Publication: The Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata
The Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata
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Neves, A., Walther, D., Martin-Campos, T., Barbie, V., Bertelli, C., Blanc, D., Bouchet, G., Erard, F., Greub, G., Hirsch, H. H., Huber, M., Kaiser, L., Leib, S. L., Leuzinger, K., Lazarevic, V., Mäusezahl, M., Molina, J., Neher, R. A., Perreten, V., … Egli, A. (2023). The Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata. Microbial Genomics, 9(5), mgen001001. https://doi.org/10.1099/mgen.0.001001
Abstract
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Abstract
The Swiss Pathogen Surveillance Platform (SPSP) is a shared secure surveillance platform between human and veterinary medicine, to also include environmental and foodborne isolates. It enables rapid and detailed transmission monitoring and outbreak surveillance of pathogens using whole genome sequencing data and associated metadata. It features controlled data access, complex dynamic queries, dedicated dashboards and automated data sharing with international repositories, providing actionable results for public health and the vision t
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Creators (Authors)
- Neves, Aitana
- Walther, Daniel
- Martin-Campos, Trinidad
- Barbie, Valerie
- Bertelli, Claire
- Blanc, Dominique
- Bouchet, Gérard
- Erard, Frédéric
- Greub, Gilbert
- Hirsch, Hans H
- Kaiser, Laurent
- Leib, Stephen L
- Leuzinger, Karoline
- Lazarevic, Vladimir
- Mäusezahl, Mirjam
- Molina, Jorge
- Neher, Richard A
- Perreten, Vincent
- Ramette, Alban
- Roloff, Tim
- Schrenzel, Jacques
- Seth-Smith, Helena M B
- Terumalai, Dillenn
- Wegner, Fanny
- Egli, Adrian
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Neves, A., Walther, D., Martin-Campos, T., Barbie, V., Bertelli, C., Blanc, D., Bouchet, G., Erard, F., Greub, G., Hirsch, H. H., Huber, M., Kaiser, L., Leib, S. L., Leuzinger, K., Lazarevic, V., Mäusezahl, M., Molina, J., Neher, R. A., Perreten, V., … Egli, A. (2023). The Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata. Microbial Genomics, 9(5), mgen001001. https://doi.org/10.1099/mgen.0.001001
