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Keck, François; Couton, Marjorie; Altermatt, Florian (2023). Navigating the seven challenges of taxonomic reference databases in metabarcoding analyses. Molecular Ecology Resources, 23(4):742-755.

Wang, Wei; Spiekman, Stephan N F; Zhao, Lijun; Rieppel, Olivier; Scheyer, Torsten M; Fraser, Nicholas C; Li, Chun (2023). A new long‐necked archosauromorph from the Guanling Formation (Anisian, Middle Triassic) of southwestern China and its implications for neck evolution in tanystropheids. Anatomical Record:Epub ahead of print.

Voigt, Fabian F; Reuss, Anna Maria; Naert, Thomas; Hildebrand, Sven; Schaettin, Martina; Hotz, Adriana L; Whitehead, Lachlan; Bahl, Armin; Neuhauss, Stephan C F; Roebroeck, Alard; Stoeckli, Esther T; Lienkamp, Soeren S; Aguzzi, Adriano; Helmchen, Fritjof (2023). Reflective multi-immersion microscope objectives inspired by the Schmidt telescope. Nature Biotechnology:Epub ahead of print.

Kunz, Lukas; Sotiropoulos, Alexandros G; Graf, Johannes; Razavi, Mohammad; Keller, Beat; Müller, Marion C (2023). The broad use of the Pm8 resistance gene in wheat resulted in hypermutation of the AvrPm8 gene in the powdery mildew pathogen. BMC Biology, 21(1):29.

Zhong, Zhenhui; Feng, Suhua; Mansfeld, Ben N; Ke, Yunqing; Qi, Weihong; Lim, Yi‐Wen; Gruissem, Wilhelm; Bart, Rebecca S; Jacobsen, Steven E (2023). Haplotype‐resolved DNA methylome of African cassava genome. Plant Biotechnology Journal, 21(2):247-249.

Keck, François; Altermatt, Florian (2023). Management of DNA reference libraries for barcoding and metabarcoding studies with the R package refdb. Molecular Ecology Resources, 23(2):511-518.

Nguyen, Tieu Ngoc; Chebbi, Imène; Le Fèvre, Raphaël; Guyot, François; Alphandéry, Edouard (2023). Non-pyrogenic highly pure magnetosomes for efficient hyperthermia treatment of prostate cancer. Applied Microbiology and Biotechnology, 107(4):1159-1176.

Swayambhu, Meghna; Kümmerli, Rolf; Arora, Natasha (2023). Microbiome-Based Stain Analyses in Crime Scenes. Applied and Environmental Microbiology, 89(1):e0132522.

Mathis, Nicolas; Allam, Ahmed; Kissling, Lucas; Marquart, Kim Fabiano; Schmidheini, Lukas; Solari, Cristina; Balázs, Zsolt; Krauthammer, Michael; Schwank, Gerald (2023). Predicting prime editing efficiency and product purity by deep learning. Nature Biotechnology:Epub ahead of print.

Casper, Jens; Nicolle, Laura; Willimann, Melanie; Kuzucu, Evrim Ümit; Tran, Alan; Robin, Perrine; Detampel, Pascal; Grisch‐Chan, Hiu Man; Thöny, Beat; Huwyler, Jörg; Gerber‐Lemaire, Sandrine (2023). Core-Shell Structured Chitosan-Polyethylenimine Nanoparticles for Gene Delivery: Improved Stability, Cellular Uptake, and Transfection Efficiency. Macromolecular Bioscience, 23:e2200314.


Fasser, Marie-Rosa; Kuravi, Ramachandra; Bulla, Marian; Snedeker, Jess G; Farshad, Mazda; Widmer, Jonas (2022). A novel approach for tetrahedral-element-based finite element simulations of anisotropic hyperelastic intervertebral disc behavior. Frontiers in Bioengineering and Biotechnology, 10:1034441.

Matamoros-Angles, A; Hervera, A; Soriano, J; Martí, E; Carulla, P; Llorens, F; Nuvolone, M; Aguzzi, Adriano; Ferrer, I; Gruart, A; Delgado-García, J M; Del Río, J A (2022). Analysis of co-isogenic prion protein deficient mice reveals behavioral deficits, learning impairment, and enhanced hippocampal excitability. BMC Biology, 20:17.

Philippi, Michael; Richter, Christian P; Kappen, Marie; Watrinet, Isabelle; Miao, Yi; Runge, Mercedes; Jorde, Lara; Korneev, Sergej; Holtmannspötter, Michael; Kurre, Rainer; Holthuis, Joost C M; Garcia, K Christopher; Plückthun, Andreas; Steinhart, Martin; Piehler, Jacob; You, Changjiang (2022). Biofunctional Nanodot Arrays in Living Cells Uncover Synergistic Co-Condensation of Wnt Signalodroplets. Small, 18(50):2203723.

Mueller, Flavia S; Amport, René; Notter, Tina; Schalbetter, Sina M; Lin, Han-Yu; Garajova, Zuzana; Amini, Parisa; Weber-Stadlbauer, Ulrike; Markkanen, Enni (2022). Deficient DNA base-excision repair in the forebrain leads to a sex-specific anxiety-like phenotype in mice. BMC Biology, 20(1):170.

Pohle, Alexander; Kröger, Björn; Warnock, Rachel C M; King, Andy H; Evans, David H; Aubrechtová, Martina; Cichowolski, Marcela; Fang, Xiang; Klug, Christian (2022). Early cephalopod evolution clarified through Bayesian phylogenetic inference. BMC Biology, 20:88.

Jiang, Jingjing; Ackermann, Meret; Russomanno, Emanuele; Di Costanzo Mata, Aldo; Charbon, Edoardo; Wolf, Martin; Kalyanov, Alexander (2022). Resolution and penetration depth of reflection-mode time-domain near infrared optical tomography using a ToF SPAD camera. Biomedical Optics Express, 13(12):6711-6723.

Karademir, Duygu; Todorova, Vyara; Ebner, Lynn J A; Samardzija, Marijana; Grimm, Christian (2022). Single-cell RNA sequencing of the retina in a model of retinitis pigmentosa reveals early responses to degeneration in rods and cones. BMC Biology, 20(1):86.

García-Martín, Ana Belén; Roder, Thomas; Schmitt, Sarah; Zeeh, Friederike; Bruggmann, Rémy; Perreten, Vincent (2022). Whole-genome analyses reveal a novel prophage and cgSNPs-derived sublineages of Brachyspira hyodysenteriae ST196. BMC Genomics, 23(1):131.

Widmer, Jonas; Aubin, Carl-Eric; van Lenthe, G Harry; Matsukawa, Keitaro (2022). Editorial: Innovations to improve screw fixation in traumatology and orthopedic surgery. Frontiers in Bioengineering and Biotechnology, 10:1094813.

Jeong, Hyobin; Grimes, Karen; Rauwolf, Kerstin K; Bruch, Peter-Martin; Rausch, Tobias; Hasenfeld, Patrick; Benito, Eva; Roider, Tobias; Sabarinathan, Radhakrishnan; Porubsky, David; Herbst, Sophie A; Erarslan-Uysal, Büşra; Jann, Johann-Christoph; Marschall, Tobias; Nowak, Daniel; Bourquin, Jean-Pierre; Kulozik, Andreas E; Dietrich, Sascha; Bornhauser, Beat; Sanders, Ashley D; Korbel, Jan O (2022). Functional analysis of structural variants in single cells using Strand-seq. Nature Biotechnology:Epub ahead of print.

Steiner, Elisabeth; Shilling, Rebecca E; Richter, Anja M; Schmid, Nadine; Fazli, Mustafa; Kaever, Volkhard; Jenal, Urs; Tolker-Nielsen, Tim; Eberl, Leo (2022). The BDSF quorum sensing receptor RpfR regulates Bep exopolysaccharide synthesis in Burkholderia cenocepacia via interaction with the transcriptional regulator BerB. npj Biofilms and Microbiomes, 8:93.

Huber, François; Lang, Hans Peter; Heller, Stefanie; Bielicki, Julia Anna; Gerber, Christoph; Meyer, Ernst; Egli, Adrian (2022). Rapid Bacteria Detection from Patients' Blood Bypassing Classical Bacterial Culturing. Biosensors, 12(11):994.

Georgalis, Georgios L; Szyndlar, Zbigniew (2022). First occurrence of <i>Psammophis</i> (Serpentes) from Europe witnesses another Messinian herpetofaunal dispersal from Africa – biogeographic implications and a discussion of the vertebral morphology of psammophiid snakes. Anatomical Record, 305(11):3263-3282.

Runge, Jan‐Niklas; König, Barbara; Lindholm, Anna K; Bendesky, Andres (2022). Parent‐offspring inference in inbred populations. Molecular Ecology Resources, 22(8):2981-2993.

Clavien, Pierre-Alain; Dutkowski, Philipp; Mueller, Matteo; Eshmuminov, Dilmurodjon; Bautista Borrego, Lucia; Weber, Achim; Muellhaupt, Beat; Sousa Da Silva, Richard X; Burg, Brian R; Rudolf von Rohr, Philipp; Schuler, Martin J; Becker, Dustin; Hefti, Max; Tibbitt, Mark W (2022). Transplantation of a human liver following 3 days of ex situ normothermic preservation. Nature Biotechnology, 40(11):1610-1616.

Guerrero, Julien; Ghayor, Chafik; Bhattacharya, Indranil; Weber, Franz E (2022). Osteoconductivity of bone substitutes with filament-based microarchitectures: Influence of directionality, filament dimension, and distance. International Journal of Bioprinting, 9(1):63-71.

Weber, Rebecca Zoe; Mulders, Geertje; Kaiser, Julia; Tackenberg, Christian; Rust, Ruslan (2022). Deep learning-based behavioral profiling of rodent stroke recovery. BMC Biology, 20:232.

Chen, Kangwei; Liu, Shanqiu; Lau, Yuen‐Yee; Seeger, Stefan (2022). One-Step Synthesis of Dynamically Shaped Stiff Nanorods Using Soft Silicone Materials to Control Water Repulsion and Collection. Small, 18(40):2203820.

Pfister, Barbara; Shields, Jessica M; Kockmann, Tobias; Grossmann, Jonas; Abt, Melanie R; Stadler, Martha; Zeeman, Samuel C (2022). Tuning heterologous glucan biosynthesis in yeast to understand and exploit plant starch diversity. BMC Biology, 20:207.

Santos, Rui; Ástvaldsson, Ásgeir; Pipaliya, Shweta V; Zumthor, Jon Paulin; Dacks, Joel B; Svärd, Staffan; Hehl, Adrian B; Faso, Carmen (2022). Combined nanometric and phylogenetic analysis of unique endocytic compartments in Giardia lamblia sheds light on the evolution of endocytosis in Metamonada. BMC Biology, 20(1):206.

Mattern, Annabelle; Habermann, Sebastian; Zegke, Markus; Wickleder, Mathias Siegfried; Alberto, Roger (2022). High-Yield 99mTc Labeling of Gold Nanoparticles Carrying Atropine and Adrenaline. Bioconjugate Chemistry, 33(9):1741-1749.

Freitag, Patrick C; Brandl, Fabian; Brücher, Dominik; Weiss, Fabian; Dreier, Birgit; Plückthun, Andreas (2022). Modular Adapters Utilizing Binders of Different Molecular Types Expand Cell-Targeting Options for Adenovirus Gene Delivery. Bioconjugate Chemistry, 33(9):1595-1601.

Cornaz, Frédéric; Farshad, Mazda; Widmer, Jonas (2022). Location of pedicle screw hold in relation to bone quality and loads. Frontiers in Bioengineering and Biotechnology, 10:953119.

Hu, Yexing; Lafci, Berkan; Luzgin, Artur; Wang, Hao; Klohs, Jan; Dean-Ben, Xose Luis; Ni, Ruiqing; Razansky, Daniel; Ren, Wuwei (2022). Deep learning facilitates fully automated brain image registration of optoacoustic tomography and magnetic resonance imaging. Biomedical Optics Express, 13(9):4817-4833.

de la Asunción‐Nadal, Victor; Franco, Carlos; Veciana, Andrea; Ning, Shen; Terzopoulou, Anastasia; Sevim, Semih; Chen, Xiang‐Zhong; Gong, De; Cai, Jun; Wendel‐Garcia, Pedro D; Jurado‐Sánchez, Beatriz; Escarpa, Alberto; Puigmartí‐Luis, Josep; Pané, Salvador (2022). MoSBOTs: Magnetically Driven Biotemplated MoS$_2$‐Based Microrobots for Biomedical Applications. Small, 18(33):2203821.

Seiler, Roger; Eppenberger, Patrick; Bickel, Susanne; Rühli, Frank (2022). The importance of the nasopharynx and anterior skull base in excerebration techniques from KV40, a New Kingdom Egyptian site. Anatomical Record, 305(8):1938-1946.

Ni, Ruiqing; Chen, Zhenyue; Deán-Ben, Xosé Luís; Voigt, Fabian F; Kirschenbaum, Daniel; Shi, Gloria; Villois, Alessia; Zhou, Quanyu; Crimi, Alessandro; Arosio, Paolo; Nitsch, Roger M; Nilsson, K Peter R; Aguzzi, Adriano; Helmchen, Fritjof; Klohs, Jan; Razansky, Daniel (2022). Multiscale optical and optoacoustic imaging of amyloid-β deposits in mice. Nature Biomedical Engineering, 6(9):1031-1044.

Götschi, Tobias; Hanimann, Jonas; Schulz, Nicole; Huser, Simon; Held, Victoria; Frey, Walter O; Snedeker, Jess G; Spörri, Jörg (2022). Patellar Tendon Shear Wave Velocity Is Higher and has Different Regional Patterns in Elite Competitive Alpine Skiers than in Healthy Controls. Frontiers in Bioengineering and Biotechnology, 10:858610.

Ren, Wuwei; Li, Linlin; Zhang, Jianru; Vaas, Markus; Klohs, Jan; Ripoll, Jorge; Wolf, Martin; Ni, Ruiqing; Rudin, Markus (2022). Non-invasive visualization of amyloid-beta deposits in Alzheimer amyloidosis mice using magnetic resonance imaging and fluorescence molecular tomography. Biomedical Optics Express, 13(7):3809-3822.

Balestrino, Fabrizio; Bouyer, Jérémy; Vreysen, Marc J B; Veronesi, Eva (2022). Impact of Irradiation on Vector Competence of Aedes aegypti and Aedes albopictus (Diptera: Culicidae) for Dengue and Chikungunya Viruses. Frontiers in Bioengineering and Biotechnology, 10:876400.

Moura, Rita; Borges, Margarida; Oliveira, Dulce; Parente, Marco; Kimmich, Nina; Mascarenhas, Teresa; Natal, Renato (2022). A biomechanical study of the birth position: a natural struggle between mother and fetus. Biomechanics and Modeling in Mechanobiology, 21(3):937-951.

Jacobsen, Julius O B; Baudis, Michael; Baynam, Gareth S; Beckmann, Jacques S; Beltran, Sergi; Buske, Orion J; et al (2022). The GA4GH Phenopacket schema defines a computable representation of clinical data. Nature Biotechnology, 40(6):817-820.

Gara, Edit; Ong, Sang-Ging; Winkler, Johannes; Zlabinger, Katrin; Lukovic, Dominika; Merkely, Bela; Emmert, Maximilian Y; Wolint, Petra; Hoerstrup, Simon P; Gyöngyösi, Mariann; Wu, Joseph C; Pavo, Noemi (2022). Cell-Based HIF1α Gene Therapy Reduces Myocardial Scar and Enhances Angiopoietic Proteome, Transcriptomic and miRNA Expression in Experimental Chronic Left Ventricular Dysfunction. Frontiers in Bioengineering and Biotechnology, 10:767985.

Diederich, Benedict; Müllenbroich, Caroline; Vladimirov, Nikita; Bowman, Richard; Stirling, Julian; Reynaud, Emmanuel G; Andreev, Andrey (2022). CAD we share? Publishing reproducible microscope hardware. Nature Methods, 19(9):1026-1030.

Ugrica, Marko; Gehring, Nicole; Giesbertz, Pieter; Pastor-Arroyo, Eva-Maria; Daniel, Hannelore; Wagner, Carsten A; Rubio-Aliaga, Isabel (2022). Chronic High Phosphate Intake in Mice Affects Macronutrient Utilization and Body Composition. Molecular Nutrition & Food Research, 66(9):2100949.

Gözen, Irep; Köksal, Elif Senem; Põldsalu, Inga; Xue, Lin; Spustova, Karolina; Pedrueza‐Villalmanzo, Esteban; Ryskulov, Ruslan; Meng, Fanda; Jesorka, Aldo (2022). Protocells: Milestones and Recent Advances. Small, 18(18):2106624.

Duffet, Loïc; Kosar, Seher; Panniello, Mariangela; Viberti, Bianca; Bracey, Edward; Zych, Anna D; Radoux-Mergault, Arthur; Zhou, Xuehan; Dernic, Jan; Ravotto, Luca; Tsai, Yuan-Chen; Figueiredo, Marta; Tyagarajan, Shiva K; Weber, Bruno; Stoeber, Miriam; Gogolla, Nadine; Schmidt, Markus H; Adamantidis, Antoine R; Fellin, Tommaso; Burdakov, Denis; Patriarchi, Tommaso (2022). Author Correction: A genetically encoded sensor for in vivo imaging of orexin neuropeptides. Nature Methods, 19(4):505.

Almiñana, C; Dubuisson, F; Bauersachs, Stefan; Royer, E; Mermillod, Pascal; Blesbois, E; Guignot, F (2022). Unveiling how vitrification affects the porcine blastocyst: clues from a transcriptomic study. Journal of Animal Science and Biotechnology, 13:46.

Hochstrasser, Ramon; Hilbi, Hubert (2022). The Legionella Lqs-LvbR Regulatory Network Controls Temperature-Dependent Growth Onset and Bacterial Cell Density. Applied and Environmental Microbiology, 88(5):e0237021.

Saenz-de-Juano, Mara D; Silvestrelli, Giulia; Bauersachs, Stefan; Ulbrich, Susanne E (2022). Determining extracellular vesicles properties and miRNA cargo variability in bovine milk from healthy cows and cows undergoing subclinical mastitis. BMC Genomics, 23:189.

Pestelacci, Sabina; Tzanidakis, Nikolaos; Reichler, Iris M; Balogh, Orsolya (2022). Comparison of two‐dimensional (2D) and three‐dimensional (3D) ultrasonography for gestational ageing in the early to mid‐pregnant bitch. Reproduction in Domestic Animals, 57(3):235-245.

Viéitez, Cristina; Busby, Bede P; Ochoa, David; Mateus, André; Memon, Danish; Galardini, Marco; Yildiz, Umut; Trovato, Matteo; Jawed, Areeb; Geiger, Alexander G; Oborská-Oplová, Michaela; Potel, Clement M; Vonesch, Sibylle C; Szu Tu, Chelsea; Shahraz, Mohammed; Stein, Frank; Steinmetz, Lars M; Panse, Vikram G; Noh, Kyung-Min; Savitski, Mikhail M; Typas, Athanasios; Beltrao, Pedro (2022). High-throughput functional characterization of protein phosphorylation sites in yeast. Nature Biotechnology, 40(3):382-390.

Lipková, Jana; Menze, Bjoern; Wiestler, Benedikt; Koumoutsakos, Petros; Lowengrub, John S (2022). Modelling glioma progression, mass effect and intracranial pressure in patient anatomy. Journal of the Royal Society Interface, 19(188):20210922.

Gaurav, Kumar; Arora, Sanu; Silva, Paula; et al; Sánchez-Martín, Javier; Widrig, Victoria; Keller, Beat (2022). Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement. Nature Biotechnology, 40(3):422-431.

Tao, Yile; Yue, Yang; Qiu, Guangyu; Ji, Zheng; Spillman, Martin; Gai, Zhibo; Chen, Qingfa; Bielecki, Michel; Huber, Michael; Trkola, Alexandra; Wang, Qiyuan; Cao, Junji; Wang, Jing (2022). Comparison of analytical sensitivity and efficiency for SARS-CoV-2 primer sets by TaqMan-based and SYBR Green-based RT-qPCR. Applied Microbiology and Biotechnology, 106(5-6):2207-2218.

Delbrück, Alessia I; Tritten, Yvette; Nanni, Paolo; Heydenreich, Rosa; Mathys, Alexander (2022). Moderate High-Pressure Superdormancy in $\textit{Bacillus}$ Spores: Properties of Superdormant Spores and Proteins Potentially Influencing Moderate High-Pressure Germination. Applied and Environmental Microbiology, 88(4):e0240621.

Tröndle, Kevin; Miotto, Guilherme; Rizzo, Ludovica; Pichler, Roman; Koch, Fritz; Koltay, Peter; Zengerle, Roland; Lienkamp, Soeren Sten; Kartmann, Sabrina; Zimmermann, Stefan (2022). Deep Learning-Assisted Nephrotoxicity Testing with Bioprinted Renal Spheroids. International Journal of Bioprinting, 8(2):528.

Jiang, Jingjing; Di Costanzo Mata, Aldo; Lindner, Scott; Charbon, Edoardo; Wolf, Martin; Kalyanov, Alexander (2022). 2.5 Hz sample rate time-domain near-infrared optical tomography based on SPAD-camera image tissue hemodynamics. Biomedical Optics Express, 13(1):133-146.

Kessler, Camille; Brambilla, Alice; Waldvogel, Dominique; Camenisch, Glauco; Biebach, Iris; Leigh, Deborah M; Grossen, Christine; Croll, Daniel (2022). A robust sequencing assay of a thousand amplicons for the high‐throughput population monitoring of Alpine ibex immunogenetics. Molecular Ecology Resources, 22(1):66-85.

Tavares Pereira, Miguel; Papa, Paula; Reichler, Iris M; Aslan, Selim; Kowalewski, Mariusz P (2022). Luteal expression of factors involved in the metabolism and sensitivity to oestrogens in the dog during pregnancy and in non‐pregnant cycle. Reproduction in Domestic Animals, 57(1):86-97.

Câmara, Diogo Ribeiro; Ibanescu, Iulian; Siuda, Mathias; Bollwein, Heiner (2022). Mitoquinone does not improve sperm cryo‐resistance in bulls. Reproduction in Domestic Animals, 57(1):10-18.

Gegenschatz-Schmid, Katharina; Buzzi, Stefano; Grossmann, Jonas; Roschitzki, Bernd; Urbanet, Riccardo; Heuberger, Roman; Glück, Dorothea; Zucker, Arik; Ehrbar, Martin (2022). Reduced thrombogenicity of surface-treated Nitinol implants steered by altered protein adsorption. Acta Biomaterialia, 137:331-345.

Mossion, Vinciane; Dauphin, Benjamin; Grant, Jason; Kessler, Michael; Zemp, Niklaus; Croll, Daniel (2022). Transcriptome‐wide SNPs for Botrychium lunaria ferns enable fine‐grained analysis of ploidy and population structure. Molecular Ecology Resources, 22(1):254-271.

Schubert, Jasmin; Li, Yanru; Mendes, Marta A; Fei, Danli; Dickinson, Hugh; Moore, Ian; Baroux, Célia (2022). A procedure for Dex-induced gene transactivation in Arabidopsis ovules. Plant Methods, 18:41.

Motta, Sarah E; Zaytseva, Polina; Fioretta, Emanuela S; Lintas, Valentina; Breymann, Christian; Hoerstrup, Simon P; Emmert, Maximilian Y (2022). Endothelial Progenitor Cell-Based in vitro Pre-Endothelialization of Human Cell-Derived Biomimetic Regenerative Matrices for Next-Generation Transcatheter Heart Valves Applications. Frontiers in Bioengineering and Biotechnology, 10:867877.

Giordano, Deborah; Langini, Cassiano; Caflisch, Amedeo; Marabotti, Anna; Facchiano, Angelo (2022). Molecular dynamics analysis of the structural properties of the transglutaminases of Kutzneria albida and Streptomyces mobaraensis. Computational and Structural Biotechnology Journal, 20:3924-3934.

Togni, Reto; Kilchenmann, Andrea; Proffe, Alba; Mullarkey, Joel; Demkó, László; Taylor, William R; Zemp, Roland (2022). Turning in Circles: Understanding Manual Wheelchair Use Towards Developing User-Friendly Steering Systems. Frontiers in Bioengineering and Biotechnology, 10:831528.


Bai, Yu; Caussinus, Emmanuel; Leo, Stefano; Bosshardt, Fritz; Myachina, Faina; Rot, Gregor; Robinson, Mark D; Lehner, Christian F (2021). A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells. BMC Genomics, 22:771.

Milosavljevic, Stefan; Kuo, Tony; Decarli, Samuele; Mohn, Lucas; Sese, Jun; Shimizu, Kentaro K; Shimizu-Inatsugi, Rie; Robinson, Mark D (2021). ARPEGGIO: Automated Reproducible Polyploid EpiGenetic GuIdance workflOw. BMC Genomics, 22:547.

Sailer, Christian; Tiberi, Simone; Schmid, Bernhard; Stöcklin, Jürg; Grossniklaus, Ueli (2021). Apomixis and genetic background affect distinct traits in Hieracium pilosella L. grown under competition. BMC Biology, 19:177.

Hiltpold, Maya; Kadri, Naveen Kumar; Janett, Fredi; Witschi, Ulrich; Schmitz-Hsu, Fritz; Pausch, Hubert (2021). Autosomal recessive loci contribute significantly to quantitative variation of male fertility in a dairy cattle population. BMC Genomics, 22(1):225.

Shchelik, Inga S; Molino, João V D; Gademann, Karl (2021). Biohybrid microswimmers against bacterial infections. Acta Biomaterialia, 136:99-110.

Saikia, Eashan; Läubli, Nino F; Vogler, Hannes; Rüggeberg, Markus; Herrmann, Hans J; Burgert, Ingo; Burri, Jan T; Nelson, Bradley J; Grossniklaus, Ueli; Wittel, Falk K (2021). Correction to: Mechanical factors contributing to the Venus flytrap’s rate-dependent response to stimuli. Biomechanics and Modeling in Mechanobiology, 20(6):2299.

Kaya, Cengiz; Generalovic, Tomas N; Ståhls, Gunilla; Hauser, Martin; et al; Kenis, Marc; Blanckenhorn, Wolf U; Kapun, Martin; Sandrock, Christoph (2021). Global population genetic structure and demographic trajectories of the black soldier fly, Hermetia illucens. BMC Biology, 19:94.

Saikia, Eashan; Läubli, Nino F; Vogler, Hannes; Rüggeberg, Markus; Herrmann, Hans J; Burgert, Ingo; Burri, Jan T; Nelson, Bradley J; Grossniklaus, Ueli; Wittel, Falk K (2021). Mechanical factors contributing to the Venus flytrap’s rate-dependent response to stimuli. Biomechanics and Modeling in Mechanobiology, 20(6):2287-2297.

Pfrengle, Saskia; Neukamm, Judith; et al; Schuenemann, Verena J (2021). Mycobacterium leprae diversity and population dynamics in medieval Europe from novel ancient genomes. BMC Biology, 19:220.

Piazza, Stefano; Campa, Manuela; Pompili, Valerio; Costa, Lorenza Dalla; Salvagnin, Umberto; Nekrasov, Vladimir; Zipfel, Cyril; Malnoy, Mickael (2021). The Arabidopsis pattern recognition receptor EFR enhances fire blight resistance in apple. Horticulture Research, 8:204.

Pipaliya, Shweta V; Santos, Rui; Salas-Leiva, Dayana; Balmer, Erina A; Wirdnam, Corina D; Roger, Andrew J; Hehl, Adrian B; Faso, Carmen; Dacks, Joel B (2021). Unexpected organellar locations of ESCRT machinery in Giardia intestinalis and complex evolutionary dynamics spanning the transition to parasitism in the lineage Fornicata. BMC Biology, 19(1):167.

Cheng, Rongshan; Wang, Huizhi; Jiang, Ziang; Dimitriou, Dimitris; Cheng, Cheng-Kung; Tsai, Tsung-Yuan (2021). The Femoral Tunnel Drilling Angle at 45° Coronal and 45° Sagittal Provided the Lowest Peak Stress and Strain on the Bone Tunnels and Anterior Cruciate Ligament Graft. Frontiers in Bioengineering and Biotechnology, 9:797389.

Cao, Yu; Dever, Katherine; Sivasankaran, Sathesh Kumar; Nguyen, Scott V; Macori, Guerrino; Naithani, Ankita; Gopinath, Gopal R; Tall, Ben; Lehner, Angelika; Stephan, Roger; Srikumar, Shabarinath; Fanning, Séamus (2021). Alterations in the Transcriptional Landscape Allow Differential Desiccation Tolerance in Clinical Cronobacter sakazakii. Applied and Environmental Microbiology, 87(24):e0083021.

Onjong, Hillary Adawo; Ntuli, Victor; Wambui, Joseph; Mwaniki, Mercy; Kamau Njage, Patrick Murigu (2021). Potential Influence of Regulation of the Food Value Chain on Prevalence and Patterns of Antimicrobial Resistance: the Case of Tilapia (Oreochromis niloticus). Applied and Environmental Microbiology, 87(23):e00945-21.

von Arx, Michael; Liechti, Melanie; Connolly, Lukas; Bangerter, Christian; Meier, Michael L; Schmid, Stefan (2021). From Stoop to Squat: A Comprehensive Analysis of Lumbar Loading Among Different Lifting Styles. Frontiers in Bioengineering and Biotechnology, 9:769117.

Germani, Federico; Kellmeyer, Philipp; Wäscher, Sebastian; Biller-Andorno, Nikola (2021). Engineering Minds? Ethical Considerations on Biotechnological Approaches to Mental Health, Well-Being, and Human Flourishing. Trends in Biotechnology, 39(11):1111-1113.

Zimoch, Jakub; Zielinska, Dominika; Michalak-Micka, Katarzyna; Rütsche, Dominic; Böni, Roland; Biedermann, Thomas; Klar, Agnes S (2021). Bio-engineering a prevascularized human tri-layered skin substitute containing a hypodermis. Acta Biomaterialia, 134:215-227.

Antunović, Boris; Blagojević, Bojan; Johler, Sophia; Guldimann, Claudia; Vieira-Pinto, Madalena; Vågsholm, Ivar; Meemken, Diana; Alvseike, Ole; Georgiev, Milen; Alban, Lis (2021). Challenges and opportunities in the implementation of new meat inspection systems in Europe. Trends in Food Science & Technology, 116:460-467.

Leigh, Deborah M; Lischer, Heidi E L; Guillaume, Frédéric; Grossen, Christine; Günther, Torsten (2021). Disentangling adaptation from drift in bottlenecked and reintroduced populations of Alpine ibex. Molecular Ecology Resources, 21(7):2350-2363.

Sudakou, Aleh; Lange, Frédéric; Isler, Helene; Lanka, Pranav; Wojtkiewicz, Stanislaw; Sawosz, Piotr; Ostojic, Daniel; Wolf, Martin; Pifferi, Antonio; Tachtsidis, Ilias; Liebert, Adam; Gerega, Anna (2021). Time-domain NIRS system based on supercontinuum light source and multi-wavelength detection: validation for tissue oxygenation studies. Biomedical Optics Express, 12(10):6629-6650.

Merten, Hannes; Brandl, Fabian; Zimmermann, Martina; Schaefer, Jonas V; Irpinio, Linda; Sand, Kine M K; Nilsen, Jeannette; Andersen, Jan Terje; Zangemeister-Wittke, Uwe; Plückthun, Andreas (2021). Half-life extension of efficiently produced DARPin serum albumin fusions as a function of FcRn affinity and recycling. European Journal of Pharmaceutics and Biopharmaceutics, 167:104-113.

Hooshmandabbasi, Reyhaneh; Kazemian, Ali; Zerbe, Holm; Kowalewski, Mariusz P; Klisch, Karl (2021). Macrophages in bovine term placenta: An ultrastructural and molecular study. Reproduction in Domestic Animals, 56(9):1243-1253.

Fasser, Marie-Rosa; Jokeit, Moritz; Kalthoff, Mirjam; Gomez Romero, David A; Trache, Tudor; Snedeker, Jess G; Farshad, Mazda; Widmer, Jonas (2021). Subject-Specific Alignment and Mass Distribution in Musculoskeletal Models of the Lumbar Spine. Frontiers in Bioengineering and Biotechnology, 9:721042.

Frachon, Léa; Stirling, Shannon A; Schiestl, Florian P; Dudareva, Natalia (2021). Combining biotechnology and evolution for understanding the mechanisms of pollinator attraction. Current Opinion in Biotechnology, 70:213-219.

Ranacher, Peter; Neureiter, Nico; van Gijn, Rik; Sonnenhauser, Barbara; Escher, Anastasia; Weibel, Robert; Muysken, Pieter; Bickel, Balthasar (2021). Contact-tracing in cultural evolution: a Bayesian mixture model to detect geographic areas of language contact. Journal of the Royal Society Interface, 18(181):20201031.

Erb, Matthias; Züst, Tobias; Robert, Christelle Aurélie Maud (2021). Using plant chemistry to improve interactions between plants, herbivores and their natural enemies: challenges and opportunities. Current Opinion in Biotechnology, 70:262-265.

Quiles Pérez, Mario; Martínez Beltrán, Enrique T; López Bernal, Sergio; Huertas Celdran, Alberto; Martínez Pérez, Gregorio (2021). Breaching Subjects’ Thoughts Privacy: A Study with Visual Stimuli and Brain-Computer Interfaces. Journal of Healthcare Engineering, 2021:Article ID 5517637.

Rothgangl, Tanja; Dennis, Melissa K; Lin, Paulo J C; Oka, Rurika; Witzigmann, Dominik; Villiger, Lukas; Qi, Weihong; Hruzova, Martina; Kissling, Lucas; Lenggenhager, Daniela; Borrelli, Costanza; Egli, Sabina; Frey, Nina; Bakker, Noëlle; Walker, John A; Kadina, Anastasia P; Victorov, Denis V; Pacesa, Martin; Kreutzer, Susanne; Kontarakis, Zacharias; Moor, Andreas; Jinek, Martin; Weissman, Drew; Stoffel, Markus; van Boxtel, Ruben; Holden, Kevin; Pardi, Norbert; Thöny, Beat; Häberle, Johannes; Tam, Ying K; Semple, Sean C; Schwank, Gerald (2021). In vivo adenine base editing of PCSK9 in macaques reduces LDL cholesterol levels. Nature Biotechnology, 39(8):949-957.

Lengacher, Raphael; Csucker, Joshua; Hernández-Valdés, Daniel; Spingler, Bernhard; Braband, Henrik; Alberto, Roger (2021). Expanding the Cyclopentadienyl Framework: 99mTc/Re Complexes with Orthogonal Functions for Bioconjugation. Bioconjugate Chemistry, 32(7):1393-1398.

Guillou, Amaury; Earley, Daniel F; Klingler, Simon; Nisli, Eda; Nüesch, Laura J; Fay, Rachael; Holland, Jason P (2021). The Influence of a Polyethylene Glycol Linker on the Metabolism and Pharmacokinetics of a 89Zr-Radiolabeled Antibody. Bioconjugate Chemistry, 32(7):1263-1275.

Ackermans, Nicole L; Winkler, Daniela E; Schulz-Kornas, Ellen; Kaiser, Thomas M; Martin, Louise F; Hatt, Jean-Michel; Clauss, Marcus (2021). Dental wear proxy correlation in a long-term feeding experiment on sheep (Ovis aries). Journal of the Royal Society Interface, 18(180):20210139.

Mitre, Letícia Kuster; Teixeira‐Silva, Natália Sousa; Rybak, Katarzyna; Magalhães, Diogo Maciel; de Souza‐Neto, Reinaldo Rodrigues; Robatzek, Silke; Zipfel, Cyril; de Souza, Alessandra Alves (2021). The Arabidopsis immune receptor EFR increases resistance to the bacterial pathogens Xanthomonas and Xylella in transgenic sweet orange. Plant Biotechnology Journal, 19(7):1294-1296.

Yokota, Masaya; Häffner, Nicola; Kassier, Matthew; Brunner, Matthias; Shambat, Srikanth Mairpady; Brennecke, Fabian; Schniering, Janine; Marques Maggio, Ewerton; Distler, Oliver; Zinkernagel, Annelies Sophie; Maurer, Britta (2021). Staphylococcus aureus impairs dermal fibroblast functions with deleterious effects on wound healing. FASEB Journal, 35(7):e21695.

Larivière, Sara; Paquola, Casey; Park, Bo-Yong; Royer, Jessica; Wang, Yezhou; Benkarim, Oualid; Vos de Wael, Reinder; Valk, Sofie L; Thomopoulos, Sophia I; Kirschner, Matthias; Lewis, Lindsay B; Evans, Alan C; Sisodiya, Sanjay M; McDonald, Carrie R; Thompson, Paul M; Bernhardt, Boris C (2021). The ENIGMA Toolbox: multiscale neural contextualization of multisite neuroimaging datasets. Nature Methods, 18(7):698-700.

Blagojevic, Bojan; Nesbakken, Truls; Alvseike, Ole; Vågsholm, Ivar; Antic, Dragan; Johler, Sophia; Houf, Kurt; Meemken, Diana; Nastasijevic, Ivan; Vieira Pinto, Madalena; Antunovic, Boris; Georgiev, Milen; Alban, Lis (2021). Drivers, opportunities, and challenges of the European risk-based meat safety assurance system. Food Control, 124:107870.

Ren, Wuwei; Cui, Shangbin; Alini, Mauro; Grad, Sibylle; Zhou, Quanyu; Li, Zhen; Razansky, Daniel (2021). Noninvasive multimodal fluorescence and magnetic resonance imaging of whole-organ intervertebral discs. Biomedical Optics Express, 12(6):3214.

Voith von Voithenberg, Lena; Kashyap, Aditya; Opitz, Lennart; Aquino, Catharine; Sykes, Timothy; Nieser, Maike; Petrini, Lorenzo F T; Enrriquez Casimiro, Nadia; van Kooten, Xander F; Biskup, Saskia; Schlapbach, Ralph; Schraml, Peter; Kaigala, Govind V (2021). Mapping Spatial Genetic Landscapes in Tissue Sections through Microscale Integration of Sampling Methodology into Genomic Workflows. Small, 17(23):e2007901.

Passini, Fabian S; Jaeger, Patrick K; Saab, Aiman S; Hanlon, Shawn; Chittim, Nicole A; Arlt, Matthias J; Ferrari, Kim David; Haenni, Dominik; Caprara, Sebastiano; Bollhalder, Maja; Niederöst, Barbara; Horvath, Aron N; Götschi, Tobias; Ma, Shang; Passini-Tall, Bettina; Fucentese, Sandro F; Blache, Ulrich; Silván, Unai; Weber, Bruno; Silbernagel, Karin Grävare; Snedeker, Jess G (2021). Shear-stress sensing by PIEZO1 regulates tendon stiffness in rodents and influences jumping performance in humans. Nature Biomedical Engineering, 5(12):1457-1471.

Weber, Katharina S; Wagener, Karen; Blanco, Miguel; Bauersachs, Stefan; Bollwein, Heiner (2021). A comparative analysis of the intrauterine transcriptome in fertile and subfertile mares using cytobrush sampling. BMC Genomics, 22(1):377.

Randles, Amanda; Wirsching, Hans-Georg; Dean, Jamie A; Cheng, Yu-Kang; Emerson, Samuel; Pattwell, Siobhan S; Holland, Eric C; Michor, Franziska (2021). Computational modelling of perivascular-niche dynamics for the optimization of treatment schedules for glioblastoma. Nature Biomedical Engineering, 5(4):346-359.

Lou, Phing-How; Lucchinetti, Eliana; Wawrzyniak, Paulina; Morsy, Yasser; Wawrzyniak, Marcin; Scharl, Michael; Krämer, Stefanie D; Rogler, Gerhard; Hersberger, Martin; Zaugg, Michael (2021). Choice of Lipid Emulsion Determines Inflammation of the Gut-Liver Axis, Incretin Profile, and Insulin Signaling in a Murine Model of Total Parenteral Nutrition. Molecular Nutrition & Food Research, 65(5):e2000412.

Rogler, Gerhard; Zaugg, Michael (2021). Nutrition-or Lack Thereof-As a Source of Gut Inflammation: Evidence from Basic Science and Clinical Studies. Molecular Nutrition & Food Research, 65(5):e2001086.

Ackermans, Nicole L; Martin, Louise F; Codron, Daryl; Kircher, Patrick R; Richter, Henning; Clauss, Marcus; Hatt, Jean-Michel (2021). Confirmation of a wear‐compensation mechanism in dental roots of ruminants. Anatomical Record, 304(2):425-436.

Villiger, Lukas; Rothgangl, Tanja; Witzigmann, Dominik; Oka, Rurika; Lin, Paulo J C; Qi, Weihong; Janjuha, Sharan; Berk, Christian; Ringnalda, Femke; Beattie, Mitchell B; Stoffel, Markus; Thöny, Beat; Hall, Jonathan; Rehrauer, Hubert; van Boxtel, Ruben; Tam, Ying K; Schwank, Gerald (2021). In vivo cytidine base editing of hepatocytes without detectable off-target mutations in RNA and DNA. Nature Biomedical Engineering, 5(2):179-189.

Tytgat, Hanne L P; Rasinkangas, Pia; Ritari, Jarmo; Reunanen, Justus; Aalvink, Steven; Lin, Chia-Wei; Palva, Airi; Douillard, François P; de Vos, Willem M (2021). Selection and characterization of a SpaCBA pilus-secreting food-grade derivative of Lacticaseibacillus rhamnosus GG. Applied Microbiology and Biotechnology, 105(3):1123-1131.

Pretz, Dominik; Le Foll, Christelle; Rizwan, Mohammed Z; Lutz, Thomas A; Tups, Alexander (2021). Hyperleptinemia as a contributing factor for the impairment of glucose intolerance in obesity. FASEB Journal, 35(2):e21216.

Daryadel, Arezoo; Ruiz, Pedro A; Gehring, Nicole; Stojanovic, Dragana; Ugrica, Marko; Bettoni, Carla; Sabrautzki, Sibylle; Pastor-Arroyo, Eva-Maria; Frey-Wagner, Isabelle; Lorenz-Depiereux, Bettina; Strom, Tim M; de Angelis, Martin Hrabě; Rogler, Gerhard; Wagner, Carsten A; Rubio-Aliaga, Isabel (2021). Systemic Jak1 activation provokes hepatic inflammation and imbalanced FGF23 production and cleavage. FASEB Journal, 35(2):e21302.

Caprara, Sebastiano; Carrillo, Fabio; Snedeker, Jess G; Farshad, Mazda; Senteler, Marco (2021). Automated Pipeline to Generate Anatomically Accurate Patient-Specific Biomechanical Models of Healthy and Pathological FSUs. Frontiers in Bioengineering and Biotechnology, 9:636953.

Poupart, Oriane; Conti, Riccardo; Schmocker, Andreas; Pancaldi, Lucio; Moser, Christophe; Nuss, Katja M; Sakar, Mahmut S; Dobrocky, Tomas; Grützmacher, Hansjörg; Mosimann, Pascal J; Pioletti, Dominique P (2021). Pulsatile Flow-Induced Fatigue-Resistant Photopolymerizable Hydrogels for the Treatment of Intracranial Aneurysms. Frontiers in Bioengineering and Biotechnology, 8:619858.

Rogler, Gerhard; Scharl, Michael; Spalinger, Marianne; Yilmaz, Bahtiyar; Zaugg, Michael; Hersberger, Martin; Schreiner, Philipp; Biedermann, Luc; Herfarth, Hans (2021). Diet and Inflammatory Bowel Disease – What Quality Standards Should be Applied in Clinical and Laboratory Studies? Molecular Nutrition & Food Research, 65(5):2000514.

Keles, Esin; Malama, Eleni; Bozukova, Siyka; Siuda, Mathias; Wyck, Sarah; Witschi, Ulrich; Bauersachs, Stefan; Bollwein, Heinrich (2021). The micro-RNA content of unsorted cryopreserved bovine sperm and its relation to the fertility of sperm after sex-sorting. BMC Genomics, 22(1):30.

Carpine, Roberta; Sieber, Simon (2021). Antibacterial and antiviral metabolites from cyanobacteria: Their application and their impact on human health. Current Research in Biotechnology, 3:65-81.

Sticco, Matthew J; Peña Palomino, Perla A; Lukacsovich, David; Thompson, Brianna L; Földy, Csaba; Ressl, Susanne; Martinelli, David C (2021). C1QL3 promotes cell‐cell adhesion by mediating complex formation between ADGRB3/BAI3 and neuronal pentraxins. FASEB Journal, 35(1):e21194.

Wiebe, Maraike; Pfarrer, Christiane; Górriz Martín, Lara; Schmicke, Marion; Hoedemaker, Martina; Bollwein, Heiner; Heppelmann, Maike (2021). In vitro effects of lipopolysaccharides on bovine uterine contractility. Reproduction in Domestic Animals, 56(1):172-182.

Gysin, Tina; Kowalewski, Mariusz P (2021). The involvement of hypoxia-inducible factor 1α (HIF1α)-stabilising factors in steroidogenic acute regulatory (STAR) protein-dependent steroidogenesis in murine KK1 granulosa cells in vitro. Reproduction, Fertility and Development, 33(18):865-880.

Shi, Xue-Feng; Ji, Bin; Kong, Yanyan; Guan, Yihui; Ni, Ruiqing (2021). Multimodal Contrast Agents for Optoacoustic Brain Imaging in Small Animals. Frontiers in Bioengineering and Biotechnology, 9:746815.


Amaral, Ana R; Chanfana, Cátia; Smith, Brian D; Mansur, Rubaiyat; Collins, Tim; Baldwin, Robert; Minton, Gianna; Parra, Guido J; Krützen, Michael; Jefferson, Thomas A; Karczmarski, Leszek; Guissamulo, Almeida; Brownell, Robert L; Rosenbaum, Howard C (2020). Genomics of Population Differentiation in Humpback Dolphins, Sousa spp. in the Indo-Pacific Ocean. Journal of Heredity, 111(7):652-660.

Neukamm, Judith; Pfrengle, Saskia; Molak, Martyna; Seitz, Alexander; Francken, Michael; Eppenberger, Partick; Avanzi, Charlotte; Reiter, Ella; Urban, Christian; Welte, Beatrix; Stockhammer, Philipp W; Teßmann, Barbara; Herbig, Alexander; Harvati, Katerina; Nieselt, Kay; Krause, Johannes; Schuenemann, Verena J (2020). 2000-year-old pathogen genomes reconstructed from metagenomic analysis of Egyptian mummified individuals. BMC Biology, 18:108.

Heredia-Ponce, Zaira; Gutiérrez-Barranquero, Jose Antonio; Purtschert-Montenegro, Gabriela; Eberl, Leo; Cazorla, Francisco M; de Vicente, Antonio (2020). Biological role of EPS from Pseudomonas syringae pv. syringae UMAF0158 extracellular matrix, focusing on a Psl-like polysaccharide. npj Biofilms and Microbiomes, 6:875.

Fowler, Anna; Galson, Jacob D; Trück, Johannes; Kelly, Dominic F; Lunter, Gerton (2020). Inferring B cell specificity for vaccines using a Bayesian mixture model. BMC Genomics, 21:176.

Morozova, Irina; Öhrström, Lena M; Eppenberger, Patrick; Bode‐Lesniewska, Beata; Gascho, Dominic; Haas, Cordula; Akgül, Gülfirde; Neukamm, Judith; Röthlin, Kim A; Imhof, Alexander; Shved, Natallia; Papageorgopoulou, Christina; Rühli, Frank J (2020). Ongoing tissue changes in an experimentally mummified human leg. Anatomical Record, 303(12):3085-3095.

Clementi, Elena; Inglin, Larissa; Beebe, Erin; Gsell, Corina; Garajova, Zuzana; Markkanen, Enni (2020). Persistent DNA damage triggers activation of the integrated stress response to promote cell survival under nutrient restriction. BMC Biology, 18(1):36.

Lopes, Patricia C; König, Barbara (2020). Wild mice with different social network sizes vary in brain gene expression. BMC Genomics, 21:506.

Patriarchi, Tommaso; Mohebi, Ali; Sun, Junqing; Marley, Aaron; Liang, Ruqiang; Dong, Chunyang; Puhger, Kyle; Mizuno, Grace Or; Davis, Carolyn M; Wiltgen, Brian; von Zastrow, Mark; Berke, Joshua D; Tian, Lin (2020). An expanded palette of dopamine sensors for multiplex imaging in vivo. Nature Methods, 17(11):1147-1155.

Dutta, Rahul; Mandal, Subhamoy; Lin, Hsiao-Chun Amy; Raz, Tal; Kind, Alexander; Schnieke, Angelika; Razansky, Daniel (2020). Brilliant cresyl blue enhanced optoacoustic imaging enables non-destructive imaging of mammalian ovarian follicles for artificial reproduction. Journal of the Royal Society Interface, 17(172):20200776.

Carradori, Dario; Chen, Hsintsung; Werner, Beat; Shah, Aagam S; Leonardi, Chiara; Usuelli, Mattia; Mezzenga, Raffaele; Platt, Frances; Leroux, Jean‐Christophe (2020). Investigating the Mechanism of Cyclodextrins in the Treatment of Niemann‐Pick Disease Type C Using Crosslinked 2‐Hydroxypropyl‐β‐cyclodextrin. Small, 16(46):2004735.

Boccia, Lavinia; Le Foll, Christelle; Lutz, Thomas A (2020). Noradrenaline signaling in the LPBN mediates amylin's and salmon calcitonin's hypophagic effect in male rats. FASEB Journal, 34(11):15448-15461.

Dutkowski, Philipp; Mueller, Matteo; Eshmuminov, Dilmurodjon; Bautista Borrego, Lucia; Becker, Dustin; Hefti, Max; Schuler, Martin J; Rudolf von Rohr, Philipp; Clavien, Pierre-Alain (2020). Reply to: Lactate Measurements in an Integrated Perfusion Machine for Human Livers. Nature Biotechnology, 38(11):1263-1264.

Gray, Alison; Bradbury, Andrew R M; Knappik, Achim; Plückthun, Andreas; Borrebaeck, Carl A K; Dübel, Stefan (2020). Animal-free alternatives and the antibody iceberg. Nature Biotechnology, 38(11):1234-1239.

Luyckx, Valerie A; Brenner, Barry M (2020). Clinical consequences of developmental programming of low nephron number. Anatomical Record, 303(10):2613-2631.

Jiang, Jingjing; Di Costanzo Mata, Aldo; Lindner, Scott; Charbon, Edoardo; Wolf, Martin; Kalyanov, Alexander (2020). Dynamic time domain near-infrared optical tomography based on a SPAD camera. Biomedical Optics Express, 11(10):5470.

Anderson, Annette Carola; Rothballer, Michael; Altenburger, Markus Jörg; Woelber, Johan Peter; Karygianni, Lamprini; Vach, Kirstin; Hellwig, Elmar; Al-Ahmad, Ali (2020). Long-Term Fluctuation of Oral Biofilm Microbiota following Different Dietary Phases. Applied and Environmental Microbiology, 86(20):e01421.

Rauber, Ramona; Kranstauber, Bart; Manser, Marta B (2020). Call order within vocal sequences of meerkats contains temporary contextual and individual information. BMC Biology, 18:119.

Ni, Ruiqing; Chen, Zhenyue; Gerez, Juan A; Shi, Gloria; Zhou, Quanyu; Riek, Roland; Nilsson, K Peter R; Razansky, Daniel; Klohs, Jan (2020). Detection of cerebral tauopathy in P301L mice using high-resolution large-field multifocal illumination fluorescence microscopy. Biomedical Optics Express, 11(9):4989.

Gimeno, A; Kägi, A; Drakopoulos, D; Bänziger, I; Lehmann, E; Forrer, H‐R; Keller, Beat; Vogelgsang, S (2020). From laboratory to the field: biological control of Fusarium graminearum on infected maize crop residues. Journal of applied microbiology, 129(3):680-694.

Brandenberg, Nathalie; Hoehnel, Sylke; Kuttler, Fabien; Homicsko, Krisztian; Ceroni, Camilla; Ringel, Till; Gjorevski, Nikolce; Schwank, Gerald; Coukos, George; Turcatti, Gerardo; Lutolf, Matthias P (2020). High-throughput automated organoid culture via stem-cell aggregation in microcavity arrays. Nature Biomedical Engineering, 4(9):863-874.

Alphandéry, Edouard (2020). The Potential of Various Nanotechnologies for Coronavirus Diagnosis/Treatment Highlighted through a Literature Analysis. Bioconjugate Chemistry, 31(8):1873-1882.

Becker, Lukas; Verdurmen, Wouter P R; Plückthun, Andreas (2020). Reengineering anthrax toxin protective antigen for improved receptor-specific protein delivery. BMC Biology, 18(1):100.

Alzeer, Jawad; Rieder, Ulrike; Hadeed, Khaled Abou (2020). Good agricultural practices and its compatibility with Halal standards. Trends in Food Science & Technology, 102:237-241.

Jiang, Jingjing; Di Costanzo Mata, Aldo; Lindner, Scott; Zhang, Chao; Charbon, Edoardo; Wolf, Martin; Kalyanov, Alexander (2020). Image reconstruction for novel time domain near infrared optical tomography: towards clinical applications. Biomedical Optics Express, 11(8):4723.

Tai, Yee Kit; Ng, Charmaine; Purnamawati, Kristy; Yap, Jasmine Lye Yee; Yin, Jocelyn Naixin; Wong, Craig; Patel, Bharati Kadamb; Soong, Poh Loong; Pelczar, Pawel; Fröhlich, Jürg; Beyer, Christian; Fong, Charlene Hui Hua; Ramanan, Sharanya; Casarosa, Marco; Cerrato, Carmine Pasquale; Foo, Zi Ling; Pannir Selvan, Rina Malathi; Grishina, Elina; Degirmenci, Ufuk; Toh, Shi Jie; Richards, Pete J; Mirsaidi, Ali; Wuertz-Kozak, Karin; Chong, Suet Yen; Ferguson, Stephen J; Aguzzi, Adriano; et al (2020). Magnetic fields modulate metabolism and gut microbiome in correlation with Pgc‐1α expression: Follow‐up to an in vitro magnetic mitohormetic study. FASEB Journal, 34(8):11143-11167.

Gray, Alison C; Bradbury, Andrew R M; Knappik, Achim; Plückthun, Andreas; Borrebaeck, Carl A K; Dübel, Stefan (2020). Animal-derived-antibody generation faces strict reform in accordance with European Union policy on animal use. Nature Methods, 17(8):755-756.

Pellegrino, Christian; Favalli, Nicholas; Sandholzer, Michael; Volta, Laura; Bassi, Gabriele; Millul, Jacopo; Cazzamalli, Samuele; Matasci, Mattia; Villa, Alessandra; Myburgh, Renier; Manz, Markus G; Neri, Dario (2020). Impact of ligand size and conjugation chemistry on the performance of universal chimeric antigen receptor T-cells for tumor killing. Bioconjugate Chemistry, 31(7):1775-1783.

Niggli, Selina; Kümmerli, Rolf (2020). Strain Background, Species Frequency, and Environmental Conditions Are Important in Determining Pseudomonas aeruginosa and Staphylococcus aureus Population Dynamics and Species Coexistence. Applied and Environmental Microbiology, 86(18):e00962-20.

Ghazi, Susan; Bourgeois, Soline; Gomariz, Alvaro; Bugarski, Milica; Haenni, Dominik; Martins, Joana R; Nombela-Arrieta, César; Unwin, Robert J; Wagner, Carsten A; Hall, Andrew M; Craigie, Eilidh (2020). Multiparametric imaging reveals that mitochondria-rich intercalated cells in the kidney collecting duct have a very high glycolytic capacity. FASEB Journal, 34(6):8510-8525.

Gonzalez‐Rosillo, Juan Carlos; Catalano, Sara; Maggio‐Aprile, Ivan; Gibert, Marta; Obradors, Xavier; Palau, Anna; Puig, Teresa (2020). Nanoscale correlations between metal-insulator transition and resistive switching effect in metallic perovskite oxides. Small, 16(23):e2001307.

Malan-Müller, Stefanie; de Souza, Vladimir B C; Daniels, Willie M U; Seedat, Soraya; Robinson, Mark D; Hemmings, Sîan M J (2020). Shedding Light on the Transcriptomic Dark Matter in Biological Psychiatry: Role of Long Noncoding RNAs in D-cycloserine-Induced Fear Extinction in Posttraumatic Stress Disorder. Omics : a journal of integrative biology, 24(6):352-369.

Villaseñor, Rodrigo; Pfaendler, Ramon; Ambrosi, Christina; Butz, Stefan; Giuliani, Sara; Bryan, Elana; Sheahan, Thomas W; Gable, Annika L; Schmolka, Nina; Manzo, Massimiliano; Wirz, Joël; Feller, Christian; von Mering, Christian; Aebersold, Ruedi; Voigt, Philipp; Baubec, Tuncay (2020). ChromID identifies the protein interactome at chromatin marks. Nature Biotechnology, 38(6):728-736.

Villaseñor, Rodrigo; Pfaendler, Ramon; Ambrosi, Christina; Butz, Stefan; Giuliani, Sara; Bryan, Elana; Sheahan, Thomas W; Gable, Annika L; Schmolka, Nina; Manzo, Massimiliano; Wirz, Joël; Feller, Christian; von Mering, Christian; Aebersold, Ruedi; Voigt, Philipp; Baubec, Tuncay (2020). Publisher Correction: ChromID identifies the protein interactome at chromatin marks. Nature Biotechnology, 38(6):757.

Poupart, Oriane; Schmocker, Andreas; Conti, Riccardo; Moser, Christophe; Nuss, Katja M; Grützmacher, Hansjörg; Mosimann, Pascal J; Pioletti, Dominique P (2020). In vitro Implementation of Photopolymerizable Hydrogels as a Potential Treatment of Intracranial Aneurysms. Frontiers in Bioengineering and Biotechnology, 8:261.

Pagella, Pierfrancesco; Miran, Shayee; Neto, Estrela; Martin, Ivan; Lamghari, Meriem; Mitsiadis, Thimios A (2020). Human dental pulp stem cells exhibit enhanced properties in comparison to human bone marrow stem cells on neurites outgrowth. FASEB Journal, 34(4):5499-5511.

McLuckie, Michelle; Robotti, Francesco; Sanchez-Macedo, Nadia; Enderlin, Dominik; Frese, Laura; Cheng, Phil F; Levesque, Mitchell P; Egaña, José T; Poulikakos, Dimos; Ferrari, Aldo; Lindenblatt, Nicole (2020). Lipoconstruct surface topography grating size influences vascularization onset in the dorsal skinfold chamber model. Acta Biomaterialia, 106:136-144.

Kim, Bong-Sung; Tilstam, Pathricia V; Arnke, Kevin; Leng, Lin; Ruhl, Tim; Piecychna, Marta; Schulte, Wibke; Sauler, Maor; Frueh, Florian S; Storti, Gabriele; Lindenblatt, Nicole; Giovanoli, Pietro; Pallua, Norbert; Bernhagen, Jürgen; Bucala, Richard (2020). Differential regulation of macrophage activation by the MIF cytokine superfamily members MIF and MIF-2 in adipose tissue during endotoxemia. FASEB Journal, 34(3):4219-4233.

Sanders, Ashley D; Meiers, Sascha; Ghareghani, Maryam; Porubsky, David; Jeong, Hyobin; van Vliet, M Alexandra C C; Rausch, Tobias; Richter-Pechańska, Paulina; Kunz, Joachim B; Jenni, Silvia; Bolognini, Davide; Longo, Gabriel M C; Raeder, Benjamin; Kinanen, Venla; Zimmermann, Jürgen; Benes, Vladimir; Schrappe, Martin; Mardin, Balca R; Kulozik, Andreas E; Bornhauser, Beat; Bourquin, Jean-Pierre; Marschall, Tobias; Korbel, Jan O (2020). Single-cell analysis of structural variations and complex rearrangements with tri-channel processing. Nature Biotechnology, 38(3):343-354.

Subochev, Pavel; Smolina, Ekaterina; Sergeeva, Ekaterina; Kirillin, Mikhail; Orlova, Anna; Kurakina, Daria; Emyanov, Daniil; Razansky, Daniel (2020). Toward whole-brain in vivo optoacoustic angiography of rodents: modeling and experimental observations. Biomedical Optics Express, 11(3):1477-1488.

Chen, William S; Zivanovic, Nevena; van Dijk, David; Wolf, Guy; Bodenmiller, Bernd; Krishnaswamy, Smita (2020). Uncovering axes of variation among single-cell cancer specimens. Nature Methods, 17(3):302-310.

Korn, Paula; Ahlfeld, Tilman; Lahmeyer, Franziska; Kilian, David; Sembdner, Philipp; Stelzer, Ralph; Pradel, Winnie; Franke, Adrian; Rauner, Martina; Range, Ursula; Stadlinger, Bernd; Lode, Anja; Lauer, Günter; Gelinsky, Michael (2020). 3D Printing of Bone Grafts for Cleft Alveolar Osteoplasty – In vivo Evaluation in a Preclinical Model. Frontiers in Bioengineering and Biotechnology, 8:217.

Cheng, Richard Y; Eylert, Gertraud; Gariepy, Jean-Michel; He, Sijin; Ahmad, Hasan; Gao, Yizhou; Priore, Stefania; Hakimi, Navid; Jeschke, Marc G; Günther, Axel (2020). Handheld instrument for wound-conformal delivery of skin precursor sheets improves healing in full-thickness burns. Biofabrication, 12(2):025002.

Komarynets, Olga; Chassot, Alexandra; Bernabeu, Eva; Czogalla, Jan; Roth, Isabelle; Liaudet, Nicolas; Prodon, François; Loffing, Johannes; Feraille, Eric (2020). Aldosterone controls primary cilium length and cell size in renal collecting duct principal cells. FASEB Journal, 34(2):2625-2640.

Eshmuminov, Dilmurodjon; Becker, Dustin; Bautista Borrego, Lucia; Hefti, Max; Schuler, Martin J; Hagedorn, Catherine; Muller, Xavier; Mueller, Matteo; Onder, Christopher; Graf, Rolf; Weber, Achim; Dutkowski, Philipp; Rudolf von Rohr, Philipp; Clavien, Pierre-Alain (2020). An Integrated Perfusion Machine Preserves Injured Human Livers For 1 Week. Nature Biotechnology, 38(2):189-198.

Sulser, Pascale; Pickel, Christina; Günter, Julia; Leissing, Thomas M; Crean, Daniel; Schofield, Christopher J; Wenger, Roland H; Scholz, Carsten C (2020). HIF hydroxylase inhibitors decrease cellular oxygen consumption depending on their selectivity. FASEB Journal, 34(2):2344-2358.

Dizin, Eva; Olivier, Valérie; Maire, Charline; Komarynets, Olga; Sassi, Ali; Roth, Isabelle; Loffing, Johannes; de Seigneux, Sophie; Maillard, Marc; Rutkowski, Joseph M; Edwards, Aurélie; Feraille, Eric (2020). Time‐course of sodium transport along the nephron in nephrotic syndrome: the role of potassium. FASEB Journal, 34(2):2408-2424.

Aalto-Araneda, Mariella; Pöntinen, Anna; Pesonen, Maiju; Corander, Jukka; Markkula, Annukka; Tasara, Taurai; Stephan, Roger; Korkeala, Hannu (2020). Strain variability of Listeria monocytogenes under NaCl stress elucidated by a high-throughput microbial growth data assembly and analysis protocol. Applied and Environmental Microbiology, 86(6):e02378-19.

Alcântara-Neto, A S; Fernandez-Rufete, M; Corbin, E; Tsikis, G; Uzbekov, R; Garanina, A S; Coy, P; Almiñana, C; Mermillod, Pascal (2020). Oviduct fluid extracellular vesicles regulate polyspermy during porcine invitro fertilisation. Reproduction, Fertility and Development, 32(4):409.

Zhang, Junling; van der Heijden, Marcel G A; Zhang, Fusuo; Bender, S Franz (2020). Soil biodiversity and crop diversification are vital components of healthy soils and agricultural sustainability. Frontiers of Agricultural Science and Engineering, 7(3):236.

Shaul, Merav E; Eyal, Ophir; Guglietta, Silvia; Aloni, Pazzit; Zlotnik, Asaf; Forkosh, Ester; Levy, Liran; Weber, Lukas M; Levin, Yonathan; Pomerantz, Alon; Nechushtan, Hovav; Eruslanov, Evgeniy; Singhal, Sunil; Robinson, Mark D; Krieg, Carsten; Fridlender, Zvi G (2020). Circulating neutrophil subsets in advanced lung cancer patients exhibit unique immune signature and relate to prognosis. FASEB Journal, 34(3):4204-4218.

Willi, Yvonne; Fracassetti, Marco; Bachmann, Olivier; Van Buskirk, Josh (2020). Demographic Processes Linked to Genetic Diversity and Positive Selection across a Species' Range. Plant Communications, 1(6):100111.

Schwarz, Anne; Veerbeek, Janne M; Held, Jeremia P O; Buurke, Jaap H; Luft, Andreas R (2020). Measures of Interjoint Coordination Post-stroke Across Different Upper Limb Movement Tasks. Frontiers in Bioengineering and Biotechnology, 8:620805.

Nazari-Shafti, Timo Z; Exarchos, Vasileios; Biefer, Héctor Rodriguez Cetina; Cesarovic, Nikola; Meyborg, Heike; Falk, Volkmar; Emmert, Maximilian Y (2020). MicroRNA Mediated Cardioprotection - Is There a Path to Clinical Translation? Frontiers in Bioengineering and Biotechnology, 8:149.

Hussung, Saskia; Fritsch, Ralph M (2020). Multi-target ddPCR Assays zur Detektion von KRAS- und NRAS-Mutationen. BIOspektrum, 26(6):629-634.

Ehrbar, Martin; Rossi, Filippo; Cellesi, Francesco (2020). Nanosized Drug Delivery Systems: Colloids and Gels for Site Specific Targeting. Frontiers in Bioengineering and Biotechnology, 8:803.

Gottschalk, Sven; Degtyaruk, Oleksiy; Mc Larney, Benedict; Rebling, Johannes; Hutter, Magdalena Anastasia; Deán-Ben, Xosé Luís; Shoham, Shy; Razansky, Daniel (2020). Publisher Correction: Rapid volumetric optoacoustic imaging of neural dynamics across the mouse brain. Nature Biomedical Engineering, 4(11):1120.


Walter, Jasmin; Huwiler, Fabian; Fortes, Claudia; Grossmann, Jonas; Roschitzki, Bernd; Hu, Junmin; Naegeli, Hanspeter; Laczko, Endre; Bleul, Ulrich (2019). Analysis of the equine “cumulome” reveals major metabolic aberrations after maturation in vitro. BMC Genomics, 20(1):588.

Jain, Rashmi; Jenkins, Jerry; Shu, Shengqiang; Chern, Mawsheng; Martin, Joel A; Copetti, Dario; Duong, Phat Q; Pham, Nikki T; Kudrna, David A; Talag, Jayson; Schackwitz, Wendy S; Lipzen, Anna M; Dilworth, David; Bauer, Diane; Grimwood, Jane; Nelson, Catherine R; Xing, Feng; Xie, Weibo; Barry, Kerrie W; Wing, Rod A; Schmutz, Jeremy; Li, Guotian; Ronald, Pamela C (2019). Genome sequence of the model rice variety KitaakeX. BMC Genomics, 20(1):905.

Kuon, Joel-E; Qi, Weihong; Schläpfer, Pascal; Hirsch-Hoffmann, Matthias; von Bieberstein, Philipp Rogalla; Patrignani, Andrea; Poveda, Lucy; Grob, Stefan; Keller, Miyako; Shimizu-Inatsugi, Rie; Grossniklaus, Ueli; Vanderschuren, Hervé; Gruissem, Wilhelm (2019). Haplotype-resolved genomes of geminivirus-resistant and geminivirus-susceptible African cassava cultivars. BMC Biology, 17(1):75.

Buoso, Stefano; Manzoni, Andrea; Alkadhi, Hatem; Plass, André; Quarteroni, Alfio; Kurtcuoglu, Vartan (2019). Reduced-order modeling of blood flow for noninvasive functional evaluation of coronary artery disease. Biomechanics and Modeling in Mechanobiology, 18(6):1867-1881.

Armaleo, Daniele; Müller, Olaf; Lutzoni, François; et al; Szövényi, Péter (2019). The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata. BMC Genomics, 20:605.

Dumeau, Charles-Etienne; Monfort, Asun; Kissling, Lucas; Swarts, Daan C; Jinek, Martin; Wutz, Anton (2019). Introducing gene deletions by mouse zygote electroporation of Cas12a/Cpf1. Transgenic research, 28(5-6):525-535.

Yang, Lin; Gradl, Regine; Dierolf, Martin; Möller, Winfried; Kutschke, David; Feuchtinger, Annette; Hehn, Lorenz; Donnelley, Martin; Günther, Benedikt; Achterhold, Klaus; Walch, Axel; Stoeger, Tobias; Razansky, Daniel; Pfeiffer, Franz; Morgan, Kaye S; Schmid, Otmar (2019). Multimodal Precision Imaging of Pulmonary Nanoparticle Delivery in Mice: Dynamics of Application, Spatial Distribution, and Dosimetry. Small, 15(49):e1904112.

Zeng, Shuqin; Ulbrich, Susanne E; Bauersachs, Stefan (2019). Spatial organization of endometrial gene expression at the onset of embryo attachment in pigs. BMC Genomics, 20(1):895.

Walther, Barbara; Lett, Aaron M; Bordoni, Alessandra; Tomás‐Cobos, Lidia; Nieto, Juan Antonio; Dupont, Didier; Danesi, Francesca; Shahar, Danit R; Echaniz, Ana; Re, Roberta; Fernandez, Aida Sainz; Deglaire, Amélie; Gille, Doreen; Schmid, Alexandra; Vergères, Guy (2019). GutSelf: Interindividual Variability in the Processing of Dietary Compounds by the Human Gastrointestinal Tract. Molecular Nutrition & Food Research, 63(21):1900677.

Buess, Simone; Zurfluh, Katrin; Stephan, Roger; Guldimann, Claudia (2019). Quantitative microbiological slaughter process analysis in a large-scale Swiss poultry abattoir. Food Control, 105:86-93.

Voigt, Fabian F; Kirschenbaum, Daniel; Platonova, Evgenia; Pagès, Stéphane; Campbell, Robert A A; Kastli, Rahel; Schaettin, Martina; Egolf, Ladan; van der Bourg, Alexander; Bethge, Philipp; Haenraets, Karen; Frézel, Noémie; Topilko, Thomas; Perin, Paola; Hillier, Daniel; Hildebrand, Sven; Schueth, Anna; Roebroeck, Alard; Roska, Botond; Stoeckli, Esther T; Pizzala, Roberto; Renier, Nicolas; Zeilhofer, Hanns Ulrich; Karayannis, Theofanis; Ziegler, Urs; Batti, Laura; Holtmaat, Anthony; Lüscher, Christian; Aguzzi, Adriano; Helmchen, Fritjof (2019). The mesoSPIM initiative: open-source light-sheet microscopes for imaging cleared tissue. Nature Methods, 16(11):1105-1108.

Nasyrov, Emil; Nolan, Karen A; Wenger, Roland H; Marti, Hugo H; Kunze, Reiner (2019). The neuronal oxygen-sensing pathway controls postnatal vascularization of the murine brain. FASEB Journal, 33(11):12812-12824.

Weinans, Els; Lever, J Jelle; Bathiany, Sebastian; Quax, Rick; Bascompte, Jordi; van Nes, Egbert H; Scheffer, Marten; van de Leemput, Ingrid A (2019). Finding the direction of lowest resilience in multivariate complex systems. Journal of the Royal Society Interface, 16(159):20190629.

Palazzi, Maria J; Borge-Holthoefer, Javier; Tessone, Claudio J; Solé-Ribalta, Albert (2019). Macro- and mesoscale pattern interdependencies in complex networks. Journal of the Royal Society Interface, 16:20190553.

Bircher, Kevin; Ehret, Alexander E; Spiess, Deborah; Ehrbar, Martin; Simões-Wüst, Ana Paula; Ochsenbein-Kölble, Nicole; Zimmermann, Roland; Mazza, Edoardo (2019). On the defect tolerance of fetal membranes. Interface Focus, 9(5):20190010.

Generali, Melanie; Casanova, Elisa A; Kehl, Debora; Wanner, Debora; Hoerstrup, Simon P; Cinelli, Paolo; Weber, Benedikt (2019). Autologous endothelialized small-caliber vascular grafts engineered from blood-derived induced pluripotent stem cells. Acta Biomaterialia, 97:333-343.

Chen, Zhenyue; Deán-Ben, Xosé Luis; Liu, Nian; Gujrati, Vipul; Gottschalk, Sven; Ntziachristos, Vasilis; Razansky, Daniel (2019). Concurrent fluorescence and volumetric optoacoustic tomography of nanoagent perfusion and bio-distribution in solid tumors. Biomedical Optics Express, 10(10):5093-5102.

Süss, David; Iwersen, Michael; Schweinzer, Vanessa; Gusterer, Erika; Kanz, Peter; Krieger, Stefanie; Pothmann, Harald; Wagener, Karen; Hoelker, Michael; Tesfaye, Dawit; Schellander, Karl; Helmbrecht, Ariane; Parys, Claudia; Drillich, Marc (2019). Supplementing rumen‐protected methionine to lactating multiparous dairy cows did not improve reproductive performance. Reproduction in Domestic Animals, 54(9):1265-1273.

Choobdar, Sarvenaz; Ahsen, Mehmet E; Crawford, Jake; Tomasoni, Mattia; Fang, Tao; Lamparter, David; Lin, Junyuan; Hescott, Benjamin; Hu, Xiaozhe; Mercer, Johnathan; Natoli, Ted; Narayan, Rajiv; von Mering, C; Subramanian, Aravind; Zhang, Jitao D; Stolovitzky, Gustavo; Kutalik, Zoltán; Lage, Kasper; Slonim, Donna K; Saez-Rodriguez, Julio; Cowen, Lenore J; Bergmann, Sven; Marbach, Daniel (2019). Assessment of network module identification across complex diseases. Nature Methods, 16(9):843-852.

Zeng, Shuqin; Bick, Jochen; Kradolfer, David; Knubben, Johannes; Flöter, Veronika L; Bauersachs, Stefan; Ulbrich, Susanne E (2019). Differential transcriptome dynamics during the onset of conceptus elongation and between female and male porcine embryos. BMC Genomics, 20(1):679.

Scholderer, Joachim; Veflen, Nina (2019). Social norms and risk communication. Trends in Food Science & Technology, 84:62-63.

Poser, Steven W; Otto, Oliver; Arps-Forker, Carina; Ge, Yan; Herbig, Maik; Andree, Cordula; Gruetzmann, Konrad; Adasme, Melissa F; Stodolak, Szymon; Nikolakopoulou, Polyxeni; Park, Deric M; Mcintyre, Alan; Lesche, Mathias; Dahl, Andreas; Lennig, Petra; Bornstein, Stefan R; Schroeck, Evelin; Klink, Barbara; Leker, Ronen R; Bickle, Marc; Chrousos, George P; Schroeder, Michael; Cannistraci, Carlo Vittorio; Guck, Jochen; Androutsellis-Theotokis, Andreas (2019). Controlling distinct signaling states in cultured cancer cells provides a new platform for drug discovery. FASEB Journal, 33(8):9235-9249.

Zhang, Xiaotian; Liu, Shanqiu; Salim, Alma; Seeger, Stefan (2019). Hierarchical Structured Multifunctional Self‐Cleaning Material with Durable Superhydrophobicity and Photocatalytic Functionalities. Small, 15(34):1901822.

Bonomi, Massimiliano; Bussi, Giovanni; Camilloni, Carlo; Tribello, Gareth A; Banáš, Pavel; Barducci, Alessandro; Bernetti, Mattia; Bolhuis, Peter G; Bottaro, Sandro; Branduardi, Davide; Capelli, Riccardo; Carloni, Paolo; Ceriotti, Michele; Cesari, Andrea; Chen, Haochuan; Chen, Wei; Colizzi, Francesco; De, Sandip; De La Pierre, Marco; Donadio, Davide; Drobot, Viktor; Ensing, Bernd; Ferguson, Andrew L; Filizola, Marta; Fraser, James S; Fu, Haohao; Gasparotto, Piero; Gervasio, Francesco Luigi; Giberti, Federico; Gil-Ley, Alejandro; Giorgino, Toni; Heller, Gabriella T; Hocky, Glen M; Iannuzzi, Marcella; Invernizzi, Michele; Jelfs, Kim E; Jussupow, Alexander; Kirilin, Evgeny; Laio, Alessandro; Limongelli, Vittorio; et al (2019). Promoting transparency and reproducibility in enhanced molecular simulations. Nature Methods, 16(8):670-673.

Monson, Tesla A; Coleman, Jeffrey L; Hlusko, Leslea J (2019). Craniodental Allometry, Prenatal Growth Rates, and the Evolutionary Loss of the Third Molars in New World Monkeys. Anatomical Record, 302(8):1419-1433.

Lorenzer, Cornelia; Streußnig, Sonja; Tot, Emilia; Winkler, Anna-Maria; Merten, Hannes; Brandl, Fabian; Sayers, Edward J; Watson, Peter; Jones, Arwyn T; Zangemeister-Wittke, Uwe; Plückthun, Andreas; Winkler, Johannes (2019). Targeted delivery and endosomal cellular uptake of DARPin-siRNA bioconjugates: Influence of linker stability on gene silencing. European Journal of Pharmaceutics and Biopharmaceutics, 141:37-50.

Fuente, Rocío; Gil-Peña, Helena; Claramunt-Taberner, Débora; Hernández-Frías, Olaya; Fernández-Iglesias, Ángela; Alonso-Durán, Laura; Rodríguez-Rubio, Enrique; Hermida-Prado, Francisco; Anes-González, Gonzalo; Rubio-Aliaga, Isabel; Wagner, Carsten; Santos, Fernando (2019). MAPK inhibition and growth hormone: a promising therapy in XLH. FASEB Journal, 33(7):8349-8362.

Occhetta, Paola; Mainardi, Andrea; Votta, Emiliano; Vallmajo-Martin, Queralt; Ehrbar, Martin; Martin, Ivan; Barbero, Andrea; Rasponi, Marco (2019). Hyperphysiological compression of articular cartilage induces an osteoarthritic phenotype in a cartilage-on-a-chip model. Nature Biomedical Engineering, 3(7):545-557.

Fay, Rachael; Gut, Melanie; Holland, Jason P (2019). Photoradiosynthesis of 68Ga-Labeled HBED-CC-Azepin-MetMAb for Immuno-PET of c-MET Receptors. Bioconjugate Chemistry, 30(6):1814-1820.

Romano, Donato; Donati, Elisa; Benelli, Giovanni; Stefanini, Cesare (2019). A review on animal–robot interaction: from bio-hybrid organisms to mixed societies. Biological Cybernetics, 113(3):201-225.

Isler, Helene; Schenk, Daniel; Bernhard, Jérôme; Kleiser, Stefan; Scholkmann, Felix; Ostojic, Daniel; Kalyanov, Alexander; Ahnen, Linda; Wolf, Martin; Karen, Tanja (2019). Absorption spectra of early stool from preterm infants need to be considered in abdominal NIRS oximetry. Biomedical Optics Express, 10(6):2784-2794.

Sych, Yaroslav; Chernysheva, Maria; Sumanovski, Lazar T; Helmchen, Fritjof (2019). High-density multi-fiber photometry for studying large-scale brain circuit dynamics. Nature Methods, 16(6):553-560.

Kashyap, Aditya; Fomitcheva Khartchenko, Anna; Pati, Pushpak; Gabrani, Maria; Schraml, Peter; Kaigala, Govind V (2019). Quantitative microimmunohistochemistry for the grading of immunostains on tumour tissues. Nature Biomedical Engineering, 3(6):478-490.

Egloff, Pascal; Zimmermann, Iwan; Arnold, Fabian M; Hutter, Cedric A J; Morger, Damien; Opitz, Lennart; Poveda, Lucy; Keserue, Hans-Anton; Panse, Christian; Roschitzki, Bernd; Seeger, Markus A (2019). Engineered peptide barcodes for in-depth analyses of binding protein libraries. Nature Methods, 16(5):421-428.

Deprey, Kirsten; Becker, Lukas; Kritzer, Joshua; Plückthun, Andreas (2019). Trapped! A Critical Evaluation of Methods for Measuring Total Cellular Uptake versus Cytosolic Localization. Bioconjugate Chemistry, 30(4):1006-1027.

Atzeni, Francesco; Lanfranconi, Flavio; Aegerter, Christof M (2019). Disentangling geometrical, viscoelastic and hyperelastic effects in force-displacement relationships of folded biological tissues. European Physical Journal. E, Soft matter, 42:47.

Brulé, Daphnée; Villano, Clizia; Davies, Laura J; Trdá, Lucie; Claverie, Justine; Héloir, Marie-Claire; Chiltz, Annick; Adrian, Marielle; Darblade, Benoît; Tornero, Pablo; Stransfeld, Lena; Boutrot, Freddy; Zipfel, Cyril; Dry, Ian B; Poinssot, Benoit (2019). The grapevine (Vitis vinifera) LysM receptor kinases VvLYK1-1 and VvLYK1-2 mediate chitooligosaccharide-triggered immunity. Plant Biotechnology Journal, 17(4):812-825.

Heine, P; Witt, G; Gilardi, A; Gribbon, P; Kummer, L; Plückthun, Andreas (2019). High-Throughput Fluorescence Polarization Assay to Identify Ligands Using Purified G Protein-Coupled Receptor. SLAS Discovery:2472555219837344.

Sánchez-Martín, Javier; Keller, Beat (2019). Contribution of recent technological advances to future resistance breeding. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 132(3):713-732.

Pfeilmeier, Sebastian; George, Jeoffrey; Morel, Arry; Roy, Sonali; Smoker, Matthew; Stransfeld, Lena; Downie, J Allan; Peeters, Nemo; Malone, Jacob G; Zipfel, Cyril (2019). Expression of the Arabidopsis thaliana immune receptor EFR in Medicago truncatula reduces infection by a root pathogenic bacterium, but not nitrogen‐fixing rhizobial symbiosis. Plant Biotechnology Journal, 17(3):569-579.

Fiume, Marc; Cupak, Miroslav; Keenan, Stephen; Rambla, Jordi; de la Torre, Sabela; Dyke, Stephanie O M; Brookes, Anthony J; Carey, Knox; Lloyd, David; Goodhand, Peter; Haeussler, Maximilian; Baudis, Michael; Stockinger, Heinz; Dolman, Lena; Lappalainen, Ilkka; Törnroos, Juha; Linden, Mikael; Spalding, J Dylan; Ur-Rehman, Saif; Page, Angela; Flicek, Paul; Sherry, Stephen; Haussler, David; Varma, Susheel; Saunders, Gary; Scollen, Serena (2019). Federated discovery and sharing of genomic data using Beacons. Nature Biotechnology, 37(3):220-224.

Gottschalk, Sven; Degtyaruk, Oleksiy; Mc Larney, Benedict; Rebling, Johannes; Hutter, Magdalena Anastasia; Deán-Ben, Xosé Luís; Shoham, Shy; Razansky, Daniel (2019). Rapid volumetric optoacoustic imaging of neural dynamics across the mouse brain. Nature Biomedical Engineering, 3(5):392-401.

Qian, Yong; Piatkevich, Kiryl D; Mc Larney, Benedict; Abdelfattah, Ahmed S; Mehta, Sohum; Murdock, Mitchell H; Gottschalk, Sven; Molina, Rosana S; Zhang, Wei; Chen, Yingche; Wu, Jiahui; Drobizhev, Mikhail; Hughes, Thomas E; Zhang, Jin; Schreiter, Eric R; Shoham, Shy; Razansky, Daniel; Boyden, Edward S; Campbell, Robert E (2019). A genetically encoded near-infrared fluorescent calcium ion indicator. Nature Methods, 16(2):171-174.

Koller, Teresa; Brunner, Susanne; Herren, Gerhard; Sanchez-Martin, Javier; Hurni, Severine; Keller, Beat (2019). Field grown transgenic Pm3e wheat lines show powdery mildew resistance and no fitness costs associated with high transgene expression. Transgenic research, 28(1):9-20.

Scaravaggi, Iside; Borel, Nicole; Romer, Rebekka; Imboden, Isabel; Ulbrich, Susanne E; Zeng, Shuqin; Bollwein, Heiner; Bauersachs, Stefan (2019). Cell type-specific endometrial transcriptome changes during initial recognition of pregnancy in the mare. Reproduction, Fertility and Development, 31(3):496.

Kriesi, Carlo; Steinert, Martin; Marmaras, Anastasios; Danzer, Claudia; Meskenaite, Virginia; Kurtcuoglu, Vartan (2019). Integrated Flow Chamber System for Live Cell Microscopy. Frontiers in Bioengineering and Biotechnology, 7:91.


Inglin, Raffael C; Meile, Leo; Stevens, Marc J A (2018). Clustering of pan- and core-genome of lactobacillus provides novel evolutionary insights for differentiation. BMC Genomics, 19(1):284.

Gutte, B; Klauser, S (2018). Design of catalytic polypeptides and proteins. Protein Engineering, Design & Selection, 31(12):457-470.

Di Cesare, Andrea; Cabello-Yeves, Pedro J; Chrismas, Nathan A M; Sánchez-Baracaldo, Patricia; Salcher, Michaela M; Callieri, Cristiana (2018). Genome analysis of the freshwater planktonic Vulcanococcus limneticus sp. nov. reveals horizontal transfer of nitrogenase operon and alternative pathways of nitrogen utilization. BMC Genomics, 19(1):259.

Forró, Csaba; Thompson-Steckel, Greta; Weaver, Sean; Weydert, Serge; Ihle, Stephan; Dermutz, Harald; Aebersold, Mathias J; Pilz, Raphael; Demkó, László; Vörös, János (2018). Modular microstructure design to build neuronal networks of defined functional connectivity. Biosensors & Bioelectronics, 122:75-87.

Vogt, Cédric M; Hilbe, Monika; Ackermann, Mathias; Aguilar, Claudi; Eichwald, Catherine (2018). Mouse intestinal microbiota reduction favors local intestinal immunity triggered by antigens displayed in Bacillus subtilis biofilm. Microbial Cell Factories, 17(1):187.

Srikumar, Shabarinath; Cao, Yu; Yan, Qiongqiong; Van Hoorde, Koenraad; Nguyen, Scott; Cooney, Shane; Gopinath, Gopal R; Tall, Ben D; Sivasankaran, Sathesh K; Lehner, Angelika; Stephan, Roger; Fanning, Séamus (2018). RNA sequencing-based transcriptional overview of Xerotolerance in Cronobacter sakazakii SP291. Applied and Environmental Microbiology, 85(3):pii: e01993-18.

Roos, Juliette; Maenhoudt, Cindy; Zilberstein, Luca; Mir, Fernando; Borges, Paulo; Furthner, Etienne; Niewiadomska, Zuzanna; Nudelmann, Nicolas; Fontbonne, Alain (2018). Neonatal puppy survival after planned caesarean section in the bitch using aglepristone as a primer: A retrospective study on 74 cases. Reproduction in Domestic Animals, 53(Suppl):85-95.

Hellenkamp, Björn; Schmid, Sonja; et al; Nettels, Daniel; Schuler, Benjamin (2018). Publisher Correction: Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study. Nature Methods, 15(11):984.

Huang, Ji; Montani, Jean-Pierre; Verrey, François; Feraille, Eric; Ming, Xiu-Fen; Yang, Zhihong (2018). Arginase-II negatively regulates renal aquaporin-2 and water reabsorption. FASEB Journal, 32(10):5520-5531.

Balogh, Orsolya; Borruat, Natalie; Meier, Angela Andrea; Hartnack, Sonja; Reichler, Iris M (2018). The influence of spaying and its timing relative to the onset of puberty on urinary and general behaviour in Labrador Retrievers. Reproduction in Domestic Animals, 53(5):1184-1190.

Hellenkamp, Björn; Schmid, Sonja; et al; Nettels, Daniel; Schuler, Benjamin (2018). Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study. Nature Methods, 15(9):669-676.

Almiñana, C; Tsikis, G; Labas, V; Uzbekov, R; da Silveira, J C; Bauersachs, Stefan; Mermillod, P (2018). Deciphering the oviductal extracellular vesicles content across the estrous cycle: implications for the gametes-oviduct interactions and the environment of the potential embryo. BMC Genomics, 19:622.

Espada, Margarida; Eves-van den Akker, Sebastian; Maier, Tom; Vijayapalani, Paramasivan; Baum, Thomas; Mota, Manuel; Jones, John T (2018). STATAWAARS: a promoter motif associated with spatial expression in the major effector-producing tissues of the plantparasitic nematode Bursaphelenchus xylophilus. BMC Genomics, 19(1):553.

Bick, Jochen T; Flöter, Veronika L; Robinson, Mark D; Bauersachs, Stefan; Ulbrich, Susanne E (2018). Small RNA-seq analysis of single porcine blastocysts revealed that maternal estradiol-17beta exposure does not affect miRNA isoform (isomiR) expression. BMC Genomics, 19(1):590.

Theocharides, Alexandre P A; Manz, Markus G (2018). Finally: development of humanized lymph nodes. Nature Methods, 15(8):580-582.

Leigh, D M; Lischer, H E L; Grossen, C; Keller, L F (2018). Batch effects in a multiyear sequencing study: false biological trends due to changes in read lengths. Molecular Ecology Resources, 18(4):778-788.

De Luca, Roberto; Kachel, Paul; Kropivsek, Klara; Snijder, Berend; Manz, Markus G; Neri, Dario (2018). A novel dual-cytokine-antibody fusion protein for the treatment of CD38-positive malignancies. Protein Engineering, Design & Selection, 31(5):173-179.

Tiefenauer, Raphael F; Dalgaty, Thomas; Keplinger, Tobias; Tian, Tian; Shih, Chih-Jen; Vörös, János; Aramesh, Morteza (2018). Monolayer Graphene Coupled to a Flexible Plasmonic Nanograting for Ultrasensitive Strain Monitoring. Small, 14(28):1801187.

Zhang, Ning; Stauffer, Flurin; Simona, Benjamin R; Zhang, Feng; Zhang, Zhao-Ming; Huang, Ning-Ping; Vörös, János (2018). Multifunctional 3D electrode platform for real-time in situ monitoring and stimulation of cardiac tissues. Biosensors & Bioelectronics, 112:149-155.

Zeng, Shuqin; Bick, Jochen; Ulbrich, Susanne E; Bauersachs, Stefan (2018). Cell type-specific analysis of transcriptome changes in the porcine endometrium on Day 12 of pregnancy. BMC Genomics, 19(1):459.

Duca, Stefano; Nax, Heinrich H (2018). Groups and scores: the decline of cooperation. Journal of the Royal Society Interface, 15(144):1-8.

Neuschmelting, Volker; Harmsen, Stefan; Beziere, Nicolas; Lockau, Hannah; Hsu, Hsiao-Ting; Huang, Ruimin; Razansky, Daniel; Ntziachristos, Vasilis; Kircher, Moritz F (2018). Dual-Modality Surface-Enhanced Resonance Raman Scattering and Multispectral Optoacoustic Tomography Nanoparticle Approach for Brain Tumor Delineation. Small, 14(23):1800740.

Welin, Amanda; Weber, Stephen; Hilbi, Hubert (2018). Quantitative Imaging Flow Cytometry of Legionella-Infected Dictyostelium Amoebae Reveals the Impact of Retrograde Trafficking on Pathogen Vacuole Composition. Applied and Environmental Microbiology, 84(11):e00158.

Frehner, Bianca Lourdes; Reichler, Iris M; Keller, Stefanie; Goericke-Pesch, S; Balogh, Orsolya (2018). Blood calcium, glucose and haematology profiles of parturient bitches diagnosed with uterine inertia or obstructive dystocia. Reproduction in Domestic Animals, 53(3):680-687.

Lardi, Martina; Pessi, Gabriella (2018). Functional Genomics Approaches to Studying Symbioses between Legumes and Nitrogen-Fixing Rhizobia. High-Throughput, 7(2):15.

Koller, Teresa; Brunner, Susanne; Herren, Gerhard; Hurni, Severine; Keller, Beat (2018). Pyramiding of transgenic Pm3 alleles in wheat results in improved powdery mildew resistance in the field. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 131(4):861-871.

Schoenenberger, Angelina D; Foolen, Jasper; Moor, Pascal; Silvan, Unai; Snedeker, Jess G (2018). Substrate fiber alignment mediates tendon cell response to inflammatory signaling. Acta Biomaterialia:1742-7061.

Ksiazek, Agnieszka A; Frese, Laura; Dijkman, Petra E; Sanders, Bart; Motta, Sarah E; Weber, Benedikt; Hoerstrup, Simon P (2018). Puncturing of lyophilized tissue engineered vascular matrices enhances the efficiency of their recellularization. Acta Biomaterialia, 71:474-485.

Njage, Patrick Murigu Kamau; Opiyo, Beatrice; Wangoh, John; Wambui, Joseph (2018). Scale of production and implementation of food safety programs influence the performance of current food safety management systems: case of dairy processors. Food Control, 85:85-97.

Zimoch, Jakub; Padial, Joan Simó; Klar, Agnes S; Vallmajo-Martin, Queralt; Meuli, Martin; Biedermann, Thomas; Wilson, Christopher J; Rowan, Alan; Reichmann, Ernst (2018). Polyisocyanopeptide hydrogels: A novel thermo-responsive hydrogel supporting pre-vascularization and the development of organotypic structures. Acta Biomaterialia, 70:129-139.

Martín-Fontecha, Mar; Angelina, Alba; Rückert, Beate; Rueda-Zubiaurre, Ainoa; Martin-Cruz, Leticia; van de Veen, Willem; Akdis, Mübeccel; Ortega-Gutierrez, Silvia; López-Rodrí­guez, María L; Akdis, Cezmi A; Palomares, Oscar (2018). A fluorescent probe to unravel functional features of cannabinoid receptor CB1 in human blood and tonsil immune system cells. Bioconjugate Chemistry, 29(2):382-389.

Catalán, Pablo; Wagner, Andreas; Manrubia, Susanna; Cuesta, José A (2018). Adding levels of complexity enhances robustness and evolvability in a multilevel genotype–phenotype map. Journal of the Royal Society Interface, 15(138):20170516.

Bittner, L; Wyck, S; Herrera, C; Siuda, M; Wrenzycki, C; van Loon, B; Bollwein, Heiner (2018). Negative effects of oxidative stress in bovine spermatozoa on in vitro development and DNA integrity of embryos. Reproduction, Fertility and Development, 30(10):1359-1368.

Alzeer, Jawad; Rieder, Ulrike; Hadeed, Khaled Abou (2018). Rational and practical aspects of Halal and Tayyib in the context of food safety. Trends in Food Science & Technology, 71:264-267.

Hosseini, Vahid; Evrova, Olivera; Hoerstrup, Simon P; Vogel, Viola (2018). A Simple Modification Method to Obtain Anisotropic and Porous 3D Microfibrillar Scaffolds for Surgical and Biomedical Applications. Small, 14(4):1-9.

Boni, Rainer; Chauhan, Harsh; Hensel, Goetz; Roulin, Anne; Sucher, Justine; Kumlehn, Jochen; Brunner, Susanne; Krattinger, Simon G; Keller, Beat (2018). Pathogen-inducible Ta-Lr34res expression in heterologous barley confers disease resistance without negative pleiotropic effects. Plant Biotechnology Journal, 16(1):245-253.

Randall, Matthew J; Jüngel, Astrid; Rimann, Markus; Wuertz-Kozak, Karin (2018). Advances in the Biofabrication of 3D Skin in vitro: Healthy and Pathological Models. Frontiers in Bioengineering and Biotechnology, 6:154.

Bao, Kai; Bostanci, Nagihan; Thurnheer, Thomas; Grossmann, Jonas; Wolski, Witold E; Thay, Bernard; Belibasakis, Georgios N; Oscarsson, Jan (2018). Aggregatibacter actinomycetemcomitans H-NS promotes biofilm formation and alters protein dynamics of other species within a polymicrobial oral biofilm. npj Biofilms and Microbiomes, 4:12.

Soneson, Charlotte; Robinson, Mark D (2018). Bias, robustness and scalability in single-cell differential expression analysis. Nature Methods, 15(4):255-261.

Morsdorf, Felix; Kükenbrink, Daniel; Schneider, Fabian D; Abegg, M; Schaepman, Michael E (2018). Close-range laser scanning in forests: towards physically based semantics across scales. Interface Focus, 8(2):2017.0046.

Kleiser, S; Ostojic, D; Andresen, B; Nasseri, N; Isler, H; Scholkmann, F; Karen, T; Greisen, G; Wolf, M (2018). Comparison of tissue oximeters on a liquid phantom with adjustable optical properties: an extension. Biomedical Optics Express, 9(1):86-101.

Held, Jeremia P O; Klaassen, Bart; Eenhoorn, Albert; van Beijnum, Bert-Jan F; Buurke, Jaap H; Veltink, Peter H; Luft, Andreas R (2018). Inertial Sensor Measurements of Upper-Limb Kinematics in Stroke Patients in Clinic and Home Environment. Frontiers in Bioengineering and Biotechnology, 6:27.

Boyce, C M; Penn, A; Pruessmann, K P; Müller, C R (2018). Magnetic resonance imaging of gas-solid fluidization with liquid bridging. AIChE Journal, 64(8):2958-2971.

Schaer, Christian A; Owczarek, Catherine; Deuel, Jeremy W; Schauer, Stefan; Baek, Jin Hyen; Yalamanoglu, Ayla; Hardy, Matthew P; Scotney, Pierre D; Schmidt, Peter M; Pelzing, Matthias; Soupourmas, Peter; Buehler, Paul W; Schaer, Dominik J (2018). Phenotype-specific recombinant haptoglobin polymers co-expressed with C1r-like protein as optimized hemoglobin-binding therapeutics. BMC Biotechnology:18:15.

Morales-Hojas, Ramiro; Hinsley, Malcolm; Armean, Irina M; Silk, Rhiannon; Harrup, Lara E; Gonzalez-Uriarte, Asier; Veronesi, Eva; Campbell, Lahcen; Nayduch, Dana; Saski, Christopher; Tabachnick, Walter J; Kersey, Paul; Carpenter, Simon; Fife, Mark (2018). The genome of the biting midge Culicoides sonorensis and gene expression analyses of vector competence for bluetongue virus. BMC Genomics:19:624.

Müller, Thomas; Schierscher-Viret, Beate; Fossati, Dario; Brabant, Cécile; Schori, Arnold; Keller, Beat; Krattinger, Simon G (2018). Unlocking the diversity of genebanks: whole-genome marker analysis of Swiss bread wheat and spelt. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 131(2):407-416.


Rongvaux, A; Willinger, T; Martinek, J; Strowig, T; Gearty, S V; Teichmann, L L; Saito, Y; Marches, F; Halene, S; Palucka, A K; Manz, M G; Flavell, R A (2017). Corrigendum: Development and function of human innate immune cells in a humanized mouse model. Nature Biotechnology, 35(12):1211.

Park, Jiyoung; Lee, Youngsook; Martinoia, Enrico; Geisler, Markus (2017). Plant hormone transporters: what we know and what we would like to know. BMC Biology, 15(1):93.

Generali, Melanie; Kehl, Debora; Capulli, Andrew K; Parker, Kevin K; Hoerstrup, Simon P; Weber, Benedikt (2017). Comparative analysis of poly-glycolic acid-based hybrid polymer starter matrices for in vitro tissue engineering. Colloids and Surfaces. B, Biointerfaces, 158:203-212.

Losfeld, Marie-Estelle; Scibona, Ernesto; Lin, Chia-Wei; Villiger, Thomas K; Gauss, Robert; Morbidelli, Massimo; Aebi, Markus (2017). Influence of protein/glycan interaction on site-specific glycan heterogeneity. FASEB Journal, 31(10):4623-4635.

Snedeker, Jess G; Foolen, Jasper (2017). Tendon injury and repair - A perspective on the basic mechanisms of tendon disease and future clinical therapy. Acta Biomaterialia, 63:18-36.

Schapiro, Denis; Jackson, Hartland W; Raghuraman, Swetha; Fischer, Jana R; Zanotelli, Vito R T; Schulz, Daniel; Giesen, Charlotte; Catena, Raúl; Varga, Zsuzsanna; Bodenmiller, Bernd (2017). histoCAT: analysis of cell phenotypes and interactions in multiplex image cytometry data. Nature Methods:8.

Voigt, Fabian F; Emaury, Florian; Bethge, Philipp; Waldburger, Dominik; Link, Sandro M; Carta, Stefano; van der Bourg, Alexander; Helmchen, Fritjof; Keller, Ursula (2017). Multiphoton in vivo imaging with a femtosecond semiconductor disk laser. Biomedical Optics Express, 8(7):3213-3231.

Agnoli, Kirsty; Freitag, Roman; Gomes, Margarida C; Jenul, Christian; Suppiger, Angela; Mannweiler, Olga; Frauenknecht, Carmen; Janser, Daniel; Vergunst, Annette C; Eberl, Leo (2017). Use of Synthetic Hybrid Strains To Determine the Role of Replicon 3 in Virulence of the Burkholderia cepacia Complex. Applied and Environmental Microbiology, 83(13):e00461-17.

Zhang, Ning; Milleret, Vincent; Thompson-Steckel, Greta; Huang, Ning-Ping; Vörös, János; Simona, Benjamin R; Ehrbar, Martin (2017). Soft hydrogels featuring in-depth surface density gradients for the simple establishment of 3D tissue models for screening applications. SLAS Discovery, 22(5):635-644.

O'Rourke, Kevin P; Loizou, Evangelia; Livshits, Geulah; Schatoff, Emma M; Baslan, Timour; Manchado, Eusebio; Simon, Janelle; Romesser, Paul B; Leach, Benjamin; Han, Teng; Pauli, Chantal; Beltran, Himisha; Rubin, Mark A; Dow, Lukas E; Lowe, Scott W (2017). Transplantation of engineered organoids enables rapid generation of metastatic mouse models of colorectal cancer. Nature Biotechnology, 35(6):1-8.

Thind, Anupriya Kaur; Wicker, Thomas; Šimková, Hana; Fossati, Dario; Moullet, Odile; Brabant, Cécile; Vrána, Jan; Doležel, Jaroslav; Krattinger, Simon G (2017). Rapid cloning of genes in hexaploid wheat using cultivar-specific long-range chromosome assembly. Nature Biotechnology, 35(8):793-796.

Wulf, Marie-Angela; Senatore, Assunta; Aguzzi, Adriano (2017). The biological function of the cellular prion protein: an update. BMC Biology, 15:34.

Veronese, Nicola; Cereda, Emanuele; Stubbs, Brendon; Solmi, Marco; Luchini, Claudio; Manzato, Enzo; Sergi, Giuseppe; Manu, Peter; Harris, Tamara; Fontana, Luigi; Strandberg, Timo; Amieva, Helene; Dumurgier, Julien; Elbaz, Alexis; Tzourio, Christophe; Eicholzer, Monika; Rohrmann, Sabine; Moretti, Claudio; D'Ascenzo, Fabrizio; Quadri, Giorgio; Polidoro, Alessandro; Lourenço, Roberto Alves; Moreira, Virgilio Garcia; Sanchis, Juan; Scotti, Valeria; Maggi, Stefania; Correll, Christoph U (2017). Risk of cardiovascular disease morbidity and mortality in frail and pre-frail older adults: Results from a meta-analysis and exploratory meta-regression analysis. Ageing Research Reviews, 35:63-73.

Schnippenkoetter, Wendelin; Lo, Clive; Liu, Guoquan; Dibley, Katherine; Chan, Wai Lung; White, Jodie; Milne, Ricky; Zwart, Alexander; Kwong, Eunjung; Keller, Beat; Godwin, Ian; Krattinger, Simon G; Lagudah, Evans (2017). The wheat Lr34 multipathogen resistance gene confers resistance to anthracnose and rust in sorghum. Plant Biotechnology Journal, 15(11):1387-1396.

Sucher, Justine; Boni, Rainer; Yang, Ping; Rogowsky, Peter; Büchner, Heike; Kastner, Christine; Kumlehn, Jochen; Krattinger, Simon G; Keller, Beat (2017). The durable wheat disease resistance gene Lr34 confers common rust and northern corn leaf blight resistance in maize. Plant Biotechnology Journal, 15(4):489-496.

Rinaldo, Amy; Gilbert, Brian; Boni, Rainer; Krattinger, Simon G; Singh, Davinder; Park, Robert F; Lagudah, Evans; Ayliffe, Michael (2017). The Lr34 adult plant rust resistance gene provides seedling resistance in durum wheat without senescence. Plant Biotechnology Journal, 15(7):894-905.

Bekpen, Cemalettin; Künzel, Sven; Xie, Chen; Eaaswarkhanth, Muthukrishnan; Lin, Yen-Lung; Gokcumen, Omer; Akdis, Cezmi A; Tautz, Diethard (2017). Segmental duplications and evolutionary acquisition of UV damage response in the SPATA31 gene family of primates and humans. BMC Genomics, 18(1):222.

Quandt, Brit M; Braun, Fabian; Ferrario, Damien; Rossi, René M; Scheel-Sailer, Anke; Wolf, Martin; Bona, Gian-Luca; Hufenus, Rudolf; Scherer, Lukas J; Boesel, Luciano F (2017). Body-monitoring with photonic textiles: a reflective heartbeat sensor based on polymer optical fibres. Journal of the Royal Society Interface, 14(128):20170060.

Lun, Xiao-Kang; Zanotelli, Vito R T; Wade, James D; Schapiro, Denis; Tognetti, Marco; Dobberstein, Nadine; Bodenmiller, Bernd (2017). Influence of node abundance on signaling network state and dynamics analyzed by mass cytometry. Nature Biotechnology, 35(2):164-172.

Müller, Linda; Kowalewski, Mariusz P; Reichler, Iris M; Kollár, Eszter; Balogh, Orsolya (2017). Different expression of leptin and IGF1 in the adult and prepubertal testis in dogs. Reproduction in Domestic Animals, 52(Suppl 2):187-192.

Chen, Gary G; Gross, Jeffrey A; Lutz, Pierre-Eric; Vaillancourt, Kathryn; Maussion, Gilles; Bramoulle, Alexandre; Théroux, Jean-François; Gardini, Elena S; Ehlert, Ulrike; Bourret, Geneviève; Masurel, Aurélie; Lepage, Pierre; Mechawar, Naguib; Turecki, Gustavo; Ernst, Carl (2017). Medium throughput bisulfite sequencing for accurate detection of 5-methylcytosine and 5-hydroxymethylcytosine. BMC Genomics, 18(1):96.

Fischer, Martin C; Rellstab, Christian; Leuzinger, Marianne; Roumet, Marie; Gugerli, Felix; Shimizu, Kentaro K; Holderegger, Rolf; Widmer, Alex (2017). Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri. BMC Genomics, 18(1):69.

Vazquez-Gutierrez, Pamela; Stevens, Marc J A; Gehrig, Peter; Barkow-Oesterreicher, Simon; Lacroix, Christophe; Chassard, Christophe (2017). The extracellular proteome of two Bifidobacterium species reveals different adaptation strategies to low iron conditions. BMC Genomics, 18(1):41.

Nasr, Mahmoud L; Baptista, Diego; Strauss, Mike; Sun, Zhen-Yu J; Grigoriu, Simina; Huser, Sonja; Plückthun, Andreas; Hagn, Franz; Walz, Thomas; Hogle, James M; Wagner, Gerhard (2017). Covalently circularized nanodiscs for studying membrane proteins and viral entry. Nature Methods, 14(1):49-52.

Bohacek, Johannes; Mansuy, Isabelle M (2017). A guide to designing germline-dependent epigenetic inheritance experiments in mammals. Nature Methods, 14(3):243-249.

Lowe, Robert; Almér, Alexander; Billing, Erik; Sandamirskaya, Yulia; Balkenius, Christian (2017). Affective–associative two-process theory: a neurocomputational account of partial reinforcement extinction effects. Biological Cybernetics, 111(5/6):365-388.

Keiser, Ramona; Reichler, Iris M; Balogh, Orsolya (2017). Are foetal ultrasonographic and maternal blood progesterone measurements near parturition reliable predictors of the time of birth in the domestic cat? Reproduction in Domestic Animals, 52(3):487-494.

Singla, Jyoti; Lüthi, Linda; Wicker, Thomas; Bansal, Urmil; Krattinger, Simon G; Keller, Beat (2017). Characterization of Lr75: a partial, broad-spectrum leaf rust resistance gene in wheat. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 130(1):1-12.

Frueh, Florian S; Menger, Michael D; Lindenblatt, Nicole; Giovanoli, Pietro; Laschke, Matthias W (2017). Current and emerging vascularization strategies in skin tissue engineering. Critical Reviews in Biotechnology, 37(5):613-625.

Graubner, F R; Reichler, Iris M; Rahman, N A; Payan-Carreira, R; Boos, Alois; Kowalewski, Mariusz P (2017). Decidualization of the canine uterus: From early until late gestational in vivo morphological observations, and functional characterization of immortalized canine uterine stromal cell lines. Reproduction in Domestic Animals, 52(52):137-147.

Huseynov, Alik; Ponce de León, Marcia S; Zollikofer, Christoph P E (2017). Development of Modular Organization in the Chimpanzee Pelvis. Anatomical Record, 300(4):675-686.

Zollikofer, Christoph P E; Scherrer, Marc; Ponce de León, Marcia S (2017). Development of Pelvic Sexual Dimorphism in Hylobatids: Testing the Obstetric Constraints Hypothesis. Anatomical Record, 300(5):859-869.

Wang, Shaopu; Kreuzer, Michael; Braun, Ueli; Schwarm, Angela (2017). Effect of unconventional oilseeds (safflower, poppy, hemp, camelina) on in vitro ruminal methane production and fermentation. Journal of the Science of Food and Agriculture, 97(11):3864-3870.

Sarno, Eleonora; Martin, A; McFarland, S; Johne, R; Stephan, Roger; Greiner, M (2017). Estimated exposure to hepatitis E virus through consumption of swine liver and liver sausages. Food Control, 73(Part B):821-828.

Kaya, D; Gram, A; Kowalewski, Mariusz P; Schäfer-Somi, S; Kuru, M; Boos, Alois; Aslan, S (2017). Expression of GnRH receptor in the canine corpus luteum, and luteal function following deslorelin acetate-induced puberty delay. Reproduction in Domestic Animals, 52(6):1104-1112.

Qureshi, Naeela; Bariana, Harbans; Forrest, Kerrie; Hayden, Matthew; Keller, Beat; Wicker, Thomas; Faris, Justin; Salina, Elena; Bansal, Urmil (2017). Fine mapping of the chromosome 5B region carrying closely linked rust resistance genes Yr47 and Lr52 in wheat. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 130(3):495-504.

Meier, Margrith; Suppiger, Angela; Eberl, Leo; Seeger, Stefan (2017). Functional silver-silicone-nanofilament-composite material for water disinfection. Small, 13(4):1601072.

Briskine, Roman V; Paape, Timothy; Shimizu-Inatsugi, Rie; Nishiyama, Tomoaki; Akama, Satoru; Sese, Jun; Shimizu, Kentaro K (2017). Genome assembly and annotation ofArabidopsis halleri, a model for heavy metal hyperaccumulation and evolutionary ecology. Molecular Ecology Notes, 17(5):1025-1036.

McLennon, Hanna J; Lüpold, Stefan; Smissen, Peter; Rowe, Kevin C; Breed, William G (2017). Greater sperm complexity in the Australasian old endemic rodents (Tribe: Hydromyini) associates with increased levels of intermale sperm competition. Reproduction, Fertility, and Development, 29(5):921-930.

Tardieu, Christine; Hasegawa, Kazuhiro; Haeusler, Martin (2017). How Did the Pelvis and Vertebral Column Become a Functional Unit during the Transition from Occasional to Permanent Bipedalism? Anatomical Record, 300(5):912-931.

Saddiqi, Naeem-ul-Hasan; Patra, Debabrata; Seeger, Stefan (2017). Hydroxyapatite biomineralization on functionalized silicone nanofilaments. Colloid and Interface Science Communications, 16:1-5.

Wangorsch, Andrea; Jamin, Annette; Lidholm, Jonas; Gräni, Nora; Lang, Claudia; Ballmer-Weber, Barbara; Vieths, Stefan; Scheurer, Stephan (2017). Identification and implication of an allergenic PR-10 protein from walnut in birch pollen associated walnut allergy. Molecular Nutrition & Food Research, 61(4):1600902.

Goetz, Werner; Papageorgiou, Spyridon N (2017). Molecular, cellular and pharmaceutical aspects of synthetic hydroxyapatite bone substitutes for oral and maxillofacial grafting. Current Pharmaceutical Biotechnology, 18(1):95-106.

Briskine, Roman V; Shimizu, Kentaro K (2017). Positional bias in variant calls against draft reference assemblies. BMC Genomics, 18(1):263.

Gourni, Eleni; et al; Holland, Jason P (2017). Radiochemistry and Preclinical PET Imaging of 68Ga-Desferrioxamine Radiotracers Targeting Prostate-Specific Membrane Antigen. Molecular Imaging, 16:1-11.

Singh, Simrat Pal; Keller, Beat; Gruissem, Wilhelm; Bhullar, Navreet K (2017). Rice NICOTIANAMINE SYNTHASE 2 expression improves dietary iron and zinc levels in wheat. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 130(2):283-292.

Nicolaï, Johan; Thevelin, Louise; Bing, Qi; Stieger, Bruno; Chanteux, Hugues; Augustijns, Patrick; Annaert, Pieter (2017). Role of the OATP Transporter Family and a Benzbromarone-SensitiveEfflux Transporter in the Hepatocellular Disposition of Vincristine. Pharmaceutical Research, 34(11):2336-2348.

Li, Xiang-Yi; Lachnit, Tim; Fraune, Sebastian; Bosch, Thomas C G; Traulsen, Arne; Sieber, Michael (2017). Temperate phages as self-replicating weapons in bacterial competition. Journal of the Royal Society Interface, 14(137):20170563.

Wiedemair, Wolfgang; Tukovic, Zeljko; Jasak, Hrvoje; Poulikakos, Dimos; Kurtcuoglu, Vartan (2017). The breakup of intravascular microbubbles and its impact on the endothelium. Biomechanics and Modeling in Mechanobiology, (16):611-624.

Zatta, Sophie; Rehrauer, Hubert; Gram, Aykut; Boos, Alois; Kowalewski, Mariusz P (2017). Transcriptome analysis reveals differences in mechanisms regulating cessation of luteal function in pregnant and non-pregnant dogs. BMC Genomics, 18(1):757.

Tall, Ben D; Gangiredla, J; Grim, C; Patel, I; Jackson, S; Mammel, M; Kothary, M; Sathyamoorthy, V; Carter, L; Fanning, S; Iversen, C; Pagotto, F; Stephan, Roger; Lehner, Angelika; Farber, J; Yan, Q Q; Gopinath, G (2017). Use of a Pan-genomic DNA microarray in determination of the phylogenetic relatedness among Cronobacter spp and its use as a data mining tool to understand Cronobacter biology. Microarrays, 6(1):E6.

Sutter, Sereina O; Fraefel, Cornel; Meier, Anita F (2017). Zellzyklusspezifische Genexpression des Adeno-assoziierten Virus. BIOspektrum, 23(6):655-657.


Martella, Andrea; Sepe, Rosa M; Silvestri, Cristoforo; Zang, Jingjing; Fasano, Giulia; Carnevali, Oliana; De Girolamo, Paolo; Neuhauss, Stephan C F; Sordino, Paolo; Di Marzo, Vincenzo (2016). Important role of endocannabinoid signaling in the development of functional vision and locomotion in zebrafish. FASEB Journal, 30(12):4275-4288.

Alzeer, Jawad; Abou Hadeed, Khaled (2016). Ethanol and its Halal status in food industries. Trends in Food Science & Technology, 58:14-20.

Zhakupova, Assem; Debeuf, Nincy; Krols, Michiel; Toussaint, Wendy; Vanhoutte, Leen; Alecu, Irina; Kutalik, Zoltán; Vollenweider, Peter; Ernst, Daniela; von Eckardstein, Arnold; Lambrecht, Bart N; Janssens, Sophie; Hornemann, Thorsten (2016). ORMDL3 expression levels have no influence on the activity of serine palmitoyltransferase. FASEB Journal, 30(12):4289-4300.

Salilew-Wondim, Dessie; Ibrahim, Sally; Gebremedhn, Samuel; Tesfaye, Dawit; Heppelmann, Maike; Bollwein, Heiner; Pfarrer, Christiane; Tholen, Ernst; Neuhoff, Christiane; Schellander, Karl; Hoelker, Michael (2016). Clinical and subclinical endometritis induced alterations in bovine endometrial transcriptome and miRNome profile. BMC Genomics, 17:218.

Ai, Ni; Cai, Haoyang; Solovan, Caius; Baudis, Michael (2016). CNARA: reliability assessment for genomic copy number profiles. BMC Genomics, 17:799.

Kiessling, Michael K; Schuierer, Sven; Stertz, Silke; Beibel, Martin; Bergling, Sebastian; Knehr, Judith; Carbone, Walter; de Vallière, Cheryl; Tchinda, Joelle; Bouwmeester, Tewis; Seuwen, Klaus; Rogler, Gerhard; Roma, Guglielmo (2016). Identification of oncogenic driver mutations by genome-wide CRISPR-Cas9 dropout screening. BMC Genomics, 17(1):723.

Lin, Ruby C Y; Kirschner, Michaela B; Cheng, Yuen Yee; van Zandwijk, Nico; Reid, Glen (2016). MicroRNA gene expression signatures in long-surviving malignant pleural mesothelioma patients. Genomics Data, 9:44-49.

Röst, Hannes L; Sachsenberg, Timo; Aiche, Stephan; Bielow, Chris; Weisser, Hendrik; Aicheler, Fabian; Andreotti, Sandro; Ehrlich, Hans-Christian; Gutenbrunner, Petra; Kenar, Erhan; Liang, Xiao; Nahnsen, Sven; Nilse, Lars; Pfeuffer, Julianus; Rosenberger, George; Rurik, Marc; Schmitt, Uwe; Veit, Johannes; Walzer, Mathias; Wojnar, David; Wolski, Witold E; Schilling, Oliver; Choudhary, Jyoti S; Malmström, Lars; Aebersold, Ruedi; Reinert, Knut; Kohlbacher, Oliver (2016). OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nature Methods, 13(9):741-748.

Metzger, Stéphanie; Blache, Ulrich; Lienemann, Philipp S; Karlsson, Maria; Weber, Franz E; Weber, Wilfried; Ehrbar, Martin (2016). Cell-Mediated Proteolytic Release of Growth Factors from Poly(Ethylene Glycol) Matrices. Macromolecular Bioscience, 16(11):1703-1713.

Manske, Christian; Schell, Ursula; Hilbi, Hubert (2016). Metabolism of myo-inositol by legionella pneumophila promotes infection of amoebae and macrophages. Applied and Environmental Microbiology, 82(16):5000-5014.

Kleiser, S; Nasseri, N; Andresen, B; Greisen, G; Wolf, M (2016). Comparison of tissue oximeters on a liquid phantom with adjustable optical properties. Biomedical Optics Express, 7(8):2973-2992.

Lindsay, Helen; Burger, Alexa; Biyong, Berthin; Felker, Anastasia; Hess, Christopher; Zaugg, Jonas; Chiavacci, Elena; Anders, Carolin; Jinek, Martin; Mosimann, Christian; Robinson, Mark D (2016). CrispRVariants charts the mutation spectrum of genome engineering experiments. Nature Biotechnology, 34(7):701-702.

Evrova, Olivera; Houska, Joanna; Welti, Manfred; Bonavoglia, Eliana; Calcagni, Maurizio; Giovanoli, Pietro; Vogel, Viola; Buschmann, Johanna (2016). Bioactive, elastic, and biodegradable emulsion electrospun degrapol tube delivering PDGF-BB for tendon rupture repair. Macromolecular Bioscience, 16(7):1048-63.

Schwarzenbacher, Hermann; Burgstaller, Johann; Seefried, Franz R; Wurmser, Christine; Hilbe, Monika; Jung, Simone; Fuerst, Christian; Dinhopl, Nora; Weissenböck, Herbert; Fuerst-Waltl, Birgit; Dolezal, Marlies; Winkler, Reinhard; Grueter, Oskar; Bleul, Ulrich; Wittek, Thomas; Fries, Ruedi; Pausch, Hubert (2016). A missense mutation in TUBD1 is associated with high juvenile mortality in Braunvieh and Fleckvieh cattle. BMC Genomics, 17(1):1-13.

Altenhoff, Adrian M; et al (2016). Standardized benchmarking in the quest for orthologs. Nature Methods, 13(5):425-430.

Soneson, Charlotte; Robinson, Mark D (2016). iCOBRA: open, reproducible, standardized and live method benchmarking. Nature Methods, 13(4):283.

Bheema Lingeswara Reddy, I N; Chandrasekhar, K; Zewdu, Y; Dinoor, A; Keller, B; Ben-David, R (2016). Identification and genetic mapping of PmAF7DS a powdery mildew resistance gene in bread wheat (Triticum aestivum L.). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 129(6):1127-1137.

Grunert, Tom; Stephan, Roger; Ehling-Schulz, Monika; Johler, Sophia (2016). Fourier transform infrared spectroscopy enables rapid differentiation of fresh and frozen/thawed chicken. Food Control, 60:361-364.

Sihto, Henna-Maria; Susilo, Yusak Budi; Tasara, Taurai; Rådström, Peter; Stephan, Roger; Schelin, Jenny; Johler, Sophia (2016). Effect of sodium nitrite and regulatory mutations Δagr, ΔsarA, and ΔsigB on the mRNA and protein levels of staphylococcal enterotoxin D. Food Control, 65:37-45.

Schumann, Paul; Kampmann, Andreas; Sauer, Gisa; Lindhorst, Daniel; von See, Constantin; Stoetzer, Marcus; Tavassol, Frank; Gellrich, Nils-Claudius; Rücker, Martin; Essig, Harald (2016). Accelerated vascularization of tissue engineering constructs in vivo by preincubated co-culture of aortic fragments and osteoblasts. Biochemical Engineering Journal, 105(Part A):230-241.

Mählmann, Laura; Röcke, Christina; Brand, Angela; Hafen, Ernst; Vayena, Effy (2016). Attitudes towards personal genomics among older Swiss adults: An exploratory study. Applied and Translational Genomics, 8:9-15.

Sarno, Eleonora; Fierz, Lisa; Zweifel, Claudio; Tasara, Taurai; Stephan, Roger (2016). Characteristics of Listeria monocytogenes isolated from tonsils of slaughtered fattening pigs in Switzerland. Journal für Verbraucherschutz und Lebensmittelsicherheit, 11(1):19-23.

Geiger, Madeleine; Haussman, Sinah (2016). Cranial suture closure in domestic dog breeds and relations to skull morphology. Anatomical Record, 299(4):412-420.

Taylor-Brown, Alyce; Bachmann, Nathan L; Borel, Nicole; Polkinghorne, Adam (2016). Culture- independent genomic characterisation of Candidatus Chlamydia sanzinia, a novel uncultivated bacterium infecting snakes. BMC Genomics, 17(710):online.

Freimoser, Florian Matthias; Hilber-Bodmer, Maja; Brunisholz, René; Drissner, David (2016). Direct identification of Monilinia brown rot fungi on infected fruits by matrix-assisted laser desorption/ionization (MALDI) mass spectrometry. Chemical and Biological Technologies in Agriculture, 3:7.

Wagner, Andreas; Ortman, Scott; Maxfield, Robert (2016). From the primordial soup to self-driving cars: standards and their role in natural and technological innovation. Journal of the Royal Society Interface, 13(115):20151086.

Čuklina, Jelena; Hahn, Julia; Imakaev, Maxim; Omasits, Ulrich; Förstner, Konrad U; Ljubimov, Nikolay; Goebel, Melanie; Pessi, Gabriella; Fischer, Hans-Martin; Ahrens, Christian H; Gelfand, Mikhail S; Evguenieva-Hackenberg, Elena (2016). Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis – a rich resource to identify new transcripts, proteins and to study gene regulation. BMC Genomics:17:302.

Sihto, Henna-Maria; Tasara, Taurai; Stephan, Roger; Johler, Sophia (2016). Growth behavior and temporal enterotoxin D expression of Staphylococcus aureus strains under glucose and lactic acid stress. Food Control, 62:69-73.

Vogt, Cédric M; Schraner, Elisabeth M; Aguilar, Claudio; Eichwald, Catherine (2016). Heterologous expression of antigenic peptides in Bacillus subtilis biofilms. Microbial Cell Factories, 15:137.

Santourlidis, Simeon; Ghanjati, Foued; Beermann, Agnes; Hermanns, Thomas; Poyet, Cédric (2016). IDLN-MSP: Idiolocal normalization of real-time methylation-specific PCR for genetic imbalanced DNA specimens. BioTechniques, 60(2):84-87.

Karme, A; Rannikko, J; Kallonen, A; Clauss, Marcus; Fortelius, Mikael (2016). Mechanical modelling of tooth wear. Journal of the Royal Society Interface, 13:20160399.

Chekkat, Neila; Dahm, Georges; Chardon, Edith; Wantz, May; Sitz, Justine; Decossas, Marion; Lambert, Olivier; Frisch, Benoit; Rubbiani, Riccardo; Gasser, Gilles; Guichard, Gilles; Fournel, Sylvie; Bellemin-Laponnaz, Stéphane (2016). N-Heterocyclic Carbene–Polyethylenimine Platinum Complexes with Potent in Vitro and in Vivo Antitumor Efficacy. Bioconjugate Chemistry, 27(8):1942-1948.

Margot, H; Ebner, R; Peterhans, S; Stephan, Roger (2016). Occurrence of Salmonella, L. monocytogenes, Shigatoxin-producing E. coli and ESBL-producing Enterobacteriaceae in sprout samples collected from the Swiss market. Journal für Verbraucherschutz und Lebensmittelsicherheit, 11(2):155-157.

Duan, Can; Tanguy, Quentin; Pozzi, Antonio; Xie, Huikai (2016). Optical coherence tomography endoscopic probe based on tilted MEMS mirror. Biomedical Optics Express, 7(9):3345-3354.

Nasseri, Nassim; Kleiser, Stefan; Ostojic, Daniel; Karen, Tanja; Wolf, Martin (2016). Quantifying the effect of adipose tissue in muscle oximetry by near infrared spectroscopy. Biomedical Optics Express, 7(11):4605.

Guldimann, Claudia; Boor, Kathryn J; Wiedmann, Martin; Guariglia-Oropeza, Veronica (2016). Resilience in the face of uncertainty: Sigma Factor B fine-tunes gene expression to support homeostasis in gram-positive bacteria. Applied and Environmental Microbiology, 82(15):4456-4469.

Schiavi, Elisa; Gleinser, Marita; Molloy, Evelyn; Groeger, David; Frei, Remo; Ferstl, Ruth; Rodriguez-Perez, Noelia; Ziegler, Mario; Grant, Ray; Moriarty, Thomas Fintan; Plattner, Stephan; Healy, Selena; O'Connell Motherway, Mary; Akdis, Cezmi A; Roper, Jennifer; Altmann, Friedrich; van Sinderen, Douwe; O'Mahony, Liam (2016). The surface-associated exopolysaccharide of bifidobacterium longum 35624 plays an essential role in dampening host proinflammatory responses and repressing local TH17 responses. Applied and Environmental Microbiology, 82(24):7185-7196.

Krattinger, Simon G; Sucher, Justine; Selter, Liselotte L; Chauhan, Harsh; Zhou, Bo; Tang, Mingzhi; Upadhyaya, Narayana M; Mieulet, Delphine; Guiderdoni, Emmanuel; Weidenbach, Denise; Schaffrath, Ulrich; Lagudah, Evans S; Keller, Beat (2016). The wheat durable, multipathogen resistance gene Lr34 confers partial blast resistance in rice. Plant Biotechnology Journal, 14(5):1261-1268.


Imstepf, Sebastian; Pierroz, Vanessa; Raposinho, Paula; Bauwens, Matthias; Felber, Michael; Fox, Thomas; Shapiro, Adam B; Freudenberg, Robert; Fernandes, Célia; Gama, Sofia; Gasser, Gilles; Motthagy, Felix; Santos, Isabel R; Alberto, Roger (2015). Nuclear Targeting with an Auger Electron Emitter Potentiates the Action of a Widely Used Antineoplastic Drug. Bioconjugate Chemistry, 26(12):2397-2407.

Gui, Ting; Gai, Zhibo (2015). Genome-wide profiling to analyze the effects of FXR activation on mouse renal proximal tubular cells. Genomics Data, 6:31-32.

Merten, Hannes; Brandl, Fabian; Plückthun, Andreas; Zangemeister-Wittke, Uwe (2015). Antibody-drug conjugates for tumor targeting-novel conjugation chemistries and the promise of non-igg binding proteins. Bioconjugate Chemistry, 26(11):2176-2185.

Mayrhofer, Johannes M; Haiss, Florent; Haenni, Dominik; Weber, Stefan; Zuend, Marc; Barrett, Matthew J P; Ferrari, Kim David; Maechler, Philipp; Saab, Aiman S; Stobart, Jillian L; Wyss, Matthias T; Johannssen, Helge; Osswald, Harald; Palmer, Lucy M; Revol, Vincent; Schuh, Claus-Dieter; Urban, Claus; Hall, Andrew; Larkum, Matthew E; Rutz-Innerhofer, Edith; Zeilhofer, Hanns Ulrich; Ziegler, Urs; Weber, Bruno (2015). Design and performance of an ultra-flexible two-photon microscope for in vivo research. Biomedical Optics Express, 6(11):4228-4237.

Kramer, Rita; Bielawski, Jacek; Kistner-Griffin, Emily; Othman, Alaa; Alecu, Irina; Ernst, Daniela; Kornhauser, Drew; Hornemann, Thorsten; Spassieva, Stefka (2015). Neurotoxic 1-deoxysphingolipids and paclitaxel-induced peripheral neuropathy. FASEB Journal, 29(11):4461-72.

Biller-Andorno, Nikola; Grimm, Herwig; Walker, Rebecca L (2015). Professionalism and ethics in animal research. Nature Biotechnology, 33(10):1027-1028.

Singh, Nidhi; Saha, Prasenjit; Rajkumar, Karthik; Abraham, Jayanthi (2015). Biogenic strain of silver and selenium nanoparticles by pseudomonas fluorescens and cladosporium sp. JAPSK3 isolated from coal mine samples and their antimicrobial activity. International Journal of Nanoscience, 14(5 & 6):1550017.

Bradbury, Andrew R M; Plückthun, Andreas (2015). Getting to reproducible antibodies: the rationale for sequenced recombinant characterized reagents. Protein Engineering, Design & Selection, 28(10):303-305.

Gut, Gabriele; Tadmor, Michelle D; Pe'er, Dana; Pelkmans, Lucas; Liberali, Prisca (2015). Trajectories of cell-cycle progression from fixed cell populations. Nature Methods, 12(10):951-954.

Dove, Edward S; et al (2015). An Appeal to the Global Health Community for a Tripartite Innovation: An "Essential Diagnostics List," "Health in All Policies," and "See-Through 21(st) Century Science and Ethics". Omics : a journal of integrative biology, 19(8):435-442.

König, Iwo; Zarrine-Afsar, Arash; Aznauryan, Mikayel; Soranno, Andrea; Wunderlich, Bengt; Dingfelder, Fabian; Stüber, Jakob C; Plückthun, Andreas; Nettels, Daniel; Schuler, Benjamin (2015). Single-molecule spectroscopy of protein conformational dynamics in live eukaryotic cells. Nature Methods, 12(8):773-779.

Harapin, Jan; Börmel, Mandy; Sapra, K Tanuj; Brunner, Damian; Kaech, Andres; Medalia, Ohad (2015). Structural analysis of multicellular organisms with cryo-electron tomography. Nature Methods, 12(7):634-636.

Milleret, Vincent; Buzzi, Stefano; Gehrig, Peter; Ziogas, Algirdas; Grossmann, Jonas; Schilcher, Katrin; Zinkernagel, Annelies S; Zucker, Arik; Ehrbar, Martin (2015). Protein adsorption steers blood contact activation on engineered cobalt chromium alloy oxide layers. Acta Biomaterialia, 24:343-351.

Yan, Jing; Almilaji, Ahmad; Schmid, Evi; Elvira, Bernat; Shimshek, Derya R; van der Putten, Herman; Wagner, Carsten A; Shumilina, Ekaterina; Lang, Florian (2015). Leucine-rich repeat kinase 2-sensitive Na+/Ca2+ exchanger activity in dendritic cells. FASEB Journal, 29(5):1701-1710.

Novak, Domen; Riener, Robert (2015). Predicting targets of human reaching motions with an arm rehabilitation exoskeleton. Biomedical sciences instrumentation, 51:385-392.

Jessberger, Sebastian (2015). Special issue for stem cell metabolism: be quiet, grow, and differentiate. Frontiers in Biology, 10(2):99.

Egloff, Pascal; Deluigi, Mattia; Heine, Philipp; Balada, Stefanie; Plückthun, Andreas (2015). A cleavable ligand column for the rapid isolation of large quantities of homogeneous and functional neurotensin receptor 1 variants from E. coli. Protein Expression and Purification, 108:106-114.

Knobloch, Marlen; Jessberger, Sebastian (2015). Metabolic control of adult neural stem cell behavior. Frontiers in Biology, 10(2):100-106.

Friedel, Thorsten; Hanisch, Lydia J; Muth, Anke; Honegger, Annemarie; Abken, Hinrich; Plückthun, Andreas; Buchholz, Christian J; Schneider, Irene C (2015). Receptor-targeted lentiviral vectors are exceptionally sensitive toward the biophysical properties of the displayed single-chain Fv. Protein Engineering, Design & Selection, 28(4):93-106.

Kopf, Brigitte S; Schipanski, Angela; Rottmar, Markus; Berner, Simon; Maniura-Weber, Katharina (2015). Enhanced differentiation of human osteoblasts on Ti surfaces pre-treated with human whole blood. Acta Biomaterialia, 19:180-190.

Walker, Robert A; Sharman, Philippa A; Miller, Catherine M; Lippuner, Christoph; Okoniewski, Michal; Eichenberger, Ramon M; Ramakrishnan, Chandra; Brossier, Fabien; Deplazes, Peter; Hehl, Adrian B; Smith, Nicholas C (2015). RNA Seq analysis of the Eimeria tenella gametocyte transcriptome reveals clues about the molecular basis for sexual reproduction and oocyst biogenesis. BMC Genomics, 16(1):94.

Hehl, Adrian B; Basso, Walter U; Lippuner, Christoph; Ramakrishnan, Chandra; Okoniewski, Michal; Walker, Robert A; Grigg, Michael E; Smith, Nicholas C; Deplazes, Peter (2015). Asexual expansion of Toxoplasma gondii merozoites is distinct from tachyzoites and entails expression of non-overlapping gene families to attach, invade, and replicate within feline enterocytes. BMC Genomics, 16(1):66.

Ashikaga, H; Aguilar-Rodríguez, José; Gorsky, S; Lusczek, E; Marquitti, F M D; Thompson, B; Wu, D; Garland, J (2015). Modelling the heart as a communication system. Journal of the Royal Society. Interface, 12(105):20141201.

Hiram-Bab, Sahar; Liron, Tamar; Deshet-Unger, Naamit; Mittelman, Moshe; Gassmann, Max; Rauner, Martina; Franke, Kristin; Wielockx, Ben; Neumann, Drorit; Gabet, Yankel (2015). Erythropoietin directly stimulates osteoclast precursors and induces bone loss. FASEB Journal, 29(5):1890-1900.

Calin, Manuela; Stan, Daniela; Schlesinger, Martin; Simion, Viorel; Deleanu, M; Constantinescu, C A; Gan, A M; Pirvulescu, M M; Butoi, E; Manduteanu, I; Bota, M; Enachescu, M; Borsig, Lubor; Bendas, Gerd; Simionescu, Maya (2015). VCAM-1 directed target-sensitive liposomes carrying CCR2 antagonists bind to activated endothelium and reduce adhesion and transmigration of monocytes. European Journal of Pharmaceutics and Biopharmaceutics, 89:18-29.

Oldenhof, Harriëtte; Heutelbeck, Anna; Blässe, Anne-Kathrin; Bollwein, Heiner; Martinsson, Gunilla; Wolkers, Willem F; Sieme, Harald (2015). Tolerance of spermatozoa to hypotonic stress: role of membrane fluidity and correlation with cryosurvival. Reproduction, Fertility and Development, 27(2):285-293.

Kreissl Lonfat, Bettina M; Kaufmann, Ina Maria; Rühli, Frank J (2015). A Code of Ethics for Evidence-Based Research With Ancient Human Remains. Anatomical Record, 298(6):1175-1181.

Nietlisbach, Pirmin; Camenisch, Glauco; Bucher, Thomas; Slate, Jon; Keller, Lukas F; Postma, Erik (2015). A microsatellite-based linkage map for song sparrows (Melospiza melodia). Molecular Ecology Resources, 15(6):1486-1496.

Bilgin Sonay, Tugce; Koletou, Malamati; Wagner, Andreas (2015). A survey of tandem repeat instabilities and associated gene expression changes in 35 colorectal cancers. BMC Genomics, 16(702):online.

Smith, Kevin; Li, Yunpeng; Piccinini, Filippo; Csucs, Gabor; Balazs, Csaba; Bevilacqua, Alessandro; Horvath, Peter (2015). CIDRE: an illumination-correction method for optical microscopy. Nature Methods, 12(5):404-406.

Sydler, Christina; Öhrström, Lena Maria; Rosendahl, Wilfried; Woitek, Ulrich; Rühli, Frank J (2015). CT-Based Assessment of Relative Soft-Tissue Alteration in Different Types of Ancient Mummies. Anatomical Record, 298(6):1162-1174.

Sydler, Christina. CT-based assessment of relative soft tissue alteration in different types of ancient mummies. 2015, University of Zurich, Faculty of Medicine.

Yan, Q; Wang, J; Gangiredla, J; Cao, Y; Martins, M; Gopinath, Gopal R; Stephan, Roger; Lampel, K; Tall, Ben D (2015). Comparative genotypic and phenotypic analysis of Cronobacter species cultured from four powdered infant formula production facilities: indication of pathoadaptation along the food chain. Applied and Environmental Microbiology, 81(13):4388-4402.

Küffner, Robert; Zach, Neta; Norel, Raquel; Hawe, Johann; Schoenfeld, David; Wang, Liuxia; Li, Guang; Fang, Lilly; Mackey, Lester; Hardiman, Orla; Cudkowicz, Merit; Sherman, Alexander; Ertaylan, Gokhan; Grosse-Wentrup, Moritz; Hothorn, Torsten; van Ligtenberg, Jules; Macke, Jakob H; Meyer, Timm; Schölkopf, Bernhard; Tran, Linh; Vaughan, Rubio; Stolovitzky, Gustavo; Leitner, Melanie L (2015). Crowdsourced analysis of clinical trial data to predict amyotrophic lateral sclerosis progression. Nature Biotechnology, 33(1):51-57.

Szövényi, Peter; Perroud, Pierre-François; Symeonidi, Aikaterini; Stevenson, Sean; Quatrano, Ralph S; Rensing, Stefan A; Cuming, Andrew C; McDaniel, Stuart F (2015). De novo assembly and comparative analysis of the Ceratodon purpureus transcriptome. Molecular Ecology Resources, 15(1):203-215.

Petrella, V; Aceto, S; Musacchia, F; Colonna, V; Robinson, Mark D; Benes, V; Cicotti, G; Bongiorno, G; Gradoni, L; Volf, P; Salvemini, M (2015). De novo assembly and sex-specific transcriptome profiling in the sand fly Phlebotomus perniciosus (Diptera, Phlebotominae), a major Old World vector of Leishmania infantum. BMC Genomics, 16:847.

Gay, Max Hans-Peter; Valenta, Tomas; Herr, Patrick; Paratore-Hari, Lisette; Basler, Konrad; Sommer, Lukas (2015). Distinct adhesion-independent functions of β-catenin control stage-specific sensory neurogenesis and proliferation. BMC Biology, 13(24):online.

Zweifel, Claudio; Althaus, Denise; Stephan, Roger (2015). Effects of slaughter operations on the microbiological contamination of broiler carcasses in three abattoirs. Food Control, 51:37-42.

Kivelio, A; Ochsenbein-Koelble, N; Zimmermann, R; Ehrbar, M (2015). Engineered cell instructive matrices for fetal membrane healing. Acta Biomaterialia, 15:1-10.

Amselem, Joelle; Vigouroux, Marielle; Oberhaensli, Simone; Brown, James K M; Bindschedler, Laurence V; Skamnioti, Pari; Wicker, Thomas; Spanu, Pietro D; Quesneville, Hadi; Sacristán, Soledad (2015). Evolution of the EKA family of powdery mildew avirulence-effector genes from the ORF 1 of a LINE retrotransposon. BMC Genomics, 16(917):online.

van Ginkel, Sander; de Haan, Arnold; Woerdeman, Jorn; Vanhees, Luc; Serné, Erik; de Koning, Jos; Flück, Martin (2015). Exercise intensity modulates capillary perfusion in correspondence with ACE I/D modulated serum angiotensin II levels. Applied and Translational Genomics, 4:33-37.

Agca, Cavit; Boldt, Karsten; Gubler, Andrea; Meneau, Isabelle; Corpet, Armelle; Samardzija, Marijana; Stucki, Manuel; Ueffing, Marius; Grimm, Christian (2015). Expression of leukemia inhibitory factor in Müller glia cells is regulated by a redox-dependent mRNA stability mechanism. BMC Biology, 13(1):30.

Zurfluh, Katrin; Nüesch-Inderbinen, Magdalena; Morach, Marina; Zihler Berner, Annina; Stephan, Roger (2015). Extended-spectrum-β-lactamase-producing Enterobacteriaceae isolated from vegetables imported from the Dominican Republic, India, Thailand, and Vietnam. Applied and Environmental Microbiology, 81(9):3115-3120.

Tybrandt, Klas; Vörös, Janos (2015). Fast and Efficient Fabrication of Intrinsically Stretchable Multilayer Circuit Boards by Wax Pattern Assisted Filtration. Small, 12(2):180-184.

Rajendran, Prayanka; Kaufmann, Silvan; Vörös, János; Zenobi-Wong, Marcy; Demkó, László (2015). Femtomolar oligonucleotide detection by a one-step gold nanoparticle-based assay. Colloids and Surfaces. B, Biointerfaces, 135:193-200.

Chhuneja, Parveen; Yadav, Bharat; Stirnweis, Daniel; Hurni, Severine; Kaur, Satinder; Elkot, Ahmed Fawzy; Keller, Beat; Wicker, Thomas; Sehgal, Sunish; Gill, Bikram S; Singh, Kuldeep (2015). Fine mapping of powdery mildew resistance genes PmTb7A.1 and PmTb7A.2 in Triticum boeoticum (Boiss.) using the shotgun sequence assembly of chromosome 7AL. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 128(10):2099-2111.

Stephan, Roger; Althaus, Denise; Kiefer, Sabine; Lehner, Angelika; Hatz, Christoph; Schmutz, C; Jost, Marianne; Gerber, N; Baumgartner, Andreas; Hächler, Herbert; Mäusezahl-Feuz, Mirjam (2015). Foodborne transmission of Listeria monocytogenes via ready-to-eat salad: a nationwide outbreak in Switzerland, 2013-2014. Food Control, 57:14-17.

Pflueger, Dorothee; Mittmann, Christiane; Dehler, Silvia; Rubin, Mark A; Moch, Holger; Schraml, Peter (2015). Functional characterization of BC039389-GATM and KLK4-KRSP1 chimeric read-through transcripts which are up-regulated in renal cell cancer. BMC Genomics, 16(247):online.

Musso, G; Mosimann, C; Panáková, D; Burger, A; Zhou, Y; Zon, L I; MacRae, C A (2015). Generating and evaluating a ranked candidate gene list for potential vertebrate heart field regulators. Genomics Data, 6:199-201.

Mader, Kevin S; Donahue, Leah Rae; Müller, Ralph; Stampanoni, Marco (2015). High-throughput phenotyping and genetic linkage of cortical bone microstructure in the mouse. BMC Genomics, 16(493):online.

Russo, Giancarlo; Patrignani, Andrea; Poveda, Lucy; Hoehn, Frederic; Scholtka, Bettina; Schlapbach, Ralph; Garvin, Alex M (2015). Highly sensitive, non-invasive detection of colorectal cancer mutations using single molecule, third generation sequencing. Applied and Translational Genomics, 7:32-39.

Papageorgopoulou, Christina; Link, Karl; Rühli, Frank J (2015). Histology of a woolly mammoth (Mammuthus primigenius) preserved in Permafrost, Yamal Peninsula, Northwest Siberia. Anatomical Record, 298(6):1059-1071.

Zemke, Martina; Draganova, Kalina; Klug, Annika; Schöler, Anne; Zurkirchen, Luis; Gay, Max Hans-Peter; Cheng, Phil; Koseki, Haruhiko; Valenta, Tomas; Schübeler, Dirk; Basler, Konrad; Sommer, Lukas (2015). Loss of Ezh2 promotes a midbrain-to-forebrain identity switch by direct gene derepression and Wnt-dependent regulation. BMC Biology, 13:103.

Papageorgopoulou, Christina; Shved, Natallia; Wanek, Johann; Rühli, Frank J (2015). Modeling ancient egyptian mummification on fresh human tissue: macroscopic and histological aspects. Anatomical Record, 298(6):974-987.

van Meulen, F B; Klaassen, B; Held, J; Reenalda, J; Buurke, J H; van Beijnum, B J; Luft, A; Veltink, P H (2015). Objective evaluation of the quality of movement in daily life after stroke. Frontiers in Bioengineering and Biotechnology, 3:210.

Ebner, Rebecca; Stephan, Roger; Althaus, Denise; Brisse, S; Maury, M; Tasara, Taurai (2015). Phenotypic and genotypic characteristics of Listeria monocytogenes strains isolated during 2011-2014 from different food matrices in Switzerland. Food Control, (57):321-326.

Ebner, Rebecca Rosa. Phenotypic and genotypic characteristics of Listeria monocytogenes strains isolated during 2011-2014 from different food matrices in Switzerland. 2015, University of Zurich, Vetsuisse Faculty.

Hunziker, Lukas; Bönisch, Denise; Groenhagen, Ulrike; Bailly, Aurélien; Schulz, Stefan; Weisskopf, Laure (2015). Pseudomonas Strains Naturally Associated with Potato Plants Produce Volatiles with High Potential for Inhibition of Phytophthora infestans. Applied and Environmental Microbiology, 81(3):821-830.

Portevin, Damien; Pflüger, Valentin; Otieno, Patricia; Brunisholz, René; Vogel, Guido; Daubenberger, Claudia (2015). Quantitative whole-cell MALDI-TOF MS fingerprints distinguishes human monocyte sub-populations activated by distinct microbial ligands. BMC Biotechnology, 15(24):online.

Lindsay, Kaitlin E; Rühli, Frank J; Deleon, Valerie Burke (2015). Revealing the face of an ancient egyptian: synthesis of current and traditional approaches to evidence-based facial approximation. Anatomical Record, 298(6):1144-1161.

Copetti, Dario; Zhang, Jianwei; El Baidouri, Moaine; Gao, Dongying; Wang, Jun; Barghini, Elena; Cossu, Rosa M; Angelova, Angelina; Maldonado L, Carlos E; Roffler, Stefan; Ohyanagi, Hajime; Wicker, Thomas; Fan, Chuanzhu; Zuccolo, Andrea; Chen, Mingsheng; Costa de Oliveira, Antonio; Han, Bin; Henry, Robert; Hsing, Yue-ie; Kurata, Nori; Wang, Wen; Jackson, Scott A; Panaud, Olivier; Wing, Rod A (2015). RiTE database: a resource database for genus-wide rice genomics and evolutionary biology. BMC Genomics, 16(538):online.

Krismer, Jasmin; Sobek, Jens; Steinhoff, Robert F; Fagerer, Stephan R; Pabst, Martin; Zenobi, Renato (2015). Screening of Chlamydomonas reinhardtii Populations with Single-Cell Resolution by Using a High-Throughput Microscale Sample Preparation for Matrix-Assisted Laser Desorption Ionization Mass Spectrometry. Applied and Environmental Microbiology, 81(16):5546-5551.

Rühli, Frank J (2015). Short Review: Magnetic Resonance Imaging of Ancient Mummies. Anatomical Record, 298(6):1111-1115.

Lynnerup, Niels; Rühli, Frank J (2015). Short review: the use of conventional X-rays in mummy studies. Anatomical Record, 298(6):1085-1087.

Öhrström, Lena; Fischer, Bernd M; Bitzer, Andreas; Wallauer, Jan; Walther, Markus; Rühli, Frank (2015). Terahertz imaging modalities of ancient egyptian mummified objects and of a naturally mummified rat. Anatomical Record, 298(6):1135-1143.

Monge, Janet M; Rühli, Frank J (2015). The anatomy of the mummy: mortui viventes docent—when ancient mummies speak to modern doctors. Anatomical Record, 298(6):935-940.

Quijano, Carolina Diaz; Brunner, Susanne; Keller, Beat; Gruissem, Wilhelm; Sautter, Christof (2015). The environment exerts a greater influence than the transgene on the transcriptome of field-grown wheat expressing the Pm3b allele. Transgenic research, 24(1):87-97.

Norling, Martin; Bishop, Richard P; Pelle, Roger; Qi, Weihong; Henson, Sonal; Drábek, Elliott F; Tretina, Kyle; Odongo, David; Mwaura, Stephen; Njoroge, Thomas; Bongcam-Rudloff, Erik; Daubenberger, Claudia A; Silva, Joana C (2015). The genomes of three stocks comprising the most widely utilized live sporozoite Theileria parva vaccine exhibit very different degrees and patterns of sequence divergence. BMC Genomics, 16(729):online.

Milella, Marco; Zollikofer, Christoph P E; Ponce de León, Marcia S (2015). Virtual reconstruction and geometric morphometrics as tools for paleopathology: A new approach to study rare developmental disorders of the skeleton. Anatomical Record, 298(2):335-345.

Lardi, Martina; Aguilar, Claudio; Pedrioli, Alessandro; Omasits, Ulrich; Suppiger, Angela; Cárcamo-Oyarce, Gerardo; Schmid, Nadine; Ahrens, Christian H; Eberl, Leo; Pessi, Gabriella (2015). σ54-Dependent Response to Nitrogen Limitation and Virulence in Burkholderia cenocepacia Strain H111. Applied and Environmental Microbiology, 81(12):4077-4089.

Seiler, Roger; Rühli, Frank J (2015). “The Opening of the Mouth”-A New Perspective for an Ancient Egyptian Mummification Procedure. Anatomical Record, 298(6):1208-1216.


Rämö, Pauli; Drewek, Anna; Arrieumerlou, Cécile; Beerenwinkel, Niko; Ben-Tekaya, Houchaima; Cardel, Bettina; Casanova, Alain; Conde-Alvarez, Raquel; Cossart, Pascale; Csúcs, Gábor; Eicher, Simone; Emmenlauer, Mario; Greber, Urs; Hardt, Wolf-Dietrich; Helenius, Ari; Kasper, Christoph; Kaufmann, Andreas; Kreibich, Saskia; Kühbacher, Andreas; Kunszt, Peter; Low, Shyan Huey; Mercer, Jason; Mudrak, Daria; Muntwiler, Simone; Pelkmans, Lucas; Pizarro-Cerdá, Javier; Podvinec, Michael; Pujadas, Eva; Rinn, Bernd; Rouilly, Vincent; Schmich, Fabian; Siebourg-Polster, Juliane; Snijder, Berend; Stebler, Michael; Studer, Gabriel; Szczurek, Ewa; Truttmann, Matthias; von Mering, Christian; Vonderheit, Andreas; Yakimovich, Artur; Bühlmann, Peter; Dehio, Christoph (2014). Simultaneous analysis of large-scale RNAi screens for pathogen entry. BMC Genomics, 15:1162.

Stefan, Nikolas; Zimmermann, Martina; Simon, Manuel; Zangemeister-Wittke, Uwe; Plückthun, Andreas (2014). Novel prodrug-like fusion toxin with protease-sensitive bioorthogonal PEGylation for tumor targeting. Bioconjugate Chemistry, 25(12):2144-2156.

Rimann, Markus; Laternser, Sandra; Gvozdenovic, Ana; Muff, Roman; Fuchs, Bruno; Kelm, Jens M; Graf-Hausner, Ursula (2014). An in vitro osteosarcoma 3D microtissue model for drug development. Journal of Biotechnology, 189:129-135.

Soste, Martin; Hrabakova, Rita; Wanka, Stefanie; Melnik, Andre; Boersema, Paul; Maiolica, Alessio; Wernas, Timon; Tognetti, Marco; von Mering, Christian; Picotti, Paola (2014). A sentinel protein assay for simultaneously quantifying cellular processes. Nature Methods, 11(10):1045-1048.

Hall, Benjamin A; Jackson, Ethan; Hajnal, Alex; Fisher, Jasmin (2014). Logic programming to predict cell fate patterns and retrodict genotypes in organogenesis. Journal of the Royal Society. Interface, 11(98):20140245.

Nakajima, Kohei; Li, Tao; Hauser, Helmut; Pfeifer, Rolf (2014). Exploiting short-term memory in soft body dynamics as a computational resource. Journal of the Royal Society. Interface, 11(100):20140437.

Bürgi, Sandra; Seuwen, Aline; Keist, Ruth; Vom Berg, Johannes; Grandjean, Joanes; Rudin, Markus (2014). In vivo imaging of hypoxia-inducible factor regulation in a subcutaneous and orthotopic GL261 glioma tumor model using a reporter gene assay. Molecular Imaging, 13(0):1-11.

Riha, Juliane; Brenner, Stefan; Böhmdorfer, Michaela; Giessrigl, Benedikt; Pignitter, Marc; Schueller, Katharina; Thalhammer, Theresia; Stieger, Bruno; Somoza, Veronika; Szekeres, Thomas; Jäger, Walter (2014). Resveratrol and its major sulfated conjugates are substrates of organic anion transporting polypeptides (OATPs): impact on growth of ZR-75-1 breast cancer cells. Molecular Nutrition & Food Research, 58(9):1830-1842.

Wagner, Andreas; Rosen, William (2014). Spaces of the possible: Universal Darwinism and the wall between technological and biological innovation. Journal of the Royal Society. Interface, 11(97):20131190.

Krehel, Marek; Wolf, Martin; Boesel, Luciano F; Rossi, René M; Bona, Gian-Luca; Scherer, Lukas J (2014). Development of a luminous textile for reflective pulse oximetry measurements. Biomedical Optics Express, 5(8):2537-2547.

Li, Xiang; He, Jiankang; Bian, Weiguo; Li, Zheng; Zhang, Wenyou; Li, Dichen; Snedeker, Jess G (2014). A novel silk-based artificial ligament and tricalcium phosphate/polyether ether ketone anchor for anterior cruciate ligament reconstruction - safety and efficacy in a porcine model. Acta Biomaterialia, 10(8):3696-3704.

Gekenidis, Maria-Theresia; Studer, Patrick; Wüthrich, Simone; Brunisholz, René; Drissner, David (2014). Beyond the matrix-assisted laser desorption ionization (MALDI) biotyping workflow: in search of microorganism-specific tryptic peptides enabling discrimination of subspecies. Applied and Environmental Microbiology, 80(14):4234-4241.

Siyahhan, Bercan; Knobloch, Verena; de Zélicourt, Diane; Asgari, Mahdi; Schmid Daners, Marianne; Poulikakos, Dimos; Kurtcuoglu, Vartan (2014). Flow induced by ependymal cilia dominates near-wall cerebrospinal fluid dynamics in the lateral ventricles. Journal of the Royal Society Interface, 11(94):20131189.

Fessel, Gion; Cadby, Jennifer; Wunderli, Stefania; van Weeren, René; Snedeker, Jess G (2014). Dose- and time-dependent effects of genipin crosslinking on cell viability and tissue mechanics - toward clinical application for tendon repair. Acta Biomaterialia, 10(5):1897-1906.

Dudnik, Alexey; Bigler, Laurent; Dudler, Robert (2014). Production of Proteasome Inhibitor Syringolin A by the Endophyte Rhizobium sp Strain AP16. Applied and Environmental Microbiology, 80(12):3741-3748.

Koch, M; Delmotte, N; Ahrens, C H; Omasits, U; Schneider, K; Danza, F; Padhi, B; Murset, V; Braissant, O; Vorholt, J A; Hennecke, H; Pessi, G (2014). A Link between Arabinose Utilization and Oxalotrophy in Bradyrhizobium japonicum. Applied and Environmental Microbiology, 80(7):2094-2101.

Sripakdeevong, Parin; Cevec, Mirko; Chang, Andrew T; Erat, Michèle C; Ziegeler, Melanie; Zhao, Qin; Fox, Georg E; Gao, Xiaolian; Kennedy, Scott D; Kierzek, Ryszard; Nikonowicz, Edward P; Schwalbe, Harald; Sigel, Roland K O; Turner, Douglas H; Das, Rhiju (2014). Structure determination of noncanonical RNA motifs guided by $^1$H NMR chemical shifts. Nature Methods, 11(4):413-416.

Li, Xiang; He, Jiankang; Bian, Weiguo; Li, Zheng; Li, Dichen; Snedeker, Jess G (2014). A novel silk-TCP-PEEK construct for anterior cruciate ligament reconstruction: an off-the shelf alternative to a bone-tendon-bone autograft. Biofabrication, 6(1):015010.

Tarasava, Katsiaryna; Freisinger, Eva (2014). An optimized intein-mediated protein ligation approach for the efficient cyclization of cysteine-rich proteins. Protein Engineering, Design & Selection, 27(12):481-488.

Scheyer, T M; Desojo, J B; Cerda, I A (2014). Bone Histology of Phytosaur, Aetosaur, and Other Archosauriform Osteoderms (Eureptilia, Archosauromorpha). The Anatomical Record, 297(2):240-260.

Cai, Haoyang; Kumar, Nitin; Bagheri, Homayoun C; von Mering, Christian; Robinson, Mark D; Baudis, Michael (2014). Chromothripsis-like patterns are recurring but heterogeneously distributed features in a survey of 22,347 cancer genome screens. BMC Genomics, 15:82.

Rongvaux, A; Willinger, T; Martinek, J; Strowig, T; Gearty, S V; Teichmann, L L; Saito, Y; Marches, F; Halene, S; Palucka, A K; Manz, M G; Flavell, R A (2014). Development and function of human innate immune cells in a humanized mouse model. Nature Biotechnology, 32(4):364-372.

Guillaume-Gentil, Orane; Potthoff, Eva; Ossola, Dario; Franz, Clemens M; Zambelli, Tomaso; Vorholt, Julia A (2014). Force-controlled manipulation of single cells: from AFM to FluidFM. Trends in Biotechnology, 32(7):381-388.

Greminger, Maja P; Stölting, Kai N; Nater, Alexander; Goossens, Benoit; Arora, Natasha; Bruggmann, Rémy; Patrignani, Andrea; Nussberger, Beatrice; Sharma, Reeta; Kraus, Robert H S; Ambu, Laurentius N; Singleton, Ian; Chikhi, Lounes; van Schaik, Carel P; Krützen, Michael (2014). Generation of SNP datasets for orangutan population genomics using improved reduced-representation sequencing and direct comparisons of SNP calling algorithms. BMC Genomics, 15:16.

Gai, Zhibo (2014). Genome-wide profiling to analyze the effects of high fat diet induced obesity on renal gene expression in mouse with reduced renal mass. Genomics Data, 2:42-43.

Shatalina, Margarita; Messmer, Monika; Feuillet, Catherine; Mascher, Fabio; Paux, Etienne; Choulet, Frédéric; Wicker, Thomas; Keller, Beat (2014). High-resolution analysis of a QTL for resistance to Stagonospora nodorum glume blotch in wheat reveals presence of two distinct resistance loci in the target interval. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 127(3):573-586.

Giesen, Charlotte; Wang, Hao A O; Schapiro, Denis; Zivanovic, Nevena; Jacobs, Andrea; Hattendorf, Bodo; Schüffler, Peter J; Grolimund, Daniel; Buhmann, Joachim M; Brandt, Simone; Varga, Zsuzsanna; Wild, Peter J; Günther, Detlef; Bodenmiller, Bernd (2014). Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry. Nature Methods, 11(4):417-22.

Rafsanjani, Ahmad; Stiefel, Michael; Jefimovs, Konstantins; Mokso, Rajmund; Derome, Dominique; Carmeliet, Jan (2014). Hygroscopic swelling and shrinkage of latewood cell wall micropillars reveal ultrastructural anisotropy. Journal of the Royal Society Interface, 11(95):20140126.

Müller, Adrienne; Beck, Katharina; Rancic, Zoran; Müller, Cristina; Fischer, Cindy R; Betzel, Thomas; Kaufmann, Philipp A; Schibli, Roger; Krämer, Stefanie D; Ametamey, Simon M (2014). Imaging Atherosclerotic Plaque Inflammation via Folate Receptor Targeting Using a Novel 18F-Folate Radiotracer. Molecular Imaging, 13(1):1-11.

Gade, Miriam; Schuch, Stefanie; Druey, Michel D; Koch, Iring (2014). Inhibitory control in task switching. In: Grange, J; Houghton, G. Task switching and cognitive control. New York: Oxford University Press, 137-159.

Kozma, Peter; Kehl, Florian; Ehrentreich-Förster, Eva; Stamm, Christoph; Bier, Frank F (2014). Integrated planar optical waveguide interferometer biosensors: A comparative review. Biosensors & Bioelectronics, 58:287-307.

Bansal, Urmil; Bariana, Harbans; Wong, Debbie; Randhawa, Mandeep; Wicker, Thomas; Hayden, Matthew; Keller, Beat (2014). Molecular mapping of an adult plant stem rust resistance gene Sr56 in winter wheat cultivar Arina. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 127(6):1441-1448.

Hodel, Corinne; Niklaus, Stephanie; Heidemann, Martina; Klooster, Jan; Kamermans, Maarten; Biehlmaier, Oliver; Gesemann, Matthias; Neuhauss, Stephan C F (2014). Myosin VIIA is a marker for the cone accessory outer segment in zebrafish. Anatomical Record, 297(9):1777-1784.

Sommer, Lukas (2014). Open questions: development of tumor cell heterogeneity and its implications for cancer treatment. BMC Biology, 12:15.

Stephan, Roger; Johler, Sophia; Oesterle, Noemie; Naumann, Gabriele; Vogel, Guido; Pflüger, Valentin (2014). Rapid and reliable species identification of scallops by MALDI-TOF mass spectrometry. Food Control, 46:6-9.

Rutschmann, Christoph; Baumann, Stephan; Cabalzar, Jürg; Luther, Kelvin B; Hennet, Thierry (2014). Recombinant expression of hydroxylated human collagen in Escherichia coli. Applied Microbiology and Biotechnology, 98(10):4445-4455.

Anisimov, Victor N; Herbst, Joshua A; Abramchuk, Andrei N; Latanov, Alexander V; Hahnloser, Richard H R; Vyssotski, Alexei L (2014). Reconstruction of vocal interactions in a group of small songbirds. Nature Methods, 11:1135-1137.

Almouzni, G; et al; Widschwendter, Martin (2014). Relationship between genome and epigenome - challenges and requirements for future research. BMC Genomics, 15:487.

Leucht, Katharina; Fischbeck, Anne; Caj, Michaela; Liebisch, Gerhard; Hartlieb, Eva; Benes, Petr; Fried, Michael; Humpf, Hans-Ulrich; Rogler, Gerhard; Hausmann, Martin (2014). Sphingomyelin and phosphatidylcholine contrarily affect the induction of apoptosis in intestinal epithelial cells. Molecular Nutrition & Food Research, 58(4):782-798.

Agnoli, K; Frauenknecht, C; Freitag, R; Schwager, S; Jenul, C; Vergunst, A; Carlier, A; Eberl, L (2014). The third replicon of members of the Burkholderia cepacia complex, plasmid pC3, plays a role in stress tolerance. Applied and Environmental Microbiology, 80(4):1340-1348.

Allie, Farhahna; Pierce, Erica J; Okoniewski, Michal J; Rey, Chrissie (2014). Transcriptional analysis of South African cassava mosaic virus-infected susceptible and tolerant landraces of cassava highlights differences in resistance, basal defense and cell wall associated genes during infection. BMC Genomics, 15:1006.

Reichler, I M; Hubler, M (2014). Urinary incontinence in the bitch: an update. Reproduction in Domestic Animals, 49(2):75-80.

Gram, A; Boos, A; Kowalewski, M P (2014). Uterine and placental expression of canine oxytocin receptor during pregnancy and normal and induced parturition. Reproduction in Domestic Animals, 49(s2):41-49.


Uebersax, Lorenz; Apfel, Tanja; Nuss, Katja M R; Vogt, Rainer; Yoo Kim, Hyoen; Meinel, Lorenz; Kaplan, David L; Auer, Jörg A; Merkle, Hans P; von Rechenberg, Brigitte (2013). Biocompatibility and osteoconduction of macroporous silk fibroin implants in cortical defects in sheep. European Journal of Pharmaceutics and Biopharmaceutics, 85(1):107-118.

von Rechenberg, Brigitte; Génot, O R; Nuss, Katja; Galuppo, Larry; Fulmer, Mark; Jacobson, Evan; Kronen, Peter W; Zlinszky, Katalin; Auer, Jörg A (2013). Evaluation of four biodegradable, injectable bone cements in an experimental drill hole model in sheep. European Journal of Pharmaceutics and Biopharmaceutics, 85(1):130-138.

Luginbühl, Vera; Zoidis, Evangelios; Meinel, Lorenz; von Rechenberg, Brigitte; Gander, Bruno; Merkle, Hans P (2013). Impact of IGF-I release kinetics on bone healing: A preliminary study in sheep. European Journal of Pharmaceutics and Biopharmaceutics, 85(1):99-106.

Park, C Sehwan; Rehrauer, Hubert; Mansuy, Isabelle M (2013). Genome-wide analysis of H4K5 acetylation associated with fear memory in mice. BMC Genomics, 14:539.

Braun, Simon M G; Jessberger, Sebastian (2013). Adult neurogenesis in the mammalian brain. Frontiers in Biology, 8(3):295-304.

Woodruff, Kristina; Fidalgo, Luis M; Gobaa, Samy; Lutolf, Matthias P; Maerkl, Sebastian J (2013). Live Mammalian Cell Arrays. Nature Methods, 10(6):550-552.

Diederich, Vincent E G; Studer, Peter; Kern, Anita; Lattuada, Marco; Storti, Giuseppe; Sharma, Ram I; Snedeker, Jess G; Morbidelli, Massimo (2013). Bioactive polyacrylamide hydrogels with gradients in mechanical stiffness. Biotechnology and Bioengineering, 110(5):1508-1519.

Hotz, Hansjürg; Beerli, Peter; Uzzell, Thomas; Guex, Gaston-Denis; Pruvost, Nicolas B M; Schreiber, Robert; Plötner, Jörg (2013). Balancing a cline by influx of migrants: a genetic transition in water frogs of Eastern Greece. Journal of Heredity, 104(1):57-71.

Picotti, Paola; Bodenmiller, Bernd; Aebersold, Ruedi (2013). Proteomics meets the scientific method. Nature Methods, 10(1):24-27.

Vayena, Effy; Prainsack, Barbara (2013). The challenge of personal genomics in Germany. Nature Biotechnology, 31(1):16-17.

Tarnawski, Wojciech; Kurtcuoglu, Vartan; Lorek, Pawel; Bodych, Marcin; Rotter, Jan; Muszkieta, Monika; Piwowar, Lukasz; Poulikakos, Dimos; Majkowski, Michal; Ferrari, Aldo (2013). A robust algorithm for segmenting and tracking clustered cells in time-lapse fluorescent microscopy. IEEE Journal of Biomedical and Health Informatics, 17(4):862-869.

Simicevic, Jovan; Schmid, Adrien W; Gilardoni, Paola A; Zoller, Benjamin; Raghav, Sunil K; Krier, Irina; Gubelmann, Carinne; Lisacek, Frédérique; Naef, Felix; Moniatte, Marc; Deplancke, Bart (2013). Absolute quantification of transcription factors during cellular differentiation using multiplexed targeted proteomics. Nature Methods, 10(6):570-576.

Germann, Daniel P; Carbajal, Juan Pablo (2013). Burrowing behaviour of robotic bivalves with synthetic morphologies. Bioinspiration & biomimetics, 8(4):1046009.

Hyttel-Sorensen, Simon; Kleiser, Stefan; Wolf, Martin; Greisen, Gorm (2013). Calibration of a prototype NIRS oximeter against two commercial devices on a blood-lipid phantom. Biomedical Optics Express, 4(9):1662-1672.

Zurfluh, K; Hächler, Herbert; Nüesch-Inderbinen, Magdalena; Stephan, Roger (2013). Characteristics of extended-spectrum beta-lactamase (ESBL)- and carbapenemase-producing Enterobacteriaceae isolated from rivers and lakes in Switzerland. Applied and Environmental Microbiology, 79(9):3021-3026.

Isert, N; Maret, G; Aegerter, C M (2013). Coarsening dynamics of three-dimensional levitated foams: From wet to dry. European Physical Journal. E, Soft matter, 36(10):116.

Zweifel, C; Cernela, N; Stephan, Roger (2013). Detection of the emerging Shiga toxin-producing Escherichia coli O26:H11/H- sequence type 29 (ST29) clone in human patients and healthy cattle in Switzerland. Applied and Environmental Microbiology, 79(17):5411-5413.

Nussberger, Beatrice; Greminger, M P; Grossen, Christine; Keller, Lukas F; Wandeler, Peter (2013). Development of SNP markers identifying European wildcats, domestic cats, and their admixed progeny. Molecular Ecology Resources, 13(3):447-460.

Stinshoff, H; Wilkening, S; Hanstedt, A; Bollwein, H; Wrenzycki, C (2013). Dimethylsulfoxide and conjugated linoleic acids affect bovine embryo development in vitro. Reproduction, Fertility and Development, 59(3):296-301.

Fukazawa, Kyoko; Li, Qiang; Seeger, Stefan; Ishihara, Kazuhiko (2013). Direct observation of selective protein capturing on molecular imprinting substrates. Biosensors & Bioelectronics, 40(1):96-101.

Kovacevic, J; Arguedas-Villa, C; Wozniak, A; Tasara, T; Allen, K J (2013). Examination of food chain-derived L. monocytogenes of different serotypes reveals considerable diversity among inlA genotypes, mutability and adaptation to cold growth. Applied and Environmental Microbiology, 79:1915-1922.

Shatalina, Margarita; Wicker, Thomas; Buchmann, Jan P; Oberhaensli, Simone; Simková, Hana; Doležel, Jaroslav; Keller, Beat (2013). Genotype-specific SNP map based on whole chromosome 3B sequence information from wheat cultivars Arina and Forno. Plant biotechnology journal, 11(1):23-32.

Ansell, Brendan R E; Schnyder, Manuela; Deplazes, Peter; Korhonen, Pasi K; Young, Neil D; Hall, Ross S; Mangiola, Stefano; Boag, Peter R; Hofmann, Andreas; Sternberg, Paul W; Jex, Aaron R; Gasser, Robin B (2013). Insights into the immuno-molecular biology of Angiostrongylus vasorum through transcriptomics-Prospects for new interventions. Biotechnology Advances, 31(8):1486-1500.

Stiefel, P; Zambelli, T; Vorholt, J A (2013). Isolation of optically targeted single bacteria by application of fluidic force microscopy to aerobic anoxygenic phototrophs from the phyllosphere. Applied and Environmental Microbiology, 79(16):4895-4905.

Bartussek, J; Mutlu, A K; Zapotocky, M; Fry, S N (2013). Limit-cycle-based control of the myogenic wingbeat rhythm in the fruit fly Drosophila. Journal of the Royal Society Interface, 10(80)(20121013):10.

Nater, A; Arora, N; Greminger, M P; van Schaik, C P; Singleton, I; Wich, S A; Fredriksson, G; Perwitasari-Farajallah, D; Pamungkas, J; Krützen, M (2013). Marked population structure and recent migration in the critically endangered Sumatran orangutan (Pongo abelii). Journal of Heredity, 104(1):2-13.

Bornhorst, Julia; Meyer, Sören; Weber, Till; Böker, Carolina; Marschall, Talke; Mangerich, Aswin; Beneke, Sascha; Bürkle, Alexander; Schwerdtle, Tanja (2013). Molecular mechanisms of Mn induced neurotoxicity: RONS generation, genotoxicity, and DNA-damage response. Molecular Nutrition & Food Research, 57(7):1255-1269.

Buerzle, W; Haller, C M; Jabareen, M; Egger, J; Mallik, A S; Ochsenbein-Kölble, N; Ehrbar, M; Mazza, E (2013). Multiaxial mechanical behavior of human fetal membranes and its relationship to microstructure. Biomechanics and Modeling in Mechanobiology, 12(4):747-762.

Simon, Manuel; Frey, Raphael; Zangemeister-Wittke, Uwe; Plückthun, Andreas (2013). Orthogonal assembly of a designed ankyrin repeat protein-cytotoxin conjugate with a clickable serum albumin module for half-life extension. Bioconjugate Chemistry, 24(11):1955-1966.

Shen, Yunjun; Schottelius, Margret; Zelenka, Karel; De Simone, Mariarosaria; Pohle, Karolin; Kessler, Horst; Wester, Hans-Jurgen; Schmutz, Paul; Alberto, Roger (2013). Orthogonally Protected Artificial Amino Acid as Tripod Ligand for Automated Peptide Synthesis and Labeling with Tc-99m(OH2)(3)(CO)(3)](+). Bioconjugate Chemistry, 24(1):26-35.

Grim, C J; Kotewicz, M L; Power, K A; Gopinath, G; Franco, A A; Jarvis, K G; Yan, Q Q; Jackson, S A; Sathyamoorthy, V; Hu, L; Pagotto, F; Iversen, C; Lehner, A; Stephan, Roger; Fanning, S; Tall, B D (2013). Pan-genome analysis of the emerging foodborne pathogen Cronobacter spp. suggests a species-level bidirectional divergence driven by niche adaptation. BMC Genomics, 14:366.

Gübeli, Raphael J; Laird, Dougal; Ehrbar, Martin; Ritter, Benjamin S; Steinberg, Thorsten; Tomakidi, Pascal; Weber, Wilfried (2013). Pharmacologically tunable polyethylene-glycol-based cell growth substrate. Acta Biomaterialia, 9(9):8272-8278.

Waeckerle-Men, Ying; Mauracher, Andrea; Håkerud, Monika; Mohanan, Deepa; Kündig, Thomas M; Høgset, Anders; Johansen, Pål (2013). Photochemical targeting of antigens to the cytosol for stimulation of MHC class-I-restricted T-cell responses. European Journal of Pharmaceutics and Biopharmaceutics, 85(1):34-41.

Okoniewski, Michal J; Meienberg, Janine; Patrignani, Andrea; Szabelska, Alicja; Matyas, Gabor; Schlapbach, Ralph (2013). Precise breakpoint localization of large genomic deletions using PacBio and Illumina next-generation sequencers. BioTechniques, 54(2):98-100.

Siemieniuch, M J; Jursza, E; Kowalewski, M P; Majewska, M; Skarzynski, D J (2013). Prostaglandin endoperoxide synthase 2 (PTGS2) and prostaglandins F2α and E2 synthases (PGFS and PGES) expression and prostaglandin F2α and E2 secretion following oestrogen and/or progesterone stimulation of the feline endometrium. Reproduction in Domestic Animals, 48(1):72-78.

Gu, Gucci Jijuan; Friedman, Mikaela; Jost, Christian; Johnsson, Kai; Kamali-Moghaddam, Masood; Plückthun, Andreas; Landegren, Ulf; Söderberg, Ola (2013). Protein tag-mediated conjugation of oligonucleotides to recombinant affinity binders for proximity ligation. New biotechnology, 30(2):144-152.

Krattinger, Simon G; Jordan, David R; Mace, Emma S; Raghavan, Chitra; Luo, Ming-Cheng; Keller, Beat; Lagudah, Evans S (2013). Recent emergence of the wheat Lr34 multi-pathogen resistance: insights from haplotype analysis in wheat, rice, sorghum and Aegilops tauschii. Theoretical and Applied Genetics, 126(3):663-672.

Hofmann, S; Hilbe, Monika; Fajardo, R J; Hagenmüller, H; Nuss, Karl; Arras, Margarete; Müller, R; von Rechenberg, Brigitte; Kaplan, D L; Merkle, H P; Meinel, L (2013). Remodeling of tissue-engineered bone structures in vivo. European Journal of Pharmaceutics and Biopharmaceutics, 85(1):119-129.

Zimmermann, R; Braun, F; Achtnich, T; Lambercy, O; Gassert, R; Wolf, M (2013). Silicon photomultipliers for improved detection of low light levels in miniature near-infrared spectroscopy instruments. Biomedical Optics Express, 4(5):659-666.

Vayena, Effy; Tasioulas, John (2013). The ethics of participant-led biomedical research. Nature Biotechnology, 31(9):786-787.

Risk, Joanna M; Selter, Liselotte L; Chauhan, Harsh; Krattinger, Simon G; Kumlehn, Jochen; Hensel, Goetz; Viccars, Libby A; Richardson, Terese M; Buesing, Gabriele; Troller, Anna; Lagudah, Evans S; Keller, Beat (2013). The wheatLr34gene provides resistance against multiple fungal pathogens in barley. Plant Biotechnology Journal, 11(7):847-854.

Wiedenmann, Daniel; Keller, Lukas; Holzer, Lorenz; Stojadinović, Jelena; Münch, Beat; Suarez, Laura; Fumey, Benjamin; Hagendorfer, Harald; Brönnimann, Rolf; Modregger, Peter; Gorbar, Michal; Vogt, Ulrich F; Züttel, Andreas; La Mantia, Fabio; Wepf, Roger; Grobéty, Bernard (2013). Three-dimensional pore structure and ion conductivity of porous ceramic diaphragms. AIChE Journal, 59(5):1446-1457.

Hild, Nora; Tawakoli, Pune N; Halter, Jonas G; Sauer, Bärbel; Buchalla, Wolfgang; Stark, Wendelin J; Mohn, Dirk (2013). pH-dependent antibacterial effects on oral microorganisms through pure PLGA implants and composites with nanosized bioactive glass. Acta Biomaterialia, 9(11):9118-9125.


Nakajima, Kohei; Li, Tao; Kang, Rongjie; Guglielmino, Emanuele; Caldwell, Darwin G; Pfeifer, Rolf (2012). Local information transfer in soft robotic arm. In: IEEE International Conference on Robotics and Biomimetics (ROBIO 2012), Guangzhou, China, 11 December 2012 - 14 December 2012. IEEE, 1273-1280.

Zhao, Qian; Sumioka, Hidenobu; Yu, Xiaoxiang; Nakajima, Kohei; Wang, Zhimin; Pfeifer, Rolf (2012). The function of the spine and its morphological effect in quadruped robot locomotion. In: International conference on Robotics and Biomimetics, Guangzhou, China, 11 December 2012 - 14 December 2012. IEEE, 66-71.

Mackie, Alan; Knulst, Andre; Le, Thuy-My; Bures, Peter; Salt, Louise; Mills, E N Clare; Malcolm, Paul; Andreou, Adrian; Ballmer-Weber, Barbara K (2012). High fat food increases gastric residence and thus thresholds for objective symptoms in allergic patients. Molecular Nutrition & Food Research, 56(11):1708-1714.

Mohanan, D; Gander, B; Kündig, T M; Johansen, P (2012). Encapsulation of antigen in poly(d,l-lactide-co-glycolide) microspheres protects from harmful effects of γ-irradiation as assessed in mice. European Journal of Pharmaceutics and Biopharmaceutics, 80(2):274-281.

Wenger, Michael; Krasnov, Aleksei; Skugor, Stanko; Goldschmidt-Clermont, Elinor; Sattler, Ursula; Afanasyev, Sergey; Segner, Helmut (2012). Estrogen modulates hepatic gene expression and survival of rainbow trout infected with pathogenic bacteria Yersinia ruckeri. Marine biotechnology, 14(5):530-543.

Frei, Andreas P; Jeon, Ock-Youm; Kilcher, Samuel; Moest, Hansjoerg; Henning, Lisa M; Jost, Christian; Plückthun, Andreas; Mercer, Jason; Aebersold, Ruedi; Carreira, Erick M; Wollscheid, Bernd (2012). Direct identification of ligand-receptor interactions on living cells and tissues. Nature biotechnology, 30(10):997-1001.

Bodenmiller, Bernd; Zunder, Eli R; Finck, Rachel; Chen, Tiffany J; Savig, Erica S; Bruggner, Robert V; Simonds, Erin F; Bendall, Sean C; Sachs, Karen; Krutzik, Peter O; Nolan, Garry P (2012). Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators. Nature Biotechnology, 30(9):858-867.

Saalfeld, Stephan; Fetter, Richard; Cardona, Albert; Tomancak, Pavel (2012). Elastic volume reconstruction from series of ultra-thin microscopy sections. Nature Methods, 9(7):717-720.

Ren, Jiangtao; Wang, Jiahai; Wang, Jin; Luedtke, Nathan W; Wang, Erkang (2012). Enantioselective and label-free detection of oligopeptide via fluorescent indicator displacement. Biosensors & Bioelectronics, 35(1):401-406.

Storari, Michelangelo; Dennert, Francesca G; Bigler, Laurent; Gessler, Cesare; Broggini, Giovanni A L (2012). Isolation of mycotoxins producing black aspergilli in herbal teas available on the Swiss market. Food Control, 26(1):157-161.

Mülleder, Michael; Capuano, Floriana; Pir, Pınar; Christen, Stefan; Sauer, Uwe; Oliver, Stephen G; Ralser, Markus (2012). A prototrophic deletion mutant collection for yeast metabolomics and systems biology. Nature Biotechnology, 30(12):1176-1178.

Hauswaldt, J Susanne; Höer, Manuela; Ogielska, Maria; Christiansen, Ditte G; Dziewulska-Szwajkowska, Daria; Czernicka, Elzbieta; Vences, Miguel (2012). A simplified molecular method for distinguishing among species and ploidy levels in European water frogs (Pelophylax). Molecular Ecology Resources, 12:797-805.

Erener, Süheda; Mirsaidi, Ali; Hesse, Mareike; Tiaden, André N; Ellingsgaard, Helga; Kostadinova, Radina; Donath, Marc Y; Richards, Peter J; Hottiger, Michael O (2012). ARTD1 deletion causes increased hepatic lipid accumulation in mice fed a high-fat diet and impairs adipocyte function and differentiation. FASEB Journal, 26(6):2631-2638.

Schuler, Beat; Vogel, Johannes; Grenacher, Beat; Jacobs, Robert A; Arras, Margarete; Gassmann, Max (2012). Acute and chronic elevation of erythropoietin in the brain improves exercise performance in mice without inducing erythropoiesis. FASEB Journal, 26(9):3884-3890.

Hänseler, P; Jung, U W; Jung, R E; Choi, K; Choi, K S; Hämmerle, C H F; Weber, Franz E (2012). Analysis of hydrolyzable polyethylene glycol hydrogels and deproteinized bone mineral as delivery systems for glycosylated and non-glycosylated bone morphogenetic protein-2. Acta Biomaterialia, 8(1):116-123.

Prasad, V R; Isler, K (2012). Assessment of phylogenetic structure in genome size - gene content correlations. Genome (Génome), 55(5):391-395.

Rasmussen, Peter; Kim, Yu-Sok; Krogh-Madsen, Rikke; Lundby, Carsten; Olsen, Niels V; Secher, Niels H; van Lieshout, Johannes J (2012). Both acute and prolonged administration of EPO reduce cerebral and systemic vascular conductance in humans. FASEB Journal, 26(3):1343-1348.

Bollwein, H; Lüttgenau, J; Herzog, K (2012). Bovine luteal blood flow: basic mechanism and clinical relevance. Reproduction, Fertility, and Development, 25(1):71-79.

Rasmussen, Peter; Nordsborg, Nikolai; Taudorf, Sarah; Sørensen, Henrik; Berg, Ronan M G; Jacobs, Robert A; Bailey, Damian M; Olsen, Niels V; Secher, Niels H; Møller, Kirsten; Lundby, Carsten (2012). Brain and skin do not contribute to the systemic rise in erythropoietin during acute hypoxia in humans. FASEB Journal, 26(5):1831-1834.

Miedaner, T; Risser, P; Paillard, S; Schnurbusch, T; Keller, B; Hartl, L; Holzapfel, J; Korzun, V; Ebmeyer, E; Utz, H F (2012). Broad-spectrum resistance loci for three quantitatively inherited diseases in two winter wheat populations. Molecular Breeding, 29(3):731-742.

Ojosnegros, S; Delgado-Eckert, E; Beerenwinkel, N (2012). Competition-colonization trade-off promotes coexistence of low-virulence viral strains. Journal of the Royal Society Interface, 9(74):2244-2254.

Medici, V; Fry, S N (2012). Embodied linearity of speed control in Drosophila melanogaster. Journal of the Royal Society Interface, 9(77):3260-3267.

Kowalewski, M P (2012). Endocrine and molecular control of luteal and placental function in dogs: a review. Reproduction in Domestic Animals, 47(s6):19-24.

Jia, Yi; Suzuki, Norio; Yamamoto, Masayuki; Gassmann, Max; Noguchi, Constance Tom (2012). Endogenous erythropoietin signaling facilitates skeletal muscle repair and recovery following pharmacologically induced damage. FASEB Journal, 26(7):2847-2858.

Juhas, Mario; Eberl, Leo; Church, George M (2012). Essential genes as antimicrobial targets and cornerstones of synthetic biology. Trends in Biotechnology, 30(11):601-607.

Müller, Marlen; Patrignani, Andrea; Rehrauer, Hubert; Gruissem, Wilhelm; Hennig, Lars (2012). Evaluation of alternative RNA labeling protocols for transcript profiling with Arabidopsis AGRONOMICS1 tiling arrays. Plant Methods, 8:18.

Simon, Manuel; Zangemeister-Wittke, Uwe; Plückthun, Andreas (2012). Facile Double-Functionalization of Designed Ankyrin Repeat Proteins using Click and Thiol Chemistries. Bioconjugate Chemistry, 23(2):279-286.

Schindelin, Johannes; Arganda-Carreras, Ignacio; Frise, Erwin; Kaynig, Verena; Longair, Mark; Pietzsch, Tobias; Preibisch, Stephan; Rueden, Curtis; Saalfeld, Stephan; Schmid, Benjamin; Tinevez, Jean-Yves; James White, Daniel; Hartenstein, Volker; Eliceiri, Kevin; Tomancak, Pavel; Cardona, Albert (2012). Fiji: an open-source platform for biological-image analysis. Nature Methods, 9(7):676-682.

van Weeghel, Michel; Te Brinke, Heleen; van Lenthe, Henk; Kulik, Wim; Minkler, Paul E; Stoll, Maria S K; Sass, Jörn Oliver; Janssen, Uwe; Stoffel, Wilhelm; Schwab, K Otfried; Wanders, Ronald J A; Hoppel, Charles L; Houten, Sander M (2012). Functional redundancy of mitochondrial enoyl-CoA isomerases in the oxidation of unsaturated fatty acids. FASEB Journal, 26(10):4316-4326.

Risk, Joanna M; Selter, Liselotte L; Krattinger, Simon G; Viccars, Libby A; Richardson, Terese M; Buesing, Gabriele; Herren, Gerhard; Lagudah, Evans S; Keller, Beat (2012). Functional variability of the Lr34 durable resistance gene in transgenic wheat. Plant Biotechnology Journal, 10(4):477-487.

Niederer, L; Kuhnert, P; Egger, T; Büttner, S; Hächler, H; Korczak, B (2012). Genotypes and antibiotic resistances of Campylobacter jejuni and Campylobacter coli from domestic and travel-associated human cases. Applied and Environmental Microbiology, 78(1):288-291.

Kottmann, Jonas; Rey, Julien M; Luginbühl, Joachim; Reichmann, Ernst; Sigrist, Markus W (2012). Glucose sensing in human epidermis using mid-infrared photoacoustic detection. Biomedical Optics Express, 3(4):667-680.

Henson, Sonal; Bishop, Richard P; Morzaria, Subhash; Spooner, Paul R; Pelle, Roger; Poveda, Lucy; Ebeling, Martin; Küng, Erich; Certa, Ulrich; Daubenberger, Claudia A; Qi, Weihong (2012). High-resolution genotyping and mapping of recombination and gene conversion in the protozoan Theileria parva using whole genome sequencing. BMC Genomics, 13:503.

Roschitzki-Voser, Heidi; Schroeder, Thilo; Lenherr, Esther D; Frölich, Franziska; Schweizer, Andreas; Donepudi, Mrudula; Ganesan, Rajkumar; Mittl, Peer R E; Baici, Antonio; Grütter, Markus G (2012). Human caspases in vitro: expression, purification and kinetic characterization. Protein Expression and Purification, 84(2):236-246.

Chhuneja, P; Kumar, K; Stirnweis, D; Hurni, S; Keller, B; Dhaliwal, H S; Singh, K (2012). Identification and mapping of two powdery mildew resistance genes in Triticum boeoticum L. Theoretical and Applied Genetics, 124(6):1051-1058.

Milleret, Vincent; Hefti, Thomas; Hall, Heike; Vogel, Viola; Eberli, Daniel (2012). Influence of fiber diameter and surface roughness of electrospun vascular grafts on blood activation. Acta Biomaterialia, 8(12):4349-4356.

Beil, J; Fairbairn, L; Pelczar, P; Buch, T (2012). Is BAC transgenesis obsolete? State of the art in the era of designer nucleases. Journal of Biomedicine and Biotechnology, 2012:308414.

Balogh, Orsolya; Kowalewski, Mariusz P; Reichler, Iris M (2012). Leptin and leptin receptor gene expression in the canine corpus luteum during diestrus, pregnancy and after aglepristone-induced luteolysis. Reproduction in Domestic Animals, 47(s6):40-42.

Kudryashev, Mikhail; Castaño-Díez, Daniel; Stahlberg, Henning (2012). Limiting factors in single particle cryo electron tomography. Computational and Structural Biotechnology Journal, 1(2):online.

Filková, Mária; Jüngel, Astrid; Gay, Renate E; Gay, Steffen (2012). MicroRNAs in rheumatoid arthritis: Potential role in diagnosis and therapy. BioDrugs, 26(3):131-141.

Haller, C M; Buerzle, W; Kivelio, A; Perrini, M; Brubaker, C E; Gubeli, R J; Mallik, A S; Weber, W; Messersmith, P B; Mazza, E; Ochsenbein-Kölble, N; Zimmermann, R; Ehrbar, M (2012). Mussel-mimetic tissue adhesive for fetal membrane repair: an ex vivo evaluation. Acta Biomaterialia, 8(12):4365-4370.

Lübbers, H T; Kruse, A; Obwegeser, J A; Grätz, K W; Eyrich, G (2012). Oblique high resolution tomography. The ideal plane for visualisation of the gonial section of the mandibular canal and its related structures? Journal of Healthcare Engineering, (1):87-104.

Jansen, David A W A M; Cant, Michael A; Manser, Marta B (2012). Segmental concatenation of individual signatures and context cues in banded mongoose (Mungos mungo) close calls. BMC Biology, 10:97.

Schulz, Kristina; Sydekum, Esther; Krueppel, Roland; Engelbrecht, Christoph J; Schlegel, Felix; Schröter, Aileen; Rudin, Markus; Helmchen, Fritjof (2012). Simultaneous BOLD fMRI and fiber-optic calcium recording in rat neocortex. Nature Methods, 9(6):597-602.

Languille, S; Blanc, S; Blin, O; Canale, C I; Dal-Pan, A; Devau, G; Dhenain, M; Dorieux, O; Epelbaum, J; Gomez, D; Hardy, I; Henry, P-Y; Irving, E A; Marchal, J; Mestre-Francés, N; Perret, M; Picq, J-L; Pifferi, F; Rahman, A; Schenker, E; Terrien, J; Théry, M; Verdier, J-M; Aujard, F (2012). The grey mouse lemur: A non-human primate model for ageing studies. Ageing Research Reviews, 11(1):150-162.

Hauser, Helmut; Ijspeert, Auke J; Füchslin, Rudolf M; Pfeifer, Rolf; Maass, Wolfgang (2012). The role of feedback in morphological computation with compliant bodies. Biological Cybernetics, 106(10):595-613.

Schaefer, J V; Pluckthun, A (2012). Transfer of engineered biophysical properties between different antibody formats and expression systems. Protein Engineering Design and Selection : PEDS, 25(10):485-506.

Brunner, S; Stirnweis, D; Quijano, C D; Buesing, G; Herren, G; Parlange, F; Barret, P; Tassy, C; Sautter, C; Winzeler, M; Keller, B (2012). Transgenic Pm3 multilines of wheat show increased powdery mildew resistance in the field. Plant Biotechnology Journal, 10(4):398-409.

Jacobs, Robert A; Siebenmann, Christoph; Hug, Mike; Toigo, Marco; Meinild, Anne-Kristine; Lundby, Carsten (2012). Twenty-eight days at 3454-m altitude diminishes respiratory capacity but enhances efficiency in human skeletal muscle mitochondria. FASEB Journal, 26(12):5192-5200.

Barile, Lucio; Gherghiceanu, Mihaela; Popescu, Laurentiu M; Moccetti, Tiziano; Vassalli, Giuseppe (2012). Ultrastructural evidence of exosome secretion by progenitor cells in adult mouse myocardium and adult human cardiospheres. Journal of Biomedicine and Biotechnology, 2012:354605.


Rossetti, V; Filippini, M; Svercel, M; Barbour, A D; Bagheri, Homayoun C (2011). Emergent multicellular life cycles in filamentous bacteria owing to density-dependent population dynamics. Journal of the Royal Society Interface, 8(65):1772-1784.

Cohen, B; Dai, M; Ogorodnikov, D; Laurens, J; Raphan, T; Müller, P; Athanasios, A; Edmaier, J; Grossenbacher, T; Stadtmüller, K; Brugger, U; Hauser, G; Straumann, D (2011). Motion sickness on tilting trains. FASEB Journal, 25(11):3765-3774.

Rasmussen, P; Wyss, M T; Lundby, C (2011). Cerebral glucose and lactate consumption during cerebral activation by physical activity in humans. FASEB Journal, 25(9):2865-2873.

Wandeler, P; Camenisch, G (2011). Identifying Y-chromosomal diversity by long-template PCR. Molecular Ecology Resources, 11(5):835-841.

Mago, R; Tabe, L; McIntosh, R A; Pretorius, Z; Kota, R; Paux, E; Wicker, T; Breen, J; Lagudah, E S; Ellis, J G; Spielmeyer, W (2011). A multiple resistance locus on chromosome arm 3BS in wheat confers resistance to stem rust (Sr2), leaf rust (Lr27) and powdery mildew. Theoretical and Applied Genetics, 123(4):615-623.

Dobay, Maria Pamela; Dobay, Akos; Bantang, Johnrob; Mendoza, Eduardo (2011). How many trimers? Modeling influenza virus fusion yields a minimum aggregate size of six trimers, three of which are fusogenic. Molecular Biosystems, 7(10):2741-2749.

Raman, K; Wagner, A (2011). Evolvability and robustness in a complex signalling circuit. Molecular BioSystems, 7(4):1081-1092.

Kaestle, C; Winkeler, A; Richter, R; Sauer, H; Hescheler, J; Fraefel, C; Wartenberg, M; Jacobs, A H (2011). Imaging herpes simplex virus type 1 amplicon vector-mediated gene expression in human glioma spheroids. Molecular Imaging, 10(3):197-205.

Raman, K; Wagner, A (2011). The evolvability of programmable hardware. Journal of the Royal Society Interface, 8:269-281.

Zelenka, K; Borsig, L; Alberto, R (2011). Metal complex mediated conjugation of peptides to nucleus targeting acridine orange: a modular concept for dual-modality imaging agents. Bioconjugate Chemistry, 22(5):958-967.

Chauhan, Harsh; Khurana, Paramjit (2011). Use of doubled haploid technology for development of stable drought tolerant bread wheat (Triticum aestivum L.) transgenics. Plant Biotechnology Journal, 9(3):408-417.

Chijioke, Obinna; Münz, Christian (2011). Interactions of human myeloid cells with natural killer cell subsets in vitro and in vivo. Journal of Biomedicine and Biotechnology, 2011:251679.

Maerkl, Sebastian J (2011). Next generation microfluidic platforms for high-throughput protein biochemistry. Current Opinion in Biotechnology, 22(1):59-65.

Sela, H; Loutre, C; Keller, B; Nevo, E; Korol, A; Fahima, T (2011). Rapid linkage disequilibrium decay in the Lr10 gene in wild emmer wheat (Triticum dicoccoides) populations. Theoretical and Applied Genetics, 122(1):175-187.

Wu, F; Christen, P; Gehring, H (2011). A novel approach to inhibit intracellular vitamin B6-dependent enzymes: proof of principle with human and plasmodium ornithine decarboxylase and human histidine decarboxylase. FASEB Journal, 25(7):2109-2122.

Huelsmann, P M; Hofmann, A D; Knoepfel, S A; Popp, J; Rauch, P; Di Giallonardo, F; Danke, C; Gueckel, E; Schambach, A; Wolff, H; Metzner, K J; Berens, C (2011). A suicide gene approach using the human pro-apoptotic protein tBid inhibits HIV-1 replication. BMC Biotechnology, 11:4.

Loretz, M; Stephan, Roger; Zweifel, C (2011). Antibacterial activity of decontamination treatments for cattle hides and beef carcasses. Food Control, 22(3-4):347-359.

Loretz, M; Stephan, Roger; Zweifel, C (2011). Antibacterial activity of decontamination treatments for pig carcasses. Food Control, 22(8):1121-1125.

Hauser, Helmut; Neumann, Gerhard; Ijspeert, Auke J; Maass, Wolfgang (2011). Biologically inspired kinematic synergies enable linear balance control of a humanoid robot. Biological Cybernetics, 104(4-5):235-249.

Blanc, F; Vissers, Y M; Adel-Patient, Karine; Rigby, N M; Mackie, A R; Gunning, A P; Wellner, N K; Skov, P S; Przybylski-Nicaise, L; Ballmer-Weber, B; Zuidmeer-Jongejan, L; Szépfalusi, Z; Ruinemans-Koerts, J; Jansen, A P H; Bernard, H; Wal, J M; Savelkoul, H F J; Wichers, H J; Mills, E N C (2011). Boiling peanut Ara h 1 results in the formation of aggregates with reduced allergenicity. Molecular Nutrition & Food Research, 55(12):1887-1894.

Weisskopf, L; Heller, S; Eberl, L (2011). Burkholderia species are major inhabitants of white lupin cluster roots. Applied and Environmental Microbiology, 77(21):7715-7720.

Calviño, M; Bruggmann, R; Messing, J (2011). Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems. BMC Genomics, 12:356.

Kittl, S; Kuhnert, P; Hächler, H; Korczak, B M (2011). Comparison of genotypes and antibiotic resistance of Campylobacter jejuni isolated from humans and slaughtered chickens in Switzerland. Journal of Applied Microbiology, 110(2):513-520.

Jiangtao, R; Wang, J; Wang, J; Luedtke, N W; Wang, E (2011). Contribution of potassium ion and split modes of G-quadruplex to the sensitivity and selectivity of label-free sensor toward DNA detection using fluorescence. Biosensors and Bioelectronics, 31(1):316-322.

Stölting, Kai N; Clarke, Andrew C; Meudt, Heidi M; Blanckenhorn, Wolf U; Wilson, Anthony B (2011). Cost-effective fluorescent amplified fragment length polymorphism (AFLP) analyses using a three primer system. Molecular Ecology Resources, 11(3):494-502.

Boersma, Y L; Plückthun, A (2011). DARPins and other repeat protein scaffolds: advances in engineering and applications. Current Opinion in Biotechnology, 22(6):849-857.

Hermes, Jens P; Sander, Fabian; Peterle, Torsten; Cioffi, Carla; Ringler, Philippe; Pfohl, Thomas; Mayor, Marcel (2011). Direct control of the spatial arrangement of gold nanoparticles in organic-inorganic hybrid superstructures. Small, 7(7):920-9.

Walter, Jasmin; Klein, Claudia; Wehrend, Axel (2011). Distribution of mast cells in vaginal, cervical and uterine tissue of non-pregnant mares: Investigations on correlations with ovarian steroids. Reproduction in Domestic Animals, 27:201-205.

Aslan, Selim; Arslanbas, D; Beindorff, N; Bollwein, Heiner (2011). Effects of induction of ovulation with GnRH or hCG on follicular and luteal blood flow in Holstein-Friesian heifers. Reproduction in Domestic Animals, 46(5):781-786.

Schönenberger, C; Schütz, A; Franco-Obregón, A; Zenobi-Wong, M (2011). Efficient electroporation of peptides into adherent cells: investigation of the role of mechano-growth factor in chondrocyte culture. Biotechnology Letters, 33(5):883-888.

Morimoto, N; Ponce de León, M S; Zollikofer, C P E (2011). Exploring femoral diaphyseal shape variation in wild and captive chimpanzees by means of morphometric mapping: A test of Wolff's law. Anatomical Record, 294(4):589-609.

Grewe, B F; Voigt, F F; van 't Hoff, M; Helmchen, F (2011). Fast two-layer two-photon imaging of neuronal cell populations using an electrically tunable lens. Biomedical Optics Express, 2(7):2035-2046.

Morimoto, N; Ponce de León, M S; Nishimura, T; Zollikofer, C P E (2011). Femoral morphology and femoropelvic musculoskeletal anatomy of humans and great apes: a comparative virtopsy study. Anatomical Record, 294(9):1433-1445.

Buetler, T M; Latado, H; Leclerc, E; Weigle, B; Baumeyer, A; Heizmann, C W; Scholz, G (2011). Glycolaldehyde-modified β-lactoglobulin AGEs are unable to stimulate inflammatory signaling pathways in RAGE-expressing human cell lines. Molecular Nutrition & Food Research, 55(2):291-299.

Frey, Beat; Niklaus, Pascal A; Kremer, Johann; Lüscher, Peter; Zimmermann, Stephan (2011). Heavy-machinery traffic impacts methane emissions as well as methanogen abundance and community structure in oxic forest soils. Applied and Environmental Microbiology, 77(17):6060-6068.

Eichenberger, R M; Stephan, Roger; Deplazes, P (2011). Increased sensitivity for the diagnosis of Taenia saginata cysticercus infection by additional heart examination compared to the EU-approved routine meat inspection. Food Control, 22(6):989-992.

Sannomiya, T; Scholder, O; Jefimovs, K; Hafner, C; Dahlin, A B (2011). Investigation of Plasmon Resonances in Metal Films with Nanohole Arrays for Biosensing Applications. Small, 7(12):1653-1663.

Becskei, A; Scherrer, S; Kelemen, J Z; Murray, A E (2011). Modeling of chromosomal epigenetic silencing processes. Transcription, 2(4):173-178.

Michel, E; Spörri, M; Ohlerth, Stefanie; Reichler, Iris M (2011). Prediction of parturition date in the bitch and queen. Reproduction in Domestic Animals, 46(5):926-932.

Sancho, A I; Wangorsch, A; Jensen, B M; Watson, A; Alexeev, Y; Johnson, P E; Mackie, A R; Neubauer, A; Reese, G; Ballmer-Weber, B; Hoffmann-Sommergruber, K; Skov, P S; Vieths, S; Mills, E N C (2011). Responsiveness of the major birch allergen Bet v 1 scaffold to the gastric environment: Impact on structure and allergenic activity. Molecular Nutrition and Food Research, 55(11):1690-1699.

Toppino, L; Kooiker, M; Lindner, M; Dreni, L; Rotino, G L; Kater, M M (2011). Reversible male sterility in eggplant (Solanum melongena L.) by artificial microRNA-mediated silencing of general transcription factor genes. Plant Biotechnology Journal, 9(6):684-692.

Singh, B R; Gupta, S K; Azaizeh, H; Shilev, S; Sudre, D; Song, W Y; Martinoia, E; Mench, M (2011). Safety of food crops on land contaminated with trace elements. Journal of the Science of Food and Agriculture, 91(8):1349-1366.

Häring, T; Wichert, Brigitta; Dolf, G; Haase, B (2011). Segregation analysis of overweight body condition in an experimental cat population. Journal of Heredity, 102:28-31.

Sannomiya, T; Vörös, J (2011). Single plasmonic nanoparticles for biosensing. Trends in Biotechnology, 29(7):343-351.

Geisberger, G; Paulus, S; Besic Gyenge, E; Maake, C; Patzke, Greta R (2011). Targeted delivery of polyoxometalate nanocomposites. Small, 7(19):2808-2814.

Zuellig, R A; Bornhauser, B C; Amstutz, R; Constantin, B; Schaub, M C (2011). Tissue expression and actin binding of a novel N-terminal utrophin isoform. Journal of Biomedicine and Biotechnology, 2011:904547.

Hauser, Helmut; Ijspeert, Auke J; Füchslin, Rudolf M; Pfeifer, Rolf; Maass, Wolfgang (2011). Towards a theoretical foundation for morphological computation with compliant bodies. Biological Cybernetics, 105(5-6):355-370.

Brunner, S; Hurni, S; Herren, G; Kalinina, O; von Burg, S; Zeller, S L; Schmid, B; Winzeler, M; Keller, B (2011). Transgenic Pm3b wheat lines show resistance to powdery mildew in the field. Plant Biotechnology Journal, 9(8):897-910.

Blom, D; Fabbri, C; Eberl, L; Weisskopf, L (2011). Volatile-mediated killing of Arabidopsis thaliana by Bacteria is mainly due to hydrogen cyanide. Applied and Environmental Microbiology, 77(3):1000-1008.

Layer, L E; Ullrich, O (2011). Zellen des Immunsystems: vom Polarkreis ins All. BIOspektrum, 17(4):437-439.

Reiter, L; Rinner, O; Picotti, P; Hüttenhain, R; Beck, M; Brusniak, M Y; Hengartner, M O; Aebersold, R (2011). mProphet: automated data processing and statistical validation for large-scale SRM experiments. Nature Methods, 8(5):430-435.


Graetzel, C F; Nelson, B J; Fry, S N (2010). Frequency response of lift control in Drosophila. Journal of the Royal Society Interface, 7(52):1603-1616.

Chaloupka, K; Malam, Y; Seifalian, A M (2010). Nanosilver as a new generation of nanoproduct in biomedical applications. Trends in Biotechnology, 28(11):580-588.

Zörner, B; Filli, L; Starkey, M L; Gonzenbach, Roman; Kasper, H; Röthlisberger, M; Bolliger, M; Schwab, M E (2010). Profiling locomotor recovery: comprehensive quantification of impairments after CNS damage in rodents. Nature Methods, 7(9):701-708.

Eppler, E; Berishvili, G; Mazel, P; Caelers, A; Hwang, G; Maclean, N; Reinecke, M (2010). Distinct organ-specific up- and down-regulation of IGF-I and IGF-II mRNA in various organs of a GH-overexpressing transgenic Nile tilapia. Transgenic Research, 19(2):231-240.

Stark, M; Berger, S A; Stamatakis, A; von Mering, C (2010). MLTreeMap - accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies. BMC Genomics, 11:461.

Kozak, K; Bauch, A; Pylak, T; Rinn, B (2010). Towards a comprehensive open source platform for management and analysis of High Content Screening data. European Pharmaceutical Review, 4:34-38.

Rinaldi, Fabio; Schneider, Gerold; Kaljurand, Kaarel; Clematide, Simon; Vachon, Thérèse; Romacker, Martin (2010). OntoGene in BioCreative II.5. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 7(3):472-480.

Riener, R; Lünenburger, L; Maier, I C; Colombo, G; Dietz, V (2010). Locomotor training in subjects with sensori-motor deficits: An overview of the robotic gait orthosis lokomat. Journal of Healthcare Engineering, 1(2):197-216.

Blenn, C; Wyrsch, P; Althaus, F R (2010). Messung von zytosolischem Ca2+ als Indikator toxischer Zellschädigung. BIOspektrum, 16:438-440.

Greminger, M P; Krützen, M; Schelling, C; Pienkowska-Schelling, A; Wandeler, P (2010). The quest for Y-chromosomal markers – methodological strategies for mammalian non-model organisms. Molecular Ecology Resources, 10(3):409-420.

Huppert, J; Closhen, D; Croxford, A; White, R; Kulig, P; Pietrowski, E; Bechmann, I; Becher, B; Luhmann, H J; Waisman, A; Kuhlmann, C R W (2010). Cellular mechanisms of IL-17-induced blood-brain barrier disruption. FASEB Journal, 24(4):1023-1034.

Briefer, E; Vannoni, E; McElligott, A G (2010). Quality prevails over identity in the sexually selected vocalisations of an ageing mammal. BMC Biology, 8:35.

Zeder, M; Van den Wyngaert, S; Köster, O; Felder, K M; Pernthaler, J (2010). Automated quantification and sizing of unbranched filamentous cyanobacteria by model based object oriented image analysis. Applied and Environmental Microbiology, 76(5):1615-1622.

Bertelsmann, H; Keppler, S; Höltershinken, M; Bollwein, Heiner; Behne, D; Alber, D; Bukalis, G; Kyriakopoulos, A; Sieme, H (2010). Selenium in blood, semen, seminal plasma and spermatozoa of stallions and its relationship to sperm quality. Reproduction, Fertility and Development, 22(5):886-891.

Mathes, S H; Wohlwend, L; Uebersax, L; von Mentlen, R; Thoma, D S; Jung, R E; Görlach, C; Graf-Hausner, U (2010). A bioreactor test system to mimic the biological and mechanical environment of oral soft tissues and to evaluate substitutes for connective tissue grafts. Biotechnology and Bioengineering, 107(6):1029-1039.

Kelm, J M; Lorber, V; Snedeker, J G; Schmidt, D; Broggini-Tenzer, A; Weisstanner, M; Odermatt, B; Mol, A; Zünd, G; Hoerstrup, S P (2010). A novel concept for scaffold-free vessel tissue engineering: self-assembly of microtissue building blocks. Journal of Biotechnology, 148(1):46-55.

Jovanovic, M; Reiter, L; Picotti, P; Lange, V; Bogan, E; Hurschler, B A; Blenkiron, C; Lehrbach, N J; Ding, X C; Weiss, M; Schrimpf, S P; Miska, E A; Grosshans, H; Aebersold, R; Hengartner, M O (2010). A quantitative targeted proteomics approach to validate predicted microRNA targets in C. elegans. Nature Methods, 7(10):837-842.

Rothgiesser, K M; Fey, M; Hottiger, M O (2010). Acetylation of p65 at lysine 314 is important for late NF-kappaB-dependent gene expression. BMC Genomics, 11:22.

Loretz, M; Stephan, Roger; Zweifel, C (2010). Antimicrobial activity of decontamination treatments for poultry carcasses: a literature survey. Food Control, 21(6):791-804.

Herrmann, I K; Urner, M; Koehler, F M; Hasler, M; Roth-Z'graggen, B; Grass, R N; Ziegler, U; Beck-Schimmer, B; Stark, W J (2010). Blood purification using functionalized core/shell nanomagnets. Small, 6(13):1388-1392.

Pasquer, F; Pelludat, C; Duffy, B; Frey, J E (2010). Broad spectrum microarray for fingerprint-based bacterial species identification. BMC Biotechnology, 10:13.

Held, M; Schmitz, M H A; Fischer, B; Walter, T; Neumann, B; Olma, M H; Peter, M; Ellenberg, J; Gerlich, D W (2010). CellCognition: time-resolved phenotype annotation in high-throughput live cell imaging. Nature Methods, 7(9):747-754.

Gupta, S; Soellinger, M; Grzybowski, D M; Boesiger, P; Biddiscombe, J; Poulikakos, D; Kurtcuoglu, V (2010). Cerebrospinal fluid dynamics in the human cranial subarachnoid space: an overlooked mediator of cerebral disease. I. Computational model. Journal of the Royal Society Interface, 7(49):1195-1204.

Struthers, H; Viertl, D; Kosinski, M; Spingler, B; Buchegger, F; Schibli, R (2010). Charge dependent substrate activity of C3' and N3 functionalized, organometallic Technetium and Rhenium-labeled thymidine derivatives toward human thymidine kinase 1. Bioconjugate Chemistry, 21(4):622-634.

Zahnd, C; Sarkar, C A; Plückthun, A (2010). Computational analysis of off-rate selection experiments to optimize affinity maturation by directed evolution. Protein Engineering Design and Selection : PEDS, 23(4):175-184.

Lumjiaktase, P; Aguilar, C; Battin, T; Riedel, K; Eberl, L (2010). Construction of self-transmissible green fluorescent protein-based biosensor plasmids and their use for identification of n-acyl homoserine-producing bacteria in lake sediments. Applied and Environmental Microbiology, 76(18):6119-6127.

Setz, C; Arnrich, B; Schumm, J; La Marca, Roberto; Tröster, G; Ehlert, Ulrike (2010). Discriminating stress from cognitive load using a wearable EDA device. IEEE transactions on information technology in biomedicine, 14(2):410-417.

Gabi, Michael; Larmagnac, Alexandre; Schulte, Petra; Vörös, János (2010). Electrically controlling cell adhesion, growth and migration. Colloids and Surfaces. B, Biointerfaces, 79(2):365-371.

Hartmann, I; Carranza, P; Stephan, Roger; Lehner, Angelika; Eberl, L; Riedel, K (2010). Genes involved in Cronobacter sakazakii biofilm formation. Applied and Environmental Microbiology, 76(7):2251-2261.

Greber, T (2010). Graphene and Hexagonal Boron Nitride Layers: Nanostructures with 3 bond hierarchy levels. e-Journal of Surface Science and Nanotechnology, 8:62-64.

Babik, W; Stuglik, M; Qi, W; Kuenzli, M; Kuduk, K; Koteja, P; Radwan, J (2010). Heart transcriptome of the bank vole (Myodes glareolus): towards understanding the evolutionary variation in metabolic rate. BMC Genomics, 11:390.

Grewe, B F; Langer, D; Kasper, H; Kampa, B M; Helmchen, F (2010). High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision. Nature Methods, 7(5):399-405.

Zhou, Y; Grunwaldt, J D; Krumeich, F; Zheng, K; Chen, G; Stoetzel, J; Frahm, R; Patzke, Greta R (2010). Hydrothermal synthesis of Bi6S2O15 nanowires: structural, in situ EXAFS, and humidity-sensing studies. Small, 6(11):1173-1179.

Brient-Litzler, E; Plückthun, A; Bedouelle, H (2010). Knowledge-based design of reagentless fluorescent biosensors from a designed ankyrin repeat protein. Protein Engineering Design and Selection : PEDS, 23(4):229-241.

Bally, M; Bailey, K; Sugihara, K; Grieshaber, D; Vörös, J; Städler, B (2010). Liposome and lipid bilayer arrays towards biosensing applications. Small, 6(22):2481-2497.

Webster, D; Wasserman, E; Ehrbar, M; Weber, Franz E; Bab, I; Müller, R (2010). Mechanical loading of mouse caudal vertebrae increases trabecular and cortical bone mass-dependence on dose and genotype. Biomechanics and Modeling in Mechanobiology, 9(6):737-747.

Wadle, A; Mischo, A; Strahl, S; Nishikawa, H; Held, G; Neumann, F; Wullner, B; Fischer, E; Kleber, S; Karbach, J; Jager, E; Shiku, H; Odunsi, K; Shrikant, P A; Knuth, A; Cerundolo, V; Renner, C (2010). NY-ESO-1 protein glycosylated by yeast induces enhanced immune responses. FEMS Yeast Research, 27(11):919-931.

Blatter, S; Giezendanner, N; Stephan, Roger; Zweifel, C (2010). Phenotypic and molecular typing of Listeria monocytogenes isolated from the processing environment and products of a sandwich-producing plant. Food Control, 21(11):1519-1523.

Schluck, T; Aegerter, C M (2010). Photo-elastic properties of the wing imaginal disc of Drosophila. European Physical Journal E - Soft Matter and Biological Physics, 33(2):111-115.

Blom, J F; Zimmermann, Y S; Ammann, T; Pernthaler, J (2010). Scent of danger: floc formation by a freshwater bacterium is induced by supernatants from a predator-prey coculture. Applied and Environmental Microbiology, 76(18):6156-6163.

Meier, I D; Bernreuther, C; Tilling, T; Neidhardt, J; Wong, Y W; Schulze, C; Streichert, T; Schachner, M (2010). Short DNA sequences inserted for gene targeting can accidentally interfere with off-target gene expression. FASEB Journal, 24(6):1714-1724.

Deng, Y; Wu, J; Eberl, L; Zhang, L H (2010). Structural and functional characterization of diffusible signal factor family quorum-sensing signals produced by members of the Burkholderia cepacia complex. Applied and Environmental Microbiology, 76(14):4675-4683.

Perriman, A W; Williams, D S; Jackson, A J; Grillo, I; Koomullil, J M; Ghasparian, A; Robinson, J A; Mann, S (2010). Synthetic virus-like particles and hybrid constructs based on lipopeptide self-assembly. Small, 6(11):1191-1196.

Kyprianou, D; Guerreiro, A R; Nirschl, M; Chianella, I; Subrahmanyam, S; Turner, A P F; Piletsky, S (2010). The application of polythiol molecules for protein immobilisation on sensor surfaces. Biosensors & Bioelectronics, 25(5):1049-1055.

Bussière, L F; Demont, M; Pemberton, A J; Hall, M D; Ward, Paul I (2010). The assessment of insemination success in yellow dung flies using competitive PCR. Molecular Ecology Resources, 10(2):292-303.

Frey, Beat; Rieder, S R; Brunner, I; Plötze, M; Koetzsch, S; Lapanje, A; Brandl, H; Furrer, G (2010). Weathering-associated bacteria from the Damma glacier forefield: Physiological capabilities and impact on granite dissolution. Applied and Environmental Microbiology, 76(14):4788-4796.

Arnrich, B; Setz, C; La Marca, Roberto; Tröster, G; Ehlert, Ulrike (2010). What does your chair know about your stress level? IEEE transactions on information technology in biomedicine, 14(2):207-214.

Johler, Sophia; Stephan, Roger; Hartmann, I; Kuehner, K A; Lehner, Angelika (2010). Yellow pigmentation in Cronobacter sakazakii ES5: Genes involved and influence on persistence and growth under environmental stress. Applied and Environmental Microbiology, 76(4):1053-1061.


Deplazes, Anna; Huppenbauer, Markus (2009). Synthetic organisms and living machines - Positioning the products of synthetic biology at the borderline between living and non-living matter. Systems and Synthetic Biology, 3(1-4):55-63.

Greminger, Maja P; Schäfer, Martin A; Nater, Alexander; Blanckenhorn, Wolf U; Krützen, Michael (2009). Development of polymorphic microsatellite markers for the dung fly (Sepsis cynipsea). Molecular Ecology Resources, 9(6):1554-1556.

Schmidt, M; Ganguli-Mitra, A; Torgersen, H; Kelle, A; Deplazes, Anna; Biller-Andorno, N (2009). A priority paper for the societal and ethical aspects of synthetic biology. Systems and Synthetic Biology, 3(1-4):3-7.

Gargis, S R; Gargis, A S; Heath, H E; Heath, L S; LeBlanc, P A; Senn, M M; Berger-Bächi, B; Simmonds, R S; Sloan, G L (2009). Zif, the zoocin A immunity factor, is a FemABX-like immunity protein with a novel mode of action. Applied and Environmental Microbiology, 75(19):6205-6210.

Füchslin, R M; Maeke, T; McCaskill, J S (2009). Spatially resolved simulations of membrane reactions and dynamics: Multipolar reaction DPD. European Physical Journal E - Soft Matter and Biological Physics, 29(4):431-448.

Welle, M; Philipp, U; Rufenacht, S; Roosje, P; Scharfenstein, M; Schutz, E; Brenig, B; Linek, M; Mecklenburg, L; Grest, Paula; Drögemüller, M; Haase, B; Leeb, T; Drögemüller, Cord (2009). MLPH genotype—melanin phenotype correlation in dilute dogs. Journal of Heredity, 100(Supplement):S75-S79.

Steindler, L; Bertani, I; De Sordi, L; Schwager, S; Eberl, L; Venturi, V (2009). LasI/R and RhlI/R quorum sensing in a strain of Pseudomonas aeruginosa beneficial to plants. Applied and Environmental Microbiology, 75(15):5131-5140.

Nef, T; Guidali, M; Riener, R (2009). ARMin III - Arm therapy exoskeleton with ergonomic shoulder actuation. Applied Bionics and Biomechanics, 6(2):127-142.

Schneider, O D; Weber, Franz; Brunner, T J; Loher, S; Ehrbar, M; Schmidlin, P R; Stark, W J (2009). In vivo and in vitro evaluation of flexible, cottonwool-like nanocomposites as bone substitute material for complex defects. Acta Biomaterialia, 5(5):1775-1784.

Wolf, S A; Steiner, B; Wengner, A; Lipp, M; Kammertoens, T; Kempermann, G (2009). Adaptive peripheral immune response increases proliferation of neural precursor cells in the adult hippocampus. FASEB Journal, 23(9):3121-3128.

Boretti, Felicitas S; Perreten, A; Meli, Marina L; Cattori, V; Willi, Barbara; Wengi, N; Hornok, S; Honegger, H; Hegglin, D; Woelfel, R; Reusch, Claudia E; Lutz, H; Hofmann-Lehmann, R (2009). Molecular investigations of Rickettsia helvetica infection in dogs, foxes, humans and Ixodes ticks. Applied and Environmental Microbiology, 75(10):3230-3237.

Gamper, M; Viereck, V; Geissbühler, V; Eberhard, J; Binder, J; Moll, C; Rehrauer, H; Moser, R (2009). Gene expression profile of bladder tissue of patients with ulcerative interstitial cystitis. BMC Genomics, 10:199.

Ganguli-Mitra, A; Schmidt, M; Torgersen, H; Deplazes, Anna; Biller-Andorno, N (2009). Of Newtons and heretics. Nature Biotechnology, 27(4):321-322.

Schmid, B; Klumpp, J; Raimann, E; Loessner, M J; Stephan, Roger; Tasara, T (2009). Role of cold shock proteins in growth of Listeria monocytogenes under cold and osmotic stress conditions. Applied and Environmental Microbiology, 75(6):1621-1627.

Kawe, M; Horn, U; Plückthun, A (2009). Facile promoter deletion in Escherichia coli in response to leaky expression of very robust and benign proteins from common expression vectors. Microbial Cell Factories, 8:8.

Bally, M; Dhumpa, R; Vörös, V (2009). Particle flow assays for fluorescent protein microarray applications. Biosensors and Bioelectronics, 24(5):1195-1200.

Mindt, T L; Müller, C; Stuker, F; Salazar, J F; Hohn, A; Mueggler, T; Rudin, M; Schibli, R (2009). A "Click Chemistry" approach to the efficient synthesis of multiple imaging probes derived from a single precursor. Bioconjugate Chemistry, 20(10):1940-1949.

Binkert, A; Studer, P; Vörös, J (2009). A microwell array platform for picoliter membrane protein assays. Small, 5(9):1070-1077.

Gautier, M; Flori, L; Riebler, A; Jaffrezic, F; Laloe, D; Gut, I; Moazami-Goudarzi, K; Foulley, J L (2009). A whole genome Bayesian scan for adaptive genetic divergence in West African cattle. BMC Genomics, 10(1):550.

Li, X; Glaser, D; Li, W; Johnson, W E; O'Brien, S J; Beauchamp, G K; Brand, J G (2009). Analyses of sweet receptor gene (Tas1r2) and preference for sweet stimuli in species of carnivora. Journal of Heredity, 100(Suppl 1):S90-S100.

Sannomiya, T; Sahoo, P K; Mahcicek, D I; Solak, H H; Hafner, C; Grieshaber, D; Vörös, J (2009). Biosensing by densely packed and optically coupled plasmonic particle arrays. Small, 5(16):1889-1896.

Qi, W; Nong, G; Preston, J F; Ben-Ami, F; Ebert, D (2009). Comparative metagenomics of Daphnia symbionts. BMC Genomics, 10:172.

Stölting, Kai N; Gort, Gerrit; Wüst, Christian; Wilson, Anthony B (2009). Eukaryotic transcriptomics in silico: Optimizing cDNA-AFLP efficiency. BMC Genomics, 10:565.

Sterthaus, O; Skoczylas, E; De Geyter, C; Bürki, K; Ledermann, B (2009). Evaluation of in vitro cultured rat oocytes, from different strains, by spindle morphology and maturation-promoting-factor activity combined with nuclear-transfer experiments. Cloning and Stem Cells, 11(3):463-472.

Mutembei, H M; Kowalewski, M P; Ugele, B; Schuler, G; Hoffmann, B (2009). Expression and activity of steroid sulphatase in the boar testis. Reproduction in Domestic Animals=Zuchthygiene, 44(1):17-23.

Hanemann, A; Schweizer, G F; Cossu, R; Wicker, T; Röder, M S (2009). Fine mapping, physical mapping and development of diagnostic markers for the Rrs2 scald resistance gene in barley. Theoretical and Applied Genetics, 119(8):1507-1522.

Lagudah, E S; Krattinger, S G; Herrera-Foessel, S; Singh, R P; Huerta-Espino, J; Spielmeyer, W; Brown-Guedira, G; Selter, L L; Keller, B (2009). Gene-specific markers for the wheat gene Lr34/Yr18/Pm38 which confers resistance to multiple fungal pathogens. Theoretical and Applied Genetics, 119(5):889-898.

Abu-Ali, G S; Lacher, D W; Wick, L M; Qi, W; Whittam, T S (2009). Genomic diversity of pathogenic Escherichia coli of the EHEC 2 clonal complex. BMC Genomics, 10:296.

Reichler, I M (2009). Gonadectomy in cats and dogs: a review of risks and benefits. Reproduction in Domestic Animals=Zuchthygiene, 44(Suppl.):29-35.

Antonelli, A (2009). Have giant lobelias evolved several times independently? Life form shifts and historical biogeography of the cosmopolitan and highly diverse subfamily Lobelioideae (Campanulaceae). BMC Biology, 7:82.

Isert, N; Maass, C C; Aegerter, C M (2009). Influence of gravity on a granular Maxwell’s demon experiment. European Physical Journal E - Soft Matter and Biological Physics, 28(2):205-210.

Kowalewski, M P; Dyson, M T; Manna, P R; Stocco, D M (2009). Involvement of peroxisome proliferator-activated receptor gamma in gonadal steroidogenesis and steroidogenic acute regulatory protein expression. Reproduction, Fertility, and Development, 21(7):909-922.

Tiwari, V K; Rawat, N; Chhuneja, P; Neelam, K; Aggarwal, R; Randhawa, G S; Dhaliwal, H S; Keller, B; Singh, K (2009). Mapping of quantitative trait Loci for grain iron and zinc concentration in diploid A genome wheat. Journal of Heredity, 100(6):771-776.

Hoeck, P E A; Bucher, T B; Wandeler, P; Keller, L F (2009). Microsatellite primers for the four Galápagos mockingbird species (Mimus parvulus, Mimus macdonaldi, Mimus melanotis and Mimus trifasciatus). Molecular Ecology Resources, 9(6):1538-1541.

Nater, A; Kopps, A M; Krützen, M (2009). New polymorphic tetranucleotide microsatellites improve scoring accuracy in the bottlenose dolphin Tursiops aduncus. Molecular Ecology Resources, 9(2):531-534.

Hayer, S; Pundt, N; Peters, M A; Wunrau, C; Kühnel, I; Neugebauer, K; Strietholt, S; Zwerina, J; Korb, A; Penninger, J; Joosten, L A; Gay, S; Rückle, T; Schett, G; Pap, T (2009). PI3K{gamma} regulates cartilage damage in chronic inflammatory arthritis. FASEB Journal, 23(12):4288-4298.

Benedix, A; Becker, C M; de Groot, B L; Caflisch, A; Böckmann, R A (2009). Predicting free energy changes using structural ensembles. Nature Methods, 6(1):3-4.

Milovnik, P; Ferrari, D; Sarkar, C A; Plückthun, A (2009). Selection and characterization of DARPins specific for the neurotensin receptor 1. Protein Engineering Design and Selection : PEDS, 22(6):357-366.

Kügler, M; Stein, C; Schwenkert, M; Saul, D; Vockentanz, L; Huber, T; Wetzel, S K; Scholz, O; Plückthun, A; Honegger, A; Fey, G H (2009). Stabilization and humanization of a single-chain Fv antibody fragment specific for human lymphocyte antigen CD19 by designed point mutations and CDR-grafting onto a human framework. Protein Engineering Design and Selection : PEDS, 22(3):135-147.

Wu, F; Gehring, H (2009). Structural requirements for novel coenzyme-substrate derivatives to inhibit intracellular ornithine decarboxylase and cell proliferation. FASEB Journal, 23(2):565-574.

Messner, S; Schuermann, D; Altmeyer, M; Kassner, I; Schmidt, D; Schär, P; Müller, S; Hottiger, M O (2009). Sumoylation of poly(ADP-ribose) polymerase 1 inhibits its acetylation and restrains transcriptional coactivator function. FASEB Journal, 23(11):3978-3989.

Zollikofer, C P E; Ponce de León, M S; Chaimanee, Y; Lebrun, R; Tafforeau, P; Khansubhaand, S; Jäger, J J (2009). The face of Siamopithecus: New geometric-morphometric evidence for its anthropoid status. Anatomical Record, 292(11):1734-1744.

Honegger, A; Malebranche, A D; Röthlisberger, D; Plückthun, A (2009). The influence of the framework core residues on the biophysical properties of immunoglobulin heavy chain variable domains. Protein Engineering Design and Selection : PEDS, 22(3):121-134.

Zhou, Y; Pienack, N; Bensch, W; Patzke, Greta R (2009). The interplay of crystallization kinetics and morphology in nanostructured W/Mo oxide formation: an in situ diffraction study. Small, 5(17):1978-1983.

Wagner, A (2009). Transposable elements as genomic diseases. Molecular BioSystems, 5(1):32-35.

Arnold, S; Hubler, M; Reichler, Iris M (2009). Urinary incontinence in spayed bitches: new insights into the pathophysiology and options for medical treatment. Reproduction in Domestic Animals=Zuchthygiene, 44(Suppl):190-192.

Gruber, P; Henneberg, M; Böni, Thomas; Rühli, Frank J (2009). Variability of human foramen magnum size. Anatomical Record, 292(11):1713-1719.


Hübscher, J; Lüthy, L; Berger-Bächi, B; Stutzmann Meier, P (2008). Phylogenetic distribution and membrane topology of the LytR-CpsA-Psr protein family. BMC Genomics, 9:617.

Jolivet, Renaud; Roth, Arnd; Schürmann, Felix; Gerstner, Wulfram; Senn, Walter (2008). Special issue on quantitative neuron modeling. Biological Cybernetics, 99(4-5):237-239.

Jolivet, Renaud; Schürmann, Felix; Berger, Thomas K; Naud, Richard; Gerstner, Wulfram; Roth, Arnd (2008). The quantitative single-neuron modeling competition. Biological Cybernetics, 99(4-5):417-426.

Oberhuber, C; Bulley, S M; Ballmer-Weber, B K; Bublin, M; Gaier, S; DeWitt, A M; Briza, P; Hofstetter, G; Lidholm, J; Vieths, S; Hoffmann-Sommergruber, K (2008). Characterization of Bet v 1-related allergens from kiwifruit relevant for patients with combined kiwifruit and birch pollen allergy. Molecular Nutrition & Food Research, 52(Suppl):S230-S240.

Helmchen, F; Petersen, C C H (2008). New views into the brain of mice on the move. Nature Methods, 5(11):925-926.

Seeger, H; Julius, C; Cozzari, C; Calella, A M; Dattilo, M; Aguzzi, A (2008). Prion depletion and preservation of biological activity by preparative chaotrope ultracentrifugation. Biologicals, 36(6):403-411.

Flück, M (2008). Selected papers from the 'Omics: Assembling Systems Biology' Workshop. IET systems biology, 2(6):383-384.

La Camera, G; Giugliano, M; Senn, W; Fusi, S (2008). The response of cortical neurons to in vivo-like input current: theory and experiment: I. Noisy inputs with stationary statistics. Biological Cybernetics, 99(4-5):279-301.

Giugliano, M; La Camera, G; Fusi, S; Senn, W (2008). The response of cortical neurons to in vivo-like input current: theory and experiment: II. Time-varying and spatially distributed inputs. Biological Cybernetics, 99(4-5):303-318.

Zollikofer, C P E; Weissmann, J D (2008). A morphogenetic model of cranial pneumatization based on the invasive tissue hypothesis. Anatomical Record, 291(11):1446-1454.

Cui, T; Gao, Y; Ang, C X; Puah, C M; Gutte, B; Lam, Y (2008). Hydrogen peroxide enhances enterokinase-catalysed proteolytic cleavage of fusion protein. Recent Patents on Biotechnology, 2(3):189-190.

Ott, D; Taraborrelli, C; Aguzzi, A (2008). Novel dominant-negative prion protein mutants identified from a randomized library. Protein Engineering Design and Selection : PEDS, 21(10):623-629.

Obrist, D; Hegemann, S (2008). Fluid-particle dynamics in canalithiasis. Journal of the Royal Society Interface, 5(27):1215-1229.

Wicker, T; Narechania, A; Sabot, F; Stein, J; Vu, G T H; Graner, A; Ware, D; Stein, N (2008). Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats. BMC Genomics, 9:518.

Reif, R; Sales, S; Dreier, B; Lüscher, D; Wölfel, J; Gisler, C; Baici, A; Kunz, B; Sonderegger, P (2008). Purification and enzymological characterization of murine neurotrypsin. Protein Expression and Purification, 61(1):13-21.

Lühmann, T; Rimann, M; Bittermann, A G; Hall, H (2008). Cellular uptake and intracellular pathways of PLL-g-PEG-DNA nanoparticles. Bioconjugate Chemistry, 19(9):1907-1916.

Zurbriggen, S; Tobler, K; Abril, C; Diedrich, S; Ackermann, M; Pallansch, M A; Metzler, A (2008). Isolation of sabin-like polioviruses from wastewater in a country using inactivated polio vaccine. Applied and Environmental Microbiology, 74(18):5608-5614.

Zulliger, D; Ruch, M; Tanner, S; Ribi, G (2008). Characterization of nine microsatellite loci in the sea star Astropecten aranciacus and cross-species amplification for related taxa. Molecular Ecology Resources, 8(3):634-636.

Mullane, N R; O'Gaora, P; Nally, J E; Iversen, C; Whyte, P; Wall, P G; Fannning, S (2008). Molecular analysis of the Enterobacter sakazakii O-antigen gene locus. Applied and Environmental Microbiology, 74(12):3783-3794.

Stephan, A; Mateos, J M; Kozlov, S V; Cinelli, P; Kistler, A D; Hettwer, S; Rülicke, T; Streit, P; Kunz, B; Sonderegger, P (2008). Neurotrypsin cleaves agrin locally at the synapse. FASEB Journal, 22(6):1861-73.

Allers, E; Niesner, C; Wild, C; Pernthaler, J (2008). Microbes enriched in seawater after addition of coral mucus. Applied and Environmental Microbiology, 74(10):3274-3278.

Wanner, R M; Güthlein, C; Springer, B; Böttger, E C; Ackermann, M (2008). Stabilization of the genome of the mismatch repair deficient Mycobacterium tuberculosis by context-dependent codon choice. BMC Genomics, 9:249.

Iversen, C; Druggan, P; Schumacher, S; Lehner, Angelika; Feer, C; Gschwend, K; Joosten, H; Stephan, Roger (2008). Development of a novel screening method for the isolation of "Cronobacter" spp. (Enterobacter sakazakii). Applied and Environmental Microbiology, 74(8):2550-2553.

Bollwein, Heiner; Fuchs, I; Koess, C (2008). Interrelationship between plasma membrane integrity, mitochondrial membrane potential and DNA. Reproduction in Domestic Animals, 43(2):189-195.

Waerzeggers, Y; Klein, M; Miletic, H; Himmelreich, U; Li, H; Monfared, P; Herrlinger, U; Hoehn, M; Coenen, H H; Weller, M; Winkeler, A; Jacobs, A H (2008). Multimodal imaging of neural progenitor cell fate in rodents. Molecular Imaging, 7(2):77-91.

Wu, F; Yu, J; Gehring, H (2008). Inhibitory and structural studies of novel coenzyme-substrate analogs of human histidine decarboxylase. FASEB Journal, 22(3):890-897.

Martínez Gómez, Julia M; Fischer, Stefan; Csaba, Noèmi; Kündig, Thomas M; Merkle, Hans P; Gander, Bruno; Johansen, Pål (2008). Erratum to: A protective allergy vaccine based on CpG- and protamine-containing PLGA microparticles. Pharmaceutical Research, 25(3):710.

Thiersch, M; Raffelsberger, W; Frigg, E; Samardzija, M; Wenzel, A; Poch, O; Grimm, C (2008). Analysis of the retinal gene expression profile after hypoxic preconditioning identifies candidate genes for neuroprotection. BMC Genomics, 9:73.

Mayer, C; Schiegg, K; Pasinelli, G (2008). Isolation, characterization and multiplex genotyping of 11 autosomal and four sex-linked microsatellite loci in the reed bunting, Emberiza schoeniclus (Emberizidae, Aves). Molecular Ecology Resources, 8(2):332-334.

Chhuneja, P; Kaur, S; Garg, T; Ghai, M; Kaur, S; Prashar, M; Bains, N S; Goel, R K; Keller, B; Dhaliwal, H S; Singh, K (2008). Mapping of adult plant stripe rust resistance genes in diploid A genome wheat species and their transfer to bread wheat. Theoretical and Applied Genetics, 116(3):313-324.

Karshikoff, A; Jelesarov, I (2008). Salt bridges and conformational flexibility: effect on protein stability. Biotechnology and Biotechnological Equipment, 22(1):606-611.

Peroza, E A; Freisinger, Eva (2008). Tris is a non-innocent buffer during intein-mediated protein cleavage. Protein Expression and Purification, 57(2):217-225.

Jelesarov, I; Karshikoff, A (2008). Meet to fold: the peculiar folding of oligomeric proteins. Biotechnology and Biotechnological Equipment, 22(1):598-605.

Thurnheer, T; Giertsen, E; Gmür, R; Guggenheim, B (2008). Cariogenicity of soluble starch in oral in vitro biofilm and experimental rat caries studies: a comparison. Journal of Applied Microbiology, 105(3):829-836.

Scheuermann, J; Dumelin, C E; Melkko, S; Zhang, Y; Mannocci, L; Jaggi, M; Sobek, J; Neri, D (2008). DNA-encoded chemical libraries for the discovery of MMP-3 inhibitors. Bioconjugate Chemistry, 19(3):778-785.

Mullane, N R; Ryan, M; Iversen, C; Murphy, M; O'Gaora, P; Quinn, T; Whyte, P; Wall, P G; Fanning, C (2008). Development of multiple-locus variable-number tandem-repeat analysis for the molecular subtyping of Enterobacter sakazakii. Applied and Environmental Microbiology, 74(4):1223-1231.

Nater, A; Krützen, M; Lindholm, A K (2008). Development of polymorphic microsatellite markers for the livebearing fish 'Poecilia parae'. Molecular Ecology Resources, 8(4):857-860.

Akhmetshina, A; Dees, C; Pileckyte, M; Maurer, B; Axmann, R; Jüngel, A; Zwerina, J; Gay, S; Schett, G; Distler, O; Distler, J H W (2008). Dual inhibition of c-abl and PDGF receptor signaling by dasatinib and nilotinib for the treatment of dermal fibrosis. FASEB Journal, 22(7):2214-2222.

Xu, S; Clark, T; Zheng, H; Vang, S; Li, R; Wong, G K S; Wang, J; Zheng, X (2008). Gene conversion in the rice genome. BMC Genomics, 9:93.

Maedler, K; Schulthess, F T; Bielman, C; Berney, T; Bonny, C; Prentki, M; Donath, M Y; Roduit, R (2008). Glucose and leptin induce apoptosis in human beta-cells and impair glucose-stimulated insulin secretion through activation of c-Jun N-terminal kinases. FASEB Journal, 22(6):1905-1913.

Wandeler, P; Ravaioli, S R; Bucher, T B (2008). Microsatellite DNA markers for the snow vole (Chionomys nivalis). Molecular Ecology Resources, 8(3):637-639.

Buetler, T M; Leclerc, E; Baumeyer, A; Latado, H; Newell, J; Adolfsson, O; Parisod, V; Richoz, J; Maurer, S; Foata, F; Piguet, D; Junod, S; Heizmann, C W; Delatour, T (2008). N(epsilon)-carboxymethyllysine-modified proteins are unable to bind to RAGE and activate an inflammatory response. Molecular Nutrition and Food Research, 52(3):370-378.

Zollikofer, C P E; Ponce de León, M S; Schmitz, R W; Stringer, C B (2008). New insights into mid-late Pleistocene fossil hominin paranasal sinus morphology. Anatomical Record, 291(11):1506-1516.

Kappeler, T; Pöschel, J (2008). On the well-posedness of the periodic KdV equation in high regularity classes. In: Craig, W. Hamiltonian dynamical systems and applications. Dordrecht: Springer, 431-441.

Bodenmiller, B; Campbell, D; Gerrits, B; Lam, H; Jovanovic, M; Picotti, P; Schlapbach, R; Aebersold, R (2008). PhosphoPep--a database of protein phosphorylation sites in model organisms. Nature Biotechnology, 26(12):1339-1340.

Schmidt, M; Torgersen, H; Ganguli-Mitra, A; Kelle, A; Deplazes, Anna; Biller-Andorno, N (2008). Synbiosafe e-conference:online community discussion on the societal aspects of synthetic biology. Systems and Synthetic Biology, 2(1-2):7-17.


Hostettler, N; Naggi, A; Torri, G; Ishai-Michaeli, R; Casu, B; Vlodavsky, I; Borsig, L (2007). P-selectin- and heparanase-dependent antimetastatic activity of non-anticoagulant heparins. FASEB Journal, 21(13):3562-3572.

Herzog, K; Bollwein, Heiner (2007). Application of Doppler ultrasonography in cattle reproduction. Reproduction in Domestic Animals, 42(Suppl 2):51-58.

Gómez, Julia M Martínez; Fischer, Stefan; Csaba, Noèmi; Kündig, Thomas M; Merkle, Hans P; Gander, Bruno; Johansen, Pål (2007). A protective allergy vaccine based on CpG- and protamine-containing PLGA microparticles. Pharmaceutical Research, 24(10):1927-1935.

Tommasini, L; Schnurbusch, T; Fossati, D; Mascher, F; Keller, B (2007). Association mapping of Stagonospora nodorum blotch resistance in modern European winter wheat varieties. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 115(5):697-708.

Aguzzi, A (2007). Prion biology: the quest for the test. Nature Methods, 4(8):614-616.

Eppler, E; Caelers, A; Shved, N; Hwang, G; Rahman, A M; Maclean, N; Zapf, J; Reinecke, M (2007). Insulin-like growth factor I (IGF-I) in a growth-enhanced transgenic (GH-overexpressing) bony fish, the tilapia (Oreochromis niloticus): indication for a higher impact of autocrine/paracrine than of endocrine IGF-I. Transgenic Research, 16(4):479-489.

Cui, T; Gao, Y; Liew, O W; Puah, C M; Gutte, B (2007). Efficient preparation of an acyclic permutant of kalata B1 from a recombinant fusion protein with thioredoxin. Journal of Biotechnology, 130(4):378-384.

Stephan, Roger (2007). Diagnostische Systeme zum Nachweis von Mycobacterium avium subsp. paratuberculosis. Journal für Verbraucherschutz und Lebensmittelsicherheit, 2(2):222-227.

El-Andaloussi, N; Valovka, T; Toueille, M; Hassa, P O; Gehrig, P; Covic, M; Hübscher, U; Hottiger, M O (2007). Methylation of DNA polymerase beta by protein arginine methyltransferase 1 regulates its binding to proliferating cell nuclear antigen. FASEB Journal, 21(1):26-34.

Brunner, E; Ahrens, C H; Mohanty, S; Baetschmann, H; Loevenich, S; Potthast, F; Deutsch, E W; Panse, C; de Lichtenberg, U; Rinner, O; Lee, H; Pedrioli, P G A; Malmstrom, J; Koehler, K; Schrimpf, S; Krijgsveld, J; Kregenow, F; Heck, A J R; Hafen, E; Schlapbach, R; Aebersold, R (2007). A high-quality catalog of the Drosophila melanogaster proteome. Nature Biotechnology, 25(5):576-583.

Shinohara, E T; Kaminski, J M; Segal, D J; Pelczar, P; Kolhe, R; Ryan, T; Coates, C J; Fraser, M J; Handler, A M; Yanagimachi, R; Moisyadi, S (2007). Active integration: new strategies for transgenesis. Transgenic Research, 16(3):333-9.

Bodenmiller, Bernd; Mueller, Lukas N; Pedrioli, Patrick G A; Pflieger, Delphine; Jünger, Martin A; Eng, Jimmy K; Aebersold, Ruedi; Tao, W Andy (2007). An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells. Molecular Biosystems, 3(4):275-286.

Nicolas, O; Gavín, R; Braun, N; Ureña, J M; Fontana, X; Soriano, E; Aguzzi, A; del Río, J A (2007). Bcl-2 overexpression delays caspase-3 activation and rescues cerebellar degeneration in prion-deficient mice that overexpress amino-terminally truncated prion. FASEB Journal, 21(12):3107-3117.

Hahnloser, Richard H R (2007). Cross-intensity functions and the estimate of spike-time jitter. Biological Cybernetics, 96(5):497-506.

Geisler, R; Rauch, G J; Geiger-Rudolph, S; Albrecht, Andrea; van Bebber, F; Berger, A; Busch-Nentwich, E; Dahm, R; Dekens, M P S; Dooley, C; Elli, A F; Gehring, I; Geiger, H; Geisler, M; Glaser, S; Holley, S; Huber, M; Kerr, A; Kirn, A; Knirsch, M; Konantz, M; Küchler, A M; Maderspacher, F; Neuhauss, Stephan C; Nicolson, T; Ober, E A; Praeg, E; Ray, R; Rentzsch, B; Rick, J M; Rief, E; Schauerte, H E; Schepp, C P; Schönberger, U; Schonthaler, H B; Seiler, C; Sidi, S; Söllner, C; Wehner, A; Weiler, C; Nüsslein-Volhard, Christiane (2007). Large-scale mapping of mutations affecting zebrafish development. BMC Genomics, 8:11.

Hübscher, Judith; Jansen, Andrea; Kotte, Oliver; Schäfer, Juliane; Majcherczyk, Paul A; Harris, Llinos G; Bierbaum, Gabriele; Heinemann, Matthias; Berger-Bächi, Brigitte (2007). Living with an imperfect cell wall: compensation of femAB inactivation in Staphylococcus aureus. BMC Genomics, 8:307.

Kummer, C; Winkeler, A; Dittmar, C; Bauer, B; Rueger, M A; Rueckriem, B; Heneka, M T; Vollmar, S; Wienhard, K; Fraefel, C; Heiss, W D; Jacobs, A H (2007). Multitracer positron emission tomographic imaging of exogenous gene expression mediated by a universal herpes simplex virus 1 amplicon vector. Molecular Imaging, 6(3):181-192.

Sigurdson, Christina J; Nilsson, K Peter R; Hornemann, Simone; Manco, Giuseppe; Polymenidou, Magdalini; Schwarz, Petra; Leclerc, Mario; Hammarström, Per; Wüthrich, Kurt; Aguzzi, Adriano (2007). Prion strain discrimination using luminescent conjugated polymers. Nature Methods, 4(12):1023-1030.

Willi, Barbara; Boretti, Felicitas S; Meli, Marina L; Bernasconi, Marco V; Casati, Simona; Hegglin, Daniel; Puorger, Maria; Neimark, Harold; Cattori, Valentino; Wengi, Nicole; Reusch, Claudia E; Lutz, Hans; Hofmann-Lehmann, R (2007). Real-time PCR investigation of potential vectors, reservoirs, and shedding patterns of feline hemotropic mycoplasmas. Applied and Environmental Microbiology, 73(12):3798-3802.

Bodenmiller, Bernd; Mueller, Lukas N; Mueller, Markus; Domon, Bruno; Aebersold, Ruedi (2007). Reproducible isolation of distinct, overlapping segments of the phosphoproteome. Nature Methods, 4(3):231-237.

Hust, M; Jostock, T; Menzel, C; Voedisch, B; Mohr, A; Brenneis, M; Kirsch, M I; Meier, D; Dübel, S (2007). Single chain Fab (scFab) fragment. BMC Biotechnology, 7:14.

Schmid, Peter; Lunkenheimer, Paul P; Redmann, Klaus; Rothaus, Kai; Jiang, Xiaoyi; Cryer, Colin W; Jaermann, Thomas; Niederer, Peter; Boesiger, Peter; Anderson, Robert H (2007). Statistical analysis of the angle of intrusion of porcine ventricular myocytes from epicardium to endocardium using diffusion tensor magnetic resonance imaging. The Anatomical Record, 290(11):1413-1423.


Tommasini, L; Yahiaoui, N; Srichumpa, P; Keller, B (2006). Development of functional markers specific for seven Pm3 resistance alleles and their validation in the bread wheat gene pool. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 114(1):165-175.

Rexhepaj, R; Grahammer, F; Völkl, H; Remy, C; Wagner, C A; Sandulache, D; Artunc, F; Henke, G; Nammi, S; Capasso, G; Alessi, D R; Lang, F (2006). Reduced intestinal and renal amino acid transport in PDK1 hypomorphic mice. FASEB Journal, 20(13):2214-2222.

Bossolini, Eligio; Krattinger, Simon G; Keller, Beat (2006). Development of simple sequence repeat markers specific for the Lr34 resistance region of wheat using sequence information from rice and Aegilops tauschii. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 113(6):1049-1062.

Landergott, Urs; Naciri, Yamama; Schneller, J Jakob; Holderegger, Rolf (2006). Allelic configuration and polysomic inheritance of highly variable microsatellites in tetraploid gynodioecious Thymus praecox agg. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 113(3):453-465.

Silacci, M; Brack, S S; Späth, N; Buck, A; Hillinger, S; Arni, S; Weder, W; Zardi, Luciano; Nerdi, D (2006). Human monoclonal antibodies to domain C of tenascin-C selectively target solid tumors in vivo. Protein Engineering, Design & Selection, 19(10):471-478.

Amstutz, Patrick; Koch, Holger; Binz, H Kaspar; Deuber, Stefan A; Plückthun, Andreas (2006). Rapid selection of specific MAP kinase-binders from designed ankyrin repeat protein libraries. Protein Engineering, Design & Selection, 19(5):219-229.

van Loo, Bert; Kingma, Jaap; Arand, Michael; Wubbolts, Marcel G; Janssen, Dick B (2006). Diversity and biocatalytic potential of epoxide hydrolases identified by genome analysis. Applied and Environmental Microbiology, 72(4):2905-2917.

Marcotte, H; Kõll-Klais, P; Hultberg, A; Zhao, Y; Gmür, R; Mändar, R; Mikelsaar, M; Hammarström, L (2006). Expression of single-chain antibody against RgpA protease of Porphyromonas gingivalis in Lactobacillus. Journal of Applied Microbiology, 100(2):256-263.

Tasdemir, Deniz (2006). Type II fatty acid biosynthesis, a new approach in antimalarial natural product discovery. Phytochemistry reviews: proceedings of the Phytochemical Society of Europe, 5(1):99-108.

Wicker, T; Schlagenhauf, E; Graner, A; Close, T J; Keller, B; Stein, N (2006). 454 sequencing put to the test using the complex genome of barley. BMC Genomics, 7:275.

Hilpertshauser, H; Deplazes, P; Schnyder, M; Gern, L; Mathis, A (2006). Babesia spp. Identified by PCR in Ticks Collected from Domestic and Wild Ruminants in Southern Switzerland. Applied and Environmental Microbiology, 72(10):6503-6507.

Kelm, J M; Djonov, V; Ittner, L M; Fluri, D; Born, W; Hoerstrup, S P; Fussenegger, M (2006). Design of custom-shaped vascularized tissues using microtissue spheroids as minimal building units. Tissue Engineering, 12(8):2151-2160.

Schmidt, D; Mol, A; Odermatt, B; Neuenschwander, S; Breymann, C; Gössi, M; Genoni, M; Zund, G; Hoerstrup, S P (2006). Engineering of biologically active living heart valve leaflets using human umbilical cord-derived progenitor cells. Tissue Engineering, 12(11):3223-3232.

Schreiner, B; Voss, J; Wischhusen, J; Dombrowski, Y; Steinle, A; Lochmüller, H; Dalakas, M; Melms, A; Wiendl, H (2006). Expression of toll-like receptors by human muscle cells in vitro and in vivo: TLR3 is highly expressed in inflammatory and HIV myopathies, mediates IL-8 release and up-regulation of NKG2D-ligands. FASEB Journal, 20(1):118-120.

Zimmermann, P; Schildknecht, B; Craigon, D; Garcia-Hernandez, M; Gruissem, W; May, S; Mukherjee, G; Parkinson, H; Rhee, S; Wagner, U; Hennig, L (2006). MIAME/Plant - adding value to plant microarrray experiments. Plant Methods, 2:1.

Baudis, Michael (2006). Online database and bioinformatics toolbox to support data mining in cancer cytogenetics. BioTechniques, 40(3):269-272.

Koehler, C; Niederbichler, A D; Scholz, T; Bode, B; Roos, J; Jung, F J; Hoerstrup, S P; Hellermann, J P; Wedler, V (2006). Should human chondrocytes fly? The impact of electromagnetic irradiation on chondrocyte viability and implications for their use in tissue engineering. Bioprocess and Biosystems Engineering, 29(5-6):415-420.

Böttger, E C (2006). The ribosome as a drug target. Trends in Biotechnology, 24(4):145-147.

Kelm, J M; Djonov, V; Hoerstrup, S P; Guenter, C I; Ittner, L M; Greve, F; Hierlemann, A; Sanchez-Bustamante, C D; Perriard, J C; Ehler, E; Fussenegger, M (2006). Tissue-transplant fusion and vascularization of myocardial microtissues and macrotissues implanted into chicken embryos and rats. Tissue Engineering, 12(9):2541-2553.


Kilic, Ertugrul; Kilic, Ulkan; Soliz, Jorge; Bassetti, Claudio L; Gassmann, Max; Hermann, Dirk M (2005). Brain-derived erythropoietin protects from focal cerebral ischemia by dual activation of ERK-1/-2 and Akt pathways. FASEB Journal, 19(14):2026-2028.

Brandl, H; Bachofen, R; Bischoff, M (2005). Generation of bioaerosols during manual mail unpacking and sorting. Journal of Applied Microbiology, 99(5):1099-1107.

Paul, Chandana; Bellotti, Mario; Jezernik, Sašo; Curt, Armin (2005). Development of a human neuro-musculo-skeletal model for investigation of spinal cord injury. Biological Cybernetics, 93(3):153-170.

Schimmele, Bernhard; Gräfe, Nico; Plückthun, Andreas (2005). Ribosome display of mammalian receptor domains. Protein Engineering, Design & Selection, 18(6):285-294.

Haefliger, P; Agorastos, N; Renard, A; Giambonini-Brugnoli, G; Marty, C; Alberto, R (2005). Cell uptake and radiotoxicity studies of an nuclear localization signal peptide-intercalator conjugate labeled with [99mTc(CO)3]+. Bioconjugate Chemistry, 16(3):582-587.

Dip, R; Naegeli, H (2005). More than just strand breaks: the recognition of structural DNA discontinuities by DNA-dependent protein kinase catalytic subunit. FASEB Journal, 19(7):704-715.

Ott, D; Neldner, Y; Cèbe, R; Dodevski, I; Plückthun, A (2005). Engineering and functional immobilization of opioid receptors. Protein Engineering Design and Selection : PEDS, 18(3):153-160.

Dumas, C; Petrig, J; Frei, L; Spingler, Bernhard; Schibli, R (2005). Functionalization of glucose at position C-3 for transition metal coordination: Organo-rhenium complexes with carbohydrate skeletons. Bioconjugate Chemistry, 16(2):421-428.

Schmoekel, H G; Weber, Franz E; Schense, J C; Grätz, K W; Schawalder, P; Hubbell, J A (2005). Bone repair with a form of BMP-2 engineered for incorporation into fibrin cell ingrowth matrices. Biotechnology and Bioengineering, 89(3):253-262.

Motterlini, R; Sawle, P; Hammad, J; Bains, S; Alberto, R; Foresti, R; Green, C J (2005). CORM-A1: a new pharmacologically active carbon monoxide-releasing molecule. FASEB Journal, 19(2):284-286.

Kilic, Ulkan; Kilic, Ertugrul; Soliz, Jorge; Bassetti, Claudio I; Gassmann, Max; Hermann, Dirk M (2005). Erythropoietin protects from axotomy-induced degeneration of retinal ganglion cells by activating ERK-1/-2. FASEB Journal, 19(2):249-251.

Caelers, A; Maclean, N; Hwang, G; Eppler, E; Reinecke, M (2005). Expression of endogenous and exogenous growth hormone (GH) messenger (m) RNA in a GH-transgenic tilapia (Oreochromis niloticus). Transgenic Research, 14(1):95-104.

Lecca, M R; Wagner, U; Patrignani, A; Berger, E G; Hennet, T (2005). Genome-wide analysis of the unfolded protein response in fibroblasts from congenital disorders of glycosylation type-I patients. FASEB Journal, 19(2):240-242.

Bögli-Stuber, K; Kohler, C; Seitert, G; Glanemann, B; Antognoli, M C; Salman, M D; Wittenbrink, M M; Wittwer, M; Wassenaar, T; Jemmi, T; Bissig-Choisat, B (2005). Detection of Mycobacterium avium subspecies paratuberculosis in Swiss dairy cattle by real-time PCR and culture: a comparison of the two assays. Journal of Applied Microbiology, 99(3):587-97.

Zeller, A; Arras, M; Lazaris, A; Jurd, R; Rudolph, U (2005). Distinct molecular targets for the central respiratory and cardiac actions of the general anesthetics etomidate and propofol. FASEB Journal, 19(12):1677-1679.

Tao, W Andy; Wollscheid, Bernd; O'Brien, Robert; Eng, Jimmy K; Li, Xiao-jun; Bodenmiller, Bernd; Watts, Julian D; Hood, Leroy; Aebersold, Ruedi (2005). Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry. Nature Methods, 2(8):591-598.

Kelm, J M; Diaz Sanchez-Bustamante, C; Ehler, E; Hoerstrup, S P; Djonov, V; Ittner, L; Fussenegger, M (2005). VEGF profiling and angiogenesis in human microtissues. Journal of Biotechnology, 118(2):213-229.


Maga, G; Blanca, G; Shevelev, I; Frouin, I; Ramadan, K; Spadari, S; Villani, G; Hübscher, U (2004). The human DNA polymerase lambda interacts with PCNA through a domain important for DNA primer binding and the interaction is inhibited by p21/WAF1/CIP1. FASEB Journal, 18(14):1743-1745.

Ling, Hong-Qing; Qiu, Jiwen; Singh, Ravi P; Keller, Beat (2004). Identification and genetic characterization of an Aegilops tauschii ortholog of the wheat leaf rust disease resistance gene Lr1. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 109(6):1133-1138.

Pauli-Magnus, Christiane; Kroetz, Deanna L (2004). Functional Implications of Genetic Polymorphisms in the Multidrug Resistance Gene MDR1 (ABCB1). Pharmaceutical Research, 21(6):904-913.

Pratt, A B; Weber, Franz E; Schmoekel, H G; Müller, R; Hubbell, J A (2004). Synthetic extracellular matrices for in situ tissue engineering. Biotechnology and Bioengineering, 86(1):27-36.

Jaeger, R; Haslwanter, T (2004). Otolith responses to dynamical stimuli: results of a numerical investigation. Biological Cybernetics, 90(3):165-175.

Schachermayr, G; Winzeler, M; Keller, B; Paillard, S; Schnurbusch, T; Schori, A; Messmer, M (2004). Dissection of quantitative and durable leaf rust resistance in Swiss winter wheat reveals a major resistance QTL in the Lr34 chromosomal region. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 108(3):477-484.

Stehlik, I; Blattner, F R (2004). Sex-specific SCAR markers in the dioecious plant Rumex nivalis (Polygonaceae) and implications for the evolution of sex chromosomes. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 108(2):238-242.

Mundwiler, S; Candreia, L; Häfliger, P; Ortner, K; Alberto, R (2004). Preparation of no-carrier-added technetium-99m complexes via metal-assisted cleavage from a solid phase. Bioconjugate Chemistry, 15(1):195-202.

Ott, D; Frischknecht, R; Plückthun, A (2004). Construction and characterization of a kappa opioid receptor devoid of all free cysteines. Protein Engineering Design and Selection : PEDS, 17(1):37-48.

Welter, H; Bollwein, Heiner; Weber, F; Rohr, S (2004). Expression of endothelial and inducible nitric oxide synthases is modulated in the endometrium of cyclic and early pregnant mares. Reproduction, Fertility and Development, 16(7):689-698.


Schnurbusch, T; Paillard, S; Fossati, D; et al (2003). Detection of QTLs for Stagonospora glume blotch resistance in Swiss winter wheat. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 107(7):1226-1234.

Mazrier, H (2003). Inheritance, Biochemical Abnormalities, and Clinical Features of Feline Mucolipidosis II: The First Animal Model of Human I-Cell Disease. Journal of Heredity, 94(5):363-3