Publication:

PhenoScore quantifies phenotypic variation for rare genetic diseases by combining facial analysis with other clinical features using a machine-learning framework

Date

Date

Date
2023
Journal Article
Published version

Citations

Citation copied

Dingemans, A. J. M., Hinne, M., Truijen, K. M. G., Goltstein, L., van Reeuwijk, J., de Leeuw, N., Schuurs-Hoeijmakers, J., Pfundt, R., Diets, I. J., den Hoed, J., de Boer, E., Coenen-van der Spek, J., Jansen, S., van Bon, B. W., Jonis, N., Ockeloen, C. W., Vulto-van Silfhout, A. T., Kleefstra, T., Koolen, D. A., … et al. (2023). PhenoScore quantifies phenotypic variation for rare genetic diseases by combining facial analysis with other clinical features using a machine-learning framework. Nature Genetics, 55, 1598–1607. https://doi.org/10.1038/s41588-023-01469-w

Abstract

Abstract

Abstract

Several molecular and phenotypic algorithms exist that establish genotype–phenotype correlations, including facial recognition tools. However, no unified framework that investigates both facial data and other phenotypic data directly from individuals exists. We developed PhenoScore: an open-source, artificial intelligence-based phenomics framework, combining facial recognition technology with Human Phenotype Ontology data analysis to quantify phenotypic similarity. Here we show PhenoScore’s ability to recognize distinct phenotypic ent

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1 since deposited on 2023-08-11
Acq. date: 2025-11-13

Views

102 since deposited on 2023-08-11
Acq. date: 2025-11-13

Additional indexing

Creators (Authors)

  • Dingemans, Alexander J M
  • Hinne, Max
  • Truijen, Kim M G
  • Goltstein, Lia
  • van Reeuwijk, Jeroen
  • de Leeuw, Nicole
  • Schuurs-Hoeijmakers, Janneke
  • Pfundt, Rolph
  • Diets, Illja J
  • den Hoed, Joery
  • de Boer, Elke
  • Coenen-van der Spek, Jet
  • Jansen, Sandra
  • van Bon, Bregje W
  • Jonis, Noraly
  • Ockeloen, Charlotte W
  • Vulto-van Silfhout, Anneke T
  • Kleefstra, Tjitske
  • Koolen, David A
  • Campeau, Philippe M
  • Palmer, Elizabeth E
  • Van Esch, Hilde
  • Lyon, Gholson J
  • Alkuraya, Fowzan S
  • Rauch, Anita
  • Marom, Ronit
  • Baralle, Diana
  • van der Sluijs, Pleuntje J
  • Santen, Gijs W E
  • Kooy, R Frank
  • et al

Journal/Series Title

Journal/Series Title

Journal/Series Title

Volume

Volume

Volume
55

Number

Number

Number
9

Page range/Item number

Page range/Item number

Page range/Item number
1598

Page end

Page end

Page end
1607

Item Type

Item Type

Item Type
Journal Article

Dewey Decimal Classifikation

Dewey Decimal Classifikation

Dewey Decimal Classifikation

Keywords

Genetics, Genetics (clinical), Clinical genetics, Genetics research, Neurodevelopmental disorders, Software

Language

Language

Language
English

Publication date

Publication date

Publication date
2023-09-01

Date available

Date available

Date available
2023-08-11

Publisher

Publisher

Publisher

ISSN or e-ISSN

ISSN or e-ISSN

ISSN or e-ISSN
1061-4036

Additional Information

Additional Information

Additional Information
Data availability The used dataset in this study is not publicly available due to both IRB and General Data Protection Regulation (EU GDPR) restrictions because the data might be (partially) traceable. However, access to the data may be requested from the data availability committee by contacting the corresponding authors via e-mail with a research proposal, who will respond within 14 d. Code availability The code of PhenoScore version 1.0.0 created during this study is freely available at https://github.com/ldingemans/PhenoScore ref. 83, to enable anyone to apply PhenoScore to their own dataset. Included in PhenoScore are the following two examples: the data for the SATB1 subgroups (positive example) and random data (negative example).

OA Status

OA Status

OA Status
Closed

PubMed ID

PubMed ID

PubMed ID

Metrics

Downloads

1 since deposited on 2023-08-11
Acq. date: 2025-11-13

Views

102 since deposited on 2023-08-11
Acq. date: 2025-11-13

Citations

Citation copied

Dingemans, A. J. M., Hinne, M., Truijen, K. M. G., Goltstein, L., van Reeuwijk, J., de Leeuw, N., Schuurs-Hoeijmakers, J., Pfundt, R., Diets, I. J., den Hoed, J., de Boer, E., Coenen-van der Spek, J., Jansen, S., van Bon, B. W., Jonis, N., Ockeloen, C. W., Vulto-van Silfhout, A. T., Kleefstra, T., Koolen, D. A., … et al. (2023). PhenoScore quantifies phenotypic variation for rare genetic diseases by combining facial analysis with other clinical features using a machine-learning framework. Nature Genetics, 55, 1598–1607. https://doi.org/10.1038/s41588-023-01469-w

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