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CHIPS: an Extensible Toolbox for Cellular and Hemodynamic Two-Photon Image Analysis


Barrett, Matthew J P; Ferrari, Kim David; Stobart, Jillian L; Holub, Martin; Weber, Bruno (2018). CHIPS: an Extensible Toolbox for Cellular and Hemodynamic Two-Photon Image Analysis. Neuroinformatics, 16(1):145-147.

Abstract

Two-photon microscopy is able to produce exquisite and informative functional images of cells and blood vessels in living animals or tissue,1 especially when combined with genetically-encoded indicators of cellular activity.2 Since these imaging techniques typically produce too much data to analyse manually, a number of automated or semi-automated image analysis approaches have been developed. However, even aside from the algorithms themselves, many factors can complicate analysis workflows.

Abstract

Two-photon microscopy is able to produce exquisite and informative functional images of cells and blood vessels in living animals or tissue,1 especially when combined with genetically-encoded indicators of cellular activity.2 Since these imaging techniques typically produce too much data to analyse manually, a number of automated or semi-automated image analysis approaches have been developed. However, even aside from the algorithms themselves, many factors can complicate analysis workflows.

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Additional indexing

Item Type:Journal Article, refereed, original work
Communities & Collections:04 Faculty of Medicine > Institute of Pharmacology and Toxicology
07 Faculty of Science > Institute of Pharmacology and Toxicology
Dewey Decimal Classification:570 Life sciences; biology
610 Medicine & health
Language:English
Date:2018
Deposited On:01 Feb 2018 12:29
Last Modified:21 Feb 2018 13:06
Publisher:Springer
ISSN:1539-2791
OA Status:Closed
Publisher DOI:https://doi.org/10.1007/s12021-017-9344-y
PubMed ID:28980186

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Content: Accepted Version
Filetype: PDF - Registered users only until 1 February 2019
Size: 289kB
Embargo till: 2019-02-01