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specL - Prepare Peptide Spectrum Matches for Use in Targeted Proteomics


Trachsel, Christian; Panse, Christian; Grossmann, Jonas (2014). specL - Prepare Peptide Spectrum Matches for Use in Targeted Proteomics. Bioconductor R Package v1.1.13 Bioc 3.0, University of Zurich.

Abstract

specL provides a function for generating spectra libraries which can be used for MRM SRM MS workflows in proteomics. The package provides a BiblioSpec reader, a function which can add the protein information using a FASTA formatted amino acid file, and an export method for using the created library in the Spectronaut software.

Abstract

specL provides a function for generating spectra libraries which can be used for MRM SRM MS workflows in proteomics. The package provides a BiblioSpec reader, a function which can add the protein information using a FASTA formatted amino acid file, and an export method for using the created library in the Spectronaut software.

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Additional indexing

Item Type:Working Paper
Communities & Collections:04 Faculty of Medicine > Functional Genomics Center Zurich
Dewey Decimal Classification:570 Life sciences; biology
610 Medicine & health
Language:English
Date:15 December 2014
Deposited On:24 Feb 2015 16:55
Last Modified:14 Feb 2018 23:13
Series Name:Bioconductor R Package v1.1.13
OA Status:Green
Free access at:Official URL. An embargo period may apply.
Official URL:http://www.bioconductor.org/packages/devel/bioc/html/specL.html

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