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Comprehensive quantitative characterization of the human term amnion proteome

Avilla-Royo, Eva; Gegenschatz-Schmid, Katharina; Grossmann, Jonas; Kockmann, Tobias; Zimmermann, Roland; Snedeker, Jess Gerrit; Ochsenbein-Kölble, Nicole; Ehrbar, Martin (2021). Comprehensive quantitative characterization of the human term amnion proteome. Matrix Biology Plus, 12:100084.

Abstract

The loss of fetal membrane (FM) integrity and function at an early time point during pregnancy can have devastating consequences for the fetus and the newborn. However, biomaterials for preventive sealing and healing of FMs are currently non-existing, which can be partly attributed to the current fragmentary knowledge of FM biology. Despite recent advances in proteomics analysis, a robust and comprehensive description of the amnion proteome is currently lacking. Here, by an optimized protein sample preparation and offline fractionation before liquid chromatography coupled to mass spectrometry (LC-MS) analysis, we present a characterization of the healthy human term amnion proteome, which covers more than 40% of the previously reported transcripts in similar RNA sequencing datasets and, with more than 5000 identifications, greatly outnumbers previous reports. Together, beyond providing a basis for the study of compromised and preterm ruptured FMs, this comprehensive human amnion proteome is a stepping-stone for the development of novel healing-inducing biomaterials. The proteomic dataset has been deposited in the ProteomeXchange Consortium with the identifier PXD019410.

Additional indexing

Item Type:Journal Article, refereed, original work
Communities & Collections:04 Faculty of Medicine > University Hospital Zurich > Clinic for Obstetrics
04 Faculty of Medicine > Functional Genomics Center Zurich
04 Faculty of Medicine > Balgrist University Hospital, Swiss Spinal Cord Injury Center
Dewey Decimal Classification:610 Medicine & health
Scopus Subject Areas:Life Sciences > Biophysics
Life Sciences > Biochemistry
Health Sciences > Histology
Life Sciences > Molecular Biology
Life Sciences > Genetics
Life Sciences > Cell Biology
Uncontrolled Keywords:Cell Biology, Genetics, Molecular Biology, Histology, Biochemistry, Biophysics
Language:English
Date:1 December 2021
Deposited On:08 Dec 2021 05:21
Last Modified:16 Dec 2024 04:36
Publisher:Elsevier
ISSN:2590-0285
OA Status:Gold
Free access at:PubMed ID. An embargo period may apply.
Publisher DOI:https://doi.org/10.1016/j.mbplus.2021.100084
PubMed ID:34765964
Project Information:
  • Funder: SNF
  • Grant ID:
  • Project Title:
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  • Licence: Creative Commons: Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)

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