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Prequips--an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data


Gehlenborg, N; Yan, W; Lee, I Y; Yoo, H; Nieselt, K; Hwang, D; Aebersold, R; Hood, L (2009). Prequips--an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data. Bioinformatics, 25(5):682-683.

Abstract

Summary: We describe an integrative software platform, Prequips, for comparative proteomics-based systems biology analysis that: (i) integrates all information generated from mass spectrometry (MS)-based proteomics as well as from basic proteomics data analysis tools, (ii) visualizes such information for various proteomic analyses via graphical interfaces and (iii) links peptide and protein abundances to external tools often used in systems biology studies. Availability: http://prequips.sourceforge.net Contact: dhhwang@postech.ac.kr

Abstract

Summary: We describe an integrative software platform, Prequips, for comparative proteomics-based systems biology analysis that: (i) integrates all information generated from mass spectrometry (MS)-based proteomics as well as from basic proteomics data analysis tools, (ii) visualizes such information for various proteomic analyses via graphical interfaces and (iii) links peptide and protein abundances to external tools often used in systems biology studies. Availability: http://prequips.sourceforge.net Contact: dhhwang@postech.ac.kr

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Additional indexing

Item Type:Journal Article, refereed, original work
Communities & Collections:National licences > 142-005
Dewey Decimal Classification:Unspecified
Scopus Subject Areas:Physical Sciences > Statistics and Probability
Life Sciences > Biochemistry
Life Sciences > Molecular Biology
Physical Sciences > Computer Science Applications
Physical Sciences > Computational Theory and Mathematics
Physical Sciences > Computational Mathematics
Language:English
Date:1 March 2009
Deposited On:08 Nov 2018 16:36
Last Modified:31 Jul 2020 02:21
Publisher:Oxford University Press
ISSN:1367-4803
OA Status:Hybrid
Free access at:PubMed ID. An embargo period may apply.
Publisher DOI:https://doi.org/10.1093/bioinformatics/btp005
Related URLs:https://www.swissbib.ch/Search/Results?lookfor=nationallicenceoxford101093bioinformaticsbtp005 (Library Catalogue)
PubMed ID:19129212

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