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High-Throughput RPLC-MS/MS Quantification of Short- and Medium-Chain Fatty Acids

Schauer, Stefan; Othman, Alaa (2025). High-Throughput RPLC-MS/MS Quantification of Short- and Medium-Chain Fatty Acids. In: Giera, M. Clinical Metabolomics (Second Edition). New York, NY: Springer (Bücher), 195-207.

Abstract

Short- and medium-chain fatty acids (SMCFA) are monocarboxylic acids with a carbon chain length of 1-12 carbon atoms. They are mainly produced in humans by the gut microbiota, play crucial metabolic roles, are vital for intestinal health, and have multifaceted impact on immune and neurological functions. Accurate detection and quantification of SMCFA in different human biofluids is achieved using 3-nitro phenylhydrazine (3-NPH) derivatization of the free fatty acids followed by reverse phase liquid chromatography (RPLC) separation and detection by tandem mass spectrometry (MS/MS). Here, we describe the simultaneous measurement of 14 SMCFA and lactate in detail. All 3-NPH-SMCFA-hydrazones are separated in less than 5 min with an 8-min total run time (injection-to-injection). Linear dynamic range over 0.1-500 μM is achieved for most SCFAs, while it is 0.05-100 μM for MCFAs. Validation of the procedure depicts good linearity (R2 > 0.98) and repeatability (CV ≤ 20%). The lower limit of detection (LLOD) is 10-30 nM. The lower limit of quantification (LLOQ) is 50-100 nM for most analytes, while it is 0.5 μM for acetate. In conclusion, the method offers several benefits compared to alternative methods regarding throughput, selectivity, sensitivity, and robustness.

Additional indexing

Item Type:Book Section, refereed, original work
Communities & Collections:04 Faculty of Medicine > Functional Genomics Center Zurich
04 Faculty of Medicine > Institute of Experimental Immunology
Dewey Decimal Classification:610 Medicine & health
570 Life sciences; biology
Scopus Subject Areas:Life Sciences > Molecular Biology
Life Sciences > Genetics
Language:English
Date:2025
Deposited On:14 Jan 2025 12:32
Last Modified:28 Jun 2025 03:34
Publisher:Springer (Bücher)
Series Name:Methods in Molecular Biology
Edition:Second Edition
ISSN:1064-3745
ISBN:9781071641156
OA Status:Closed
Publisher DOI:https://doi.org/10.1007/978-1-0716-4116-3_13
PubMed ID:39354310
Other Identification Number:EISBN: 978-1-0716-4116-3

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