Publication: Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks
Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks
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Doncheva, N. T., Morris, J. H., Holze, H., Kirsch, R., Nastou, K. C., Cuesta-Astroz, Y., Rattei, T., Szklarczyk, D., von Mering, C., & Jensen, L. J. (2023). Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks. Journal of Proteome Research, 22, 637–646. https://doi.org/10.1021/acs.jproteome.2c00651
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Biological networks are often used to represent complex biological systems, which can contain several types of entities. Analysis and visualization of such networks is supported by the Cytoscape software tool and its many apps. While earlier versions of stringApp focused on providing intraspecies protein-protein interactions from the STRING database, the new stringApp 2.0 greatly improves the support for heterogeneous networks. Here, we highlight new functionality that makes it possible to create networks that contain proteins and int
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- Doncheva, Nadezhda T
- Morris, John H
- Holze, Henrietta
- Kirsch, Rebecca
- Nastou, Katerina C
- Cuesta-Astroz, Yesid
- Rattei, Thomas
- Szklarczyk, Damian
- Jensen, Lars J
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Doncheva, N. T., Morris, J. H., Holze, H., Kirsch, R., Nastou, K. C., Cuesta-Astroz, Y., Rattei, T., Szklarczyk, D., von Mering, C., & Jensen, L. J. (2023). Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks. Journal of Proteome Research, 22, 637–646. https://doi.org/10.1021/acs.jproteome.2c00651
