Publication: Fast Exact Stochastic Simulation Algorithms Using Partial Propensities
Fast Exact Stochastic Simulation Algorithms Using Partial Propensities
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Ramaswamy, R., & Sbalzarini, I. F. (2010). Fast Exact Stochastic Simulation Algorithms Using Partial Propensities. AIP Conference Proceedings, 1338–1341. https://doi.org/10.1063/1.3497968
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We review the class of partial-propensity exact stochastic simulation algorithms (SSA) for chemical reaction networks. We show which modules partial-propensity SSAs are composed of and how partial-propensity variants of known SSAs can be constructed by adjusting the sampling strategy used. We demonstrate this on the example of two instances, namely the partial-propensity variant of Gillespie’s original direct method and that of the SSA with composition-rejection sampling (SSA-CR). Partial-propensity methods may outperform the correspo
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- Ramaswamy, Rajesh
- Sbalzarini, Ivo F
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Ramaswamy, R., & Sbalzarini, I. F. (2010). Fast Exact Stochastic Simulation Algorithms Using Partial Propensities. AIP Conference Proceedings, 1338–1341. https://doi.org/10.1063/1.3497968
