Publication:

The Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata

Date

Date

Date
2023
Journal Article
Published version
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cris.lastimport.scopus2025-06-22T03:45:30Z
cris.lastimport.wos2025-07-29T01:30:19Z
cris.virtual.orcidhttps://orcid.org/0000-0003-1002-4762
cris.virtual.orcidhttps://orcid.org/0000-0002-0384-0000
cris.virtualsource.orcidd5df134e-965f-4125-94d2-1cc5483553cf
cris.virtualsource.orcid01143dac-2ed0-432d-9305-575ef3005909
dc.contributor.institutionUniversity of Zurich
dc.date.accessioned2023-12-18T10:17:37Z
dc.date.available2023-12-18T10:17:37Z
dc.date.issued2023-05
dc.description.abstract

The Swiss Pathogen Surveillance Platform (SPSP) is a shared secure surveillance platform between human and veterinary medicine, to also include environmental and foodborne isolates. It enables rapid and detailed transmission monitoring and outbreak surveillance of pathogens using whole genome sequencing data and associated metadata. It features controlled data access, complex dynamic queries, dedicated dashboards and automated data sharing with international repositories, providing actionable results for public health and the vision to improve societal well-being and health.

dc.identifier.doi10.1099/mgen.0.001001
dc.identifier.issn2057-5858
dc.identifier.scopus2-s2.0-85159738259
dc.identifier.urihttps://www.zora.uzh.ch/handle/20.500.14742/212200
dc.identifier.wos001041805100009
dc.language.isoeng
dc.subjectantibiotic resistance
dc.subjectbacteria
dc.subjectbioinformatics
dc.subjectdatabase
dc.subjectepidemiology
dc.subjectfungi
dc.subjectmolecular surveillance
dc.subjectoutbreaks
dc.subjectresearch
dc.subjectsequencing
dc.subjecttyping
dc.subjectvirulence
dc.subjectvirus
dc.subject.ddc610 Medicine & health
dc.subject.ddc570 Life sciences; biology
dc.title

The Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata

dc.typearticle
dcterms.accessRightsinfo:eu-repo/semantics/openAccess
dcterms.bibliographicCitation.journaltitleMicrobial Genomics
dcterms.bibliographicCitation.number5
dcterms.bibliographicCitation.originalpublishernameSociety for General Microbiology
dcterms.bibliographicCitation.pagestartmgen001001
dcterms.bibliographicCitation.pmid37171846
dcterms.bibliographicCitation.volume9
dspace.entity.typePublicationen
uzh.contributor.affiliationSwiss Institute of Bioinformatics
uzh.contributor.affiliationSwiss Institute of Bioinformatics
uzh.contributor.affiliationSwiss Institute of Bioinformatics
uzh.contributor.affiliationSwiss Institute of Bioinformatics
uzh.contributor.affiliationCentre Hospitalier Universitaire Vaudois
uzh.contributor.affiliationCentre Hospitalier Universitaire Vaudois
uzh.contributor.affiliationSwiss Institute of Bioinformatics
uzh.contributor.affiliationSwiss Institute of Bioinformatics
uzh.contributor.affiliationCentre Hospitalier Universitaire Vaudois
uzh.contributor.affiliationUniversitätsspital Basel, Universitat Basel
uzh.contributor.affiliationUniversity of Zurich
uzh.contributor.affiliationHôpitaux universitaires de Genève
uzh.contributor.affiliationUniversity of Bern
uzh.contributor.affiliationUniversitätsspital Basel, Universitat Basel
uzh.contributor.affiliationUniversité de Genève
uzh.contributor.affiliationSwiss Federal Office of Public Health
uzh.contributor.affiliationSwiss Institute of Bioinformatics
uzh.contributor.affiliationBiozentrum, Universität Basel, Swiss Institute of Bioinformatics
uzh.contributor.affiliationLa faculté Vetsuisse
uzh.contributor.affiliationUniversity of Bern
uzh.contributor.authorNeves, Aitana
uzh.contributor.authorWalther, Daniel
uzh.contributor.authorMartin-Campos, Trinidad
uzh.contributor.authorBarbie, Valerie
uzh.contributor.authorBertelli, Claire
uzh.contributor.authorBlanc, Dominique
uzh.contributor.authorBouchet, Gérard
uzh.contributor.authorErard, Frédéric
uzh.contributor.authorGreub, Gilbert
uzh.contributor.authorHirsch, Hans H
uzh.contributor.authorHuber, Michael
uzh.contributor.authorKaiser, Laurent
uzh.contributor.authorLeib, Stephen L
uzh.contributor.authorLeuzinger, Karoline
uzh.contributor.authorLazarevic, Vladimir
uzh.contributor.authorMäusezahl, Mirjam
uzh.contributor.authorMolina, Jorge
uzh.contributor.authorNeher, Richard A
uzh.contributor.authorPerreten, Vincent
uzh.contributor.authorRamette, Alban
uzh.contributor.correspondenceYes
uzh.contributor.correspondenceNo
uzh.contributor.correspondenceNo
uzh.contributor.correspondenceNo
uzh.contributor.correspondenceNo
uzh.contributor.correspondenceNo
uzh.contributor.correspondenceNo
uzh.contributor.correspondenceNo
uzh.contributor.correspondenceNo
uzh.contributor.correspondenceNo
uzh.contributor.correspondenceNo
uzh.contributor.correspondenceNo
uzh.contributor.correspondenceNo
uzh.contributor.correspondenceNo
uzh.contributor.correspondenceNo
uzh.contributor.correspondenceNo
uzh.contributor.correspondenceNo
uzh.contributor.correspondenceNo
uzh.contributor.correspondenceNo
uzh.contributor.correspondenceNo
uzh.document.availabilitypublished_version
uzh.eprint.datestamp2023-12-18 10:17:37
uzh.eprint.lastmod2025-07-29 01:50:46
uzh.eprint.statusChange2023-12-18 10:17:37
uzh.harvester.ethYes
uzh.harvester.nbNo
uzh.identifier.doi10.5167/uzh-239640
uzh.jdb.eprintsId43861
uzh.oastatus.unpaywallgold
uzh.oastatus.zoraGold
uzh.publication.citationNeves, Aitana; Walther, Daniel; Martin-Campos, Trinidad; Barbie, Valerie; Bertelli, Claire; Blanc, Dominique; Bouchet, Gérard; Erard, Frédéric; Greub, Gilbert; Hirsch, Hans H; Huber, Michael; Kaiser, Laurent; Leib, Stephen L; Leuzinger, Karoline; Lazarevic, Vladimir; Mäusezahl, Mirjam; Molina, Jorge; Neher, Richard A; Perreten, Vincent; Ramette, Alban; Roloff, Tim; Schrenzel, Jacques; Seth-Smith, Helena M B; Stephan, Roger; Terumalai, Dillenn; Wegner, Fanny; Egli, Adrian (2023). The Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata. Microbial Genomics, 9(5):mgen001001.
uzh.publication.freeAccessAtdoi
uzh.publication.originalworkoriginal
uzh.publication.publishedStatusfinal
uzh.scopus.impact14
uzh.scopus.subjectsEpidemiology
uzh.scopus.subjectsMicrobiology
uzh.scopus.subjectsMolecular Biology
uzh.scopus.subjectsGenetics
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uzh.workflow.eprintid239640
uzh.workflow.fulltextStatuspublic
uzh.workflow.revisions47
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uzh.workflow.sourcePubMed:PMID:37171846
uzh.workflow.statusarchive
uzh.wos.impact14
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Publication available in collections:
Publications of Institute of Medical Microbiology
Publications of Institute of Food Safety and Hygiene
Publications of Institute of Medical Virology