-12-09
Acq. date: 2025-11-13

Views

1 since deposited on 2022-12-09
Acq. date: 2025-11-13

Citations

Citation copied

Keck, F., & Altermatt, F. (2023). Management of DNA reference libraries for barcoding and metabarcoding studies with the R package refdb. Molecular Ecology Resources, 23(2), 511–518. https://doi.org/10.1111/1755-0998.13723

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Files
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Files

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