Publication: Dependency parsing for interaction detection in pharmacogenomics
Dependency parsing for interaction detection in pharmacogenomics
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Schneider, G., Rinaldi, F., & Clematide, S. (2012, May 25). Dependency parsing for interaction detection in pharmacogenomics. Proceedings of LREC 2012: The Eighth International Conference on Language Resources and Evaluation. LREC 2012: The eighth international conference on Language Resources and Evaluation, Istanbul.
Abstract
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We give an overview of our approach to the extraction of interactions between pharmacogenomic entities like drugs, genes and diseases and suggest classes of interaction types driven by data from PharmGKB and partly following the top level ontology WordNet and biomedical types from BioNLP. Our text mining approach to the extraction of interactions is based on syntactic analysis. We use syntactic analyses to explore domain events and to suggest a set of interaction labels for the pharmacogenomics domain.
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- Schneider, Gerold
- Rinaldi, Fabio
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Schneider, G., Rinaldi, F., & Clematide, S. (2012, May 25). Dependency parsing for interaction detection in pharmacogenomics. Proceedings of LREC 2012: The Eighth International Conference on Language Resources and Evaluation. LREC 2012: The eighth international conference on Language Resources and Evaluation, Istanbul.
