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Brugger, Silvio D; Kraemer, Julia G; Qi, Weihong; Bomar, Lindsey; Oppliger, Anne; Hilty, Markus (2019). Age-Dependent Dissimilarity of the Nasopharyngeal and Middle Ear Microbiota in Children With Acute Otitis Media. Frontiers in Genetics, 10:555.

Imeri, Faik; Nolan, Karen A; Bapst, Andreas M; Santambrogio, Sara; Abreu-Rodríguez, Irene; Spielmann, Patrick; Pfundstein, Svende; Libertini, Silvana; Crowther, Lisa; Orlando, Ilaria M C; Dahl, Sophie L; Keodara, Anna; Kuo, Willy; Kurtcuoglu, Vartan; Scholz, Carsten C; Qi, Weihong; Hummler, Edith; Hoogewijs, David; Wenger, Roland H (2019). Generation of renal Epo-producing cell lines by conditional gene tagging reveals rapid HIF-2 driven Epo kinetics, cell autonomous feedback regulation, and a telocyte phenotype. Kidney International, 95(2):375-387.

Mika, Moana; Nita, Izabela; Morf, Laura; Qi, Weihong; Beyeler, Seraina; Bernasconi, Eric; Marsland, Benjamin J; Ott, Sebastian R; von Garnier, Christophe; Hilty, Markus (2018). Microbial and host immune factors as drivers of COPD. ERJ Open Research, 4(3):00015-2018.

Qi, Weihong; Cascarano, Maria Chiara; Schlapbach, Ralph; Katharios, Pantelis; Vaughan, Lloyd; Seth-Smith, Helena M B (2018). Ca. Endozoicomonas cretensis: A Novel Fish Pathogen Characterized by Genome Plasticity. Genome Biology and Evolution, 10(6):1363-1374.

Gekenidis, Maria-Theresia; Qi, Weihong; Hummerjohann, Jörg; Zbinden, Reinhard; Walsh, Fiona; Drissner, David (2018). Antibiotic-resistant indicator bacteria in irrigation water: High prevalence of extended-spectrum beta-lactamase (ESBL)-producing Escherichia coli. PLoS ONE, 13(11):e0207857.

Mika, Moana; Maurer, Josua; Korten, Insa; Allemann, Aurélie; Aebi, Suzanne; Brugger, Silvio D; Qi, Weihong; Frey, Urs; Latzin, Philipp; Hilty, Markus (2017). Influence of the pneumococcal conjugate vaccines on the temporal variation of pneumococcal carriage and the nasal microbiota in healthy infants: a longitudinal analysis of a case-control study. Microbiome:5:85.

Taylor-Brown, Alyce; Pillonel, Trestan; Bridle, Andrew; Qi, Weihong; Bachmann, Nathan L; Miller, Terrence L; Greub, Gilbert; Nowak, Barbara; Seth-Smith, Helena M B; Vaughan, Lloyd; Polkinghorne, Adam (2017). Culture-independent genomics of a novel chlamydial pathogen of fish provides new insight into host-specific adaptations utilized by these intracellular bacteria. Environmental Microbiology, 19(5):1899-1913.

Qi, Weihong; Schlapbach, Ralph; Rehrauer, Hubert (2017). RNA-Seq Data Analysis: From Raw Data Quality Control to Differential Expression Analysis. Methods in Molecular Biology, 1669:295-307.

Seth-Smith, Helena M B; Wanninger, Sabrina; Bachmann, Nathan; Marti, Hanna; Qi, Weihong; Donati, Manuela; di Francesco, Antonietta; Polkinghorne, Adam; Borel, Nicole (2017). The chlamydia suis genome exhibits high levels of diversity, plasticity, and mobile antibiotic resistance: comparative genomics of a recent livestock cohort shows influence of treatment regimes. Genome Biology and Evolution, 9(3):750-760.

Mika, Moana; Korten, Insa; Qi, Weihong; Regamey, Nicolas; Frey, Urs; Casaulta, Carmen; Latzin, Philipp; Hilty, Markus; SCILD study group (2016). The nasal microbiota in infants with cystic fibrosis in the first year of life: a prospective cohort study. Lancet Respiratory Medicine, 4(8):627-635.

Seth-Smith, Helena M B; Dourala, Nancy; Fehr, Alexander; Qi, Weihong; Katharios, Pantelis; Ruetten, Maja; Mateos, José M; Nufer, Lisbeth; Weilenmann, Roseline; Ziegler, Urs; Thomson, Nicholas R; Schlapbach, Ralph; Vaughan, Lloyd (2016). Emerging pathogens of gilthead seabream: characterisation and genomic analysis of novel intracellular β-proteobacteria. The ISME journal, 10(7):1791-1803.

Qi, Weihong; Vaughan, Lloyd; Katharios, Pantelis; Schlapbach, Ralph; Seth-Smith, Helena M B (2016). Host-associated genomic features of the novel uncultured intracellular pathogen ca. ichthyocystis revealed by direct sequencing of epitheliocysts. Genome Biology and Evolution, 8(6):1672-1689.

Hatakeyama, Masaomi; Opitz, Lennart; Russo, Giancarlo; Qi, Weihong; Schlapbach, Ralph; Rehrauer, Hubert (2016). SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis. BMC Bioinformatics, 17(1):228.

Katharios, Pantelis; Seth-Smith, Helena MB; Fehr, Alexander; Mateos, José María; Qi, Weihong; Richter, Denis; Nufer, Lisbeth; Ruetten, Maja; Guevara Soto, Maricruz; Ziegler, Urs; Thomson, Nicholas R; Schlapbach, Ralph; Vaughan, Lloyd (2015). Environmental marine pathogen isolation using mesocosm culture of sharpsnout seabream: striking genomic and morphological features of novel Endozoicomonas sp. Scientific Reports, 5:onlie.

Whittington, Camilla M; Griffith, Oliver W; Qi, Weihong; Thompson, Michael B; Wilson, Anthony B (2015). Seahorse brood pouch transcriptome reveals common genes associated with vertebrate pregnancy. Molecular Biology and Evolution, 32(12):3114-3131.

Mika, Moana; Mack, Ines; Korten, Insa; Qi, Weihong; Aebi, Suzanne; Frey, Urs; Latzin, Philipp; Hilty, Markus (2015). Dynamics of the nasal microbiota in infancy: a prospective cohort study. Journal of Allergy and Clinical Immunology, 135(4):905-912.e11.

Norling, Martin; Bishop, Richard P; Pelle, Roger; Qi, Weihong; Henson, Sonal; Drábek, Elliott F; Tretina, Kyle; Odongo, David; Mwaura, Stephen; Njoroge, Thomas; Bongcam-Rudloff, Erik; Daubenberger, Claudia A; Silva, Joana C (2015). The genomes of three stocks comprising the most widely utilized live sporozoite Theileria parva vaccine exhibit very different degrees and patterns of sequence divergence. BMC Genomics, 16(729):online.

Schmidt, Anja; Schmid, Marc W; Klostermeier, Ulrich C; Qi, Weihong; Guthörl, Daniela; Sailer, Christian; Waller, Manuel; Rosenstiel, Philip; Grossniklaus, Ueli (2014). Apomictic and sexual germline development differ with respect to cell cycle, transcriptional, hormonal and epigenetic regulation. PLoS Genetics, 10(7):e1004476.

Spycher, Cornelia; Herman, Emily K; Morf, Laura; Qi, Weihong; Rehrauer, Hubert; Aquino Fournier, Catharine; Dacks, Joel B; Hehl, Adrian B (2013). An ER-directed transcriptional response to unfolded protein stress in the absence of conserved sensor-transducer proteins in Giardia lamblia. Molecular Microbiology, 88(4):754-771.

Bischof, Sylvain; Umhang, Martin; Eicke, Simona; Streb, Sebastian; Qi, Weihong; Zeeman, Samuel C (2013). Cecropia peltata accumulates starch or soluble glycogen by differentially regulating starch biosynthetic genes. Plant Cell, 25(4):1400-1415.

Garzoni, Christian; Brugger, Silvio D; Qi, Weihong; Wasmer, Sarah; Cusini, Alexia; Dumont, Philippe; Gorgievski-Hrisoho, Meri; Mühlemann, Kathrin; von Garnier, Christophe; Hilty, Markus (2013). Microbial communities in the respiratory tract of patients with interstitial lung disease. Thorax, 68(12):1150-1156.

Schicht, Sabine; Qi, Weihong; Poveda, Lucy; Strube, Christina (2013). The predicted secretome and transmembranome of the poultry red mite Dermanyssus gallinae. Parasites & Vectors, 6:259.

Sedeek, Khalid E M; Qi, Weihong; Schauer, Monica A; Gupta, Alok K; Poveda, Lucy; Xu, Shuqing; Liu, Zhong-Jian; Grossniklaus, Ueli; Schiestl, Florian P; Schlüter, Philipp M (2013). Transcriptome and proteome data reveal candidate genes for pollinator attraction in sexually deceptive Orchids. PLoS ONE, 8(5):e64621.

Schicht, Sabine; Qi, Weihong; Poveda, Lucy; Strube, Christina (2013). Whole transcriptome analysis of the poultry red mite Dermanyssus gallinae (De Geer, 1778). Parasitology, 18:1-11.

Filippini, Manuela; Qi, Weihong; Jaenicke, Sebastian; Goesmann, Alexander; Smits, Theo H M; Bagheri, Homayoun C (2012). Genome sequence of the filamentous bacterium Fibrisoma limi BUZ 3T. Journal of Bacteriology, 16(194):4445.

Mugasa, Joseph; Qi, Weihong; Rusch, Sebastian; Rottmann, Matthias; Beck, Hans-Peter (2012). Genetic diversity of expressed Plasmodium falciparum var genes from Tanzanian children with severe malaria. Malaria Journal, 11:230.

Filippini, Manuela; Qi, Weihong; Blom, Jochen; Goesmann, Alexander; Smits, Theo H M; Bagheri, Homayoun C (2012). Genome sequence of Fibrella aestuarina BUZ 2(T), a filamentous marine bacterium. Journal of Bacteriology, 194(13):3555.

Henson, Sonal; Bishop, Richard P; Morzaria, Subhash; Spooner, Paul R; Pelle, Roger; Poveda, Lucy; Ebeling, Martin; Küng, Erich; Certa, Ulrich; Daubenberger, Claudia A; Qi, Weihong (2012). High-resolution genotyping and mapping of recombination and gene conversion in the protozoan Theileria parva using whole genome sequencing. BMC Genomics, 13:503.

Hilty, Markus; Qi, Weihong; Brugger, Silvio D; Frei, Laurence; Agyeman, Philipp; Frey, Pascal M; Aebi, Suzanne; Mühlemann, Kathrin (2012). Nasopharyngeal microbiota in infants with acute otitis media. Journal of Infectious Diseases, 205(7):1048-1055.

This list was generated on Wed Sep 18 11:31:21 2019 CEST.