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Payne, Joshua L; Wagner, Andreas (2019). The causes of evolvability and their evolution. Nature Reviews. Genetics, 20(1):24-38.

Chu, Hoi Yee; Sprouffske, Kathleen; Wagner, Andreas (2018). Assessing the benefits of horizontal gene transfer by laboratory evolution and genome sequencing. BMC Evolutionary Biology, 18(1):54.

Hopf, Matthias Rüdiger (2018). Heiligkeit und Ehre : Die Aufforderung zur imitatio Dei im Heiligkeitsgesetz im Verhältnis zu honor/shame. In: van Oorschot, Jürgen; Wagner, Andreas. Gott und Mensch im Alten Testament : Zum Verhältnis von Gottes- und Menschenbild. Leipzig: Gütersloher Verlagshaus, 139-153.

Aguilar-Rodríguez, José; Wagner, Andreas (2018). Metabolic determinants of enzyme evolution in a genome-scale bacterial metabolic network. Genome Biology and Evolution, 10(11):3076-3088.

Schaerli, Yolanda; Jiménez, Alba; Duarte, José M; Mihajlovic, Ljiljana; Renggli, Julien; Isalan, Mark; Sharpe, James; Wagner, Andreas (2018). Synthetic circuits reveal how mechanisms of gene regulatory networks constrain evolution. Molecular Systems Biology, 14(9):e8102.

San Roman, Magdalena; Wagner, Andreas (2018). An enormous potential for niche construction through bacterial cross-feeding in a homogeneous environment. PLoS Computational Biology, 14(7):e1006340.

Hosseini, Sayed-Rzgar; Wagner, Andreas (2018). Genomic organization underlying deletional robustness in bacterial metabolic systems. Proceedings of the National Academy of Sciences of the United States of America, 115(27):7075-7080.

Aguilar-Rodríguez, José; Peel, Leto; Stella, Massimo; Wagner, Andreas; Payne, Joshua L (2018). The architecture of an empirical genotype-phenotype map. Evolution, 72(6):1242-1260.

Sprouffske, Kathleen; Aguilar-Rodríguez, José; Sniegowski, Paul; Wagner, Andreas (2018). High mutation rates limit evolutionary adaptation in Escherichia coli. PLoS Genetics, 14(4):e1007324.

Payne, Joshua L; Khalid, Fahad; Wagner, Andreas (2018). RNA-mediated gene regulation is less evolvable than transcriptional regulation. PNAS Proceedings of the National Academy of Sciences of the United States of America, 115(15):E3481-E3490.

Bichsel, Manuel; Barbour, A D; Wagner, Andreas (2018). Dynamics of an insertion sequence infection in a spatially structured environment. Journal of Biological Systems, 26(01):133-166.

Catalán, Pablo; Wagner, Andreas; Manrubia, Susanna; Cuesta, José A (2018). Adding levels of complexity enhances robustness and evolvability in a multilevel genotype–phenotype map. Journal of the Royal Society Interface, 15(138):20170516.

Krüger, Thomas (2018). Gottesbilder und Menschenbilder im Buch Hiob. In: van Oorschot, Jürgen; Wagner, Andreas. Gott und Mensch im Alten Testament : zum Verhältnis von Gottes- und Menschenbild. Leipzig: Gütersloher Verlagshaus, 217-232.

Vahdati, Ali R; Wagner, Andreas (2018). Population size affects adaptation in complex ways: simulations on empirical adaptive landscapes. Evolutionary Biology, 45(2):156-169.

Wagner, Andreas (2017). Information theory, evolutionary innovations and evolvability. Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences, 372(1735):0416.

Hochberg, Michael E; Marquet, Pablo A; Boyd, Robert; Wagner, Andreas (2017). Innovation: an emerging focus from cells to societies. Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences, 372(1735):0414.

Hosseini, Sayed-Rzgar; Wagner, Andreas (2017). Constraint and Contingency Pervade the Emergence of Novel Phenotypes in Complex Metabolic Systems. Biophysical Journal, 113(3):690-701.

Bratulic, Sinisa; Toll-Riera, Macarena; Wagner, Andreas (2017). Mistranslation can enhance fitness through purging of deleterious mutations. Nature Communications, 8:15410.

Fortuna, Miguel A; Zaman, Luis; Ofria, Charles; Wagner, Andreas (2017). The genotype-phenotype map of an evolving digital organism. PLoS Computational Biology, 13(2):e1005414.

Aguilar-Rodríguez, José; Payne, Joshua L; Wagner, Andreas (2017). A thousand empirical adaptive landscapes and their navigability. Nature Ecology and Evolution, 1(2):0045.

Blattner, Ariane C; Aguilar-Rodríguez, José; Kränzlin, Marcella; Wagner, Andreas; Lehner, Christian F (2017). Drosophila Nnf1 paralogs are partially redundant for somatic and germ line kinetochore function. Chromosoma, 126(1):145-163.

Vahdati, Ali R; Sprouffske, Kathleen; Wagner, Andreas (2017). Effect of population size and mutation rate on the evolution of RNA sequences on an adaptive landscape determined by RNA folding. International Journal of Biological Sciences, 13(9):1138-1151.

Fortuna, Miguel A; Zaman, Luis; Wagner, Andreas; Bascompte, Jordi (2017). Non-adaptive origins of evolutionary innovations increase network complexity in interacting digital organisms. Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences, 372(1735):431.

Wagner, Andreas (2017). The white-knight hypothesis, or does the environment limit innovations? Trends in Ecology & Evolution, 32(2):131-140.

Hosseini, Sayed-Rzgar; Martin, Olivier C; Wagner, Andreas (2016). Phenotypic innovation through recombination in genome-scale metabolic networks. Proceedings of the Royal Society of London, Series B: Biological Sciences, 283(1839):20161536.

Aguilar-Rodríguez, José; Sabater-Muñoz, Beatriz; Montagud-Martínez, Roser; Berlanga, Víctor; Alvarez-Ponce, David; Wagner, Andreas; Fares, Mario A (2016). The Molecular Chaperone DnaK Is a Source of Mutational Robustness. Genome Biology and Evolution, 8(9):2979-2991.

Vahdati, Ali R; Wagner, Andreas (2016). Parallel or convergent evolution in human population genomic data revealed by genotype networks. BMC Evolutionary Biology, 16:154.

Sprouffske, Kathleen; Wagner, Andreas (2016). Growthcurver: an R package for obtaining interpretable metrics from microbial growth curves. BMC Bioinformatics, 17:172.

Sprouffske, Kathleen; Aguilar-Rodríguez, José; Wagner, Andreas (2016). How Archiving by Freezing Affects the Genome-Scale Diversity ofEscherichia coliPopulations. Genome Biology and Evolution, 8(5):1290-1298.

Wagner, Andreas; Ortman, Scott; Maxfield, Robert (2016). From the primordial soup to self-driving cars: standards and their role in natural and technological innovation. Journal of the Royal Society Interface, 13(115):20151086.

Khalid, Fahad; Aguilar-Rodríguez, José; Wagner, Andreas; Payne, Joshua L (2016). Genonets server-a web server for the construction, analysis and visualization of genotype networks. Nucleic Acids Research, 44(W1):W70-W76.

Toll-Riera, Macarena; San Millan, Alvaro; Wagner, Andreas; MacLean, R Craig (2016). The genomic basis of evolutionary innovation in pseudomonas aeruginosa. PLoS Genetics, 12(5):e1006005.

Hosseini, Sayed-Rzgar; Wagner, Andreas (2016). The potential for non-adaptive origins of evolutionary innovations in central carbon metabolism. BMC Systems Biology, 10:97.

Bilgin Sonay, Tugce; Carvalho, Tiago; Robinson, Mark D; Greminger, Maja P; Krützen, Michael; Comas, David; Highnam, Gareth; Mittelman, David; Sharp, Andrew; Marques-Bonet, Tomàs; Wagner, Andreas (2015). Tandem repeat variation in human and great ape populations and its impact on gene expression divergence. Genome Research, 25(11):1591-1599.

Payne, Joshua L; Wagner, Andreas (2015). Mechanisms of mutational robustness in transcriptional regulation. Frontiers in Genetics:6:322.

Bratulic, Sinisa; Gerber, Florian; Wagner, Andreas (2015). Mistranslation drives the evolution of robustness in TEM-1 β-lactamase. Proceedings of the National Academy of Sciences of the United States of America, 112(41):12758-12763.

Payne, Joshua L; Wagner, Andreas (2015). Function does not follow form in gene regulatory circuits. Scientific Reports, 5(13015):online.

Sabater-Muñoz, Beatriz; Prats-Escriche, Maria; Montagud-Martínez, Roser; López-Cerdán, Adolfo; Toft, Christina; Aguilar-Rodríguez, José; Wagner, Andreas; Fares, Mario A (2015). Fitness trade-offs determine the role of the molecular chaperonin GroEL in buffering mutations. Molecular Biology and Evolution, 32(10):2681-2693.

Wagner, Andreas (2015). Causal drift, robust signaling, and complex disease. PLoS ONE, 10(3):e0118413.

Calcott, Brett; Levy, Arnon; Siegal, Mark L; Soyer, Orkun S; Wagner, Andreas (2015). Engineering and Biology: Counsel for a Continued Relationship. Biological Theory, 10(1):50-59.

Bilgin Sonay, Tugce; Koletou, Malamati; Wagner, Andreas (2015). A survey of tandem repeat instabilities and associated gene expression changes in 35 colorectal cancers. BMC Genomics, 16(702):online.

Hosseini, Sayed-Rzgar; Barve, Aditya; Wagner, Andreas (2015). Exhaustive analysis of a genotype space comprising 1015 central carbon metabolisms reveals an organization conducive to metabolic innovation. PLoS Computational Biology, 11(8):e1004329.

Hayden, Eric J; Bendixsen, Devin P; Wagner, Andreas (2015). Intramolecular phenotypic capacitance in a modular RNA molecule. Proceedings of the National Academy of Sciences of the United States of America, 112(40):12444-12449.

Dall'Olio, Giovanni M; Vahdati, Ali R; Bertranpetit, Jaume; Wagner, Andreas; Laayouni, Hafid (2014). VCF2Networks: applying genotype networks to single-nucleotide variants data. Bioinformatics, 31(3):438-439.

Wagner, Andreas. Science for a Complex World: Andreas Wagner on how life evolves so rapidly. In: Santa fe New Mexican, 27 October 2014, p.1.

Arrival of the Fittest: Solving Evolution's Greatest Puzzle. Edited by: Wagner, Andreas (2014). New York, USA: Penguin Group.

Wagner, Andreas; Rosen, William (2014). Spaces of the possible: Universal Darwinism and the wall between technological and biological innovation. Journal of the Royal Society. Interface, 11(97):20131190.

Wagner, Andreas (2014). A genotype network reveals homoplastic cycles of convergent evolution in influenza A (H3N2) haemagglutinin. Proceedings of the Royal Society of London, Series B: Biological Sciences, 281(1786):online.

Dall'Olio, Giovanni Marco; Bertranpetit, Jaume; Wagner, Andreas; Laayouni, Hafid (2014). Human genome variation and the concept of genotype networks. PLoS ONE, 9(6):e99424.

Payne, Joshua L; Wagner, Andreas (2014). Latent phenotypes pervade gene regulatory circuits. BMC Systems Biology, 8:64.

Barve, Aditya; Hosseini, Sayed-Rzgar; Martin, Olivier C; Wagner, Andreas (2014). Historical contingency and the gradual evolution of metabolic properties in central carbon and genome-scale metabolisms. BMC Systems Biology, 8:48.

Wagner, Andreas; Andriasyan, Vardan; Barve, Aditya (2014). The organization of metabolic genotype space facilitates adaptive evolution in nitrogen metabolism. Journal of Molecular Biochemistry, 3:2-13.

Payne, Joshua L; Wagner, Andreas (2014). The robustness and evolvability of transcription factor binding sites. Science, 343(6173):875-877.

Wagner, Andreas (2014). Mutational robustness accelerates the origin of novel RNA phenotypes through phenotypic plasticity. Biophysical Journal, 106(4):955-965.

Szövényi, Peter; Devos, Nicolas; Weston, David J; Yang, Xiaohan; Hock, Zsofia; Shaw, A Jonathan; Shimizu, Kentaro K; McDaniel, Stuart; Wagner, Andreas (2014). Efficient purging of deleterious mutations in plants with haploid selfing. Genome Biology and Evolution, 6(5):1238-1252.

Göttliche Körper – Göttliche Gefühle: Was leisten anthropomorphe und anthropopathische Götterkonzepte im Alten Orient und im Alten Testament? Edited by: Wagner, Andreas (2014). Fribourg / Göttingen: Academic Press / Vandenhoeck & Ruprecht.

Dhar, Riddhiman; Bergmiller, Tobias; Wagner, Andreas (2014). Increased gene dosage plays a predominant role in the initial stages of evolution of duplicate tem-1 beta lactamase genes. Evolution, 68(6):1775-1791.

Payne, Joshua L; Moore, Jason H; Wagner, Andreas (2014). Robustness, evolvability, and the logic of genetic regulation. Artificial Life, 20(1):111-126.

Hayden, Eric J; Bratulic, Sinisa; Koenig, Iwo; Ferrada, Evandro; Wagner, Andreas (2014). The effects of stabilizing and directional selection on phenotypic and genotypic variation in a population of RNA enzymes. Journal of Molecular Evolution, 78(2):101-108.

Payne, Joshua L; Wagner, Andreas (2013). Constraint and contingency in multifunctional gene regulatory circuits. PLoS Computational Biology, 9(6):e1003071.

Bilgin, Tugce; Kurnaz, Isil Aksan; Wagner, Andreas (2013). Selection shapes the robustness of ligand-binding amino acids. Journal of Molecular Evolution, 76(5):343-349.

Sunnåker, Mikael; Zamora-Sillero, Elias; Dechant, Reinhard; Ludwig, Christina; Busetto, Alberto Giovanni; Wagner, Andreas; Stelling, Joerg (2013). Automatic Generation of Predictive Dynamic Models Reveals Nuclear Phosphorylation as the Key Msn2 Control Mechanism. Science Signaling, 6(277):ra41.

Sabath, Niv; Ferrada, Evandro; Barve, Aditya; Wagner, Andreas (2013). Growth temperature and genome size in bacteria are negatively correlated, suggesting genomic streamlining during thermal adaptation. Genome Biology and Evolution, 5(5):966-977.

Barve, Aditya; Wagner, Andreas (2013). A latent capacity for evolutionary innovation through exaptation in metabolic systems. Nature, 500(7461):203-206.

Bichsel, Manuel; Barbour, A D; Wagner, Andreas (2013). Estimating the fitness effect of an insertion sequence. Journal of Mathematical Biology, 66(1-2):95-114.

Dall'Olio, Giovanni Mardco; Bertranpetit, Jaume; Wagner, Andreas; Laayouni, Hafid (2013). Human genome variation and the concept of genotype networks. 1309.0657, University of Zurich.

Szovenyi, Peter; Ricca, Mariana; Hock, Zsofia; Shaw, Jonathan A; Shimizu, Kentaro K; Wagner, Andreas (2013). Selection is no more efficient in haploid than in diploid life stages of an angiosperm and a moss. Molecular Biology and Evolution, 30(8):1929-1939.

Dhar, Riddhiman; Sägesser, Rudolf; Weikert, Christian; Wagner, Andreas (2013). Yeast adapts to a changing stressful environment by evolving cross-protection and anticipatory gene regulation. Molecular Biology and Evolution, 30(3):573-588.

Hayden, Eric; Weikert, Christian; Wagner, Andreas (2012). Directional selection causes decanalization in a group I ribozyme. PLoS ONE, 7(9):e45351.

Bilgin, Tugce; Wagner, Andreas (2012). Design constraints on a synthetic metabolism. PLoS ONE, 7(6):e39903.

Hayden, Eric; Wagner, Andreas (2012). Environmental change exposes beneficial epistatic interactions in a catalytic RNA. Proceedings of the Royal Society of London, Series B: Biological Sciences, 279(1742):3418-3425.

Wagner, Andreas; Weikert, Christian (2012). Phenotypic constraints and phenotypic hitchhiking in a promiscuous enzyme. Open Evolution Journal, 6:14-28.

Wagner, Andreas (2012). The role of robustness in phenotypic adaptation and innovation. Proceedings of the Royal Society of London, Series B: Biological Sciences, 279(1732):1249-1258.

Barve, Aditya; Matias Rodrigues, João Frederico; Wagner, Andreas (2012). Superessential reactions in metabolic networks. Proceedings of the National Academy of Sciences of the United States of America, 109(18):E1121-E1130.

Matias Rodrigues, João F; Rankin, Daniel; Rossetti, Valentina; Wagner, Andreas; Bagheri, Homayoun C (2012). Differences in cell division rates drive the evolution of terminal and differentiation in microbes. PLoS Computational Biology, 8(4):e1002468.

Ferrada, Evandro; Wagner, Andreas (2012). A comparison of genotype-phenotype maps for RNA and proteins. Biophysical Journal, 102(8):1916-1925.

Sabath, Niv; Wagner, Andreas; Karlin, David (2012). Evolution of viral proteins originated de novo by overprinting. Molecular Biology and Evolution, 29(12):3767-3780.

Wagner, Andreas (2012). High-dimensional adaptive landscapes facilitate evolutionary innovation. In: Svennsson, Erik; Calsbeek, Ryan. The Adaptive Landscape in Evolutionary Biology. Oxford, UK: Oxford University Press, 271-282.

Chen, Bing; Wagner, Andreas (2012). Hsp90 is important for fecundity, longevity, and buffering of cryptic deleterious variation in wild fly populations. BMC Evolutionary Biology, 12:25.

Wagner, Andreas (2012). Metabolic networks and their evolution. In: Soyer, Orkun. Evolutionary Systems Biology. Exeter, UK: Springer, 29-52.

Guo, Baocheng; Zuo, Ming; Wagner, Andreas (2012). Pervasive indels and their evolutionary dynamics after the fish-specific genome duplication. Molecular Biology and Evolution, 29(10):3005-3022.

Bragg, Jason G; Quigg, Antonietta; Raven, John A; Wagner, Andreas (2012). Protein elemental sparing and codon usage bias are correlated among bacteria. Molecular Ecology, 21(10):2480-2487.

de la Chaux, Nicole; Tsuchimatsu, Takashi; Shimizu, Kentaro K; Wagner, Andreas (2012). The predominantly selfing plant Arabidopsis thaliana experienced a recent reduction in transposable element abundance compared to its outcrossing relative Arabidopsis lyrata. Mobile DNA, 3:2.

Wagner, Andreas (2012). The role of randomness in Darwinian evolution. Philosophia Scientiae - Studies in History and Philosophy of Science, 79:95-119.

Krüger, Thomas (2009). Das "Herz" in der alttestamentlichen Anthropologie. In: Wagner, Andreas. Anthropologische Aufbrüche: Alttestamentliche und interdisziplinäre Zugänge zur historischen Anthropologie. Göttingen: Vandenhoeck & Ruprecht, 103-118.

Parallelismus membrorum. Edited by: Wagner, Andreas (2007). Fribourg, Switzerland / Göttingen, Germany: Academic Press / Vandenhoeck & Ruprecht.

Studien zur hebräischen Grammatik. Edited by: Wagner, Andreas (1997). Freiburg, Switzerland / Göttingen, Germany: Universitätsverlag / Vandenhoeck & Ruprecht.

This list was generated on Wed Jun 19 14:46:21 2019 CEST.