Publication:

SwissGenVar: A platform for clinical grade interpretation of genetic variants to foster personalized health care in Switzerland

Date

Date

Date
2023
Working Paper

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Kraemer, D., Terumalai, D., Famiglietti, M. L., Filges, I., Joset, P., Koller, S., Maurer, F., Meier, S., Nouspikel, T., Sanz, J., Zweier, C., Abramowicz, M., Berger, W., Cichon, S., Schaller, A., Superti-Furga, A., Barbié, V., & Rauch, A. (2023). SwissGenVar: A platform for clinical grade interpretation of genetic variants to foster personalized health care in Switzerland (No. 22283790; MedRxiv). https://doi.org/10.1101/2023.01.11.22283790

Abstract

Abstract

Abstract

Large-scale next-generation sequencing (NGS) germline testing is technically feasible today, but variant interpretation represents a major bottleneck in analysis workflows including the extensive variant prioritization, annotation, and time-consuming evidence curation. The scale of the interpretation problem is massive, and variants of uncertain significance (VUS) are a challenge to personalized medicine. This challenge is further compounded by the complexity and heterogeneity of standards used to describe genetic variants and associa

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84 since deposited on 2023-01-12
76last week
Acq. date: 2025-11-13

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181 since deposited on 2023-01-12
178last week
Acq. date: 2025-11-13

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Additional indexing

Creators (Authors)

  • Terumalai, Dillenn
  • Famiglietti, Maria Livia
  • Filges, Isabel
  • Joset, Pascal
  • Koller, Samuel
  • Maurer, Fabienne
  • Meier, Stéphanie
  • Nouspikel, Thierry
  • Sanz, Javier
  • Zweier, Christiane
  • Abramowicz, Marc
  • Berger, Wolfgang
  • Cichon, Sven
  • Schaller, André
  • Superti-Furga, Andrea
  • Barbié, Valérie
  • Rauch, Anita

Series Name

Series Name

Series Name
medRxiv

Institution

Institution

Institution

Item Type

Item Type

Item Type
Working Paper

Dewey Decimal Classifikation

Dewey Decimal Classifikation

Dewey Decimal Classifikation

Keywords

SwissGenVar, Switzerland, NGS, expert-curated variant interpretation, national mutation database, genotype-phenotype database, personalized medicine

Language

Language

Language
English

Publication date

Publication date

Publication date
2023-01-11

Date available

Date available

Date available
2023-01-12

ISSN or e-ISSN

ISSN or e-ISSN

ISSN or e-ISSN
0959-535X

Additional Information

Additional Information

Additional Information
Data Availability Statement: The SwissGenVar documentation and public website are available at: https://pages.sib.swiss/project/swissgenvar-doc/ and https://pages.sib.swiss/project/swissgenvar/, respectively. The project GitLab site is available at https://gitlab.sib.swiss/clinbio/swissgenvar/sgv-knowledge/-/tree/master .

OA Status

OA Status

OA Status
Green

Free Access at

Free Access at

Free Access at
DOI

Metrics

Downloads

84 since deposited on 2023-01-12
76last week
Acq. date: 2025-11-13

Views

181 since deposited on 2023-01-12
178last week
Acq. date: 2025-11-13

Citations

Citations

Citation copied

Kraemer, D., Terumalai, D., Famiglietti, M. L., Filges, I., Joset, P., Koller, S., Maurer, F., Meier, S., Nouspikel, T., Sanz, J., Zweier, C., Abramowicz, M., Berger, W., Cichon, S., Schaller, A., Superti-Furga, A., Barbié, V., & Rauch, A. (2023). SwissGenVar: A platform for clinical grade interpretation of genetic variants to foster personalized health care in Switzerland (No. 22283790; MedRxiv). https://doi.org/10.1101/2023.01.11.22283790

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