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2022

Boets, Stephanie; Johannesen, Katrine M; Destree, Anne; Manti, Filippo; Ramantani, Georgia; Lesca, Gaetan; Vercueil, Laurent; Koenig, Mary Kay; Striano, Pasquale; Møller, Rikke Steensbjerre; Cooper, Edward; Weckhuysen, Sarah (2022). Adult phenotype of KCNQ2 encephalopathy. Journal of Medical Genetics, 59(6):528-535.

Häfliger, Irene M; Wolf‐Hofstetter, Sonja; Casola, Christina; Hetzel, Udo; Seefried, Franz R; Drögemüller, Cord (2022). A de novo variant in the bovine ADAMTSL4 gene in an Original Braunvieh calf with congenital cataract. Animal Genetics, 53(3):416-421.

Lendvay, Bertalan; Cartier, Laurent E; Costantini, Federica; Iwasaki, Nozomu; Everett, Meredith V; Krzemnicki, Michael S; Kratzer, Adelgunde; Morf, Nadja V (2022). Coral-ID: A forensically validated genetic test to identify precious coral material and its application to objects seized from illegal traffic. Forensic Science International. Genetics, 58:102663.

Forny, Patrick; Wicht, Andrea; Rüfenacht, Véronique; Cremonesi, Alessio; Häberle, Johannes (2022). Recovery of enzyme activity in biotinidase deficient individuals during early childhood. Journal of Inherited Metabolic Disease, 45(3):605-620.

Ashby, Ben; Farine, Damien R (2022). Social information use shapes the coevolution of sociality and virulence. Evolution:Epub ahead of print.

Albert, Eva M; García-Navas, Vicente (2022). Population structure and genetic diversity of the threatened pygmy newt Triturus pygmaeus in a network of natural and artificial ponds. Conservation Genetics:Epub ahead of print.

Kaczmarek, Alexander Tobias; Bender, Daniel; Gehling, Titus; Kohl, Joshua Benedict; Daimagüler, Hülya‐Sevcan; Santamaria‐Araujo, José Angel; Liebau, Max Christoph; Koy, Anne; Cirak, Sebahattin; Schwarz, Guenter (2022). A defect in molybdenum cofactor binding causes an attenuated form of sulfite oxidase deficiency. Journal of Inherited Metabolic Disease, 45(2):169-182.

Nowak, Albina; Haddad, George; Kistler, Andreas D; Nlandu-Khodo, Stellor; Beuschlein, Felix; Wüthrich, Rudolf P; Lorenzen, Johan M; Kölling, Malte (2022). Circular RNA-based biomarkers in blood of patients with Fabry disease and related phenotypes. Journal of Medical Genetics, 59(3):279-286.

Chan, Tatjana; Grisch-Chan, Hiu Man; Schmierer, Philipp; Subotic, Ulrike; Rimann, Nicole; Scherer, Tanja; Hetzel, Udo; Bozza, Matthias; Harbottle, Richard; Williams, James A; Steblaj, Barbara; Ringer, Simone K; Häberle, Johannes; Sidler, Xaver; Thöny, Beat (2022). Delivery of non-viral naked DNA vectors to liver in small weaned pigs by hydrodynamic retrograde intrabiliary injection. Molecular Therapy - Methods & Clinical Development, 24:268-279.

Tusup, Marina; Kündig, Thomas M; Pascolo, Steve (2022). Epitranscriptomics modifier pentostatin indirectly triggers Toll-like receptor 3 and can enhance immune infiltration in tumors. Molecular Therapy, 30(3):1163-1170.

Nowak, Albina; Beuschlein, Felix; Sivasubramaniam, Visnuka; Kasper, David; Warnock, David G (2022). Lyso-Gb3 associates with adverse long-term outcome in patients with Fabry disease. Journal of Medical Genetics, 59(3):287-293.

Fischer, Susanne; Kuebler, Ulrike; Abbruzzese, Elvira; Breymann, Christian; Mernone, Laura; Ehlert, Ulrike (2022). Endogenous oestradiol and progesterone as predictors of oncogenic human papillomavirus (HPV) persistence. BMC Cancer, 22(1):145.

Potente, Giacomo; Léveillé-Bourret, Étienne; Yousefi, Narjes; Choudhury, Rimjhim Roy; Keller, Barbara; Diop, Seydina Issa; Duijsings, Daniël; Pirovano, Walter; Lenhard, Michael; Szövényi, Péter; Conti, Elena (2022). Comparative Genomics Elucidates the Origin of a Supergene Controlling Floral Heteromorphism. Molecular Biology and Evolution, 39(2):msac035.

Emmenegger, Marc; Kumar, Sreedhar Saseendran; Emmenegger, Vishalini; Malinauskas, Tomas; Buettner, Thomas; Rosen, Laura E; Schierack, Peter; Sprinzl, Martin F; Sommer, Clemens J; Lackner, Karl J; Aguzzi, Adriano; Roggenbuck, Dirk; Frauenknecht, Katrin Barbara Magda (2022). Correction: Anti-prothrombin autoantibodies enriched after infection with SARS-CoV-2 and influenced by strength of antibody response against SARS-CoV-2 proteins. PLoS Pathogens, 18(2):e1010289.

De Cuyper, Annelies; Winkler, Daniela E; Tütken, Thomas; Bosch, Guido; Hummel, Jürgen; Kreuzer, Michael; Muñoz Saravia, Arturo; Janssens, Geert P J; Clauss, Marcus (2022). Digestion of bamboo compared to grass and lucerne in a small hindgut fermenting herbivore, the guinea pig (Cavia porcellus). Journal of Experimental Zoology. Part A, Ecological and Integrative Physiology, 337(2):128-140.

Cayuela, Hugo; Lemaître, Jean‐François; Léna, Jean‐Paul; Ronget, Victor; Martínez‐Solano, Iñigo; Muths, Erin; Pilliod, David S; Schmidt, Benedikt R; Sánchez-Montes, Gregorio; Gutiérrez-Rodríguez, Jorge; Pyke, Graham; Grossenbacher, Kurt; Lenzi, Omar; Bosch, Jaime; Beard, Karen H; Woolbright, Lawrence L; Lambert, Brad A; Green, David M; Jreidini, Nathalie; Garwood, Justin M; Fisher, Robert N; Matthews, Kathleen; Dudgeon, David; Lau, Anthony; Speybroeck, Jeroen; Homan, Rebecca; Jehle, Robert; Başkale, Eyup; Mori, Emiliano; Arntzen, Jan W; Joly, Pierre; Stiles, Rochelle M; Lannoo, Michael J; Maerz, John C; Lowe, Winsor H; Valenzuela-Sánchez, Andrés; Christiansen, Ditte G; et al (2022). Sex‐related differences in aging rate are associated with sex chromosome system in amphibians. Evolution, 76(2):346-356.

de Leeuw, Sherida M; Kirschner, Aron W T; Lindner, Karina; Rust, Ruslan; Budny, Vanessa; Wolski, Witold E; Gavin, Anne-Claude; Nitsch, Roger M; Tackenberg, Christian (2022). APOE2, E3, and E4 differentially modulate cellular homeostasis, cholesterol metabolism, and inflammatory response in isogenic iPSC-derived astrocytes. Stem Cell Reports, 17(1):110-126.

Kessler, Camille; Brambilla, Alice; Waldvogel, Dominique; Camenisch, Glauco; Biebach, Iris; Leigh, Deborah M; Grossen, Christine; Croll, Daniel (2022). A robust sequencing assay of a thousand amplicons for the high‐throughput population monitoring of Alpine ibex immunogenetics. Molecular Ecology Resources, 22(1):66-85.

Kiener, Sarah; Rostaher, Ana; Rüfenacht, Silvia; Jagannathan, Vidhya; Sundberg, John P; Welle, Monika; Leeb, Tosso (2022). Independent DSG4 frameshift variants in cats with hair shaft dystrophy. Molecular Genetics and Genomics, 297(1):147-154.

Stritt, Christoph; Gimmi, Elena L; Wyler, Michele; Bakali, Abdelmonaim H; Skalska, Aleksandra; Hasterok, Robert; Mur, Luis A J; Pecchioni, Nicola; Roulin, Anne C (2022). Migration without interbreeding: Evolutionary history of a highly selfing Mediterranean grass inferred from whole genomes. Molecular Ecology, 31(1):70-85.

Mossion, Vinciane; Dauphin, Benjamin; Grant, Jason; Kessler, Michael; Zemp, Niklaus; Croll, Daniel (2022). Transcriptome‐wide SNPs for Botrychium lunaria ferns enable fine‐grained analysis of ploidy and population structure. Molecular Ecology Resources, 22(1):254-271.

Schubert, Jasmin; Li, Yanru; Mendes, Marta A; Fei, Danli; Dickinson, Hugh; Moore, Ian; Baroux, Célia (2022). A procedure for Dex-induced gene transactivation in Arabidopsis ovules. Plant Methods, 18:41.

Zosel, Franziska; Holla, Andrea; Schuler, Benjamin (2022). Labeling of Proteins for Single-Molecule Fluorescence Spectroscopy. In: Munoz, Victor. Protein Folding Methods and Protocols. New York: Springer, 207-233.

Romdhane, Sana; Spor, Aymé; Banerjee, Samiran; Breuil, Marie-Christine; Bru, David; Chabbi, Abad; Hallin, Sara; van der Heijden, Marcel G A; Saghai, Aurélien; Philippot, Laurent (2022). Land-use intensification differentially affects bacterial, fungal and protist communities and decreases microbiome network complexity. Environmental Microbiome, 17:1.

2021

De Rossi, Pierre; Lewis, Amanda J; Furrer, Johanna; De Vos, Laura; Demeter, Tomas; Zbinden, Aurélie; Zhong, Weijia; Wiersma, Vera I; Scialo, Carlo; Weber, Julien; Guo, Zhongning; Scaramuzza, Stefano; Di Fabrizio, Marta; Böing, Carolin; Castaño‐Díez, Daniel; Al‐Amoudi, Ashraf; Pérez‐Berlanga, Manuela; Lashley, Tammaryn; Stahlberg, Henning; Polymenidou, Magdalini (2021). FTLD‐TDP assemblies seed neoaggregates with subtype‐specific features via a prion‐like cascade. EMBO Reports, 22(12):e53877.

Zhang, Xiang; Schuhmachers, Patrick; Mourão, André; et al; Murer, Anita; Münz, Christian (2021). PLK1-dependent phosphorylation restrains EBNA2 activity and lymphomagenesis in EBV-infected mice. EMBO Reports, 22(12):e53007.

Panagopoulos, Andreas; Altmeyer, Matthias (2021). When the RAP (80) fades out, you can hear BRCA1 RING. EMBO Reports, 22(12):e54116.

Emmenegger, Marc; Kumar, Sreedhar Saseendran; Emmenegger, Vishalini; Malinauskas, Tomas; Buettner, Thomas; Rose, Laura; Schierack, Peter; Sprinzl, Martin F; Sommer, Clemens J; Lackner, Karl J; Aguzzi, Adriano; Roggenbuck, Dirk; Frauenknecht, Katrin B M (2021). Anti-prothrombin autoantibodies enriched after infection with SARS-CoV-2 and influenced by strength of antibody response against SARS-CoV-2 proteins. PLoS Pathogens, 17(12):e1010118.

Bai, Yu; Caussinus, Emmanuel; Leo, Stefano; Bosshardt, Fritz; Myachina, Faina; Rot, Gregor; Robinson, Mark D; Lehner, Christian F (2021). A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells. BMC Genomics, 22:771.

Milosavljevic, Stefan; Kuo, Tony; Decarli, Samuele; Mohn, Lucas; Sese, Jun; Shimizu, Kentaro K; Shimizu-Inatsugi, Rie; Robinson, Mark D (2021). ARPEGGIO: Automated Reproducible Polyploid EpiGenetic GuIdance workflOw. BMC Genomics, 22:547.

Gutzmer, Ralf; Robert, Caroline; Loquai, Carmen; Schadendorf, Dirk; Squittieri, Nicholas; Arntz, Ramon; Martelli, Serena; Dummer, Reinhard (2021). Assessment of various efficacy outcomes using ERIVANCE-like criteria in patients with locally advanced basal cell carcinoma receiving sonidegib: results from a preplanned sensitivity analysis. BMC Cancer, 21:1244.

Hiltpold, Maya; Kadri, Naveen Kumar; Janett, Fredi; Witschi, Ulrich; Schmitz-Hsu, Fritz; Pausch, Hubert (2021). Autosomal recessive loci contribute significantly to quantitative variation of male fertility in a dairy cattle population. BMC Genomics, 22(1):225.

Çilingir, F G; Hansen, Dennis; Ozgul, Arpat; Grossen, Christine (2021). Design of SNP markers for Aldabra giant tortoises using low coverage ddRAD-seq. Conservation Genetics Resources, 13(4):409-412.

Mathis, Déborah; Sass, Jörn Oliver; Graubner, Claudia; Schoster, Angelika (2021). Diagnosis of atypical myopathy based on organic acid and acylcarnitine profiles and evolution of biomarkers in surviving horses. Molecular Genetics and Metabolism Reports, 29:100827.

Alther, Roman; Fronhofer, Emanuel A; Altermatt, Florian (2021). Dispersal behaviour and riverine network connectivity shape the genetic diversity of freshwater amphipod metapopulations. Molecular Ecology, 30(24):6551-6565.

Boehi, Flurina; Manetsch, Patrick; Hottiger, Michael O (2021). Interplay between ADP-ribosyltransferases and essential cell signaling pathways controls cellular responses. Cell Discovery, 7(1):104.

Häberle, Johannes; Moore, Marvin B; Haskins, Nantaporn; Rüfenacht, Véronique; Rokicki, Dariusz; Rubio‐Gozalbo, Estela; Tuchman, Mendel; Longo, Nicola; Yandell, Mark; Andrews, Ashley; AhMew, Nicholas; Caldovic, Ljubica (2021). Noncoding sequence variants define a novel regulatory element in the first intron of the N-acetylglutamate synthase gene. Human Mutation, 42(12):1624-1636.

Bernardo-Faura, Marti; Rinas, Melanie; Wirbel, Jakob; Pertsovskaya, Inna; Pliaka, Vicky; Messinis, Dimitris E; Vila, Gemma; Sakellaropoulos, Theodore; Faigle, Wolfgang; Stridh, Pernilla; Behrens, Janina R; Olsson, Tomas; Martin, Roland; Paul, Friedemann; Alexopoulos, Leonidas G; Villoslada, Pablo; Saez-Rodriguez, Julio (2021). Prediction of combination therapies based on topological modeling of the immune signaling network in multiple sclerosis. Genome Medicine, 13:117.

Schmeing, Stephan; Robinson, Mark D (2021). ReSeq simulates realistic Illumina high-throughput sequencing data. Genome Biology, 22:67.

Piazza, Stefano; Campa, Manuela; Pompili, Valerio; Costa, Lorenza Dalla; Salvagnin, Umberto; Nekrasov, Vladimir; Zipfel, Cyril; Malnoy, Mickael (2021). The Arabidopsis pattern recognition receptor EFR enhances fire blight resistance in apple. Horticulture Research, 8:204.

Lankheet, Imke; Vicente, Mário; Barbieri, Chiara; Schlebusch, Carina (2021). The performance of common SNP arrays in assigning African mitochondrial haplogroups. BMC Genomics, 22:43.

Greber, Urs F (2021). Two years into COVID-19 – Lessons in SARS-CoV-2 and a perspective from papers in FEBS Letters. FEBS letters, 595(23):2847-2853.

Pape, Thorben; Hunkemöller, Anna Maria; Kümpers, Philipp; Haller, Hermann; David, Sascha; Stahl, Klaus (2021). Targeting the "sweet spot" in septic shock - A perspective on the endothelial glycocalyx regulating proteins Heparanase-1 and -2. Matrix Biology Plus, 12:100095.

Mora‐Carrera, Emiliano; Stubbs, Rebecca L; Keller, Barbara; Léveillé‐Bourret, Étienne; de Vos, Jurriaan M; Szövényi, Péter; Conti, Elena (2021). Different molecular changes underlie the same phenotypic transition: Origins and consequences of independent shifts to homostyly within species. Molecular Ecology:Epub ahead of print.

Martin, Louise F; Ackermans, Nicole L; Richter, Henning; Kircher, Patrick; Hummel, Jürgen; Codron, Daryl; Clauss, Marcus; Hatt, Jean-Michel (2021). Macrowear effects of external quartz abrasives of different size and concentration in rabbits (Oryctolagus cuniculus). Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution:Epub ahead of print.

Balcarcel, A M; Geiger, M; Clauss, M; Sánchez‐Villagra, M R (2021). The mammalian brain under domestication: Discovering patterns after a century of old and new analyses. Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution:Epub ahead of print.

Forny, Patrick; Plessl, Tanja; Frei, Caroline; Bürer, Celine; Froese, D Sean; Baumgartner, Matthias R (2021). Spectrum and characterization of bi-allelic variants in MMAB causing cblB-type methylmalonic aciduria. Human Genetics:Epub ahead of print.

Peña‐Hernández, Rodrigo; Aprigliano, Rossana; Carina Frommel, Sandra; Pietrzak, Karolina; Steiger, Seraina; Roganowicz, Marcin; Lerra, Luigi; Bizzarro, Juliana; Santoro, Raffaella (2021). BAZ2A‐mediated repression via H3K14ac‐marked enhancers promotes prostate cancer stem cells. EMBO Reports, 22(11):e53014.

Denoth-Lippuner, Annina; Jaeger, Baptiste N; Liang, Tong; Royall, Lars N; Chie, Stefanie E; Buthey, Kilian; Machado, Diana; Korobeynyk, Vladislav I; Kruse, Merit; Munz, Clara M; Gerbaulet, Alexander; Simons, Benjamin D; Jessberger, Sebastian (2021). Visualization of individual cell division history in complex tissues using iCOUNT. Cell Stem Cell, 28(11):2020-2034.e12.

Polanco F., Andrea; Richards, Eilísh; Flück, Benjamin; Valentini, Alice; Altermatt, Florian; Brosse, Sébastien; Walser, Jean‐Claude; Eme, David; Marques, Virginie; Manel, Stéphanie; Albouy, Camille; Dejean, Tony; Pellissier, Loïc (2021). Comparing the performance of 12S mitochondrial primers for fish environmental DNA across ecosystems. Environmental DNA, 3(6):1113-1127.

San Roman, Magdalena; Wagner, Andreas (2021). Diversity begets diversity during community assembly until ecological limits impose a diversity ceiling. Molecular Ecology, 30(22):5874-5887.

Freitag, Johanna R B; Wilkens, Mirja R; Muscher-Banse, A S; Gerstner, Kerstin; Schnepel, N; Torgerson, Paul R; Liesegang, Annette (2021). Effects of diets differing in dietary cation-anion difference and calcium concentration on calcium homeostasis in neutered male sheep. Journal of Dairy Science, 104(11):11537-11552.

Hirota, Shun K; Yasumoto, Akiko A; Nitta, Kozue; Tagane, Misa; Miki, Nozomu; Suyama, Yoshihisa; Yahara, Tetsukazu (2021). Evolutionary history of Hemerocallis in Japan inferred from chloroplast and nuclear phylogenies and levels of interspecific gene flow. Molecular Phylogenetics and Evolution, 164:107264.

Kido, Jun; Matsumoto, Shirou; Häberle, Johannes; Inomata, Yukihiro; Kasahara, Mureo; Sakamoto, Seisuke; Horikawa, Reiko; Tanemura, Akihiro; Okajima, Hideaki; Suzuki, Tatsuya; Nakamura, Kimitoshi (2021). Role of liver transplantation in urea cycle disorders: Report from a nationwide study in Japan. Journal of Inherited Metabolic Disease, 44(6):1311-1322.

Cervantes-Gracia, Karla; Gramalla-Schmitz, Anna; Weischedel, Julian; Chahwan, Richard (2021). APOBECs orchestrate genomic and epigenomic editing across health and disease. Trends in Genetics : Tig, 37(11):1028-1043.

VanSickle, Elizabeth A; Michael, Julianne; Bachmann, André S; Rajasekaran, Surender; Prokop, Jeremy W; Kuzniecky, Ruben; Hofstede, Floris C; Steindl, Katharina; Rauch, Anita; Lipson, Mark H; Bupp, Caleb P (2021). Expanding the phenotype: Four new cases and hope for treatment in Bachmann-Bupp syndrome. American Journal of Medical Genetics. Part A, 185(11):3485-3493.

Zheng, Jia; Guo, Ning; Wagner, Andreas (2021). Mistranslation Reduces Mutation Load in Evolving Proteins through Negative Epistasis with DNA Mutations. Molecular Biology and Evolution, 38(11):4792-4804.

Heinzer, Daniel; Avar, Merve; Pease, Daniel Patrick; Dhingra, Ashutosh; Yin, Jiang-An; Schaper, Elke; Doğançay, Berre; Emmenegger, Marc; Spinelli, Anna; Maggi, Kevin; Chincisan, Andra; Mead, Simon; Hornemann, Simone; Heutink, Peter; Aguzzi, Adriano (2021). Novel regulators of PrPC biosynthesis revealed by genome-wide RNA interference. PLoS Pathogens, 17(10):e1010013.

Balakrishna, Suraj; Salazar-Vizcaya, Luisa; Schmidt, Axel J; Kachalov, Viacheslav; Kusejko, Katharina; Thurnheer, Maria Christine; Roth, Jan A; Nicca, Dunja; Cavassini, Matthias; Battegay, Manuel; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F; Rauch, Andri; Kouyos, Roger D; Swiss HIV Cohort Study (2021). Assessing the drivers of syphilis among men who have sex with men in Switzerland reveals a key impact of screening frequency: A modelling study. PLoS Computational Biology, 17(10):e1009529.

Flores Ramos, Stephany; Brugger, Silvio D; Escapa, Isabel Fernandez; Skeete, Chelsey A; Cotton, Sean L; Eslami, Sara M; Gao, Wei; Bomar, Lindsey; Tran, Tommy H; Jones, Dakota S; Minot, Samuel; Roberts, Richard J; Johnston, Christopher D; Lemon, Katherine P (2021). Genomic Stability and Genetic Defense Systems in Dolosigranulum pigrum, a Candidate Beneficial Bacterium from the Human Microbiome. mSystems, 6(5):e0042521.

Brachet, Morgane A A; Vullioud, Philippe; Ganswindt, Andre; Manser, Marta B; Keller, Matthieu; Clutton-Brock, Tim H (2021). Parity predicts allonursing in a cooperative breeder. Journal of Mammalogy, 102(5):1365-1374.

Tromans-Coia, Callum; Sanchi, Andrea; Moeller, Giuliana K; Timinszky, Gyula; Lopes, Massimo; Ahel, Ivan (2021). TARG1 protects against toxic DNA ADP-ribosylation. Nucleic Acids Research, 49(18):10477-10492.

Börold, Jacob; Eletto, Davide; Busnadiego, Idoia; Mair, Nina K; Moritz, Eva; Schiefer, Samira; Schmidt, Nora; Petric, Philipp P; Wong, W Wei-Lynn; Schwemmle, Martin; Hale, Benjamin G (2021). BRD9 is a druggable component of interferon-stimulated gene expression and antiviral activity. EMBO Reports, 22(10):e52823.

Säle, Verena; Palenzuela, Javier; Azcón-Aguilar, Concepción; Sánchez-Castro, Iván; da Silva, Gladstone Alves; Seitz, Benjamin; Sieverding, Ewald; van der Heijden, Marcel G A; Oehl, Fritz (2021). Ancient lineages of arbuscular mycorrhizal fungi provide little plant benefit. Mycorrhiza, 31(5):559-576.

Birch, Joanne L; Kocyan, Alexander (2021). Biogeography of the monocotyledon astelioid clade (Asparagales): A history of long-distance dispersal and diversification with emerging habitats. Molecular Phylogenetics and Evolution, 163:107203.

Leigh, Deborah M; Lischer, Heidi E L; Guillaume, Frédéric; Grossen, Christine; Günther, Torsten (2021). Disentangling adaptation from drift in bottlenecked and reintroduced populations of Alpine ibex. Molecular Ecology Resources, 21(7):2350-2363.

Figueiredo, Alexandre R T; Wagner, Andreas; Kümmerli, Rolf (2021). Ecology drives the evolution of diverse social strategies in Pseudomonas aeruginosa. Molecular Ecology, 30(20):5214-5228.

Pawlowski, Jan; Apothéloz‐Perret‐Gentil, Laure; Altermatt, Florian (2021). Environmental versus extra‐organismal DNA. Molecular Ecology, 30(19):4606-4607.

Hettmer, Simone; Dachy, Guillaume; Seitz, Guido; Agaimy, Abbas; Duncan, Catriona; Jongmans, Marjolijn; Hirsch, Steffen; Kventsel, Iris; Kordes, Uwe; de Krijger, Ronald R; Metzler, Markus; Michaeli, Orli; Nemes, Karolina; Poluha, Anna; Ripperger, Tim; Russo, Alexandra; Smetsers, Stephanie; Sparber-Sauer, Monika; Stutz, Eveline; Bourdeaut, Franck; Kratz, Christian P; Demoulin, Jean-Baptiste (2021). Genetic testing and surveillance in infantile myofibromatosis: a report from the SIOPE Host Genome Working Group. Familial cancer, 20(4):327-336.

Unglaub, Bianca; Cayuela, Hugo; Schmidt, Benedikt R; Preißler, Kathleen; Glos, Julian; Steinfartz, Sebastian (2021). Context‐dependent dispersal determines relatedness and genetic structure in a patchy amphibian population. Molecular Ecology, 30(20):5009-5028.

García-Martín, Ana B; Schmitt, Sarah; Zeeh, Friederike; Perreten, Vincent (2021). Complete Circular Genome Sequences of Brachyspira hyodysenteriae Isolates of the Four Different Sequence Types Causing Swine Dysentery in Switzerland. Microbiology Resource Announcements, 10(39):e0084721.

Immel, Alexander; Key, Felix M; Szolek, András; et al; Schuenemann, Verena J; Reiter, Ella (2021). Analysis of genomic DNA from medieval plague victims suggests long-term effect of Yersinia pestis on human immunity genes. Molecular Biology and Evolution, 38(10):4059-4076.

Cuénod, Aline; Wüthrich, Daniel; Seth-Smith, Helena M B; Ott, Chantal; Gehringer, Christian; Foucault, Frédéric; Mouchet, Roxanne; Kassim, Ali; Revathi, Gunturu; Vogt, Deborah R; von Felten, Stefanie; Bassetti, Stefano; Tschudin-Sutter, Sarah; Hettich, Timm; Schlotterbeck, Götz; Homberger, Christina; Casanova, Carlo; Moran-Gilad, Jacob; Sagi, Orli; Rodríguez-Sánchez, Belén; Müller, Franco; Aerni, Martina; Gaia, Valeria; van Dessel, Helke; Kampinga, Greetje A; Müller, Claudia; Daubenberger, Claudia; Pflüger, Valentin; Egli, Adrian (2021). Whole-genome sequence-informed MALDI-TOF MS diagnostics reveal importance of Klebsiella oxytoca group in invasive infections: a retrospective clinical study. Genome Medicine, 13:150.

Posada-Céspedes, Susana; Van Zyl, Gert; Montazeri, Hesam; Kuipers, Jack; Rhee, Soo-Yon; Kouyos, Roger; Günthard, Huldrych F; Beerenwinkel, Niko (2021). Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C. PLoS Computational Biology, 17(9):e1008363.

Striednig, Bianca; Lanner, Ulrike; Niggli, Selina; Katic, Ana; Vormittag, Simone; Brülisauer, Sabrina; Hochstrasser, Ramon; Kaech, Andres; Welin, Amanda; Flieger, Antje; Ziegler, Urs; Schmidt, Alexander; Hilbi, Hubert; Personnic, Nicolas (2021). Quorum sensing governs a transmissive Legionella subpopulation at the pathogen vacuole periphery. EMBO Reports, 22(9):e52972.

Kolesnik-Goldmann, Natalia; Bodendoerfer, Elias; Röthlin, Kim; Herren, Sebastian; Imkamp, Frank; Marchesi, Martina; Mancini, Stefano (2021). Rapid Detection of PBP2a in Staphylococci from Shortly Incubated Subcultures of Positive Blood Cultures by an Immunochromatographic Assay. Microbiology Spectrum, 9(1):e0046221.

Ferreira, Carlos R; Martinelli, Diego; Blau, Nenad (2021). Clinical and biochemical footprints of inherited metabolic diseases. VI. Metabolic dermatoses. Molecular Genetics and Metabolism, 134(1-2):87-95.

Bräunlich, Stephanie; Koller, Teresa; Glauser, Gaétan; Krattinger, Simon G; Keller, Beat (2021). Expression of the wheat disease resistance gene Lr34 in transgenic barley leads to accumulation of abscisic acid at the leaf tip. Plant Physiology and Biochemistry, 166:950-957.

Martin, Roland; Sospedra, Mireia; Eiermann, Thomas; Olsson, Tomas (2021). Multiple sclerosis: doubling down on MHC. Trends in Genetics : Tig, 37(9):784-797.

Corrêa, Thiago; Feltes, Bruno César; Schinzel, Albert; Riegel, Mariluce; Riegel, Mariluce (2021). Network-based analysis using chromosomal microdeletion syndromes as a model. American Journal of Medical Genetics. Part C: Seminars in Medical Genetics, 187(3):337-348.

Salzer, Ralf; Clark, Jordan J; Vaysburd, Marina; Chang, Veronica T; Albecka, Anna; Kiss, Leo; Sharma, Parul; Gonzalez Llamazares, Andres; Kipar, Anja; Hiscox, Julian A; Owen, Andrew; Aricescu, A Radu; Stewart, James P; James, Leo C; Löwe, Jan (2021). Single‐dose immunisation with a multimerised SARS‐CoV‐2 receptor binding domain (RBD) induces an enhanced and protective response in mice. FEBS letters, 595(18):2323-2340.

Sato, Takehiro; Adachi, Noboru; Kimura, Ryosuke; Hosomichi, Kazuyoshi; Yoneda, Minoru; Oota, Hiroki; Tajima, Atsushi; Toyoda, Atsushi; Kanzawa-Kiriyama, Hideaki; Matsumae, Hiromi; Koganebuchi, Kae; Shimizu, Kentaro K; Shinoda, Ken-Ichi; Hanihara, Tsunehiko; Weber, Andrzej; Kato, Hirofumi; Ishida, Hajime (2021). Whole Genome Sequencing of a 900-year-old Human Skeleton Supports Two Past Migration Events from the Russian Far East to Northern Japan. Genome Biology and Evolution, 13(9):Epub ahead of print.

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Dasmeh, Pouria; Wagner, Andreas (2021). Natural Selection on the Phase-Separation Properties of FUS during 160 My of Mammalian Evolution. Molecular Biology and Evolution, 38(3):940-951.

Radio, Francesca Clementina; Pang, Kaifang; Ciolfi, Andrea; Levy, Michael A; Hernandez-Garcia, Andres; et al; Joset, Pascal; Steindl, Katharina; Rauch, Anita (2021). SPEN haploinsufficiency causes a neurodevelopmental disorder overlapping proximal 1p36 deletion syndrome with an episignature of X chromosomes in females. American Journal of Human Genetics, 108(3):502-516.

Germani, Federico; Wäscher, Sebastian; Biller-Andorno, Nikola (2021). A CRISPR response to pandemics? : Exploring the ethics of genetically engineering the human immune system. EMBO Reports, 22(3):e52319.

Alterauge, Amelie; Lösch, Sandra; Sulzer, Andrea; Gysi, Mario; Haas, Cordula (2021). Beyond simple kinship and identification. aDNA analyses from a 17th-19th century crypt in Germany. Forensic Science International. Genetics, 53:102498.

Horvath, Gabriella A; Blau, Nenad; Ferreira, Carlos R (2021). Clinical and biochemical footprints of inherited metabolic disease. V. Cerebral palsy phenotypes. Molecular Genetics and Metabolism:Epub ahead of print.

Bodenhausen, Natacha; Deslandes-Hérold, Gabriel; Waelchli, Jan; Held, Alain; van der Heijden, Marcel G A; Schlaeppi, Klaus (2021). Relative qPCR to quantify colonization of plant roots by arbuscular mycorrhizal fungi. Mycorrhiza, 31(2):137-148.

Brücher, Dominik; Kirchhammer, Nicole; Smith, Sheena N; Schumacher, Jatina; Schumacher, Nina; Kolibius, Jonas; Freitag, Patrick C; Schmid, Markus; Weiss, Fabian; Keller, Corina; Grove, Melanie; Greber, Urs F; Zippelius, Alfred; Plückthun, Andreas (2021). iMATCH: an integrated modular assembly system for therapeutic combination high-capacity adenovirus gene therapy. Molecular Therapy - Methods & Clinical Development, 20:572-586.

Russkamp, Norman F; Myburgh, Renier; Kiefer, Jonathan D; Neri, Dario; Manz, Markus G (2021). Anti-CD117 immunotherapy to eliminate hematopoietic and leukemia stem cells. Experimental Hematology, 95:31-45.

Lenherr, Nina; Christodoulou, John; Duley, John; Dobritzsch, Doreen; Fairbanks, Lynette; Datta, Alexandre N; Filges, Isabel; Gürtler, Nicolas; Roelofsen, Jeroen; van Kuilenburg, André B P; Kemper, Claudia; West, Erin E; Szinnai, Gabor; Huemer, Martina (2021). Co-therapy with S-adenosylmethionine and nicotinamide riboside improves t-cell survival and function in Arts Syndrome (PRPS1 deficiency). Molecular Genetics and Metabolism Reports, 26:100709.

Markolin, Philipp; Davidson, Natalie; Hirt, Christian K; Chabbert, Christophe D; Zamboni, Nicola; Schwank, Gerald; Krek, Wilhelm; Rätsch, Gunnar (2021). Identification of HIF-dependent alternative splicing in gastrointestinal cancers and characterization of a long, coding isoform of SLC35A3. Genomics, 113(2):515-529.

Frey, Pascal M; Baer, Julian; Bergada-Pijuan, Judith; Lawless, Conor; Bühler, Philipp K; Kouyos, Roger D; Lemon, Katherine P; Zinkernagel, Annelies S; Brugger, Silvio D (2021). Quantifying Variation in Bacterial Reproductive Fitness: a High-Throughput Method. mSystems, 6(1):e01323-20.

Johannsen, Emma B; Baughn, Linda B; Sharma, Neeraj; Zjacic, Nicolina; Pirooznia, Mehdi; Elhaik, Eran (2021). The Genetics of Sudden Infant Death Syndrome-Towards a Gene Reference Resource. Genes, 12:216.

Qu, Zhishuai; Forster, Dominik; Bruni, Estelle P; Frantal, Daniela; Kammerlander, Barbara; Nachbaur, Laura; Pitsch, Gianna; Posch, Thomas; Pröschold, Thomas; Teubner, Katrin; Sonntag, Bettina; Stoeck, Thorsten (2021). Aquatic food webs in deep temperate lakes: Key species establish through their autecological versatility. Molecular Ecology, 30(4):1053-1071.

Ferreira, Carlos R; Blau, Nenad (2021). Clinical and biochemical footprints of inherited metabolic diseases. IV. Metabolic cardiovascular disease. Molecular Genetics and Metabolism, 132(2):112-118.

Guberina, Maja; Sak, Ali; Pöttgen, Christoph; Tinhofer-Keilholz, Ingeborg; Budach, Volker; Balermpas, Panagiotis; Von der Grün, Jens; Rödel, Claus Michael; Gkika, Eleni; Grosu, Anca-Ligia; Abdollahi, Amir; Debus, Jürgen; Belka, Claus; Pigorsch, Steffi; Combs, Stephani E; Mönnich, David; Zips, Daniel; De-Colle, Chiara; Welz, Stefan; Linge, Annett; Lohaus, Fabian; Baretton, Gustavo; Gauler, Thomas; Baumann, Michael; Krause, Mechthild; Schuler, Martin; Bankfalvi, Agnes; Höing, Benedikt; Lang, Stephan; Stuschke, Martin (2021). ERCC2 gene single-nucleotide polymorphism as a prognostic factor for locally advanced head and neck carcinomas after definitive cisplatin-based radiochemotherapy. Pharmacogenomics Journal, 21(1):37-46.

Pretz, Dominik; Le Foll, Christelle; Rizwan, Mohammed Z; Lutz, Thomas A; Tups, Alexander (2021). Hyperleptinemia as a contributing factor for the impairment of glucose intolerance in obesity. FASEB Journal, 35(2):e21216.

Daryadel, Arezoo; Ruiz, Pedro A; Gehring, Nicole; Stojanovic, Dragana; Ugrica, Marko; Bettoni, Carla; Sabrautzki, Sibylle; Pastor-Arroyo, Eva-Maria; Frey-Wagner, Isabelle; Lorenz-Depiereux, Bettina; Strom, Tim M; de Angelis, Martin Hrabě; Rogler, Gerhard; Wagner, Carsten A; Rubio-Aliaga, Isabel (2021). Systemic Jak1 activation provokes hepatic inflammation and imbalanced FGF23 production and cleavage. FASEB Journal, 35(2):e21302.

Tepekule, Burcu; Hauser, Anthony; Kachalov, Viacheslav N; Andresen, Sara; Scheier, Thomas; Schreiber, Peter W; Günthard, Huldrych F; Kouyos, Roger D (2021). Assessing the potential impact of transmission during prolonged viral shedding on the effect of lockdown relaxation on COVID-19. PLoS Computational Biology, 17:e1008609.

Kachalov, Viacheslav N; Nguyen, Huyen; Balakrishna, Suraj; Salazar-Vizcaya, Luisa; Sommerstein, Rami; Kuster, Stefan P; Hauser, Anthony; Abel Zur Wiesch, Pia; Klein, Eili; Kouyos, Roger D (2021). Identifying the drivers of multidrug-resistant Klebsiella pneumoniae at a European level. PLoS Computational Biology, 17:e1008446.

Tusup, Marina; Cheng, Phil F; Picardi, Ernesto; Raziunaite, Austeja; Dummer, Reinhard; Levesque, Mitchell P; French, Lars E; Guenova, Emmanuella; Kundig, Thomas M; Pascolo, Steve (2021). Evaluation of the Interplay between the ADAR Editome and Immunotherapy in Melanoma. Non-Coding RNA, 7:5.

Mallona, Izaskun; Ilie, Ioana Mariuca; Karemaker, Ino Dominiek; Butz, Stefan; Manzo, Massimiliano; Caflisch, Amedeo; Baubec, Tuncay (2021). Flanking sequence preference modulates de novo DNA methylation in the mouse genome. Nucleic Acids Research, 49(1):145-157.

Hussung, Saskia; Akhoundova, Dilara; Hipp, Julian; Follo, Marie; Klar, Rhena F U; Philipp, Ulrike; Scherer, Florian; von Bubnoff, Nikolas; Duyster, Justus; Boerries, Melanie; Wittel, Uwe; Fritsch, Ralph M (2021). Longitudinal analysis of cell-free mutated KRAS and CA 19-9 predicts survival following curative resection of pancreatic cancer. BMC Cancer, 21:49.

Wang, Yuluan; Soneson, Charlotte; Malinowska, Anna L; Laski, Artur; Ghosh, Souvik; Kanitz, Alexander; Gebert, Luca F R; Robinson, Mark D; Hall, Jonathan (2021). MiR-CLIP reveals iso-miR selective regulation in the miR-124 targetome. Nucleic Acids Research, 49(1):25-37.

Kubacki, Jakub; Hardmeier, Isabelle; Qi, Weihong; Flacio, Eleonora; Tonolla, Mauro; Fraefel, Cornel (2021). Complete genome sequence of a Rhabdovirus strain from culex mosquitos collected in Southern Switzerland. Microbiology Resource Announcements, 10(1):e01234-20.

Keles, Esin; Malama, Eleni; Bozukova, Siyka; Siuda, Mathias; Wyck, Sarah; Witschi, Ulrich; Bauersachs, Stefan; Bollwein, Heinrich (2021). The micro-RNA content of unsorted cryopreserved bovine sperm and its relation to the fertility of sperm after sex-sorting. BMC Genomics, 22(1):30.

Haug, Patricia; Koller, Samuel; Maggi, Jordi; Lang, Elena; Feil, Silke; Wlodarczyk, Agnès; Bähr, Luzy; Steindl, Katharina; Rohrbach, Marianne; Gerth-Kahlert, Christina; Berger, Wolfgang (2021). Whole Exome Sequencing in Coloboma/Microphthalmia: Identification of Novel and Recurrent Variants in Seven Genes. Genes, 12(1):E65.

Ferreira, Carlos R; Rahman, Shamima; Keller, Markus; Zschocke, Johannes; et al; Baumgartner, Matthias R (2021). An International Classification of Inherited Metabolic Disorders (ICIMD). Journal of Inherited Metabolic Disease, 44:164-177.

Sticco, Matthew J; Peña Palomino, Perla A; Lukacsovich, David; Thompson, Brianna L; Földy, Csaba; Ressl, Susanne; Martinelli, David C (2021). C1QL3 promotes cell‐cell adhesion by mediating complex formation between ADGRB3/BAI3 and neuronal pentraxins. FASEB Journal, 35(1):e21194.

Brown, Steven A; Sinues, Pablo (2021). Circadian Metabolomics from Breath. In: Brown, Steven A. Circadian Clocks : Methods and Protocols. New York: Springer, 149-156.

Zabulica, Mihaela; Srinivasan, Raghuraman C; Akcakaya, Pinar; Allegri, Gabriella; Bestas, Burcu; Firth, Mike; Hammarstedt, Christina; Jakobsson, Tomas; Jakobsson, Towe; Ellis, Ewa; Jorns, Carl; Makris, Georgios; Scherer, Tanja; Rimann, Nicole; van Zuydam, Natalie R; Gramignoli, Roberto; Forslöw, Anna; Engberg, Susanna; Maresca, Marcello; Rooyackers, Olav; Thöny, Beat; Häberle, Johannes; Rosen, Barry; Strom, Stephen C (2021). Correction of a urea cycle defect after ex vivo gene editing of human hepatocytes. Molecular Therapy, 29(5):1903-1917.

Hörster, Friederike; Tuncel, Ali Tunç; Gleich, Florian; Plessl, Tanja; Froese, Sean D; Garbade, Sven F; Kölker, Stefan; Baumgartner, Matthias R; Additional Contributors from E-IMD (2021). Delineating the clinical spectrum of isolated methylmalonic acidurias: cblA and mut. Journal of Inherited Metabolic Disease, 44(1):193-214.

Tayyrov, Annageldi; Schnetzler, Michèle; Gillis-Germitsch, Nina; Schnyder, Manuela (2021). Genetic diversity of the cardiopulmonary canid nematode Angiostrongylus vasorum within and between rural and urban fox populations. Infection, Genetics and Evolution, 87:104618.

Carraro, Luca; Stauffer, Julian B; Altermatt, Florian (2021). How to design optimal eDNA sampling strategies for biomonitoring in river networks. Environmental DNA, 3(1):157-172.

Thieme, Michael; Roulin, Anne C (2021). Identification of Active Transposable Elements in Plants: The Mobilome-Seq Approach. In: Cho, Jungnam. Plant Transposable Elements. New York: Springer, 95-102.

Hopp, Ann-Katrin; Hottiger, Michael O (2021). Investigation of Mitochondrial Via Immunofluorescence. In: Weissig, V; Edeas, M. Mitochondiral Medicine. New York: Springer, 165-171.

Du, Ngoc-Hien; Brown, Steven A (2021). Measuring Circadian Rhythms in Human Cells. In: Brown, Steven A. Circadian Clocks : Methods and Protocols. New York: Springer, 53-67.

Dimitrov, Bianca; Molema, Femke; Williams, Monique; Schmiesing, Jessica; Mühlhausen, Chris; Baumgartner, Matthias R; Schumann, Anke; Kölker, Stefan (2021). Organic acidurias: Major gaps, new challenges, and a yet unfulfilled promise. Journal of Inherited Metabolic Disease, 44(1):9-21.

Gysin, Tina; Kowalewski, Mariusz P (2021). The involvement of hypoxia-inducible factor 1α (HIF1α)-stabilising factors in steroidogenic acute regulatory (STAR) protein-dependent steroidogenesis in murine KK1 granulosa cells in vitro. Reproduction, Fertility and Development, 33(18):865-880.

Salzmann, Andrea Patrizia; Bamberg, Malte; Courts, Cornelius; Dorum, Guro; Gosch, Annica; Hadrys, Thorsten; Hadzic, Gavrilo; Neis, Maximilian; Schneider, Peter M; Sijen, Titia; van den Berge, Margreet; Wiegand, Peter; Haas, Cordula (2021). mRNA profiling of mock casework samples: Results of a FoRNAP collaborative exercise. Forensic Science International. Genetics, 50:102409.

Demange, Perline A; Malanchini, Margherita; Mallard, Travis T; Biroli, Pietro; Cox, Simon R; Grotzinger, Andrew D; Tucker-Drob, Elliot M; Abdellaoui, Abdel; Arseneault, Louise; van Bergen, Elsje; Boomsma, Dorret I; Caspi, Avshalom; Corcoran, David L; Domingue, Benjamin W; Harris, Kathleen Mullan; Ip, Hill F; Mitchell, Colter; Moffitt, Terrie E; Poulton, Richie; Prinz, Joseph A; Sugden, Karen; Wertz, Jasmin; Williams, Benjamin S; de Zeeuw, Eveline L; Belsky, Daniel W; Harden, K Paige; Nivard, Michel G (2021). Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction. Nature Genetics, 53(1):35-44.

Mun, YeVin; Nombela-Arrieta, César (2021). 3D Microscopy of Murine Bone Marrow Hematopoietic Tissues. Methods in Molecular Biology, 2308:127-138.

Gnoli, Maria; Brizola, Evelise; Tremosini, Morena; Pedrini, Elena; Maioli, Margherita; Mosca, Massimiliano; Bassotti, Alessandra; Castronovo, Paola; Giunta, Cecilia; Sangiorgi, Luca (2021). COL1-Related Disorders: Case Report and Review of Overlapping Syndromes. Frontiers in Genetics, 12:640558.

Lichtensteiger, Walter; Bassetti-Gaille, Catherine; Rehrauer, Hubert; Georgijevic, Jelena Kühn; Tresguerres, Jesus A F; Schlumpf, Margret (2021). Converging Effects of Three Different Endocrine Disrupters on Sox and Pou Gene Expression in Developing Rat Hippocampus: Possible Role of microRNA in Sex Differences. Frontiers in Genetics, 12:718796.

Stritt, Christoph; Roulin, Anne C (2021). Detecting Signatures of TE Polymorphisms in Short-Read Sequencing Data. In: Cho, Jungnam. Plant transposable elements. New York: Springer, 177-187.

Vasiljevic, Nina; Lim, Marisa; Humble, Emily; Seah, Adeline; Kratzer, Adelgunde; Morf, Nadja V; Prost, Stefan; Ogden, Rob (2021). Developmental validation of Oxford Nanopore Technology MinION sequence data and the NGSpeciesID bioinformatic pipeline for forensic genetic species identification. Forensic Science International. Genetics, 53:102493.

Cervantes-Gracia, Karla; Chahwan, Richard; Husi, Holger (2021). Integrative Analysis of Incongruous Cancer Genomics and Proteomics Datasets. Methods in Molecular Biology, 2361:291-305.

Schumann, Anke; Belche, Véronique; Schaller, Kristin; Grünert, Sarah C; Kaech, Andres; Baumgartner, Matthias R; Kölker, Stefan; Hannibal, Luciana; Spiekerkoetter, Ute (2021). Mitochondrial damage in renal epithelial cells is potentiated by protein exposure in propionic aciduria. Journal of Inherited Metabolic Disease, 44(6):1330-1342.

Lim, Pei Jin; Marfurt, Severin; Lindert, Uschi; Opitz, Lennart; Ndarugendamwo, Timothée; Srikanthan, Pakeerathan; Poms, Martin; Hersberger, Martin; Langhans, Claus-Dieter; Haas, Dorothea; Rohrbach, Marianne; Giunta, Cecilia (2021). Omics Profiling of S2P Mutant Fibroblasts as a Mean to Unravel the Pathomechanism and Molecular Signatures of X-Linked MBTPS2 Osteogenesis Imperfecta. Frontiers in Genetics, 12:662751.

2020

Amaral, Ana R; Chanfana, Cátia; Smith, Brian D; Mansur, Rubaiyat; Collins, Tim; Baldwin, Robert; Minton, Gianna; Parra, Guido J; Krützen, Michael; Jefferson, Thomas A; Karczmarski, Leszek; Guissamulo, Almeida; Brownell, Robert L; Rosenbaum, Howard C (2020). Genomics of Population Differentiation in Humpback Dolphins, Sousa spp. in the Indo-Pacific Ocean. Journal of Heredity, 111(7):652-660.

Marin-Gonzalez, Alberto; Aicart-Ramos, Clara; Marin-Baquero, Mikel; Martín-González, Alejandro; Suomalainen, Maarit; Kannan, Abhilash; Vilhena, J G; Greber, Urs F; Moreno-Herrero, Fernando; Pérez, Rubén (2020). Double-stranded RNA bending by AU-tract sequences. Nucleic Acids Research, 48(22):12917-12928.

Charmpi, Konstantina; Guo, Tiannan; Zhong, Qing; Wagner, Ulrich; Sun, Rui; Toussaint, Nora C; Fritz, Christine E; Yuan, Chunhui; Chen, Hao; Rupp, Niels J; Christiansen, Ailsa; Rutishauser, Dorothea; Rüschoff, Jan H; Fankhauser, Christian; Saba, Karim; Poyet, Cedric; Hermanns, Thomas; Oehl, Kathrin; Moore, Ariane L; Beisel, Christian; Calzone, Laurence; Martignetti, Loredana; Zhang, Qiushi; Zhu, Yi; Martínez, María Rodríguez; Manica, Matteo; Haffner, Michael C; Aebersold, Ruedi; Wild, Peter J; Beyer, Andreas (2020). Convergent network effects along the axis of gene expression during prostate cancer progression. Genome Biology, 21:302.

O'Reilly, Daniel; Crushell, Ellen; Hughes, Joanne; et al; Rüfenacht, Véronique; Häberle, Johannes (2020). Maple syrup urine disease: Clinical outcomes, metabolic control, and genotypes in a screened population after four decades of newborn bloodspot screening in the Republic of Ireland. Journal of Inherited Metabolic Disease, 44(3):639-655.

Huemer, Markus; Mairpady Shambat, Srikanth; Brugger, Silvio D; Zinkernagel, Annelies S (2020). Antibiotic resistance and persistence—Implications for human health and treatment perspectives. EMBO Reports, 21(12):0.

Tiberi, Simone; Robinson, Mark D (2020). BANDITS: Bayesian differential splicing accounting for sample-to-sample variability and mapping uncertainty. Genome Biology, 21:69.

Kartal, Önder; Schmid, Marc W; Grossniklaus, Ueli (2020). Cell type-specific genome scans of DNA methylation divergence indicate an important role for transposable elements. Genome Biology, 21:172.

Antoine, Daniel James; Williams, Dominic P; Kipar, Anja; Laverty, Hugh; Park, B Kevin (2020). Expression of Concern to: Diet restriction inhibits apoptosis and HMGB1 oxidation and promotes inflammatory cell recruitment during acetaminophen hepatoxicity. Molecular Medicine, 26:13.

Koenen, Erik J M; Kidner, Catherine; de Souza, Élvia R; Simon, Marcelo F; Iganci, João R; Nicholls, James A; Brown, Gillian K; de Queiroz, Luciano P; Luckow, Melissa; Lewis, Gwilym P; Pennington, R Toby; Hughes, Colin E (2020). Hybrid capture of 964 nuclear genes resolves evolutionary relationships in the mimosoid legumes and reveals the polytomous origins of a large pantropical radiation. American Journal of Botany, 107(12):1710-1735.

Fowler, Anna; Galson, Jacob D; Trück, Johannes; Kelly, Dominic F; Lunter, Gerton (2020). Inferring B cell specificity for vaccines using a Bayesian mixture model. BMC Genomics, 21:176.

Martens, Helge; Hennies, Imke; Getwan, Maike; Christians, Anne; Weiss, Anna-Carina; Brand, Frank; Gjerstad, Ann Christin; Christians, Arne; Gucev, Zoran; Geffers, Robert; Seeman, Tomáš; Kispert, Andreas; Tasic, Velibor; Bjerre, Anna; Lienkamp, Soeren Sten; Haffner, Dieter; Weber, Ruthild G (2020). Rare heterozygous GDF6 variants in patients with renal anomalies. European Journal of Human Genetics, 28(12):1681-1693.

Holderegger, Rolf; Schmidt, Benedikt R; Grünig, Christoph; Meier, Robert; Csencsics, Daniela; Gassner, Martin; Rellstab, Christian; Stapfer, André (2020). Ready-to-use workflows for the implementation of genetic tools in conservation management. Conservation Genetics Resources, 12(4):691-700.

Antoine, Daniel James; Williams, Dominic P; Kipar, Anja; Laverty, Hugh; Park, B Kevin (2020). Retraction Note: Diet restriction inhibits apoptosis and HMGB1 oxidation and promotes inflammatory cell recruitment during acetaminophen hepatotoxicity. Molecular Medicine, 26(1):130.

Thomas, Christoph; Aller, Stephen G; Beis, Konstantinos; Carpenter, Elisabeth P; et al; Martinoia, Enrico (2020). Structural and functional diversity calls for a new classification of ABC transporters. FEBS letters, 594(23):3767-3775.

Primo, Pasquale; Meccariello, Angela; Inghilterra, Maria Grazia; Gravina, Andrea; Del Corsano, Giuseppe; Volpe, Gennaro; Sollazzo, Germano; Aceto, Serena; Robinson, Mark D; Salvemini, Marco; Saccone, Giuseppe (2020). Targeting the autosomal Ceratitis capitata transformer gene using Cas9 or dCas9 to masculinize XX individuals without inducing mutations. BMC Genetics, 21(Suppl 2):150.

Feller, Anita; Matthes, Katarina L; Bordoni, Andrea; Bouchardy, Christine; Bulliard, Jean-Luc; Herrmann, Christian; Konzelmann, Isabelle; Maspoli, Manuela; Mousavi, Mohsen; Rohrmann, Sabine; Staehelin, Katharina; Arndt, Volker (2020). The relative risk of second primary cancers in Switzerland: a population-based retrospective cohort study. BMC Cancer, 20:51.

Hecht, Markus; Hahn, Dennis; Wolber, Philipp; Hautmann, Matthias G; Reichert, Dietmar; Weniger, Steffi; Belka, Claus; Bergmann, Tobias; Göhler, Thomas; Welslau, Manfred; Große-Thie, Christina; Guntinas-Lichius, Orlando; von der Grün, Jens; Balermpas, Panagiotis; Orlowski, Katrin; Messinger, Diethelm; Stenzel, Karsten G; Fietkau, Rainer (2020). Treatment response lowers tumor symptom burden in recurrent and/or metastatic head and neck cancer. BMC Cancer, 20(933):1-11.

Lopes, Patricia C; König, Barbara (2020). Wild mice with different social network sizes vary in brain gene expression. BMC Genomics, 21:506.

Germain, Pierre-Luc; Sonrel, Anthony; Robinson, Mark D (2020). pipeComp, a general framework for the evaluation of computational pipelines, reveals performant single cell RNA-seq preprocessing tools. Genome Biology, 21(1):227.

Caduff, Nicole; McHugh, Donal; Murer, Anita; Rämer, Patrick; Raykova, Ana; Landtwing, Vanessa; Rieble, Lisa; Keller, Christian W; Prummer, Michael; Hoffmann, Laurent; Lam, Janice K P; Chiang, Alan K S; Raulf, Friedrich; Azzi, Tarik; Berger, Christoph; Rubic-Schneider, Tina; Traggiai, Elisabetta; Lünemann, Jan D; Kammüller, Michael; Münz, Christian (2020). Correction: Immunosuppressive FK506 treatment leads to more frequent EBV-associated lymphoproliferative disease in humanized mice. PLoS Pathogens, 16(12):e1009167.

Giangiobbe, Sara; Caraffi, Stefano Giuseppe; Ivanovski, Ivan; Maini, Ilenia; Pollazzon, Marzia; et al (2020). Expanding the phenotype of Wiedemann-Steiner syndrome: Craniovertebral junction anomalies. American Journal of Medical Genetics. Part A, 182(12):2877-2886.

Roifman, Maian; Niles, Kirsten M; MacNeil, Lauren; Blaser, Susan; Noor, Abdul; Godoy, Ruth; van Mieghem, Tim; Ryan, Greg; Seaward, Gareth; Sondheimer, Neal; Mercimek-Andrews, Saadet; Schulze, Andreas; Hewson, Stacy; Ovadia, Adi; Chitayat, David; Morgen, Eric K; Hojilla, Carlo; Kolomietz, Elena; Watkins, Nicholas; Häberle, Johannes; Shannon, Patrick (2020). Homozygous GLUL deletion is embryonically viable and leads to glutamine synthetase deficiency. Clinical Genetics, 98(6):613-619.

San Roman, Magdalena; Wagner, Andreas (2020). Acetate and glycerol are not uniquely suited for the evolution of cross-feeding in E. coli. PLoS Computational Biology, 16(11):e1008433.

Bordignon, Enrica; Seeger, Markus A; Galazzo, Laura; Meier, Gianmarco (2020). From in vitro towards in situ: structure-based investigation of ABC exporters by electron paramagnetic resonance spectroscopy. FEBS letters, 594:3839-3856.

Wambui, Joseph; Cernela, Nicole; Stevens, Marc J A; Ghielmetti, Giovanni; Stephan, Roger (2020). Draft genome sequences of two clostridium algidicarnis strains isolated from meat juice samples of chilled vacuum-packed lamb meat. Microbiology Resource Announcements, 9(45):e00983-20.

Wyler, Michele; Stritt, Christoph; Walser, Jean-Claude; Baroux, Célia; Roulin, Anne C (2020). Impact of transposable elements on methylation and gene expression across natural accessions of Brachypodium distachyon. Genome Biology and Evolution, 12(11):1994-2001.

Sokolowska, Milena (2020). Outsmarting SARS-CoV-2 by empowering a decoy ACE2. Signal Transduction and Targeted Therapy, 5(1):260.

Gesemann, Matthias; Neuhauss, Stephan C F (2020). Selective Gene Loss of Visual and Olfactory Guanylyl Cyclase Genes Following the Two Rounds of Vertebrate-Specific Whole-Genome Duplications. Genome Biology and Evolution, 12(11):2153-2167.

Rellstab, Christian; Zoller, Stefan; Sailer, Christian; Tedder, Andrew; Gugerli, Felix; Shimizu, Kentaro K; Holderegger, Rolf; Widmer, Alex; Fischer, Martin C (2020). Genomic signatures of convergent adaptation to Alpine environments in three Brassicaceae species. Molecular Ecology, 29(22):4350-4365.

Picart-Picolo, Ariadna; Grob, Stefan; Picault, Nathalie; Franek, Michal; Llauro, Christel; Halter, Thierry; Maier, Tom R; Jobet, Edouard; Descombin, Julie; Zhang, Panpan; Paramasivan, Vijayapalani; Baum, Thomas J; Navarro, Lionel; Dvořáčková, Martina; Mirouze, Marie; Pontvianne, Frédéric (2020). Large tandem duplications affect gene expression, 3D organization, and plant–pathogen response. Genome Research, 30(11):1583-1592.

Epting, Daniel; Senaratne, Lokuliyange D S; Ott, Elisabeth; Holmgren, Asbjørn; Sumathipala, Dulika; et al; Lienkamp, Soeren Sten (2020). Loss of CBY1 results in a ciliopathy characterized by features of Joubert syndrome. Human Mutation, 41(12):2179-2194.

Boccia, Lavinia; Le Foll, Christelle; Lutz, Thomas A (2020). Noradrenaline signaling in the LPBN mediates amylin's and salmon calcitonin's hypophagic effect in male rats. FASEB Journal, 34(11):15448-15461.

Koch, Eva L; Sbilordo, Sonja H; Guillaume, Frédéric (2020). Genetic variance in fitness and its cross-sex covariance predict adaptation during experimental evolution. Evolution, 74(12):2725-2740.

Wyvekens, Nicolas; Valtcheva, Nadejda; Mischo, Axel; Helmchen, Birgit; Hermanns, Thomas; Choschzick, Matthias; Hötker, Andreas M; Rauch, Anita; Mühleisen, Beda; Akhoundova, Dilara; Weber, Achim; Moch, Holger; Rupp, Niels J (2020). Novel morphological and genetic features of fumarate hydratase deficient renal cell carcinoma in HLRCC syndrome patients with a tailored therapeutic approach. Genes, Chromosomes and Cancer, 59(11):611-619.

Schmutzer, Michael; Wagner, Andreas (2020). Gene expression noise can promote the fixation of beneficial mutations in fluctuating environments. PLoS Computational Biology, 16(10):e1007727.

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Kakui, Hiroyuki; Yamazaki, Misako; Hamaya, Naoto-Benjamin; Shimizu, Kentaro K (2020). Pollen Grain Counting Using a Cell Counter. In: Geitmann, Anja. Methods in Molecular Biology: Pollen and Pollen Tube Biology. Berlin: Springer, 1-11.

Haudry, A; Laurent, S; Kapun, Martin (2020). Population Genomics on the Fly: Recent Advances in Drosophila. In: Dutheil, Julien Y. Statistical Population Genomics. Basel: Springer, 357-396.

Gupta, Shivani; Santoro, Raffaella (2020). Regulation and Roles of the Nucleolus in Embryonic Stem Cells: From Ribosome Biogenesis to Genome Organization. Stem Cell Reports, 15(6):1206-1219.

Borrelli, Costanza; Moor, Andreas E (2020). Single-Molecule RNA FISH in Whole-Mount Organoids. In: Ordóñez-Morán, Paloma. Intestinal Stem Cells. Nottingham, UK: Springer, 237-247.

Hillert, Alicia; Anikster, Yair; Belanger-Quintana, Amaya; Burlina, Alberto; et al; Rohrbach, Marianne; Thöny, Beat; Blau, Nenad (2020). The Genetic Landscape and Epidemiology of Phenylketonuria. American Journal of Human Genetics, 107(2):234-250.

Najafi, Arash; Caspar, Sylvan M; Meienberg, Janine; Rohrbach, Marianne; Steinmann, Beat; Matyas, Gabor (2020). Variant filtering, digenic variants, and other challenges in clinical sequencing: a lesson from fibrillinopathies. Clinical Genetics, 97(2):235-245.

2019

Nur, Selim; Sparber, Florian; Lemberg, Christina; Guiducci, Eva; Schweizer, Tiziano A; Zwicky, Pascale; Becher, Burkhard; LeibundGut-Landmann, Salomé (2019). IL-23 supports host defense against systemic Candida albicans infection by ensuring myeloid cell survival. PLoS Pathogens, 15(12):e1008115.

Galindo‐Trigo, Sergio; Blanco‐Touriñán, Noel; DeFalco, Thomas A; Wells, Eloise S; Gray, Julie E; Zipfel, Cyril; Smith, Lisa M (2019). Cr RLK 1L receptor‐like kinases HERK 1 and ANJEA are female determinants of pollen tube reception. EMBO Reports:e48466.

Noreen, Faiza; Küng, Taya; Tornillo, Luigi; Parker, Hannah; Silva, Miguel; Weis, Stefan; Marra, Giancarlo; Rad, Roland; Truninger, Kaspar; Schär, Primo (2019). DNA methylation instability by BRAF-mediated TET silencing and lifestyle-exposure divides colon cancer pathways. Clinical Epigenetics, 11:196.

Torrecilha, R B P; Milanesi, M; Gallana, M; Falbo, A K; Reichler, Iris M; Hug, P; Jagannathan, V; Trigo, B B; Paulan, S C; Bruno, D B; Garcia, S D; Scaramele, N F; Lopes, F L; Dolf, G; Leeb, T; Sölkner, J; Garcia, J F; Pienkowska‐Schelling, A; Schelling, Claude; Utsunomiya, Y T (2019). Association of missense variants in GDF9 with litter size in Entlebucher Mountain dogs. Animal Genetics, 51(1):78-86.

Walter, Jasmin; Huwiler, Fabian; Fortes, Claudia; Grossmann, Jonas; Roschitzki, Bernd; Hu, Junmin; Naegeli, Hanspeter; Laczko, Endre; Bleul, Ulrich (2019). Analysis of the equine “cumulome” reveals major metabolic aberrations after maturation in vitro. BMC Genomics, 20(1):588.

Hanson, Erin; Ingold, Sabrina; Dorum, Guro; Haas, Cordula; Lagace, Rob; Ballantyne, Jack (2019). Assigning forensic body fluids to DNA donors in mixed samples by targeted RNA/DNA deep seqeuncing of coding region SNPs using ion torrent technology. Forensic Science International: Genetics Supplement Series, 7(1):23-24.

Codilupi, Tamara; Taube, Doreen; Naegeli, Hanspeter (2019). CRL4 ubiquitin ligase stimulates Fanconi anemia pathway-induced single-stranded DNA-RPA signaling. BMC Cancer, 19(1):1042.

Begemann, Anaïs; Acuña, Mario A; Zweier, Markus; Vincent, Marie; Steindl, Katharina; Bachmann-Gagescu, Ruxandra; Hackenberg, Annette; Abela, Lucia; Plecko, Barbara; Kroell-Seger, Judith; Baumer, Alessandra; Yamakawa, Kazuhiro; Inoue, Yushi; Asadollahi, Reza; Sticht, Heinrich; Zeilhofer, Hanns Ulrich; Rauch, Anita (2019). Further corroboration of distinct functional features in SCN2A variants causing intellectual disability or epileptic phenotypes. Molecular Medicine, 25:6.

Jain, Rashmi; Jenkins, Jerry; Shu, Shengqiang; Chern, Mawsheng; Martin, Joel A; Copetti, Dario; Duong, Phat Q; Pham, Nikki T; Kudrna, David A; Talag, Jayson; Schackwitz, Wendy S; Lipzen, Anna M; Dilworth, David; Bauer, Diane; Grimwood, Jane; Nelson, Catherine R; Xing, Feng; Xie, Weibo; Barry, Kerrie W; Wing, Rod A; Schmutz, Jeremy; Li, Guotian; Ronald, Pamela C (2019). Genome sequence of the model rice variety KitaakeX. BMC Genomics, 20(1):905.

Füeg, F; Santos, S; Haslinger, C; Stoiber, B; Schäffer, L; Grünblatt, E; Zimmermann, R; Simões-Wüst, Ana Paula (2019). Influence of oxytocin receptor single nucleotide sequence variants on contractility of human myometrium: an in vitro functional study. BMC Medical Genetics, 20(1):178.

Grob, Stefan; Grossniklaus, Ueli (2019). Invasive DNA elements modify the nuclear architecture of their insertion site by KNOT-linked silencing in Arabidopsis thaliana. Genome Biology, 20(1):120.

Rutowicz, Kinga; Lirski, Maciej; Mermaz, Benoît; Teano, Gianluca; Schubert, Jasmin; Mestiri, Imen; Kroteń, Magdalena A; Fabrice, Tohnyui Ndinyanka; Fritz, Simon; Grob, Stefan; Ringli, Christoph; Cherkezyan, Lusik; Barneche, Fredy; Jerzmanowski, Andrzej; Baroux, Célia (2019). Linker histones are fine-scale chromatin architects modulating developmental decisions in Arabidopsis. Genome Biology, 20:157.

Bucher, K; Malama, E; Siuda, Mathias; Janett, Fredi; Bollwein, Heiner (2019). Multicolor flow cytometric analysis of cryopreserved bovine sperm: a tool for the evaluation of bull fertility. Journal of Dairy Science, 102(12):11652-11669.

Fischer, F; Helmer, S; Rogge, A; Arraras, J I; Buchholz, A; Hannawa, A; Horneber, M; Kiss, A; Rose, M; Söllner, W; Stein, B; Weis, J; Schofield, P; Witt, C M (2019). Outcomes and outcome measures used in evaluation of communication training in oncology – a systematic literature review, an expert workshop, and recommendations for future research. BMC Cancer, 19:808.

Monat, Cécile; Padmarasu, Sudharsan; Lux, Thomas; Wicker, Thomas; Gundlach, Heidrun; Himmelbach, Axel; Ens, Jennifer; Li, Chengdao; Muehlbauer, Gary J; Schulman, Alan H; Waugh, Robbie; Braumann, Ilka; Pozniak, Curtis; Scholz, Uwe; Mayer, Klaus F X; Spannagl, Manuel; Stein, Nils; Mascher, Martin (2019). TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools. Genome Biology, 20:284.

Barbieri, Chiara; Barquera, Rodrigo; Arias, Leonardo; Sandoval, José R; Acosta, Oscar; Zurita, Camilo; Aguilar-Campos, Abraham; Tito-Álvarez, Ana M; Serrano-Osuna, Ricardo; Gray, Russell D; Heggarty, Paul; Shimizu, Kentaro K; Fujita, Ricardo; Stoneking, Mark; Pugach, Irina; Fehren-Schmitz, Lars (2019). The current genomic landscape of western South America: Andes, Amazonia and Pacific Coast. Molecular Biology and Evolution, 36(12):2698-2713.

Klement, Rainer J; Abbasi-Senger, N; Adebahr, S; Alheid, H; Allgaeuer, M; Becker, G; Blanck, O; Boda-Heggemann, J; Brunner, T; Duma, M; Eble, M J; Ernst, I; Gerum, S; Habermehl, D; Hass, P; Henkenberens, C; Hildebrandt, G; Imhoff, D; Kahl, H; Klass, N D; Krempien, R; Lewitzki, V; Lohaus, F; Ostheimer, C; Papachristofilou, A; Petersen, C; Rieber, J; Schneider, T; Schrade, E; Semrau, R; Wachter, S; Wittig, A; Guckenberger, Matthias; Andratschke, N (2019). The impact of local control on overall survival after stereotactic body radiotherapy for liver and lung metastases from colorectal cancer: a combined analysis of 388 patients with 500 metastases. BMC Cancer, 19(1):173.

Armaleo, Daniele; Müller, Olaf; Lutzoni, François; et al; Szövényi, Péter (2019). The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata. BMC Genomics, 20:605.

Hanson, Erin; Dorum, Guro; Salzmann, Andrea; Fliss, Barbara; Hess, Sabine; Haas, Cordula; Ballantyne, Jack (2019). mRNA MPS tissue identification assay to aid in the investigation of traumatic injuries. Forensic Science International: Genetics Supplement Series, 7(1):25-26.

Dumeau, Charles-Etienne; Monfort, Asun; Kissling, Lucas; Swarts, Daan C; Jinek, Martin; Wutz, Anton (2019). Introducing gene deletions by mouse zygote electroporation of Cas12a/Cpf1. Transgenic research, 28(5-6):525-535.

Denoth-Lippuner, Annina; Jessberger, Sebastian (2019). Mechanisms of cellular rejuvenation. FEBS letters, 593(23):3381-3392.

Zeng, Shuqin; Ulbrich, Susanne E; Bauersachs, Stefan (2019). Spatial organization of endometrial gene expression at the onset of embryo attachment in pigs. BMC Genomics, 20(1):895.

Grosskurth, Elmar D; Bach, Dominik R; Economides, Marcos; Huys, Quentin J M; Holper, Lisa (2019). No substantial change in the balance between model-free and model-based control via training on the two-step task. PLoS Computational Biology, 15(11):e1007443.

Foria, Serena; Copetti, Dario; Eisenmann, Birgit; Magris, Gabriele; Vidotto, Michele; Scalabrin, Simone; Testolin, Raffaele; Cipriani, Guido; Wiedemann‐Merdinoglu, Sabine; Bogs, Jochen; Di Gaspero, Gabriele; Morgante, Michele (2019). Gene duplication and transposition of mobile elements drive evolution of the Rpv3 resistance locus in grapevine. The Plant Journal, 101(3):529-542.

Varadharajan, Srinidhi; Rastas, Pasi; Löytynoja, Ari; Matschiner, Michael; Calboli, Federico C F; Guo, Baocheng; Nederbragt, Alexander J; Jakobsen, Kjetill S; Merilä, Juha (2019). A high-quality assembly of the nine-spined stickleback (Pungitius pungitius) genome. Genome Biology and Evolution, 11(11):3291-3308.

Srinivasan, Raghuraman C; Zabulica, Mihaela; Hammarstedt, Christina; Wu, Tingting; Gramignoli, Roberto; Kannisto, Kristina; Ellis, Ewa; Karadagi, Ahmad; Fingerhut, Ralph; Allegri, Gabriella; Rüfenacht, Véronique; Thöny, Beat; Häberle, Johannes; Nuoffer, Jean‐Marc; Strom, Stephen C (2019). A liver-humanized mouse model of carbamoyl phosphate synthetase 1-deficiency. Journal of Inherited Metabolic Disease, 42(6):1054-1063.

Srinivasan, Raghuraman C; Zabulica, Mihaela; Hammarstedt, Christina; Wu, Tingting; Gramignoli, Roberto; Kannisto, Kristina; Ellis, Ewa; Karadagi, Ahmad; Fingerhut, Ralph; Allegri, Gabriella; Rüfenacht, Véronique; Thöny, Beat; Häberle, Johannes; Nuoffer, Jean‐Marc; Strom, Stephen C (2019). A liver‐humanized mouse model of carbamoyl phosphate synthetase 1‐deficiency. Journal of Inherited Metabolic Disease, 42(6):1054-1063.

Allegri, Gabriella; Deplazes, Sereina; Rimann, Nicole; Causton, Benjamin; Scherer, Tanja; Leff, Jonathan W; Diez‐Fernandez, Carmen; Klimovskaia, Anna; Fingerhut, Ralph; Krijt, Jakub; Kožich, Viktor; Nuoffer, Jean‐Marc; Grisch‐Chan, Hiu M; Thöny, Beat; Häberle, Johannes (2019). Comprehensive characterization of ureagenesis in the spf ash mouse, a model of human ornithine transcarbamylase deficiency, reveals age‐dependency of ammonia detoxification. Journal of Inherited Metabolic Disease, 42(6):1064-1076.

Breslin, Krystal; Wills, Bailey; Ralf, Arwin; Ventayol Garcia, Marina; Kukla-Bartoszek, Magdalena; Pośpiech, Ewelina; Freire-Aradas, Ana; Xavier, Catarina; Ingold, Sabrina; de La Puente, Maria; van der Gaag, Kristiaan J; Herrick, Noah; Haas, Cordula; Parson, Walther; Phillips, Christopher; Sijen, Titia; Branicki, Wojciech; Walsh, Susas; Kayser, Manfred (2019). HIrisPlex-S system for eye, hair, and skin color prediction from DNA: Massively parallel sequencing solutions for two common forensically used platforms. Forensic Science International. Genetics, 43:102152.

Zhu, Yi; Weiss, Tobias; Zhang, Qiushi; Sun, Rui; et al; Gillet, Ludovic; Weller, Michael (2019). High-throughput proteomic analysis of FFPE tissue samples facilitates tumor stratification. Molecular Oncology, 13(11):2305-2328.

Saunders, Gary; Baudis, Michael; Becker, Regina; Beltran, Sergi; Béroud, Christophe; Birney, Ewan; Brooksbank, Cath; Brunak, Søren; Van den Bulcke, Marc; Drysdale, Rachel; Capella-Gutierrez, Salvador; Flicek, Paul; Florindi, Francesco; Goodhand, Peter; Gut, Ivo; Heringa, Jaap; Holub, Petr; Hooyberghs, Jef; Juty, Nick; Keane, Thomas M; Korbel, Jan O; Lappalainen, Ilkka; Leskosek, Brane; Matthijs, Gert; Mayrhofer, Michaela Th; Metspalu, Andres; Navarro, Arcadi; Newhouse, Steven; Nyrönen, Tommi; Page, Angela; et al (2019). Leveraging European infrastructures to access 1 million human genomes by 2022. Nature Reviews. Genetics, 20(11):693-701.

Kresoja-Rakic, Jelena; Santoro, Raffaella (2019). Nucleolus and rRNA gene chromatin in early embryo development. Trends in Genetics : Tig, 35(11):868-879.

Nasyrov, Emil; Nolan, Karen A; Wenger, Roland H; Marti, Hugo H; Kunze, Reiner (2019). The neuronal oxygen-sensing pathway controls postnatal vascularization of the murine brain. FASEB Journal, 33(11):12812-12824.

Salzmann, Andrea Patrizia; Russo, Giancarlo; Aluri, Sirisha; Haas, Cordula (2019). Transcription and microbial profiling of body fluids using a massively parallel sequencing approach. Forensic Science International. Genetics, 43:102149.

Izuno, Ayako; Wicker, Thomas; Hatakeyama, Masaomi; Copetti, Dario; Shimizu, Kentaro K (2019). Updated Genome Assembly and Annotation for Metrosideros polymorpha, an Emerging Model Tree Species of Ecological Divergence. G3 : Genes, Genomes, Genetics, 9(11):3513-3520.

Khoja, Suhail; Nitzahn, Matthew; Truong, Brian; Lambert, Jenna; Willis, Brandon; Allegri, Gabriella; Rüfenacht, Véronique; Häberle, Johannes; Lipshutz, Gerald S (2019). A constitutive knockout of murine carbamoyl phosphate synthetase 1 results in death with marked hyperglutaminemia and hyperammonemia. Journal of Inherited Metabolic Disease, 42(6):1044-1053.

Diez-Fernandez, Carmen; Hertig, Damian; Loup, Marc; Diserens, Gaelle; Henry, Hugues; Vermathen, Peter; Nuoffer, Jean-Marc; Häberle, Johannes; Braissant, Olivier (2019). Argininosuccinate neurotoxicity and prevention by creatine in argininosuccinate lyase deficiency: An in vitro study in rat three-dimensional organotypic brain cell cultures. Journal of Inherited Metabolic Disease, 42(6):1077-1087.

Baruteau, Julien; Diez-Fernandez, Carmen; Lerner, Shaul; Ranucci, Giusy; Gissen, Paul; Dionisi-Vici, Carlo; Nagamani, Sandesh; Erez, Ayelet; Häberle, Johannes (2019). Argininosuccinic aciduria: Recent pathophysiological insights and therapeutic prospects. Journal of Inherited Metabolic Disease, 42(6):1147-1161.

Häberle, Johannes; Burlina, Alberto; Chakrapani, Anupam; Dixon, Marjorie; Karall, Daniela; Lindner, Martin; Mandel, Hanna; Martinelli, Diego; Pintos-Morell, Guillem; Santer, René; Skouma, Anastasia; Servais, Aude; Tal, Galit; Rubio, Vicente; Huemer, Martina; Dionisi-Vici, Carlo (2019). Suggested guidelines for the diagnosis and management of urea cycle disorders: First revision. Journal of Inherited Metabolic Disease, 42(6):1192-1230.

Rogler, Gerhard; Hausmann, Martin (2019). The long and winding road: from genetic risk factors to the understanding of disease-pathogenesis in Crohn's disease. Genes and immunity, 20(8):607-608.

Matschiner, Michael (2019). Selective Sampling of Species and Fossils Influences Age Estimates Under the Fossilized Birth–Death Model. Frontiers in Genetics, 10:1064.

Mehta, Devang; Hirsch-Hoffmann, Matthias; Were, Mariam; Patrignani, Andrea; Zaidi, Syed Shan-E-Ali; Were, Hassan; Gruissem, Wilhelm; Vanderschuren, Hervé (2019). A new full-length circular DNA sequencing method for viral-sized genomes reveals that RNAi transgenic plants provoke a shift in geminivirus populations in the field. Nucleic Acids Research, 47(2):e9-e9.

Robinson, Mark D; Vitek, Olga (2019). Benchmarking comes of age. Genome Biology, 20(1):205.

Accogli, Andrea; Calabretta, Sara; St-Onge, Judith; Boudrahem-Addour, Nassima; Dionne-Laporte, Alexandre; Joset, Pascal; Azzarello-Burri, Silvia; Rauch, Anita; et al; Undiagnosed Diseases Network (UDN) (2019). De Novo Pathogenic Variants in N-cadherin Cause a Syndromic Neurodevelopmental Disorder with Corpus Collosum, Axon, Cardiac, Ocular, and Genital Defects. American Journal of Human Genetics, 105(4):854-868.

Zai, Gwyneth; Barta, Csaba; Cath, Danielle; Eapen, Valsamma; Geller, Daniel; Grünblatt, Edna (2019). New insights and perspectives on the genetics of obsessive-compulsive disorder. Psychiatric Genetics, 29(5):142-151.

Tin, Adrienne; Marten, Jonathan; et al; Devuyst, Olivier (2019). Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels. Nature Genetics, 51(10):1459-1474.

Smith, Neil; Longo, Nicola; Levert, Keith; Hyland, Keith; Blau, Nenad (2019). Exploratory study of the effect of one week of orally administered CNSA-001 (sepiapterin) on CNS levels of tetrahydrobiopterin, dihydrobiopterin and monoamine neurotransmitter metabolites in healthy volunteers. Molecular Genetics and Metabolism, 21:100500.

Xie, Zuokun; Wu, Shengdong; Chen, Junyi; Zhu, Xiaoyu; Zhou, Xin; Hörtensteiner, Stefan; Ren, Guodong; Kuai, Benke (2019). The C-terminal cysteine-rich motif of NYE1/SGR1 is indispensable for its function in chlorophyll degradation in Arabidopsis. Plant molecular biology, 101(3):257-268.

Rocatello, G; El Faquir, N; De Backer, Ole; Swaans, Martin J; Latib, Azeem; Vicentini, Luca; Segers, P; De Beule, Matthieu; de Jaegere, P; Mortier, Peter (2019). The impact of size and position of a mechanical expandable transcatheter aortic valve: novel insights through computational modelling and simulation. Journal of Cardiovascular Translational Research, 12(5):435-446.

Giovannini, Sara; Weller, Marie-Christine; Repmann, Simone; Moch, Holger; Jiricny, Josef (2019). Synthetic lethality between BRCA1 deficiency and poly(ADP-ribose) polymerase inhibition is modulated by processing of endogenous oxidative DNA damage. Nucleic Acids Research, 47(17):9132-9143.

Cimadamore, Alessia; Massari, Francesco; Santoni, Matteo; Mollica, Veronica; Di Nunno, Vincenzo; Cheng, Liang; Lopez-Beltran, Antonio; Scarpelli, Marina; Montironi, Rodolfo; Moch, Holger (2019). Molecular characterization and diagnostic criteria of renal cell carcinoma with emphasis on liquid biopsies. Expert Review of Molecular Diagnostics:1-10.

Sato, Yasuhiro; Tezuka, Ayumi; Kashima, Makoto; Deguchi, Ayumi; Shimizu-Inatsugi, Rie; Yamazaki, Misako; Shimizu, Kentaro K; Nagano, Atsushi J (2019). Transcriptional Variation in Glucosinolate Biosynthetic Genes and Inducible Responses to Aphid Herbivory on Field-Grown Arabidopsis thaliana. Frontiers in Genetics:10:787.

Schmid, Sabine; Klingbiel, Dirk; Aebi, Stefan; Goldhirsch, Aron; Mamot, Christoph; Munzone, Elisabetta; Nolè, Franco; Oehlschlegel, Christian; Pagani, Olivia; Pestalozzi, Bernhard; Rochlitz, Christoph; Thürlimann, Beat; von Moos, Roger; Weder, Patrik; Zaman, Khalil; Ruhstaller, Thomas (2019). Long-term responders to trastuzumab monotherapy in first-line HER-2+ advanced breast cancer: characteristics and survival data. BMC Cancer, 19:902.

Anderegg, Linda; Im Hof Gut, Michelle; Hetzel, Udo; Howerth, Elizabeth W; Leuthard, Fabienne; Kyöstilä, Kaisa; Lohi, Hannes; Pettitt, Louise; Mellersh, Cathryn; Minor, Katie M; Mickelson, James R; Batcher, Kevin; Bannasch, Danika; Jagannathan, Vidhya; Leeb, Tosso (2019). NME5 frameshift variant in Alaskan Malamutes with primary ciliary dyskinesia. PLoS Genetics, 15(9):e1008378.

Durmaz, Esra; Rajpurohit, Subhash; Betancourt, Nicolas; Fabian, Daniel K; Kapun, Martin; Schmidt, Paul; Flatt, Thomas (2019). A clinal polymorphism in the insulin signaling transcription factor foxo contributes to life‐history adaptation in Drosophila. Evolution, 73(9):1774-1792.

Mächler, Elvira; Little, Chelsea J; Wüthrich, Remo; Alther, Roman; Fronhofer, Emanuel A; Gounand, Isabelle; Harvey, Eric; Hürlemann, Samuel; Walser, Jean‐Claude; Altermatt, Florian (2019). Assessing different components of diversity across a river network using eDNA. Environmental DNA, 1(3):290-301.

van Moorsel, Sofia J; Schmid, Marc W; Wagemaker, Niels C A M; van Gurp, Thomas; Schmid, Bernhard; Vergeer, Philippine (2019). Evidence for rapid evolution in a grassland biodiversity experiment. Molecular Ecology, 28(17):4097-4117.

Berger, Burkhard; Heinrich, Josephin; Niederstätter, Harald; Hecht, Werner; Morf, Nadja; Hellmann, Andreas; Rohleder, Udo; Schleenbecker, Uwe; Berger, Cordula; Parson, Walther (2019). Forensic characterization and statistical considerations of the CaDNAP 13-STR panel in 1,184 domestic dogs from Germany, Austria, and Switzerland. Forensic Science International. Genetics, 42:90-98.

Forny, Patrick; Hochuli, Michel; Rahman, Yusof; Deheragoda, Maesha; Weber, Achim; Baruteau, Julien; Grunewald, Stephanie (2019). Liver neoplasms in methylmalonic aciduria - an emerging complication. Journal of Inherited Metabolic Disease, 42(5):793-802.

Valim, Henrique F; McGale, Erica; Yon, Felipe; Halitschke, Rayko; Fragoso, Variluska; Schuman, Meredith Christine; Baldwin, Ian T (2019). The clock gene TOC1 in shoots, not roots, determines fitness of Nicotiana attenuata under drought. Plant Physiology, 181(1):305-318.

Gupta, Sapna; Gallego-Villar, Lorena; Wang, Liqun; Lee, Hyung-Ok; Nasrallah, Gheyath; Al-Dewik, Nader; Häberle, Johannes; Thöny, Beat; Blom, Henk J; Ben-Omran, Tawfeg; Kruger, Warren D (2019). Analysis of the Qatari R336C cystathionine β-synthase protein in mice. Journal of Inherited Metabolic Disease, 42(5):831-838.

Al-Dewik, Nader; Ali, Alaa; Mahmoud, Yassmin; Shahbeck, Noora; Ali, Rehab; Mahmoud, Laila; Al-Mureikhi, Mariam; Al-Mesaifri, Fatma; Musa, Sara; El-Akouri, Karen; Almulla, Mariam; Al Saadi, Reem; Nasrallah, Gheyath K; Samara, Muthanna; Abdoh, Ghassan; Rifai, Hilal Al; Häberle, Johannes; Thöny, Beat; Kruger, Warren; Blom, Henk J; Ben-Omran, Tawfeg (2019). Natural history, with clinical, biochemical, and molecular characterization of classical homocystinuria in the Qatari population. Journal of Inherited Metabolic Disease, 42(5):818-830.

Lee, Hyung-Ok; Gallego-Villar, Lorena; Grisch-Chan, Hiu Man; Häberle, Johannes; Thöny, Beat; Kruger, Warren D (2019). Treatment of Cystathionine β-Synthase Deficiency in Mice Using a Minicircle-Based Naked DNA Vector. Human Gene Therapy, 30(9):1093-1100.

Matsumoto, Shirou; Häberle, Johannes; Kido, Jun; Mitsubuchi, Hiroshi; Endo, Fumio; Nakamura, Kimitoshi (2019). Urea cycle disorders-update. Journal of Human Genetics, 64(9):833-847.

Schmid, Franca; Barrett, Matthew J P; Obrist, Dominik; Weber, Bruno; Jenny, Patrick (2019). Red blood cells stabilize flow in brain microvascular networks. PLoS Computational Biology, 15(8):e1007231.

Kufner, Verena; Plate, Andreas; Schmutz, Stefan; Braun, Dominique L; Günthard, Huldrych F; Capaul, Riccarda; Zbinden, Andrea; Mueller, Nicolas J; Trkola, Alexandra; Huber, Michael (2019). Two Years of Viral Metagenomics in a Tertiary Diagnostics Unit: Evaluation of the First 105 Cases. Genes, 10(9):pii: E661.

Zeng, Shuqin; Bick, Jochen; Kradolfer, David; Knubben, Johannes; Flöter, Veronika L; Bauersachs, Stefan; Ulbrich, Susanne E (2019). Differential transcriptome dynamics during the onset of conceptus elongation and between female and male porcine embryos. BMC Genomics, 20(1):679.

Junier, Thomas; Huber, Michael; Schmutz, Stefan; Kufner, Verena; Zagordi, Osvaldo; Neuenschwander, Stefan; Ramette, Alban; Kubacki, Jakub; Bachofen, Claudia; Qi, Weihong; Laubscher, Florian; Cordey, Samuel; Kaiser, Laurent; Beuret, Christian; Barbié, Valérie; Fellay, Jacques; Lebrand, Aitana (2019). Viral metagenomics in the clinical realm: lessons learned from a Swiss-wide ring trial. Genes, 10(9):E655.

Koppe, Georgia; Toutounji, Hazem; Kirsch, Peter; Lis, Stefanie; Durstewitz, Daniel (2019). Identifying nonlinear dynamical systems via generative recurrent neural networks with applications to fMRI. PLoS Computational Biology, 15(8):e1007263.

Fankhauser, Christian Daniel; Roth, Lisa; Grossmann, Nico Christian; Kranzbühler, Benedikt; Eberli, Daniel; Sulser, Tullio; Moch, Holger; Bode, Peter-Karl; Beyer, Joerg; Hermanns, Thomas (2019). CXCL12 expression is an adverse predictor for disease recurrence in patients with metastatic non-seminomatous testicular germ cell tumors. BMC Cancer, 19:802.

Rocha, Lamarck; Ribeiro, Patrícia Luz; Endress, Peter K; Rapini, Alessandro (2019). A brainstorm on the systematics of Turnera (Turneraceae, Malpighiales) caused by insights from molecular phylogenetics and morphological evolution. Molecular Phylogenetics and Evolution, 137:44-63.

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Amar, Ali; Majmundar, Amar J; Ullah, Ihsan; Afzal, Ayesha; Braun, Daniela A; Shril, Shirlee; Daga, Ankana; Jobst-Schwan, Tilman; Ahmad, Mumtaz; Sayer, John A; Gee, Heon Yung; Halbritter, Jan; Knöpfel, Thomas; Hernando, Nati; Werner, Andreas; Wagner, Carsten; Khaliq, Shagufta; Hildebrandt, Friedhelm (2019). Gene panel sequencing identifies a likely monogenic cause in 7% of 235 Pakistani families with nephrolithiasis. Human Genetics, 138(3):211-219.

Sakornsakolpat, Phuwanat; Prokopenko, Dmitry; Lamontagne, Maxime; et al; Puhan, Milo (2019). Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations. Nature Genetics, 51(3):494-505.

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Schmid, Marc W; Hahl, Terhi; van Moorsel, Sofia J; Wagg, Cameron; De Deyn, Gerlinde B; Schmid, Bernhard (2019). Feedbacks of plant identity and diversity on the diversity and community composition of rhizosphere microbiomes from a long-term biodiversity experiment. Molecular Ecology, 28(4):863-878.

Koller, Teresa; Brunner, Susanne; Herren, Gerhard; Sanchez-Martin, Javier; Hurni, Severine; Keller, Beat (2019). Field grown transgenic Pm3e wheat lines show powdery mildew resistance and no fitness costs associated with high transgene expression. Transgenic research, 28(1):9-20.

Milner, Sara G; Jost, Matthias; Taketa, Shin; et al; Herren, Gerhard; Müller, Thomas; Krattinger, Simon G; Keller, Beat (2019). Genebank genomics highlights the diversity of a global barley collection. Nature Genetics, 51(2):319-326.

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Ackermans, Nicole L; Clauss, Marcus; Winkler, Daniela E; Schulz-Kornas, Ellen; Kaiser, Thomas M; Müller, Dennis W H; Kircher, Patrick R; Hummel, Jürgen; Hatt, Jean-Michel (2019). Root growth compensates for molar wear in adult goats (Capra aegagrus hircus). Journal of Experimental Zoology. Part A, Ecological and Integrative Physiology, 331(2):139-148.

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Karlsson Linnér, Richard; Biroli, Pietro; Fehr, Ernst; et al; Zünd, Christian L (2019). Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences. Nature Genetics, 51:245-257.

van Gijn, Stephanie; Wierenga, Elles; van den Tempel, Nathalie; Kok, Yannick P; Heijink, Anne Margriet; Spierings, Diana C J; Foijer, Floris; van Vugt, Marcel A T M; Fehrmann, Rudolf S N (2019). TPX2/Aurora kinase A signaling as a potential therapeutic target in genomically unstable cancer cells. Oncogene, 38(6):852-867.

Stevens, Marc J A; Spoerry Serrano, Nathalie; Cernela, Nicole; Schmitt, Sarah; Schrenzel, Jacques; Stephan, Roger (2019). Massive diversity in whole-genome sequences of Streptococcus suis strains from infected pigs in Switzerland. Microbiology Resource Announcements, 8(5):e01656-18.

Egli-Gany, Dianne; Spaar Zographos, Anne; Diebold, Joachim; Masserey Spicher, Virginie; Frey Tirri, Brigitte; Heusser, Rolf; Dillner, Joakim; Petignat, Patrick; Sahli, Roland; Low, Nicola (2019). Human papillomavirus genotype distribution and socio-behavioural characteristics in women with cervical pre-cancer and cancer at the start of a human papillomavirus vaccination programme: the CIN3+ plus study. BMC Cancer, 19:111.

Kroupova, Alena; Ivaşcu, Anastasia; Reimão-Pinto, Madalena M; Ameres, Stefan L; Jinek, Martin (2019). Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor. Nucleic Acids Research, 47(2):1030-1042.

Arlt, Matthias J; Kuzmanov, Aleksandar; Snedeker, Jess G; Fuchs, Bruno; Silvan, Unai; Sabile, Adam A (2019). Fascin-1 enhances experimental osteosarcoma tumor formation and metastasis and is related to poor patient outcome. BMC Cancer, 19(1):83.

Szklarczyk, Damian; Gable, Annika L; Lyon, David; Junge, Alexander; Wyder, Stefan; Huerta-Cepas, Jaime; Simonovic, Milan; Doncheva, Nadezhda T; Morris, John H; Bork, Peer; Jensen, Lars J; von Mering, Christian (2019). STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets. Nucleic Acids Research, 47(D1):D607-D613.

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Vinckier, Fabien; Rigoux, Lionel; Kurniawan, Irma T; Hu, Chen; Bourgeois-Gironde, Sacha; Daunizeau, Jean; Pessiglione, Mathias (2019). Sour grapes and sweet victories: How actions shape preferences. PLoS Computational Biology, 15:e1006499.

Scaravaggi, Iside; Borel, Nicole; Romer, Rebekka; Imboden, Isabel; Ulbrich, Susanne E; Zeng, Shuqin; Bollwein, Heiner; Bauersachs, Stefan (2019). Cell type-specific endometrial transcriptome changes during initial recognition of pregnancy in the mare. Reproduction, Fertility and Development, 31(3):496.

Chekalin, Evgeny; Rubanovich, Alexandr; Tatarinova, Tatiana V; Kasianov, Artem; Bender, Nicole; Chekalina, Marina; Staub, Kaspar; Koepke, Nikola; Rühli, Frank; Bruskin, Sergey; Morozova, Irina (2019). Changes in biological pathways during 6,000 years of civilization in Europe. Molecular Biology and Evolution, 36(1):127-140.

Demontis, Ditte; Walters, Raymond K; Martin, Joanna; Mattheisen, Manuel; et al; Steinhausen, Hans-Christoph; Walitza, Susanne (2019). Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder. Nature Genetics, 51(1):63-75.

Niozas, G; Tsousis, G; Steinhöfel, I; Brozos, C; Römer, A; Wiedemann, S; Bollwein, Heiner; Kaske, Martin (2019). Extended lactation in high-yielding dairy cows. I. Effects on reproductive measurements. Journal of Dairy Science, 102(1):799-810.

Niozas, G; Tsousis, G; Malesios, C; Steinhöfel, I; Boscos, C; Bollwein, Heiner; Kaske, Martin (2019). Extended lactation in high-yielding dairy cows. II. Effects on milk production, udder health, and body measurements. Journal of Dairy Science, 102(1):811-823.

Schöneberg, T; Kibler, K; Wettstein, F E; Bucheli, T D; Forrer, H R; Musa, T; Mascher, F; Bertossa, M; Keller, B; Vogelgsang, S (2019). Influence of temperature, humidity duration and growth stage on the infection and mycotoxin production by Fusarium langsethiae and Fusarium poae in oats. Plant Pathology Journal, 68(1):173-184.

Rödel, Franz; Martin, Daniel; Balermpas, Panagiotis; Wieland, Ulrike; Winkelmann, Ria; Riekmann, Thorsten; Falk, Stephan; Rödel, Claus; Fokas, Emmanouil (2019). Modulation of radiation sensitivity and antitumor immunity by viral pathogenic factors: Implications for radio-immunotherapy. Elsevier Oceanography Series, 1871(1):126-137.

Van Santen, Marit; Linder, Hans Peter (2019). The assembly of the Cape flora is consistent with an edaphic rather than climatic filter. Molecular Phylogenetics and Evolution, 142:106645.

Payne, Joshua L; Wagner, Andreas (2019). The causes of evolvability and their evolution. Nature Reviews. Genetics, 20(1):24-38.

Posset, Roland; Garbade, Sven F; Boy, Nikolas; Burlina, Alberto B; Dionisi-Vici, Carlo; Dobbelaere, Dries; Garcia-Cazorla, Angeles; de Lonlay, Pascale; Teles, Elisa Leão; Vara, Roshni; Ah Mew, Nicholas; Batshaw, Mark L; Baumgartner, Matthias R; McCandless, Shawn; Seminara, Jennifer; Summar, Marshall; Hoffmann, Georg F; Kölker, Stefan; Burgard, Peter (2019). Transatlantic combined and comparative data analysis of 1095 patients with urea cycle disorders-a successful strategy for clinical research of rare diseases. Journal of Inherited Metabolic Disease, 42(1):93-106.

Karlsson Linnér, Richard; Biroli, Pietro; Fehr, Ernst; Zünd, Christian L; et al (2019). Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences. BioRxiv 261081, Cold Spring Harbor Laboratory.

Ehlert, Karoline; Levade, Thierry; Di Rocco, Maja; Lanino, Edoardo; Albert, Michael H; Führer, Monika; Jarisch, Andrea; Güngör, Tayfun; Ayuk, Francis; Vormoor, Josef (2019). Allogeneic hematopoietic cell transplantation in Farber disease. Journal of Inherited Metabolic Disease, 42(2):286-294.

Suessbier, Ute; Nombela-Arrieta, César (2019). Assessing Cellular Hypoxic Status In Situ Within the Bone Marrow Microenvironment. Methods in Molecular Biology, 2017:123-134.

Moosa, Shahida; Yamamoto, Guilherme L; Garbes, Lutz; et al; Giunta, Cecilia; Rohrbach, Marianne; Janner, Marco (2019). Autosomal-Recessive Mutations in MESD Cause Osteogenesis Imperfecta. American Journal of Human Genetics, 105(4):836-843.

Rahman, Shamima; Baumgartner, Matthias (2019). B Vitamins: Small molecules, big effects. Journal of Inherited Metabolic Disease, 42(4):579-580.

Fioretta, E S; von Boehmer, L; Motta, S E; Lintas, V; Hoerstrup, S P; Emmert, M Y (2019). Cardiovascular tissue engineering: From basic science to clinical application. Experimental Gerontology, 117:1-18.

Rymen, Daisy; Ritelli, Marco; Zoppi, Nicoletta; Cinquina, Valeria; Giunta, Cecilia; Rohrbach, Marianne; Colombi, Marina (2019). Clinical and Molecular Characterization of Classical-Like Ehlers-Danlos Syndrome Due to a Novel TNXB Variant. Genes, 10(11):843.

Malmström, Lars (2019). Computational Proteomics with Jupyter and Python. In: Evans, C; Wright, P; Noirel, J. Mass Spectrometry of Proteins. Switzerland: Springer, 237-248.

Molema, Femke; Gleich, Florian; Burgard, Peter; et al; Baumgartner, M R (2019). Decreased plasma l-arginine levels in organic acidurias (MMA and PA) and decreased plasma branched-chain amino acid levels in urea cycle disorders as a potential cause of growth retardation: Options for treatment. Molecular Genetics and Metabolism, 126(4):397-405.

Häberle, Johannes; Thöny, Beat (2019). Editorial. Journal of Inherited Metabolic Disease, 42(6):1041-1043.

Molema, Femke; Gleich, Florian; Burgard, Peter; et al; Baumgartner, M R (2019). Evaluation of dietary treatment and amino acid supplementation in organic acidurias and urea‐cycle disorders: On the basis of information from a European multicenter registry. Journal of Inherited Metabolic Disease, 42(6):1162-1175.

Ballout, Rami A; Al Alam, Chadi; Bonnen, Penelope E; Huemer, Martina; El-Hattab, Ayman W; Shbarou, Rolla (2019). FBXL4-Related Mitochondrial DNA Depletion Syndrome 13 (MTDPS13): A Case Report With a Comprehensive Mutation Review. Frontiers in Genetics, 10:39.

Merten, Hannes; Schaefer, Jonas V; Brandl, Fabian; Zangemeister-Wittke, Uwe; Plückthun, Andreas (2019). Facile Site-Specific Multiconjugation Strategies in Recombinant Proteins Produced in Bacteria. In: Massa, Sam; Devoogdt, Nick. Bioconjugation : Methods and Protocols. New York: Springer, 253-273.

Felley-Bosco, Emanuela (2019). Hedgehog signaling in mesothelioma: 2019 status. Frontiers in Genetics, 10:1121.

Hof, Danielle; von Eckardstein, Arnold (2019). High-Sensitivity Troponin Assays in Clinical Diagnostics of Acute Coronary Syndrome. In: Heitzmann, CW. Calcium-Binding Proteins of the EF-Hand Superfamily. Humana Press, New York, NY: Springer, 645-662.

About, Frédégonde; Bibert, Stéphanie; Jouanguy, Emmanuelle; Nalpas, Bertrand; Lorenzo, Lazaro; Rattina, Vimel; Zarhrate, Mohammed; Hanein, Sylvain; Munteanu, Mona; Müllhaupt, Beat; Semela, David; Semmo, Nasser; Casanova, Jean-Laurent; Theodorou, Ioannis; Sultanik, Philippe; Poynard, Thierry; Pol, Stanislas; Bochud, Pierre-Yves; Cobat, Aurélie; Abel, Laurent; Swiss Hepatitis C Cohort Study Group; French ANRS HC EP 26 Genoscan Study Group (2019). Identification of an Endoglin Variant Associated With HCV-Related Liver Fibrosis Progression by Next-Generation Sequencing. Frontiers in Genetics, 10:1024.

Buerger, Corinna; Garbade, Sven F; Dietrich Alber, Fabienne; Waisbren, Susan E; McCarter, Robert; Kölker, Stefan; Burgard, Peter; Ah Mew, Nicholas; Batshaw, Mark L; Baumgartner, Matthias R; Berry, Susan A; Coughlin, Curtis; Cederbaum, Stephen; Diaz, George A; Feigenbaum, Annette; Gallagher, Renata C; Harding, Cary O; Hoffmann, Georg; Kerr, Douglas S; Lee, Brendan; Le Mons, Cynthia; Lichter‐Konecki, Uta; McCandless, Shawn E; Lawrence Merritt, J; Nagamani, Sandesh C S; Schulze, Andreas; Seashore, Margretta R; Stricker, Tamar; Summar, Marshall L; Tuchman, Mendel; et al (2019). Impairment of cognitive function in ornithine transcarbamylase deficiency is global rather than domain‐specific and is associated with disease onset, sex, maximum ammonium, and number of hyperammonemic events. Journal of Inherited Metabolic Disease, 42(2):243-253.

Grimm, Christian; Remé, Charlotte E (2019). Light Damage Models of Retinal Degeneration. Methods in Molecular Biology, 1834:167-178.

Tomska, Katarzyna; Scheinost, Sebastian; Zenz, Thorsten (2019). Lymphoma and Leukemia Cell Vulnerabilities and Resistance Identified by Compound Library Screens. Methods in Molecular Biology, 1956:351-362.

Loi, Monica; Ligeon, Laure-Anne; Münz, Christian (2019). MHC Class I Internalization via Autophagy Proteins. In: Ktistakis, Nicholas; Florey, Oliver. Autophagy. New York: Springer, 455-477.

Hochstrasser, R; Hilbi, H (2019). Migration of Acanthamoeba castellanii through Legionella Biofilms. In: Buchrieser, C; Hilbi, H. Legionella : Methods and Protocols (Second Edition). New York: Springer, 79-89.

Gannage, Monique; da Silva, Rosa Barreira; Münz, Christian (2019). Monitoring Antigen Processing for MHC Presentation via Macroautophagy. In: van Endert, Peter. Antigen Processing : Methods and Protocols. New York: Springer, 357-373.

Smith, Neil; Longo, Nicola; Levert, Keith; Hyland, Keith; Blau, Nenad (2019). Phase I clinical evaluation of CNSA-001 (sepiapterin), a novel pharmacological treatment for phenylketonuria and tetrahydrobiopterin deficiencies, in healthy volunteers. Molecular Genetics and Metabolism, 126:406-412.

Huemer, Martina; Diodato, Daria; Martinelli, Diego; Olivieri, Giorgia; Blom, Henk; Gleich, Florian; Kölker, Stefan; Kožich, Viktor; Morris, Andrew A; Seifert, Burkhardt; Froese, D Sean; Baumgartner, Matthias R; Dionisi‐Vici, Carlo; Martin, Carlos Alcalde; Baethmann, Martina; Ballhausen, Diana; Blasco‐Alonso, Javier; Boy, Nikolas; Bueno, Maria; Burgos Peláez, Rosa; Cerone, Roberto; Chabrol, Brigitte; Chapman, Kimberly A; Couce, Maria Luz; Crushell, Ellen; Dalmau Serra, Jaime; Diogo, Luisa; Ficicioglu, Can; García Jimenez, Maria Concepcion; García Silva, Maria Teresa; et al (2019). Phenotype, treatment practice and outcome in the cobalamin-dependent remethylation disorders and MTHFR deficiency: Data from the E-HOD registry. Journal of Inherited Metabolic Disease, 42(2):333-352.

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Bremmer, Felix; Bohnenberger, Hanibal; Küffer, Stefan; Oellerich, Thomas; Serve, Hubert; Urlaub, Henning; Strauss, Arne; Maatoug, Yasmine; Behnes, Carl Ludwig; Oing, Christoph; Radzun, Heinz Joachim; Ströbel, Philipp; Balabanov, Stefan; Honecker, Friedemann (2019). Proteomic Comparison of Malignant Human Germ Cell Tumor Cell Lines. Disease Markers, 2019:8298524.

Welin, A; Weber, S; Hilbi, H (2019). Quantitative imaging flow cytometry of Legionella-containing vacuoles in dually fluorescence-labelled Dictyostelium. In: Buchrieser, C; Hilbi, H. Legionella : Methods and Protocols (Second Edition). New York: Springer, 161-177.

Frauchiger, Anna Lisa; Dummer, Reinhard; Mangana, Joanna (2019). Serum S100B Levels in Melanoma. Methods in Molecular Biology, 1929:691-700.

Personnic, Nicolas; Striednig, Bianca; Hilbi, Hubert (2019). Single cell analysis of Legionella and Legionella-infected Acanthamoeba by agarose embedment. In: Buchrieser, C; Hilbi, H. Legionella : Methods and Protocols (Second Edition). New York: Springer, 191-204.

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Jimenez-Rojo, Lucia; Mitsiadis, Thimios A (2019). Tissue Recombination and Kidney Capsule Transplantation Assays for the Study of Epithelial-Mesenchymal Interactions. In: Papagerakis, Petros. Odontogenesis. Methods and Protocols. New York: Springer, 49-55.

Wongkittichote, Parith; Cunningham, Gary; Summar, Marshall L; Pumbo, Elena; Forny, Patrick; Baumgartner, Matthias R; Chapman, Kimberly A (2019). Tricarboxylic acid cycle enzyme activities in a mouse model of methylmalonic aciduria. Molecular Genetics and Metabolism, 128(4):444-451.

Froese, D Sean; Fowler, Brian; Baumgartner, Matthias R (2019). Vitamin B12, folate, and the methionine remethylation cycle-biochemistry, pathways, and regulation. Journal of Inherited Metabolic Disease, 42(4):673-685.

2018

Nishimura, Tamiko; Fakim, Hana; Brandmann, Tobias; Youn, Ji-Young; Gingras, Anne-Claude; Jinek, Martin; Fabian, Marc R (2018). Human MARF1 is an endoribonuclease that interacts with the DCP1:2 decapping complex and degrades target mRNAs. Nucleic Acids Research, 46(22):12008-12021.

Altmeyer, Matthias (2018). Cells take a break when they are TIARed. EMBO Reports:e47403.

Stephen, Joshi; Maddirevula, Sateesh; Nampoothiri, Sheela; et al; Steindl, Katharina; Joset, Pascal; Ramantani, Georgia (2018). Bi-allelic TMEM94 Truncating Variants Are Associated with Neurodevelopmental Delay, Congenital Heart Defects, and Distinct Facial Dysmorphism. American Journal of Human Genetics, 103(6):948-967.

Schäfer, Beat W (2018). Duxbling Stem Cells Meet Tumorigenesis. Cell Stem Cell, 23(6):773-774.

Irwin, Darren E; Milá, Borja; Toews, David P L; Brelsford, Alan; Kenyon, Haley L; Porter, Alison N; Grossen, Christine; Delmore, Kira E; Alcaide, Miguel; Irwin, Jessica H (2018). A comparison of genomic islands of differentiation across three young avian species pairs. Molecular Ecology, 27(23):4839-4855.

Thind, Anupriya Kaur; Wicker, Thomas; Müller, Thomas; Ackermann, Patrick M; Steuernagel, Burkhard; Wulff, Brande B H; Spannagl, Manuel; Twardziok, Sven O; Felder, Marius; Lux, Thomas; Mayer, Klaus F X; Keller, Beat; Krattinger, Simon G (2018). Chromosome-scale comparative sequence analysis unravels molecular mechanisms of genome dynamics between two wheat cultivars. Genome Biology, 19:104.

Inglin, Raffael C; Meile, Leo; Stevens, Marc J A (2018). Clustering of pan- and core-genome of lactobacillus provides novel evolutionary insights for differentiation. BMC Genomics, 19(1):284.

Lindenblatt, Dennis; Terraneo, Nastassja; Pellegrini, Giovanni; Cohrs, Susan; Spycher, Philipp René; Vukovic, David; Béhé, Martin; Schibli, Roger; Grünberg, Jürgen (2018). Combination of lutetium-177 labelled anti-L1CAM antibody chCE7 with the clinically relevant protein kinase inhibitor MK1775: a novel combination against human ovarian carcinoma. BMC Cancer, 18(1):922.

Schmid, Marc W; Giraldo-Fonseca, Alejandro; Rövekamp, Moritz; Smetanin, Dmitry; Bowman, John L; Grossniklaus, Ueli (2018). Extensive epigenetic reprogramming during the life cycle of Marchantia polymorpha. Genome Biology, 19(1):9-..

Di Cesare, Andrea; Cabello-Yeves, Pedro J; Chrismas, Nathan A M; Sánchez-Baracaldo, Patricia; Salcher, Michaela M; Callieri, Cristiana (2018). Genome analysis of the freshwater planktonic Vulcanococcus limneticus sp. nov. reveals horizontal transfer of nitrogenase operon and alternative pathways of nitrogen utilization. BMC Genomics, 19(1):259.

Mattle-Greminger, Maja P; Bilgin Sonay, Tugce; Nater, Alexander; Pybus, Marc; Desai, Tariq; de Valles, Guillem; Casals, Ferran; Scally, Aylwyn; Bertranpetit, Jaume; Marques-Bonet, Tomas; van Schaik, Carel P; Anisimova, Maria; Krützen, Michael (2018). Genomes reveal marked differences in the adaptive evolution between orangutan species. Genome Biology, 19(1):193.

Gallana, M; Utsunomiya, Y T; Dolf, G; Pintor Torrecilha, R B; Falbo, A K; Jagannathan, V; Leeb, T; Reichler, Iris M; Sölkner, J; Schelling, Claude (2018). Genome‐wide association study and heritability estimate for ectopic ureters in Entlebucher mountain dogs. Animal Genetics, 49(6):645-650.

You, Wenpeng; Rühli, Frank J; Henneberg, Renata J; Henneberg, Maciej (2018). Greater family size is associated with less cancer risk: an ecological analysis of 178 countries. BMC Cancer, 18:924.

Wyck, Sarah; Herrera, Carolina; Requena, Cristina E; Bittner, Lilli; Hájková, Petra; Bollwein, Heiner; Santoro, Raffaella (2018). Oxidative stress in sperm affects the epigenetic reprogramming in early embryonic development. Epigenetics & Chromatin, 11(1):60.

Schiestl, Florian P; Balmer, Alice; Gervasi, Daniel D (2018). Real-time evolution supports a unique trajectory for generalized pollination. Evolution, 72(12):2653-2668.

Martínez-González, Nahara Anani; Neuner-Jehle, Stefan; Plate, Andreas; Rosemann, Thomas; Senn, Oliver (2018). The effects of shared decision-making compared to usual care for prostate cancer screening decisions: a systematic review and meta-analysis. BMC Cancer, 18:1015.

Fuchs, Katharina; Cardona Gloria, Yamel; Wolz, Olaf‐Oliver; Herster, Franziska; Sharma, Lokesh; Dillen, Carly A; Täumer, Christoph; Dickhöfer, Sabine; Bittner, Zsofia; Dang, Truong‐Minh; Singh, Anurag; Haischer, Daniel; Schlöffel, Maria A; Koymans, Kirsten J; Sanmuganantham, Tharmila; Krach, Milena; Roger, Thierry; Le Roy, Didier; Schilling, Nadine A; Frauhammer, Felix; Miller, Lloyd S; Nürnberger, Thorsten; LeibundGut-Landmann, Salomé; Gust, Andrea A; Macek, Boris; Frank, Martin; Gouttefangeas, Cécile; Dela Cruz, Charles S; Hartl, Dominik; Weber, Alexander N R; et al (2018). The fungal ligand chitin directly binds TLR2 and triggers inflammation dependent on oligomer size. EMBO Reports, 19(12):e46065.

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Bärnreuther, Sandra (2018). Suitable substances: how biobanks (re)store biologicals. New Genetics and Society, 37(4):319-337.

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Ramsauer, Anna Sophie; Bachofen, Claudia; Kubacki, Jakub; Favrot, Claude; Nicolier, Alexandra; Fraefel, Cornel; Tobler, Kurt (2018). Complete genome sequence of a Boa (Boa constrictor)-specific papillomavirus type 1 isolate. Microbiology Resource Announcements, 7(16):e01159.

Aguilar-Rodríguez, José; Wagner, Andreas (2018). Metabolic determinants of enzyme evolution in a genome-scale bacterial metabolic network. Genome Biology and Evolution, 10(11):3076-3088.

Zellweger, Ralph; Lopes, Massimo (2018). Dynamic Architecture of Eukaryotic DNA Replication Forks In Vivo, Visualized by Electron Microscopy. In: Muzi-Falconi, Marco; Brown, Grant W. Genome Instability : Methods and Protocols. New York: Springer, 261-294.

Daga, Neha; Eicher, Simone; Kannan, Abhilash; Casanova, Alain; Low, Shyan H; Kreibich, Saskia; Andritschke, Daniel; Emmenlauer, Mario; Jenkins, Jeremy L; Hardt, Wolf-Dietrich; Greber, Urs F; Dehio, Christoph; von Mering, Christian (2018). Growth-restricting effects of siRNA transfections: a largely deterministic combination of off-target binding and hybridization-independent competition. Nucleic Acids Research, 46(18):9309-9320.

Scarborough, Joseph; Mueller, Flavia; Weber-Stadlbauer, Ulrike; Richetto, Juliet; Meyer, Urs (2018). Dependency of prepulse inhibition deficits on baseline startle reactivity in a mouse model of the human 22q11.2 microdeletion syndrome. Genes, Brain and Behavior:e12523.

Bardelli, Marco; Frontzek, Karl; Simonelli, Luca; Hornemann, Simone; Pedotti, Mattia; Mazzola, Federica; Carta, Manfredi; Eckhardt, Valeria; D’Antuono, Rocco; Virgilio, Tommaso; González, Santiago F; Aguzzi, Adriano; Varani, Luca (2018). A bispecific immunotweezer prevents soluble PrP oligomers and abolishes prion toxicity. PLoS Pathogens, 14(10):e1007335.

Singh, Simrat Pal; Hurni, Severine; Ruinelli, Michela; Brunner, Susanne; Sanchez-Martin, Javier; Krukowski, Patricia; Peditto, David; Buchmann, Gabriele; Zbinden, Helen; Keller, Beat (2018). Evolutionary divergence of the rye Pm17 and Pm8 resistance genes reveals ancient diversity. Plant molecular biology, 98(3):249-260.

Bourgeois, Yann; Stritt, Christoph; Walser, Jean-Claude; Gordon, Sean P; Vogel, John P; Roulin, Anne C (2018). Genome-wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon. The Plant Journal, 96(2):438-451.

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Huang, Ji; Montani, Jean-Pierre; Verrey, François; Feraille, Eric; Ming, Xiu-Fen; Yang, Zhihong (2018). Arginase-II negatively regulates renal aquaporin-2 and water reabsorption. FASEB Journal, 32(10):5520-5531.

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Schmid, Michael; Frei, Daniel; Patrignani, Andrea; Schlapbach, Ralph; Frey, Jürg E; Remus-Emsermann, Mitja N P; Ahrens, Christian H (2018). Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats. Nucleic Acids Research, 46(17):8953-8965.

Cernikova, Lenka; Faso, Carmen; Hehl, Adrian B (2018). Five facts about Giardia lamblia. PLoS Pathogens, 14(9):e1007250.

Hartmann, Jessica; Münch, Robert C; Freiling, Ruth-Therese; Schneider, Irene C; Dreier, Birgit; Samukange, Washington; Koch, Joachim; Seeger, Markus A; Plückthun, Andreas; Buchholz, Christian J (2018). A Library-Based Screening Strategy for the Identification of DARPins as Ligands for Receptor-Targeted AAV and Lentiviral Vectors. Molecular Therapy - Methods & Clinical Development, 10:128-143.

Hornemann, Thorsten; Alecu, Irina; Hagenbuch, Niels; Zhakupova, Assem; Cremonesi, Alessio; Gautschi, Matthias; Jung, Hans H; Meienberg, Fabian; Bilz, Stefan; Christ, Emanuel; Baumgartner, Matthias R; Hochuli, Michel (2018). Disturbed sphingolipid metabolism with elevated 1-deoxysphingolipids in glycogen storage disease type I – A link to metabolic control. Molecular Genetics and Metabolism, 125(1/2):73-78.

Terranova, M; Kreuzer, Michael; Braun, Ueli; Schwarm, Angela (2018). In vitro screening of temperate climate forages from a variety of woody plants for their potential to mitigate ruminal methane and ammonia formation. Journal of Agricultural Science, 156(7):929-941.

Zubakov, Dmitry; Chamier-Ciemińska, Joanna; Kokmeijer, Iris; Maciejewska, Agnieszka; Martínez, Pilar; Pawłowski, Ryszard; Haas, Cordula; Kayser, Manfred (2018). Introducing novel type of human DNA markers for forensic tissue identification: DNA copy number variation allows the detection of blood and semen. Forensic Science International. Genetics, 36:112-118.

Kovar, Lynsey; Nageswara-Rao, Madhugiri; Ortega-Rodriguez, Sealtiel; Dugas, Diana V; Straub, Shannon; Cronn, Richard; Strickler, Susan R; Hughes, Colin E; Hanley, Kathryn A; Rodriguez, Deyra N; Langhorst, Bradley W; Dimalanta, Eileen T; Bailey, C Donovan (2018). PacBio-based mitochondrial genome assembly of Leucaena trichandra (Leguminosae) and an intrageneric assessment of mitochondrial RNA editing. Genome Biology and Evolution, 10(9):2501-2517.

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Roth, Morgane; Florez-Rueda, Ana M; Paris, Margot; Städler, Thomas (2018). Wild tomato endosperm transcriptomes reveal common roles of genomic imprinting in both nuclear and cellular endosperm. The Plant Journal, 95(6):1084-1101.

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