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Number of items: 119.

Kouyos, Roger D; Rusert, Peter; Kadelka, Claus; Huber, Michael; Marzel, Alex; Ebner, Hanna; Schanz, Merle; Liechti, Thomas; Friedrich, Nikolas; Braun, Dominique L; Scherrer, Alexandra U; Weber, Jacqueline; Uhr, Therese; Leemann, Christine; Kuster, Herbert; Cavassini, Matthias; Bernasconi, Enos; Hoffmann, Matthias; Calmy, Alexandra; Battegay, Manuel; Rauch, Andri; Yerly, Sabine; Aubert, Vincent; Klimkait, Thomas; Böni, Jürg; Metzner, Karin J; Günthard, Huldrych F; Trkola, Alexandra; Swiss HIV Cohort Study; et al (2018). Tracing HIV-1 strains that imprint broadly neutralizing antibody responses. Nature, 561(7723):406-410.

Braun, Dominique L; Hampel, Benjamin; Kouyos, Roger; Nguyen, Huyen; Shah, Cyril; Flepp, Markus; Stöckle, Marcel; Conen, Anna; Béguelin, Charles; Künzler-Heule, Patrizia; Nicca, Dunja; Schmid, Patrick; Delaloye, Julie; Rougemont, Mathieu; Bernasconi, Enos; Rauch, Andri; Günthard, Huldrych F; Böni, Jürg; Fehr, Jan S; Swiss HIV Cohort Study (2018). High Cure Rates With Grazoprevir-Elbasvir With or Without Ribavirin Guided by Genotypic Resistance Testing Among Human Immunodeficiency Virus/Hepatitis C Virus-coinfected Men Who Have Sex With Men. Clinical Infectious Diseases:Epub ahead of print.

Braun, Dominique L; Hampel, Benjamin; Martin, Eileen; Kouyos, Roger; Kusejko, Katharina; Grube, Christina; Flepp, Markus; Stöckle, Marcel; Conen, Anna; Béguelin, Charles; Schmid, Patrick; Delaloye, Julie; Rougemont, Mathieu; Bernasconi, Enos; Rauch, Andri; Günthard, Huldrych F; Böni, Jürg; Fehr, Jan S; Swiss HIV Cohort Study (2018). High Number of Potential Transmitters Revealed in a Population-based Systematic Hepatitis C Virus RNA Screening Among Human Immunodeficiency Virus-infected Men Who Have Sex With Men. Clinical Infectious Diseases:Epub ahead of print.

Saag, Michael S; Benson, Constance A; Gandhi, Rajesh T; Hoy, Jennifer F; Landovitz, Raphael J; Mugavero, Michael J; Sax, Paul E; Smith, Davey M; Thompson, Melanie A; Buchbinder, Susan P; Del Rio, Carlos; Eron, Joseph J; Fätkenheuer, Gerd; Günthard, Huldrych F; Molina, Jean-Michel; Jacobsen, Donna M; Volberding, Paul A (2018). Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2018 Recommendations of the International Antiviral Society-USA Panel. JAMA : the Journal of the American Medical Association, 320(4):379-396.

Kok, Yik Lim; Schmutz, Stefan; Inderbitzin, Anne; Neumann, Kathrin; Kelley, Audrey; Jörimann, Lisa; Shilaih, Mohaned; Vongrad, Valentina; Kouyos, Roger D; Günthard, Huldrych F; Berens, Christian; Metzner, Karin J (2018). Spontaneous reactivation of latent HIV-1 promoters is linked to the cell cycle as revealed by a genetic-insulators-containing dual-fluorescence HIV-1-based vector. Scientific Reports, 8(1):10204.

Strouvelle, Victoria P; Braun, Dominique L; Vongrad, Valentina; Scherrer, Alexandra U; Kok, Yik Lim; Kouyos, Roger D; Stöckle, Marcel; Rauch, Andri; Darling, Katharine; Hoffmann, Matthias; Metzner, Karin J; Günthard, Huldrych F; Zurich Primary HIV Infection Study; Swiss HIV Cohort Study (2018). No Effect of Pegylated Interferon-α on Total HIV-1 DNA Load in HIV-1/HCV Coinfected Patients. Journal of Infectious Diseases, 217(12):1883-1888.

Kadelka, Claus; Liechti, Thomas; Ebner, Hanna; Schanz, Merle; Rusert, Peter; Friedrich, Nikolas; Stiegeler, Emanuel; Braun, Dominique L; Huber, Michael; Scherrer, Alexandra U; Weber, Jacqueline; Uhr, Therese; Kuster, Herbert; Misselwitz, Benjamin; Cavassini, Matthias; Bernasconi, Enos; Hoffmann, Matthias; Calmy, Alexandra; Battegay, Manuel; Rauch, Andri; Yerly, Sabine; Aubert, Vincent; Klimkait, Thomas; Böni, Jürg; Kouyos, Roger D; Günthard, Huldrych F; Trkola, Alexandra; Swiss HIV Cohort Study (2018). Distinct, IgG1-driven antibody response landscapes demarcate individuals with broadly HIV-1 neutralizing activity. Journal of Experimental Medicine, 215(6):1589-1608.

Liechti, Thomas; Günthard, Huldrych F; Trkola, Alexandra (2018). OMIP-047: High-Dimensional phenotypic characterization of B cells. Cytometry. Part A, 93(6):592-596.

Marzel, Alex; Kusejko, Katharina; Weber, Rainer; Bruggmann, Philip; Rauch, Andri; Roth, Jan A; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Hoffmann, Matthias; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Perreau, Matthieu; Günthard, Huldrych F; Kouyos, Roger D; Swiss HIV Cohort Study (2018). The Cumulative Impact of Harm Reduction on the Swiss HIV Epidemic: Cohort Study, Mathematical Model, and Phylogenetic Analysis. Open Forum Infectious Diseases, 5(5):ofy078.

von Braun, Amrei; Sekaggya-Wiltshire, Christine; Bachmann, Nadine; Ssemwanga, Deogratius; Scherrer, Alexandra U; Nanyonjo, Maria; Kapaata, Anne; Kaleebu, Pontiano; Günthard, Huldrych F; Castelnuovo, Barbara; Fehr, Jan; Kambugu, Andrew (2018). HIV-1 drug resistance among Ugandan adults attending an urban out-patient clinic. Journal of Acquired Immune Deficiency Syndromes, 78(5):566-573.

Mbunkah, Herbert A; Marzel, Alex; Schmutz, Stefan; Kok, Yik Lim; Zagordi, Osvaldo; Shilaih, Mohaned; Nsanwe, Ndi N; Mbu, Eyongetah T; Besong, Lydia M; Sama, Bella A; Orock, Emmanuel; Kouyos, Roger D; Günthard, Huldrych F; Metzner, Karin J (2018). Low prevalence of transmitted HIV-1 drug resistance detected by a dried blood spot (DBS)-based next-generation sequencing (NGS) method in newly diagnosed individuals in Cameroon in the years 2015-16. Journal of Antimicrobial Chemotherapy, 73(7):1917-1929.

Schreiber, Peter W; Schmid, Adrian; Fagagnini, Stefania; Kröger, Arne; Vrugt, Bart; Reiner, Cäcilia S; Boggian, Katia; Schiesser, Marc; Müllhaupt, Beat; Günthard, Huldrych F (2018). MRI and PET-CT Failed to Differentiate Between Hepatic Malignancy and Brucelloma. Open Forum Infectious Diseases, 5(4):ofy052.

Kühnert, Denise; Kouyos, Roger; Shirreff, George; Pečerska, Jūlija; Scherrer, Alexandra U; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Günthard, Huldrych F; Stadler, Tanja; Bonhoeffer, Sebastian; Swiss HIV Cohort Study (2018). Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics. PLoS Pathogens, 14(2):e1006895.

Bertels, Frederic; Marzel, Alex; Leventhal, Gabriel; Mitov, Venelin; Fellay, Jacques; Günthard, Huldrych F; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Battegay, Manuel; Rauch, Andri; Cavassini, Matthias; Calmy, Alexandra; Bernasconi, Enos; Schmid, Patrick; Scherrer, Alexandra U; Müller, Viktor; Bonhoeffer, Sebastian; Kouyos, Roger; Regoes, Roland R; Swiss HIV Cohort Study (2018). Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T Cell Decline and Per-Parasite Pathogenicity. Molecular Biology and Evolution, 35(1):27-37.

BEEHIVE Collaboration; Wymant, Chris; et al; Fellay, Jacques; Günthard, Huldrych F; Kouyos, Roger; van Sighem, Ard; Reiss, Peter (2018). Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver. Virus Evolution, 4(1):vey007.

Swiss HIV Cohort Study; Oxford IBD Cohort Investigators; Kurioka, Ayako; Cosgrove, Cormac; Simoni, Yannick; van Wilgenburg, Bonnie; Geremia, Alessandra; Björkander, Sophia; Sverremark-Ekström, Eva; Thurnheer, Christine; Günthard, Huldrych F; Khanna, Nina; Walker, Lucy Jane; Arancibia-Cárcamo, Carolina V; Newell, Evan W; Willberg, Christian B; Klenerman, Paul; et al (2018). CD161 defines a functionally distinct subset of pro-inflammatory natural killer cells. Frontiers in Immunology, 9:486.

Lodi, Sara; Günthard, Huldrych F; Dunn, David; Garcia, Federico; Logan, Roger; Jose, Sophie; Bucher, Heiner C; Scherrer, Alexandra U; Schneider, Marie-Paule; Egger, Matthias; Glass, Tracy R; Reiss, Peter; van Sighem, Ard; Boender, T Sonia; Phillips, Andrew N; Porter, Kholoud; Hawkins, David; Moreno, Santiago; Monge, Susana; Paraskevis, Dimitrios; Simeon, Metallidis; Vourli, Georgia; Sabin, Caroline; Hernán, Miguel A; HIV-CAUSAL Collaboration* (2018). Effect of immediate initiation of antiretroviral treatment on the risk of acquired HIV drug resistance. AIDS, 32(3):327-335.

Braun, Dominique L; Marzel, Alex; Steffens, Daniela; Schreiber, Peter W; Grube, Christina; Scherrer, Alexandra U; Kouyos, Roger D; Günthard, Huldrych F; Swiss HIV Cohort Study (2018). High rates of subsequent asymptomatic STIs and risky sexual behavior in patients initially presenting with primary HIV-1 infection. Clinical Infectious Diseases, 66(5):735-742.

Wensing, Annemarie M; Calvez, Vincent; Günthard, Huldrych F; Johnson, Victoria A; Paredes, Roger; Pillay, Deenan; Shafer, Robert W; Richman, Douglas D (2017). 2017 Update of the Drug Resistance Mutations in HIV-1. Topics in Antiviral Medicine, 24(4):132-133.

Swiss HIV Cohort Study; Turk, Teja; Bachmann, Nadine; Kadelka, Claus; Böni, Jürg; Yerly, Sabine; Aubert, Vincent; Klimkait, Thomas; Battegay, Manuel; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Furrer, Hansjakob; Hoffmann, Matthias; Günthard, Huldrych F; Kouyos, Roger D; et al (2017). Assessing the danger of self-sustained HIV epidemics in heterosexuals by population based phylogenetic cluster analysis. eLife, 6:e28721.

BEEHIVE Collaboration; Kouyos, Roger; Fellay, Jacques; Günthard, Huldrych F; et al (2017). Correction: Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe. PLoS Biology, 15(7):e1002608.

Bachmann, Nadine; Turk, Teja; Kadelka, Claus; Marzel, Alex; Shilaih, Mohaned; Böni, Jürg; Aubert, Vincent; Klimkait, Thomas; Leventhal, Gabriel E; Günthard, Huldrych F; Kouyos, Roger; Swiss HIV Cohort Study (2017). Parent-offspring regression to estimate the heritability of an HIV-1 trait in a realistic setup. Retrovirology, 14(1):33.

Shilaih, Mohaned; Angst, Daniel C; Marzel, Alex; Bonhoeffer, Sebastian; Günthard, Huldrych F; Kouyos, Roger D (2017). Antibacterial effects of antiretrovirals, potential implications for microbiome studies in HIV. Antiviral Therapy, 23(1):91-94.

Brandenberg, Oliver F; Magnus, Carsten; Rusert, Peter; Günthard, Huldrych F; Regoes, Roland Robert; Trkola, Alexandra (2017). Predicting HIV-1 transmission and antibody neutralization efficacy in vivo from stoichiometric parameters. PLoS Pathogens, 13(5):e1006313.

Béguelin, Charles; Friolet, Nicole; Moradpour, Darius; Sahli, Roland; Suter-Riniker, Franziska; Lüthi, Alexander; Cavassini, Matthias; Günthard, Huldrych F; Battegay, Manuel; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Atkinson, Andrew; Rauch, Andri; Wandeler, Gilles; Swiss HIV Cohort Study (2017). Impact of Tenofovir on Hepatitis Delta Virus Replication in the Swiss Human Immunodeficiency Virus Cohort Study. Clinical Infectious Diseases, 64(9):1275-1278.

Rhee, Soo-Yon; Varghese, Vici; Holmes, Susan P; Van Zyl, Gert U; Steegen, Kim; Boyd, Mark A; Cooper, David A; Nsanzimana, Sabin; Saravanan, Shanmugam; Charpentier, Charlotte; de Oliveira, Tulio; Etiebet, Mary-Ann A; Garcia, Federico; Goedhals, Dominique; Gomes, Perpetua; Günthard, Huldrych F; Hamers, Raph L; Hoffmann, Christopher J; Hunt, Gillian; Jiamsakul, Awachana; Kaleebu, Pontiano; Kanki, Phyllis; Kantor, Rami; Kerschberger, Bernhard; Marconi, Vincent C; D'amour Ndahimana, Jean; Ndembi, Nicaise; Ngo-Giang-Huong, Nicole; Rokx, Casper; Santoro, Maria M; et al (2017). Mutational Correlates of Virological Failure in Individuals Receiving a WHO-Recommended Tenofovir-Containing First-Line Regimen: An International Collaboration. EBioMedicine, 18:225-235.

Rasmussen, David A; Kouyos, Roger; Günthard, Huldrych F; Stadler, Tanja (2017). Phylodynamics on local sexual contact networks. PLoS Computational Biology, 13(3):e1005448.

Beauparlant, David; Rusert, Peter; Magnus, Carsten; Kadelka, Claus; Weber, Jacqueline; Uhr, Therese; Zagordi, Osvaldo; Oberle, Corinna; Duenas-Decamp, Maria J; Clapham, Paul R; Metzner, Karin J; Günthard, Huldrych F; Trkola, Alexandra (2017). Delineating CD4 dependency of HIV-1: Adaptation to infect low level CD4 expressing target cells widens cellular tropism but severely impacts on envelope functionality. PLoS Pathogens, 13(3):e1006255.

Oberle, Corinna S; Magnus, Carsten; Joos, Beda; Rusert, Peter; Beauparlant, David; Kouyos, Roger; Trkola, Alexandra; Metzner, Karin J; Günthard, Huldrych F (2017). Reply to correspondence 'Conserved signatures indicate HIV-1 transmission is under strong selection and thus is not a "stochastic" process' by Gonzalez et al., Retrovirology 2017. Retrovirology, 14(1):14.

Nemeth, Johannes; Vongrad, Valentina; Metzner, Karin J; Strouvelle, Victoria P; Weber, Rainer; Pedrioli, Patrick G A; Aebersold, Ruedi; Günthard, Huldrych F; Collins, Ben C (2017). In vivo and in vitro proteome analysis of Human Immunodeficiency Virus (HIV)-1-infected, human CD4(+) T cells. Molecular & Cellular Proteomics, 16(4 suppl 1):S108-S123.

Combes, Jean-Damien; Clifford, Gary M; Egger, Matthias; Cavassini, Matthias; Hirsch, Hans H; Hauser, Christoph; Calmy, Alexandra; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F; Franceschi, Silvia; Waterboer, Tim; Scherrer, Alexandra U; Swiss HIV Cohort Study (2017). Human papillomavirus antibody response following HAART initiation among MSM. AIDS, 31(4):561-569.

Gueler, Aysel; Moser, André; Calmy, Alexandra; Günthard, Huldrych F; Bernasconi, Enos; Furrer, Hansjakob; Fux, Christoph A; Battegay, Manuel; Cavassini, Matthias; Vernazza, Pietro; Zwahlen, Marcel; Egger, Matthias; Swiss HIV Cohort Study (2017). Life expectancy in HIV-positive persons in Switzerland: matched comparison with general population. AIDS, 31(3):427-436.

Shilaih, Mohaned; Marzel, Alex; Braun, Dominique L; Scherrer, Alexandra U; Kovari, Helen; Young, Jim; Calmy, Alexandra; Darling, Katharine; Battegay, Manuel; Hoffmann, Matthias; Bernasconi, Enos; Thurnheer, Maria C; Günthard, Huldrych F; Kouyos, Roger D; Swiss HIV Cohort Study (2017). Factors associated with syphilis incidence in the HIV-infected in the era of highly active antiretrovirals. Medicine, 96(2):e5849.

Hoenigl, Martin; Braun, Dominique L; Kouyos, Roger; Günthard, Huldrych F; Little, Susan J (2017). Evaluation of the predictive potential of the short acute retroviral syndrome severity score for HIV-1 disease progression in individuals with acute HIV infection. Journal of Acquired Immune Deficiency Syndromes, 74(4):e114-e117.

Béguelin, Charles; Moradpour, Darius; Sahli, Roland; Suter-Riniker, Franziska; Lüthi, Alexander; Cavassini, Matthias; Günthard, Huldrych F; Battegay, Manuel; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Braun, Dominique; Furrer, Hansjakob; Rauch, Andri; Wandeler, Gilles (2017). Hepatitis delta-associated mortality in HIV/HBV-coinfected patients. Journal of Hepatology, 66(2):297-303.

Marzel, Alex; Heinrich, Henriette; Schilliger, Lukas; Fehr, Jan S; Günthard, Huldrych F; Kouyos, Roger; Rampini, Silvana K (2017). Prescription of post-exposure prophylaxis for HIV-1 in the emergency room: correct transmission risk assessment remains challenging. Journal of Acquired Immune Deficiency Syndromes, 74(4):359-366.

Günthard, Huldrych F; Scherrer, Alexandra U (2016). HIV-1 subtype C, tenofovir, and the relationship with treatment failure and drug resistance. Journal of Infectious Diseases, 214(9):1289-1291.

Sauter, Rafael; Huang, Ruizhu; Ledergerber, Bruno; Battegay, Manuel; Bernasconi, Enos; Cavassini, Matthias; Furrer, Hansjakob; Hoffmann, Matthias; Rougemont, Mathieu; Günthard, Huldrych F; Held, Leonhard; Swiss HIV Cohort Study (2016). CD4/CD8 ratio and CD8 counts predict CD4 response in HIV-1-infected drug naive and in patients on cART. Medicine, 95(42):e5094.

Rusert, Peter; Kouyos, Roger D; Kadelka, Claus; Ebner, Hanna; Schanz, Merle; Huber, Michael; Braun, Dominique L; Hozé, Nathanael; Scherrer, Alexandra; Magnus, Carsten; Weber, Jacqueline; Uhr, Therese; Cippa, Valentina; Thorball, Christian W; Kuster, Herbert; Cavassini, Matthias; Bernasconi, Enos; Hoffmann, Matthias; Calmy, Alexandra; Battegay, Manuel; Rauch, Andri; Yerly, Sabine; Aubert, Vincent; Klimkait, Thomas; Böni, Jürg; Fellay, Jacques; Regoes, Roland R; Günthard, Huldrych F; Trkola, Alexandra (2016). Determinants of HIV-1 broadly neutralizing antibody induction. Nature Medicine, 22(11):1260-1267.

Ragonnet-Cronin, Manon L; Shilaih, Mohaned; Günthard, Huldrych F; Hodcroft, Emma B; Böni, Jürg; Fearnhill, Esther; Dunn, David; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Yang, Wan-Lin; Brown, Alison E; Lycett, Samantha J; Kouyos, Roger; Brown, Andrew J Leigh (2016). A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland. Scientific Reports, 6:32251.

Oberle, Corinna S; Joos, Beda; Rusert, Peter; Campbell, Nottania K; Beauparlant, David; Kuster, Herbert; Weber, Jacqueline; Schenkel, Corinne D; Scherrer, Alexandra U; Magnus, Carsten; Kouyos, Roger; Rieder, Philip; Niederöst, Barbara; Braun, Dominique L; Pavlovic, Jovan; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Trkola, Alexandra; Metzner, Karin J; Günthard, Huldrych F (2016). Tracing HIV-1 transmission: envelope traits of HIV-1 transmitter and recipient pairs. Retrovirology, 13(1):62.

Montazeri, Hesam; Kuipers, Jack; Kouyos, Roger; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Günthard, Huldrych F; Beerenwinkel, Niko (2016). Large-scale inference of conjunctive Bayesian networks. Bioinformatics, 32(17):i727-i735.

Shilaih, Mohaned; Marzel, Alex; Scherrer, Alexandra U; Braun, Dominique L; Kovari, Helen; Rougemont, Mathieu; Darling, Katharine; Battegay, Manuel; Hoffmann, Matthias; Bernasconi, Enos; Hirzel, Cedric; Günthard, Huldrych F; Kouyos, Roger D (2016). Dually Active HIV/HBV Antiretrovirals as Protection Against Incident Hepatitis B Infections: Potential for Prophylaxis. Journal of Infectious Diseases, 214(4):599-606.

Martinez-Picado, Javier; McLaren, Paul J; Erkizia, Itziar; Martin, Maureen P; Benet, Susana; Rotger, Margalida; Dalmau, Judith; Ouchi, Dan; Wolinsky, Steven M; Penugonda, Sudhir; Günthard, Huldrych F; Fellay, Jacques; Carrington, Mary; Izquierdo-Useros, Nuria; Telenti, Amalio (2016). Identification of Siglec-1 null individuals infected with HIV-1. Nature Communications, 7:12412.

Scherrer, Alexandra U; Yang, Wan-Lin; Kouyos, Roger D; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Cavassini, Matthias; Battegay, Manuel; Hauser, Christoph; Calmy, Alexandra; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F (2016). Successful Prevention of Transmission of Integrase Resistance in the Swiss HIV Cohort Study. Journal of Infectious Diseases, 214(3):399-402.

Stuehler, Claudia; Bernardini, Claudia; Elzi, Luigia; Stoeckle, Marcel; Zimmerli, Stefan; Furrer, Hansjakob; Günthard, Huldrych F; Leibundgut-Landmann, Salomé; Battegay, Manuel; Khanna, Nina (2016). Immune recovery in HIV-infected patients after Candida esophagitis is impaired despite long-term antiretroviral therapy. AIDS, 30(12):1923-1933.

Günthard, Huldrych F; Saag, Michael S; Benson, Constance A; del Rio, Carlos; Eron, Joseph J; Gallant, Joel E; Hoy, Jennifer F; Mugavero, Michael J; Sax, Paul E; Thompson, Melanie A; Gandhi, Rajesh T; Landovitz, Raphael J; Smith, Davey M; Jacobsen, Donna M; Volberding, Paul A (2016). Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2016 Recommendations of the International Antiviral Society-USA Panel. JAMA : the Journal of the American Medical Association, 316(2):191-210.

Shilaih, Mohaned; Marzel, Alex; Yang, Wan Lin; Scherrer, Alexandra U; Schüpbach, Jörg; Böni, Jürg; Yerly, Sabine; Hirsch, Hans H; Aubert, Vincent; Cavassini, Matthias; Klimkait, Thomas; Vernazza, Pietro L; Bernasconi, Enos; Furrer, Hansjakob; Günthard, Huldrych F; Kouyos, Roger (2016). Genotypic Resistance Tests Sequences Reveal the Role of Marginalized Populations in HIV-1 Transmission in Switzerland. Scientific Reports, 6:27580.

Scherrer, Alexandra U; von Wyl, Viktor; Yang, Wan-Lin; Kouyos, Roger D; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Cavassini, Matthias; Battegay, Manuel; Furrer, Hansjakob; Calmy, Alexandra; Vernazza, Pietro; Bernasconi, Enos; Günthard, Huldrych F (2016). Emergence of acquired HIV-1 drug resistance almost stopped in Switzerland: A 15-year prospective cohort analysis. Clinical Infectious Diseases, 62(10):1310-1317.

De Luca, Andrea; Flandre, Philippe; Dunn, David; Zazzi, Maurizio; Wensing, Annemarie; Santoro, Maria Mercedes; Günthard, Huldrych F; Wittkop, Linda; Kordossis, Theodoros; Garcia, Federico; Castagna, Antonella; Cozzi-Lepri, Alessandro; Churchill, Duncan; De Wit, Stéphane; Brockmeyer, Norbert H; Imaz, Arkaitz; Mussini, Cristina; Obel, Niels; Perno, Carlo Federico; Roca, Bernardino; Reiss, Peter; Schülter, Eugen; Torti, Carlo; van Sighem, Ard; Zangerle, Robert; Descamps, Diane (2016). Improved darunavir genotypic mutation score predicting treatment response for patients infected with HIV-1 subtype B and non-subtype B receiving a salvage regimen. Journal of Antimicrobial Chemotherapy, 71(5):1352-1360.

Seifert, David; Di Giallonardo, Francesca; Töpfer, Armin; Singer, Jochen; Schmutz, Stefan; Günthard, Huldrych F; Beerenwinkel, Niko; Metzner, Karin J (2016). A comprehensive analysis of primer IDs to study heterogeneous HIV-1 populations. Journal of Molecular Biology, 428(1):238-250.

Marzel, Alex; Shilaih, Mohaned; Yang, Wan-Lin; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Braun, Dominique L; Calmy, Alexandra; Furrer, Hansjakob; Cavassini, Matthias; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Günthard, Huldrych F; Kouyos, Roger D; Swiss HIV Cohort Study (2016). HIV-1 transmission during recent infection and during treatment interruptions as major drivers of new infections in the Swiss HIV Cohort Study. Clinical Infectious Diseases, 62(1):115-122.

Aouri, Manel; Barcelo, Catalina; Ternon, Béatrice; Cavassini, Matthias; Anagnostopoulos, Alexia; Yerly, Sabine; Hugues, Henry; Vernazza, Pietro; Günthard, Huldrych F; Buclin, Thierry; Telenti, Amalio; Rotger, Margalida; Decosterd, Laurent A (2016). in vivo profiling and distribution of known and novel phase I and phase II metabolites of efavirenz in plasma, urine, and cerebrospinal fluid. Drug Metabolism and Disposition, 44(1):151-161.

Villandre, Luc; Stephens, David A; Labbe, Aurelie; Günthard, Huldrych F; Kouyos, Roger; Stadler, Tanja (2016). Assessment of overlap of phylogenetic transmission clusters and communities in simple sexual contact networks: applications to HIV-1. PLoS ONE, 11(2):e0148459.

Kok, Yik Lim; Vongrad, Valentina; Shilaih, Mohaned; Di Giallonardo, Francesca; Kuster, Herbert; Kouyos, Roger; Günthard, Huldrych F; Metzner, Karin J (2016). Monocyte-derived macrophages exhibit distinct and more restricted HIV-1 integration site repertoire than CD4(+) T cells. Scientific Reports, 6:24157.

Wensing, Annemarie M; Calvez, Vincent; Günthard, Huldrych F; Johnson, Victoria A; Paredes, Roger; Pillay, Deenan; Shafer, Robert W; Richman, Douglas D (2015). 2015 update of the drug resistance mutations in HIV-1. Topics in Antiviral Medicine, 23(4):132-141.

Glass, Tracy R; Sterne, Jonathan A C; Schneider, Marie-Paule; De Geest, Sabina; Nicca, Dunja; Furrer, Hansjakob; Günthard, Huldrych F; Bernasconi, Enos; Calmy, Alexandra; Rickenbach, Martin; Battegay, Manuel; Bucher, Heiner C (2015). Self-reported nonadherence to antiretroviral therapy as a predictor of viral failure and mortality. AIDS, 29(16):2195-200.

Montazeri, Hesam; Günthard, Huldrych F; Yang, Wan-Lin; Kouyos, Roger; Beerenwinkel, Niko (2015). Estimating the dynamics and dependencies of accumulating mutations with applications to HIV drug resistance. Biostatistics, 16(4):713-726.

Braun, Dominique L; Kouyos, Roger D; Balmer, Belinda; Grube, Christina; Weber, Rainer; Günthard, Huldrych F (2015). Frequency and spectrum of unexpected clinical manifestations of primary HIV-1 infection. Clinical Infectious Diseases, 61(6):1013-1021.

Yang, Wan-Lin; Kouyos, Roger D; Scherrer, Alexandra U; Böni, Jürg; Shah, Cyril; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Hirzel, Cédric; Battegay, Manuel; Cavassini, Matthias; Bernasconi, Enos; Vernazza, Pietro; Held, Leonhard; Ledergerber, Bruno; Günthard, Huldrych F (2015). Assessing efficacy of different nucleos(t)ide backbones in NNRTI-containing regimens in the swiss HIV cohort study. Journal of Antimicrobial Chemotherapy:3323-3331.

Kouyos, Roger D; Günthard, Huldrych F (2015). Editorial commentary: the irreversibility of HIV drug resistance. Clinical Infectious Diseases, 61(5):837-839.

Schreiber, Peter W; Aceto, Leonardo; Korach, Raphael; Marreros, Nelson; Ryser-Degiorgis, Marie-Pierre; Günthard, Huldrych F (2015). Cluster of leptospirosis acquired through river surfing in Switzerland. Open Forum Infectious Diseases, 2(3):ofv102.

Perkins, Molly R; Bartha, Istvan; Timmer, J Katherina; Liebner, Julia C; Wolinsky, David; Wollinsky, David; Günthard, Huldrych F; Hauser, Christoph; Bernasconi, Enos; Hoffmann, Matthias; Calmy, Alexandra; Battegay, Manuel; Telenti, Amalio; Douek, Daniel C; Fellay, Jacques (2015). The interplay between host genetic variation, viral replication, and microbial translocation in untreated HIV-infected individuals. Journal of Infectious Diseases, 212(4):578-584.

Yang, Wan-Lin; Kouyos, Roger; Scherrer, Alexandra U; Böni, Jürg; Shah, Cyril; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Furrer, Hansjakob; Battegay, Manuel; Cavassini, Matthias; Bernasconi, Enos; Vernazza, Pietro; Held, Leonhard; Ledergerber, Bruno; Günthard, Huldrych F; Swiss HIV Cohort Study (2015). Assessing the paradox between transmitted and acquired HIV type 1 drug resistance mutations in the Swiss HIV cohort study from 1998 to 2012. Journal of Infectious Diseases, 212(1):28-38.

Ussher, James E; Phalora, Prabhjeet; Cosgrove, Cormac; Hannaway, Rachel F; Rauch, Andri; Günthard, Huldrych F; Goulder, Philip; Phillips, Rodney E; Willberg, Christian B; Klenerman, Paul (2015). Molecular analyses define Vα7.2-Jα33+ MAIT cell depletion in HIV infection: a case-control study. Medicine, 94(29):e1134.

Boillat-Blanco, Noémie; Darling, Katharine Ea; Schoni-Affolter, Franziska; Vuichard, Danielle; Rougemont, Mathieu; Fulchini, Rosamaria; Bernasconi, Enos; Aouri, Manel; Clerc, Olivier; Furrer, Hansjakob; Günthard, Huldrych F; Cavassini, Matthias (2015). Virological outcome and management of persistent low-level viraemia in HIV-1-infected patients: 11 years of the Swiss HIV Cohort Study. Antiviral Therapy, 20(2):165-175.

Yang, Wan-Lin; Kouyos, Roger D; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Scherrer, Alexandra U; Shilaih, Mohaned; Hinkley, Trevor; Petropoulos, Christos; Bonhoeffer, Sebastian; Günthard, Huldrych F (2015). Persistence of transmitted HIV-1 drug resistance mutations associated with fitness costs and viral genetic backgrounds. PLoS Pathogens, 11(3):e1004722.

Vrancken, Bram; Lemey, Philippe; Rambaut, Andrew; Bedford, Trevor; Longdon, Ben; Günthard, Huldrych F; Suchard, Marc A (2015). Simultaneously estimating evolutionary history and repeated traits phylogenetic signal: applications to viral and host phenotypic evolution. Methods in Ecology and Evolution, 6(1):67-82.

Seifert, David; Di Giallonardo, Francesca; Metzner, Karin J; Günthard, Huldrych F; Beerenwinkel, Niko (2015). A framework for inferring fitness landscapes of patient-derived viruses using quasispecies theory. Genetics, 199(1):191-203.

Fitzmaurice, Karen; Hurst, Jacob; Dring, Megan; Rauch, Andri; McLaren, Paul J; Günthard, Huldrych F; Gardiner, Clair; Klenerman, Paul (2015). Additive effects of HLA alleles and innate immune genes determine viral outcome in HCV infection. Gut, 64(5):813-819.

Zimmermann, Kathrin; Bastidas, Sonia; Knecht, Leandra; Kuster, Herbert; Vavricka, Stephan R; Günthard, Huldrych F; Oxenius, Annette (2015). Gut commensal microbes do not represent a dominant antigenic source for continuous CD4+T-cell activation during HIV-1 infection. European Journal of Immunology, 45(11):3107-3113.

Vongrad, Valentina; Imig, Jochen; Mohammadi, Pejman; Kishore, Shivendra; Jaskiewicz, Lukasz; Hall, Jonathan; Günthard, Huldrych F; Beerenwinkel, Niko; Metzner, Karin J (2015). HIV-1 RNAs are not part of the argonaute 2 associated RNA interference pathway in macrophages. PLoS ONE, 10(7):e0132127.

Cozzi-Lepri, Alessandro; Noguera-Julian, Marc; Di Giallonardo, Francesca; Schuurman, Rob; Däumer, Martin; Aitken, Sue; Ceccherini-Silberstein, Francesca; D'Arminio Monforte, Antonella; Geretti, Anna Maria; Booth, Clare L; Kaiser, Rolf; Michalik, Claudia; Jansen, Klaus; Masquelier, Bernard; Bellecave, Pantxika; Kouyos, Roger D; Castro, Erika; Furrer, Hansjakob; Schultze, Anna; Günthard, Huldrych F; Brun-Vezinet, Francoise; Paredes, Roger; Metzner, Karin J (2015). Low-frequency drug-resistant HIV-1 and risk of virological failure to first-line NNRTI-based ART: a multicohort European case-control study using centralized ultrasensitive 454 pyrosequencing. Journal of Antimicrobial Chemotherapy, 70(3):930-940.

Bayard, Cornelia; Dumoulin, Alexis; Ikenberg, Kristian; Günthard, Huldrych F (2015). Subacute, tetracycline-responsive, granulomatous osteomyelitis in an adult man, consistent with Q fever infection. BMJ Case Reports, 2015:1-4.

Zimmermann, Kathrin; Liechti, Thomas; Haas, Anna; Rehr, Manuela; Trkola, Alexandra; Günthard, Huldrych F; Oxenius, Annette (2015). The orientation of HIV-1 gp120 binding to the CD4 receptor differentially modulates CD4+ T cell activation. Journal of Immunology, 194(2):637-649.

Young, Jim; Rickenbach, Martin; Calmy, Alexandra; Bernasconi, Enos; Staehelin, Cornelia; Schmid, Patrick; Cavassini, Matthias; Battegay, Manuel; Günthard, Huldrych F; Bucher, Heiner C (2015). Transient detectable viremia and the risk of viral rebound in patients from the Swiss HIV Cohort Study. BMC Infectious Diseases, 15(382):online.

Schanz, Merle; Liechti, Thomas; Zagordi, Osvaldo; Miho, Enkelejda; Reddy, Sai T; Günthard, Huldrych F; Trkola, Alexandra; Huber, Michael (2014). High-throughput sequencing of human immunoglobulin variable regions with subtype identification. PLoS ONE, 9(11):e111726.

Bibert, Stéphanie; Wojtowicz, Agnieszka; Taffé, Patrick; Manuel, Oriol; Bernasconi, Enos; Furrer, Hansjakob; Günthard, Huldrych F; Hoffmann, Matthias; Kaiser, Laurent; Osthoff, Michael; Cavassini, Matthias; Bochud, Pierre-Yves (2014). The IFNL3/4 ΔG variant increases susceptibility to cytomegalovirus retinitis among HIV-infected patients. AIDS, 28(13):1885-1889.

von Braun, Amrei; Furrer, Hansjakob; Battegay, Manuel; Calmy, Alexandra; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Weber, Rainer; Günthard, Huldrych F (2014). Antiretrovirale Therapie. Therapeutische Umschau. Revue thérapeutique, 71(8):461-468.

Braun, Dominique L; Nemeth, Johannes; Günthard, Huldrych F (2014). Die akute HIV-Infektion darf nicht verpasst werden. Therapeutische Umschau. Revue thérapeutique, 71(8):469-474.

Weber, Rainer; Günthard, Huldrych F (2014). HIV-Infektion heute. Therapeutische Umschau. Revue thérapeutique, 71(8):433-435.

Günthard, Huldrych F; Aberg, Judith A; Eron, Joseph J; Hoy, Jennifer F; Telenti, Amalio; Benson, Constance A; Burger, David M; Cahn, Pedro; Gallant, Joel E; Glesby, Marshall J; Reiss, Peter; Saag, Michael S; Thomas, David L; Jacobsen, Donna M; Volberding, Paul A (2014). Antiretroviral treatment of adult HIV infection: 2014 recommendations of the International Antiviral Society-USA Panel. JAMA : the Journal of the American Medical Association, 312(4):410-425.

Wensing, Annemarie M; Calvez, Vincent; Günthard, Huldrych F; Johnson, Victoria A; Paredes, Roger; Pillay, Deenan; Shafer, Robert W; Richman, Douglas D (2014). 2014 Update of the drug resistance mutations in HIV-1. Topics in Antiviral Medicine, 22(3):642-650.

Bastidas, Sonia; Graw, Frederik; Smith, Miranda Z; Kuster, Herbert; Günthard, Huldrych F; Oxenius, Annette (2014). CD8+ T cells are activated in an antigen-independent manner in HIV-infected individuals. Journal of Immunology, 192(4):1732-1744.

Braun, Dominique L; Kouyos, Roger; Oberle, Corinna; Grube, Christina; Joos, Beda; Fellay, Jacques; McLaren, Paul J; Kuster, Herbert; Günthard, Huldrych F (2014). A novel acute retroviral syndrome severity score predicts the key surrogate markers for HIV-1 disease progression. PLoS ONE, 9(12):e114111.

Regoes, Roland R; McLaren, Paul J; Battegay, Manuel; Bernasconi, Enos; Calmy, Alexandra; Günthard, Huldrych F; Hoffmann, Matthias; Rauch, Andri; Telenti, Amalio; Fellay, Jacques (2014). Disentangling human tolerance and resistance against HIV. PLoS Biology, 12(9):e1001951.

Abdel-Mohsen, Mohamed; Deng, Xutao; Liegler, Teri; Guatelli, John C; Salama, Mohamed S; Ghanem, Hussam El-Din A; Rauch, Andri; Ledergerber, Bruno; Deeks, Steven G; Günthard, Huldrych F; Wong, Joseph K; Pillai, Satish K (2014). Effects of alpha interferon treatment on intrinsic anti-HIV-1 immunity in vivo. Journal of Virology, 88(1):763-767.

Di Giallonardo, Francesca; Töpfer, Armin; Rey, Melanie; Prabhakaran, Sandhya; Duport, Yannick; Leemann, Christine; Schmutz, Stefan; Campbell, Nottania K; Joos, Beda; Lecca, Maria Rita; Patrignani, Andrea; Däumer, Martin; Beisel, Christian; Rusert, Peter; Trkola, Alexandra; Günthard, Huldrych F; Roth, Volker; Beerenwinkel, Niko; Metzner, Karin J (2014). Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations. Nucleic Acids Research, 42(14):e115.

Brandenberg, Oliver F; Rusert, Peter; Magnus, Carsten; Weber, Jacqueline; Böni, Jürg; Günthard, Huldrych F; Regoes, Roland R; Trkola, Alexandra (2014). Partial rescue of V1V2 mutant infectivity by HIV-1 cell-cell transmission supports the domain’s exceptional capacity for sequence variation. Retrovirology, 11:75.

Althaus, Christian L; Joos, Beda; Perelson, Alan S; Günthard, Huldrych F (2014). Quantifying the turnover of transcriptional subclasses of HIV-1-infected cells. PLoS Computational Biology, 10(10):e1003871.

Abdel-Mohsen, Mohamed; Deng, Xutao; Danesh, Ali; Liegler, Teri; Jacobs, Evan S; Rauch, Andri; Ledergerber, Bruno; Norris, Philip J; Günthard, Huldrych F; Wong, Joseph K; Pillai, Satish K (2014). Role of microRNA modulation in the interferon-α/ribavirin suppression of HIV-1 in vivo. PLoS ONE, 9(10):e109220.

Drescher, Sara M; von Wyl, Viktor; Yang, Wan-Lin; Böni, Jürg; Yerly, Sabine; Shah, Cyril; Aubert, Vincent; Klimkait, Thomas; Taffé, Patrick; Furrer, Hansjakob; Battegay, Manuel; Ambrosioni, Juan; Cavassini, Matthias; Bernasconi, Enos; Vernazza, Pietro L; Ledergerber, Bruno; Günthard, Huldrych F; Kouyos, Roger D (2014). Treatment-Naive individuals are the major source of transmitted HIV-1 drug resistance in men who have sex with men in the Swiss HIV Cohort Study. Clinical Infectious Diseases, 58(2):285-294.

Leventhal, Gabriel E; Günthard, Huldrych F; Bonhoeffer, Sebastian; Stadler, Tanja (2014). Using an epidemiological model for phylogenetic inference reveals density dependence in HIV transmission. Molecular Biology and Evolution, 31(1):6-17.

Mohammadi, Pejman; Desfarges, Sébastien; Bartha, István; Joos, Beda; Zangger, Nadine; Muñoz, Miguel; Günthard, Huldrych F; Beerenwinkel, Niko; Telenti, Amalio; Ciuffi, Angela (2013). 24 hours in the life of HIV-1 in a T cell line. PLoS Pathogens, 9(1):e1003161.

Bartha, István; Carlson, Jonathan M; Brumme, Chanson J; McLaren, Paul J; Brumme, Zabrina L; John, Mina; Haas, David W; Martinez-Picado, Javier; Dalmau, Judith; López-Galíndez, Cecilio; Casado, Concepción; Rauch, Andri; Günthard, Huldrych F; Bernasconi, Enos; Vernazza, Pietro; Klimkait, Thomas; Yerly, Sabine; O'Brien, Stephen J; Listgarten, Jennifer; Pfeifer, Nico; Lippert, Christoph; Fusi, Nicolo; Kutalik, Zoltán; Allen, Todd M; Müller, Viktor; Harrigan, P Richard; Heckerman, David; Telenti, Amalio; Fellay, Jacques (2013). A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control. eLife, 2013(2):e01123.

von Wyl, Viktor; Klimkait, Thomas; Yerly, Sabine; Nicca, Dunja; Furrer, Hansjakob; Cavassini, Matthias; Calmy, Alexandra; Bernasconi, Enos; Böni, Jürg; Aubert, Vincent; Günthard, Huldrych F; Bucher, Heiner C; Glass, Tracy R (2013). Adherence as a predictor of the development of class-specific resistance mutations: the Swiss HIV Cohort Study. PLoS ONE, 8(10):e77691.

Rohrbach, Janine; Stickel, Felix; Schmid, Patrick; Thormann, Wolfgang; Kovari, Helen; Scherrer, Alexandra; Günthard, Huldrych F; Vuichard, Danielle; Cavassini, Matthias; Ambrosioni, Juan; Bernasconi, Enos; Furrer, Hansjakob; Rauch, Andri (2013). Changes in biomarkers of liver disease during successful combination antiretroviral therapy in HIV/HCV-coinfected individuals. Antiviral Therapy, 19(2):149-159.

Rotger, Margalida; Glass, Tracy R; Junier, Thomas; Lundgren, Jens; Neaton, James D; Poloni, Estella S; van 't Wout, Angélique B; Lubomirov, Rubin; Colombo, Sara; Martinez, Raquel; Rauch, Andri; Günthard, Huldrych F; Neuhaus, Jacqueline; Wentworth, Deborah; van Manen, Danielle; Gras, Luuk A; Schuitemaker, Hanneke; Albini, Laura; Torti, Carlo; Jacobson, Lisa P; Li, Xiuhong; Kingsley, Lawrence A; Carli, Federica; Guaraldi, Giovanni; Ford, Emily S; Sereti, Irini; Hadigan, Colleen; Martinez, Esteban; Arnedo, Mireia; Egaña-Gorroño, Lander; Gatell, Jose M; Law, Matthew; Bendall, Courtney; Petoumenos, Kathy; Rockstroh, Jürgen; Wasmuth, Jan-Christian; Kabamba, Kabeya; Delforge, Marc; De Wit, Stephane; Berger, Florian; Mauss, Stefan; de Paz Sierra, Mariana; Losso, Marcelo; Belloso, Waldo H; Leyes, Maria; Campins, Antoni; Mondi, Annalisa; De Luca, Andrea; Bernardino, Ignacio; Barriuso-Iglesias, Mónica; Torrecilla-Rodriguez, Ana; Gonzalez-Garcia, Juan; Arribas, José R; Fanti, Iuri; Gel, Silvia; Puig, Jordi; Negredo, Eugenia; Gutierrez, Mar; Domingo, Pere; Fischer, Julia; Fätkenheuer, Gerd; Alonso-Villaverde, Carlos; Macken, Alan; Woo, James; McGinty, Tara; Mallon, Patrick; Mangili, Alexandra; Skinner, Sally; Wanke, Christine A; Reiss, Peter; Weber, Rainer; Bucher, Heiner C; Fellay, Jacques; Telenti, Amalio; Tarr, Philip E (2013). Contribution of genetic background, traditional risk factors, and HIV-related factors to coronary artery disease events in HIV-positive persons. Clinical Infectious Diseases, 57(1):112-121.

Cosgrove, Cormac; Ussher, James E; Rauch, Andri; Gärtner, Kathleen; Kurioka, Ayako; Hühn, Michael H; Adelmann, Krista; Kang, Yu-Hoi; Fergusson, Joannah R; Simmonds, Peter; Goulder, Philip; Hansen, Ted H; Fox, Julie; Günthard, Huldrych F; Khanna, Nina; Powrie, Fiona; Steel, Alan; Gazzard, Brian; Phillips, Rodney E; Frater, John; Uhlig, Holm; Klenerman, Paul (2013). Early and nonreversible decrease of CD161++ /MAIT cells in HIV infection. Blood, 121(6):951-961.

Anagnostopoulos, Alexia; Rotger, Margalida; Aouri, Manel; Kuster, Stefan P; Telenti, Amalio; Décosterd, Laurent A; Günthard, Huldrych F (2013). Efavirenz intoxication due to a new CYP2B6 constellation. Antiviral Therapy, 18(5):735-738.

Du Pasquier, Renaud A; Jilek, Samantha; Kalubi, Malela; Yerly, Sabine; Fux, Christoph A; Gutmann, Christine; Cusini, Alexia; Günthard, Huldrych F; Cavassini, Matthias; Vernazza, Pietro L (2013). Marked Increase of the Astrocytic Marker S100B in the Cerebrospinal Fluid of HIV-infected Patients on LPV/r-Monotherapy. AIDS (London, England), 27(2):203-210.

Di Giallonardo, Francesca; Zagordi, Osvaldo; Duport, Yannick; Leemann, Christine; Joos, Beda; Künzli-Gontarczyk, Marzanna; Bruggmann, Rémy; Beerenwinkel, Niko; Günthard, Huldrych F; Metzner, Karin J (2013). Next-Generation Sequencing of HIV-1 RNA Genomes: Determination of Error Rates and Minimizing Artificial Recombination. PLoS ONE, 8(9):e74249.

Metzner, Karin J; Scherrer, Alexandra U; Preiswerk, Benjamin; Joos, Beda; von Wyl, Viktor; Leemann, Christine; Rieder, Philip; Braun, Dominique; Grube, Christina; Kuster, Herbert; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Furrer, Hansjakob; Battegay, Manuel; Vernazza, Pietro L; Cavassini, Matthias; Calmy, Alexandra; Bernasconi, Enos; Weber, Rainer; Günthard, Huldrych F (2013). Origin of minority drug-resistant HIV-1 variants in primary HIV-1 infection. Journal of Infectious Diseases, 208(7):1102-1112.

Lubomirov, Rubin; Arab-Alameddine, Mona; Rotger, Margalida; Fayet-Mello, Aurélie; Martinez, Raquel; Guidi, Monia; di Iulio, Julia; Cavassini, Matthias; Günthard, Huldrych F; Furrer, Hansjakob; Marzolini, Catia; Bernasconi, Enos; Calmy, Alexandra; Buclin, Thierry; Decosterd, Laurent A; Csajka, Chantal; Telenti, Amalio (2013). Pharmacogenetics-based population pharmacokinetic analysis of etravirine in HIV-1 infected individuals. Pharmacogenetics and Genomics, 23(1):9-18.

Cusini, Alexia; Ledergerber, Bruno; Widmer, Nicolas; Günthard, Huldrych F (2013). Response to Calcagno comment on "Higher CNS penetration-effectiveness of long-term combination antiretroviral therapy is associated with better HIV-1 viral suppression in cerebrospinal fluid". Journal of Acquired Immune Deficiency Syndromes, 64(2):e14-e15.

Beerenwinkel, Niko; Montazeri, Hesam; Schuhmacher, Heike; Knupfer, Patrick; von Wyl, Viktor; Furrer, Hansjakob; Battegay, Manuel; Hirschel, Bernard; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Yerly, Sabine; Böni, Jürg; Klimkait, Thomas; Cellerai, Cristina; Günthard, Huldrych F (2013). The individualized genetic barrier predicts treatment response in a large cohort of HIV-1 infected patients. PLoS Computational Biology, 9(8):e1003203.

Thompson, Melanie A; Aberg, Judith A; Hoy, Jennifer F; Telenti, Amalio; Benson, Constance; Cahn, Pedro; Eron, Joseph J; Günthard, Huldrych F; Hammer, Scott M; Reiss, Peter; Richman, Douglas D; Rizzardini, Giuliano; Thomas, David L; Jacobsen, Donna M; Volberding, Paul A (2012). Antiretroviral treatment of adult HIV infection: 2012 recommendations of the International Antiviral Society-USA panel. JAMA : the Journal of the American Medical Association, 308(4):387-402.

Abela, Irene A; Berlinger, Livia; Schanz, Merle; Reynell, Lucy; Günthard, Huldrych F; Rusert, Peter; Trkola, Alexandra (2012). Cell-cell transmission enables HIV-1 to evade inhibition by potent CD4bs directed antibodies. PLoS Pathogens, 8(4):e1002634.

Beerenwinkel, Niko; Günthard, Huldrych F; Roth, Volker; Metzner, Karin J (2012). Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data. Frontiers in Microbiology, 3:329.

Glass, Tracy R; Rotger, Margalida; Telenti, Amalio; Decosterd, Laurent; Csajka, Chantal; Bucher, Heiner C; Günthard, Huldrych F; Rickenbach, Martin; Nicca, Dunja; Hirschel, Bernard; Bernasconi, Enos; Wandeler, Gilles; Battegay, Manuel; Marzolini, Catia (2012). Determinants of sustained viral suppression in HIV-infected patients with self-reported poor adherence to antiretroviral therapy. PLoS ONE, 7(1):e29186.

Wandeler, Gilles; Gsponer, Thomas; Bregenzer, Andrea; Günthard, Huldrych F; Clerc, Olivier; Calmy, Alexandra; Stöckle, Marcel; Bernasconi, Enos; Furrer, Hansjakob; Rauch, Andri (2012). Hepatitis C virus infections in the Swiss HIV Cohort Study: a rapidly evolving epidemic. Clinical Infectious Diseases, 55(10):1408-1416.

Leventhal, Gabriel E; Kouyos, Roger; Stadler, Tanja; von Wyl, Viktor; Yerly, Sabine; Böni, Jürg; Cellerai, Cristina; Klimkait, Thomas; Günthard, Huldrych F; Bonhoeffer, Sebastian (2012). Inferring epidemic contact structure from phylogenetic trees. PLoS Computational Biology, 8(3):e1002413.

Scherrer, Alexandra U; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Furrer, Hansjakob; Calmy, Alexandra; Cavassini, Matthias; Elzi, Luigia; Vernazza, Pietro L; Bernasconi, Enos; Ledergerber, Bruno; Günthard, Huldrych F (2012). Long-Lasting Protection of Activity of Nucleoside Reverse Transcriptase Inhibitors and Protease Inhibitors (PIs) by Boosted PI Containing Regimens. PLoS ONE, 7(11):e50307.

Scherrer, Alexandra U; Ledergerber, Bruno; von Wyl, Viktor; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Cellerai, Cristina; Furrer, Hansjakob; Calmy, Alexandra; Cavassini, Matthias; Elzi, Luigia; Vernazza, Pietro L; Bernasconi, Enos; Günthard, Huldrych F (2012). Minor protease inhibitor mutations at baseline do not increase the risk for a virological failure in HIV-1 subtype B infected patients. PLoS ONE, 7(6):e37983.

Arab-Alameddine, Mona; Fayet-Mello, Aurélie; Lubomirov, Rubin; Neely, Michael; di Iulio, Julia; Owen, Andrew; Boffito, Marta; Cavassini, Matthias; Günthard, Huldrych F; Rentsch, Katharina; Buclin, Thierry; Aouri, Manel; Telenti, Amalio; Decosterd, Laurent Arthur; Rotger, Margalida; Csajka, Chantal (2012). Population pharmacokinetic analysis and pharmacogenetics of raltegravir in HIV-positive and healthy individuals. Antimicrobial agents and chemotherapy, 56(6):2959-2966.

Hohlfeld, Sabine K; Günthard, Huldrych F; Zeitz, Jonas; Locher, Pascal; Bachli, Esther (2012). Progressive multi-focal leukoencephalopathy as a rare lethal complication in untreated sarcoidosis. BMJ Case Reports, 2012:online.

Pillai, Satish K; Abdel-Mohsen, Mohamed; Guatelli, John; Skasko, Mark; Monto, Alexander; Fujimoto, Katsuya; Yukl, Steven; Greene, Warner C; Kovari, Helen; Rauch, Andri; Fellay, Jacques; Battegay, Manuel; Hirschel, Bernard; Witteck, Andrea; Bernasconi, Enos; Ledergerber, Bruno; Günthard, Huldrych F; Wong, Joseph K (2012). Role of retroviral restriction factors in the interferon-α-mediated suppression of HIV-1 in vivo. Proceedings of the National Academy of Sciences of the United States of America, 109(8):3035-3040.

Althaus, Claudia F; Vongrad, Valentina; Niederöst, Barbara; Joos, Beda; Di Giallonardo, Francesca; Rieder, Philip; Pavlovic, Jovan; Trkola, Alexandra; Günthard, Huldrych F; Metzner, Karin J; Fischer, Marek (2012). Tailored enrichment strategy detects low abundant small noncoding RNAs in HIV-1 infected cells. Retrovirology, 9:27.

Henn, Matthew R; Boutwell, Christian L; Charlebois, Patrick; Lennon, Niall J; Power, Karen A; Macalalad, Alexander R; Berlin, Aaron M; Malboeuf, Christine M; Ryan, Elizabeth M; Gnerre, Sante; Zody, Michael C; Erlich, Rachel L; Green, Lisa M; Berical, Andrew; Wang, Yaoyu; Casali, Monica; Streeck, Hendrik; Bloom, Allyson K; Dudek, Tim; Tully, Damien; Newman, Ruchi; Axten, Karen L; Gladden, Adrianne D; Battis, Laura; Kemper, Michael; Zeng, Qiandong; Shea, Terrance P; Gujja, Sharvari; Zedlack, Carmen; Gasser, Olivier; Brander, Christian; Hess, Christoph; Günthard, Huldrych F; Brumme, Zabrina L; Brumme, Chanson J; Bazner, Suzane; Rychert, Jenna; Tinsley, Jake P; Mayer, Ken H; Rosenberg, Eric; Pereyra, Florencia; Levin, Joshua Z; Young, Sarah K; Jessen, Heiko; Altfeld, Marcus; Birren, Bruce W; Walker, Bruce D; Allen, Todd M (2012). Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection. PLoS Pathogens, 8(3):e1002529.

This list was generated on Mon Oct 15 23:56:52 2018 CEST.