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2025

Resutik, Peter; Schneider, Joëlle; Aeschbacher, Simon; Vigeland, Magnus Dehli; Gysi, Mario; Moser, Corinne; Barbieri, Chiara; Widmer, Paul; Currat, Mathias; Kratzer, Adelgunde; Krützen, Michael; Haas, Cordula; Arora, Natasha (2025). Uncovering genetic signatures of the Walser migration in the Alps: Patterns of diversity and differentiation. Forensic Science International. Genetics, 76:103206.

Bürger, Olga; Humbel, Angelika; Ivanovski, Ivan; Baumer, Alessandra; Rauch, Anita (2025). Further evidence for an attenuated phenotype of in‐frame DMD deletions affecting the central rod domain of dystrophin around exon 48. American Journal of Medical Genetics. Part A, 197(1):e63842.

Schauer, Stefan; Othman, Alaa (2025). High-Throughput RPLC-MS/MS Quantification of Short- and Medium-Chain Fatty Acids. In: Giera, M. Clinical Metabolomics (Second Edition). New York, NY: Springer (Bücher), 195-207.

Hülsmeier, Andreas J; Gunasegaram, Lavanya; Wipfli, Florine; Lone, Museer A; Hornemann, Thorsten (2025). Long Chain Base Profiling with Multiple Reaction Monitoring Mass Spectrometry. In: Giera, Martin; Elena, Sánchez-López. Clinical Metabolomics : Methods and Protocols. New York, NY: Springer (Bücher), 209-223.

2024

Barranco, Isabel; Almiñana, Carmen; Parra, Ana; Martínez-Diaz, Pablo; Lucas, Xiomara; Bauersachs, Stefan; Roca, Jordi (2024). RNA profiles differ between small and large extracellular vesicle subsets isolated from porcine seminal plasma. BMC Genomics, 25(1):1250.

Greene, Carol L; Saenz-Ayala, Sofia; Strovel, Erin T; Rossignol, Francis; Ferreira, Carlos R; Blau, Nenad (2024). Clinical and Biochemical Footprints of Inherited Metabolic Diseases : XVII. Dysmorphisms. Molecular Genetics and Metabolism, 144(1):109001.

Schmid, Cosima M; Gregor, Anne; Ruiz, Anna; Manso Bazús, Carmen; Herman, Isabella; Ammouri, Farah; Kotzaeridou, Urania; McNiven, Vanda; Dupuis, Lucie; Steindl, Katharina; Begemann, Anaïs; Rauch, Anita; Suter, Aude-Annick; Isidor, Bertrand; Mercier, Sandra; Nizon, Mathilde; Cogné, Benjamin; Deb, Wallid; Besnard, Thomas; Haack, Tobias B; Falb, Ruth J; Müller, Amelie J; Linden, Tobias; Haldeman-Englert, Chad R; Ockeloen, Charlotte W; Mattioli, Francesca; Reymond, Alexandre; Ibrahim, Nazia; Naz, Shagufta; Lacaze, Elodie; Bassetti, Jennifer Alisha; Hoefele, Julia; Brunet, Theresa; Riedhammer, Korbinian M; Elloumi, Houda Z; Person, Richard; Zou, Fanggeng; Kahle, Juliette J; Cremer, Kirsten; Schmidt, Axel; Delrue, Marie-Ange; Almeida, Pedro M; Ramos, Fabiana; Srivastava, Siddharth; Quinlan, Aisling; Robertson, Stephen; Manka, Eva; Kuechler, Alma; Spranger, Stephanie; Nowaczyk, Malgorzata J M; Elshafie, Reem M; Alsharhan, Hind; Hillman, Paul R; Dunnington, Leslie A; Braakman, Hilde M H; McKee, Shane; Moresco, Angelica; Ignat, Andrea-Diana; Newbury-Ecob, Ruth; Banneau, Guillaume; Patat, Olivier; Kuerbitz, Jeffrey; Rzucidlo, Susan; Sell, Susan S; Gordon, Patricia; Schuhmann, Sarah; Reis, André; Halleb, Yosra; Stoeva, Radka; Keren, Boris; Al Masseri, Zainab; Tumer, Zeynep; Hammer-Hansen, Sophia; Krüger Sølyst, Sofus; Steigerwald, Connolly G; Abreu, Nicolas J; Faust, Helene; Müller-Nedebock, Amica; Tran Mau-Them, Frédéric; Sticht, Heinrich; Zweier, Christiane (2024). Further delineation of the SCAF4-associated neurodevelopmental disorder. European Journal of Human Genetics:Epub ahead of print.

Fedorca, Ancuta; Mergeay, Joachim; Akinyele, Adejoke O; Albayrak, Tamer; Biebach, Iris; Brambilla, Alice; Burger, Pamela A; Buzan, Elena; Curik, Ino; Gargiulo, Roberta; Godoy, José A; González‐Martínez, Santiago C; Grossen, Christine; Heuertz, Myriam; Hoban, Sean; Howard‐McCombe, Jo; Kachamakova, Maria; Klinga, Peter; Köppä, Viktoria; Neugebauer, Elenora; Paz‐Vinas, Ivan; Pearman, Peter B; Pérez‐Sorribes, Laia; Rinkevich, Baruch; Russo, Isa‐Rita M; Theraroz, Adélaïde; Thomas, Nia E; Westergren, Marjana; Winter, Sven; Laikre, Linda (2024). Dealing With the Complexity of Effective Population Size in Conservation Practice. Evolutionary Applications, 17(12):e70031.

Sutter, Charlotte; Haas, Cordula; Bode, Peter K; Neubauer, Jacqueline; Dyrberg Andersen, Jeppe (2024). Exploratory DNA methylation analysis in post-mortem heart tissue of sudden unexplained death. Clinical Epigenetics, 16(1):167.

Snoeck, Simon; Johanndrees, Oliver; Nürnberger, Thorsten; Zipfel, Cyril (2024). Plant pattern recognition receptors: from evolutionary insight to engineering. Nature Reviews. Genetics:Epub ahead of print.

Wang, Baihui; Luo, Qiang; Medalia, Ohad (2024). Lamins and chromatin join forces. Advances in Biological Regulation:Epub ahead of print.

Campbell, C Ryan; Manser, Marta; Shiratori, Mari; Williams, Kelly; Barreiro, Luis; Clutton‐Brock, Tim; Tung, Jenny (2024). A female‐biased gene expression signature of dominance in cooperatively breeding meerkats. Molecular Ecology, 33(21):e17467.

Bouchra Sakhi, Imene; De Combiens, Elise; Frachon, Nadia; Durussel, Fanny; Brideau, Gaelle; Nemazanyy, Ivan; Frère, Perrine; Thévenod, Frank; Lee, Wing-Kee; Zeng, Qinghe; Klein, Christophe; Lourdel, Stéphane; Bignon, Yohan (2024). A novel transgenic mouse model highlights molecular disruptions involved in the pathogenesis of Dent disease 1. Gene, 928:148766.

Beckers, Vicky; Endress, Mary; Baas, Pieter; Smets, Erik; Lens, Frederic (2024). Apocynaceae wood evolution matches key morphological innovations. American Journal of Botany, 111(11):e16436.

Marfurt, Svenja M; Chabanne, Delphine B H; Wittwer, Samuel; Bizzozzero, Manuela R; Allen, Simon J; Gerber, Livia; Nicholson, Krista; Krützen, Michael (2024). Demographic History and Adaptive Evolution of Indo‐Pacific Bottlenose Dolphins ($Tursiops$ $aduncus$) in Western Australia. Molecular Ecology, 33(22):e17555.

Kido, Jun; Haberle, Johannes; Tanaka, Toju; Nagao, Masayoshi; Wada, Yoichi; Numakura, Chikahiko; Bo, Ryosuke; Nyuzuki, Hiromi; Dateki, Sumito; Maruyama, Shinsuke; Murayama, Kei; Yoshida, Shinichiro; Nakamura, Kimitoshi (2024). Improved sensitivity and specificity for citrin deficiency using selected amino acids and acylcarnitines in the newborn screening. Journal of Inherited Metabolic Disease, 47(6):1134-1143.

Makris, Georgios; Veit, Lara; Rüfenacht, Véronique; Klassa, Sven; Zürcher, Nadia; Matsumoto, Shirou; Poms, Martin; Häberle, Johannes (2024). Expression and function of the urea cycle in widely-used hepatic cellular models. Journal of Inherited Metabolic Disease, 47(6):1228-1238.

Leitner, Lorenz; McCallin, Shawna (2024). Guiding phage therapy with genomic surveillance. Nature Microbiology, 9(11):2799-2800.

Leugger, Flurin; Schmidlin, Michel; Lüthi, Martina; Kontarakis, Zacharias; Pellissier, Loïc (2024). Scanning amplicons with CRISPR‐Dx detects endangered amphibians in environmental DNA. Molecular Ecology Resources, 24(8):e14009.

Willimann, Melanie; Grisch-Chan, Hiu Man; Rimann, Nicole; Rothgangl, Tanja; Hruzova, Martina; Schwank, Gerald; Thöny, Beat (2024). Therapeutic liver cell transplantation to treat murine PKU. Journal of Inherited Metabolic Disease, 47(6):1322-1335.

Schoenpflug, Lydia A; Nie, Yao; Sheikhzadeh, Fahime; Koelzer, Viktor H (2024). A Review on Federated Learning in Computational Pathology. Computational and Structural Biotechnology Journal, 23:3938-3945.

Xu, Yunpeng; Yin, Jiang-An; Shao, Zhiyong (2024). Editorial : Genetic and Molecular Mechanisms of Healthy Aging and Age-Related Diseases. Frontiers in Genetics, 15:1509961.

Dommann, Julian; Kerbl-Knapp, Jakob; Albertos Torres, Diana; Egli, Adrian; Keiser, Jennifer; Schneeberger, Pierre H H (2024). A novel barcoded nanopore sequencing workflow of high-quality, full-length bacterial 16S amplicons for taxonomic annotation of bacterial isolates and complex microbial communities. mSystems, 9(10):e0085924.

Tsang, Kara K; Lam, Margaret M C; Wick, Ryan R; Wyres, Kelly L; Bachman, Michael; Baker, Stephen; Barry, Katherine; Brisse, Sylvain; Campino, Susana; Chiaverini, Alexandra; Cirillo, Daniela Maria; Clark, Taane; Corander, Jukka; Corbella, Marta; Cornacchia, Alessandra; Cuénod, Aline; D'Alterio, Nicola; Di Marco, Federico; Donado-Godoy, Pilar; Egli, Adrian; Farzana, Refath; Feil, Edward J; Fostervold, Aasmund; Gorrie, Claire L; Hassan, Brekhna; Hetland, Marit Andrea Klokkhammer; Hoa, Le Nguyen Minh; Hoi, Le Thi; Howden, Benjamin; Ikhimiukor, Odion O; et al (2024). Diversity, functional classification and genotyping of SHV β-lactamases in Klebsiella pneumoniae. Microbial Genomics, 10(10):001294.

Figurek, Andreja; Jankovic, Nevena; Hall, Andrew M (2024). Quantitative Intravital Calcium Imaging in Mouse Kidney. In: Gorvin, Caroline M. Calcium signaling : Methods and Protocols. New York: Springer (Bücher), 187-193.

Feng, Maomao; Robinson, Serina; Qi, Weihong; Edwards, Arwyn; Stierli, Beat; van der Heijden, Marcel; Frey, Beat; Varliero, Gilda (2024). Microbial genetic potential differs among cryospheric habitats of the Damma glacier. Microbial Genomics, 10(10):001301.

Karakus, Umut; Sempere Borau, Milagros; Martínez-Barragán, Patricia; von Kempis, Josephine; Yildiz, Soner; Arroyo-Fernández, Laura M; Pohl, Marie O; Steiger, Julia A; Glas, Irina; Hunziker, Annika; García-Sastre, Adolfo; Stertz, Silke (2024). MHC class II proteins mediate sialic acid independent entry of human and avian H2N2 influenza A viruses. Nature Microbiology, 9(10):2626-2641.

Zhang, Yuepeng; Otte, Fabian; Stoeckle, Marcel; Thielen, Alexander; Däumer, Martin; Kaiser, Rolf; Kusejko, Katharina; Metzner, Karin J; Klimkait, Thomas (2024). HIV-1 diversity in viral reservoirs obtained from circulating T-cell subsets during early ART and beyond. PLoS Pathogens, 20(9):e1012526.

So, Raphaella W L; Amano, Genki; Stuart, Erica; Ebrahim Amini, Aeen; Aguzzi, Adriano; Collingridge, Graham L; Watts, Joel C (2024). α-Synuclein strain propagation is independent of cellular prion protein expression in a transgenic synucleinopathy mouse model. PLoS Pathogens, 20(9):e1012517.

Caredio, Davide; Koderman, Maruša; Frontzek, Karl J; Sorce, Silvia; Nuvolone, Mario; Bremer, Juliane; Mariutti, Giovanni; Schwarz, Petra; Madrigal, Lidia; Mitrovic, Marija; Sellitto, Stefano; Streichenberger, Nathalie; Scheckel, Claudia; Aguzzi, Adriano (2024). Prion diseases disrupt glutamate/glutamine metabolism in skeletal muscle. PLoS Pathogens, 20(9):e1012552.

de Combiens, Elise; Sakhi, Imene Bouchra; Lourdel, Stéphane (2024). A Focus on the Proximal Tubule Dysfunction in Dent Disease Type 1. Genes, 15(9):1175.

Rasmussen, Philip; Barkema, Herman W; Osei, Prince P; Taylor, James; Shaw, Alexandra P; Conrady, Beate; Chaters, Gemma; Muñoz, Violeta; Hall, David C; Apenteng, Ofosuhene O; Rushton, Jonathan; Torgerson, Paul R (2024). Global losses due to dairy cattle diseases: A comorbidity-adjusted economic analysis. Journal of Dairy Science, 107(9):6945-6970.

van Megen, Wouter H; de Baaij, Jeroen H F; Churchill, Gary A; Devuyst, Olivier; Hoenderop, Joost G J; Korstanje, Ron (2024). Genetic drivers of age-related changes in urinary magnesium excretion. Physiological Genomics, 56(9):634-647.

Cerrito, Paola; Cherian, Blessy E; Hu, Bin; Bromage, Timothy G (2024). Population differences in dental cementum growth rates: Implications for using cementum thickness as a method for age estimation. American journal of biological anthropology, 185(1):e24985.

Cabrera, Luz E; Jokiranta, Suvi T; Mäki, Sanna; Miettinen, Simo; Kant, Ravi; Kareinen, Lauri; Sironen, Tarja; Pietilä, Jukka-Pekka; Kantele, Anu; Kekäläinen, Eliisa; Lindgren, Hanna; Mattila, Pirkko; Kipar, Anja; Vapalahti, Olli; Strandin, Tomas (2024). The assembly of neutrophil inflammasomes during COVID-19 is mediated by type I interferons. PLoS Pathogens, 20(8):e1012368.

Neuner-Jehle, Nadia; Zeeb, Marius; Thorball, Christian W; Fellay, Jacques; Metzner, Karin J; Frischknecht, Paul; Neumann, Kathrin; Leeman, Christine; Rauch, Andri; Stöckle, Marcel; Huber, Michael; Perreau, Matthieu; Bernasconi, Enos; Notter, Julia; Hoffmann, Matthias; Leuzinger, Karoline; Günthard, Huldrych F; Pasin, Chloé; Kouyos, Roger D; Swiss HIV Cohort Study (SHCS) (2024). Using viral diversity to identify HIV-1 variants under HLA-dependent selection in a systematic viral genome-wide screen. PLoS Pathogens, 20(8):e1012385.

Tatham, Lee; Kipar, Anja; Sharp, Jo; Kijak, Edyta; Herriott, Joanne; Neary, Megan; Box, Helen; Gallardo Toledo, Eduardo; Valentijn, Anthony; Cox, Helen; Pertinez, Henry; Curley, Paul; Arshad, Usman; Rajoli, Rajith Kumar Reddy; Rannard, Steve; Stewart, James P; Owen, Andrew (2024). Ronapreve (REGN-CoV; casirivimab and imdevimab) reduces the viral burden and alters the pulmonary response to the SARS-CoV-2 Delta variant (B.1.617.2) in K18-hACE2 mice using an experimental design reflective of a treatment use case. Microbiology Spectrum, 12(8):e0391623.

Brambilla, Alice; Zehnder, Noel; Bassano, Bruno; Rossi, Luca; Grossen, Christine (2024). Genetic evidence of a hybrid swarm between Alpine ibex (Capra ibex) and domestic goat (C. hircus). Evolutionary Applications, 17(8):e13761.

Meleshko, Olena; Martin, Michael D; Flatberg, Kjell Ivar; Stenøien, Hans K; Korneliussen, Thorfinn Sand; Szövényi, Péter; Hassel, Kristian (2024). Linked Selection and Gene Density Shape Genome‐Wide Patterns of Diversification in Peatmosses. Evolutionary Applications, 17(8):e13767.

Potente, Giacomo; Yousefi, Narjes; Keller, Barbara; Mora‐Carrera, Emiliano; Szövényi, Péter; Conti, Elena (2024). The $Primula$ $edelbergii$ $S$‐locus is an example of a jumping supergene. Molecular Ecology Resources, 24(6):e13988.

Dos Anjos Souza, Vinícius Ribeiro; Vivan, Lavínia; Seffrin, Aldo; Vallini, Lucca; de Paula Domingos, Fabio; de Lira, Claudio Andre Barbosa; Vancini, Rodrigo Luiz; Weiss, Katja; Rosemann, Thomas; Knechtle, Beat; Andrade, Marilia Santos (2024). Impact of aging on maximal oxygen uptake in female runners and sedentary controls. Experimental Gerontology, 193:112476.

Bracha, Shahar; Johnson, Hannah J; Pranckevicius, Nicole A; Catto, Francesca; Economides, Athena E; Litvinov, Sergey; Hassi, Karoliina; Rigoli, Marco Tullio; Cheroni, Cristina; Bonfanti, Matteo; Valenti, Alessia; Stucchi, Sarah; Attreya, Shruti; Ross, Paul D; Walsh, Daniel; Malachi, Nati; Livne, Hagay; Eshel, Reut; Krupalnik, Vladislav; Levin, Doron; Cobb, Stuart; Koumoutsakos, Petros; Caporale, Nicolò; Testa, Giuseppe; Aguzzi, Adriano; Koshy, Anita A; Sheiner, Lilach; Rechavi, Oded (2024). Engineering Toxoplasma gondii secretion systems for intracellular delivery of multiple large therapeutic proteins to neurons. Nature Microbiology, 9(8):2051-2072.

Seth-Smith, Helena; Bommana, Sankhya; Dean, Deborah; Read, Timothy D; Marti, Hanna (2024). Chlamydia suis undergoes interclade recombination promoting Tet-island exchange. BMC Genomics, 25(1):724.

Steffen, Fabio D; Cunha, Richard A; Sigel, Roland K O; Börner, Richard (2024). FRET-guided modeling of nucleic acids. Nucleic Acids Research, 52(13):e59.

Dietze, Anja; Neyer, Peter J; Speth, Marlene M; Metzler, Philipp; Elicin, Olgun; Balermpas, Panagiotis; Aebersold, Daniel M; Riesterer, Oliver; Stieb, Sonja (2024). Therapy-Associated Saliva and Taste change Evaluation (TASTE) in head & neck cancer patients undergoing radiotherapy: a study protocol. BMC Cancer, 24(1):865.

Wetzstein, Nils; Diricks, Margo; Anton, Thomas B; Andres, Sönke; Kuhns, Martin; Kohl, Thomas A; Schwarz, Carsten; Lewin, Astrid; Kehrmann, Jan; Kahl, Barbara C; Schmidt, Annika; Zimmermann, Stefan; Jansson, Moritz K; Baron, Sophie A; Schulthess, Bettina; Hogardt, Michael; Friesen, Inna; Niemann, Stefan; Wichelhaus, Thomas A (2024). Clinical and genomic features of Mycobacterium avium complex: a multi-national European study. Genome Medicine, 16(1):86.

Himmelreich, Nastassja; Ramón-Maiques, Santiago; Navarrete, Rosa; Castejon-Fernandez, Natalia; Garbade, Sven F; Martinez, Aurora; Desviat, Lourdes R; Pérez, Belén; Blau, Nenad (2024). Significance of Utilizing in Silico Structural Analysis and Phenotypic Data to Characterize Phenylalanine Hydroxylase Variants : A PAH Landscape. Molecular Genetics and Metabolism, 142(3):108514.

Bizzozzero, Manuela R; Altermatt, Florian; Cicciarella, Riccardo; Walser, Jean‐Claude; Willems, Erik P; Krützen, Michael (2024). Enhancing environmental DNA metabarcoding from marine ecosystems: Impact of filter type, storage method, and storage time on the assessment of fish alpha and beta diversity. Environmental DNA, 6(3):e570.

Rigoux, Lionel; Stephan, Klaas E; Petzschner, Frederike H (2024). Beliefs, compulsive behavior and reduced confidence in control. PLoS Computational Biology, 20(6):e1012207.

Yancoskie, Michelle N; Khaleghi, Reihaneh; Gururajan, Anirvinya; Raghunathan, Aadarsh; Gupta, Aryan; Diethelm, Sarah; Maritz, Corina; Sturla, Shana J; Krishnan, Marimuthu; Naegeli, Hanspeter (2024). ASH1L guards $cis$-regulatory elements against cyclobutane pyrimidine dimer induction. Nucleic Acids Research, 52(14):8254-8270.

Bhatia, Sonal; Le Cam, Yann; Carrion, Juan; Diamond, Lauren; Fennessy, Paul; Gassman, Safiyya; Gutzwiller, Felix; Kagan, Stephen; Pankevich, Diana; Young Maloney, Jennifer; Mahadev, Nitin; Schulz, Martin; Wong-Rieger, Durhane; Morgese, Paolo (2024). Strengthening health systems for access to gene therapy in rare genetic disorders. Molecular Therapy - Methods & Clinical Development, 32(2):101220.

Blackman, Rosetta; Couton, Marjorie; Keck, François; Kirschner, Dominik; Carraro, Luca; Cereghetti, Eva; Perrelet, Kilian; Bossart, Raphael; Brantschen, Jeanine; Zhang, Yan; Altermatt, Florian (2024). Environmental DNA: The next chapter. Molecular Ecology, 33(11):e17355.

Meier-Abt, Fabienne; Kraemer, Dennis; Braun, Nils; Reinehr, Michael; Stutz-Grunder, Eveline; Steindl, Katharina; Rauch, Anita (2024). Further evidence that the neurodevelopmental gene FBXW7 predisposes to Wilms tumor. American Journal of Medical Genetics. Part A, 194(6):e63528.

Caraffi, Stefano Giuseppe; van der Laan, Liselot; Rooney, Kathleen; Trajkova, Slavica; Zuntini, Roberta; Relator, Raissa; Haghshenas, Sadegheh; Levy, Michael A; Baldo, Chiara; Mandrile, Giorgia; Lauzon, Carolyn; Cordelli, Duccio Maria; Ivanovski, Ivan; Fetta, Anna; Sukarova, Elena; Brusco, Alfredo; Pavinato, Lisa; Pullano, Verdiana; Zollino, Marcella; McConkey, Haley; Tartaglia, Marco; Ferrero, Giovanni Battista; Sadikovic, Bekim; Garavelli, Livia (2024). Identification of the DNA methylation signature of Mowat-Wilson syndrome. European Journal of Human Genetics, 32(6):619-629.

Marash, Iftah; Leibman-Markus, Meirav; Gupta, Rupali; Israeli, Alon; Teboul, Naama; Avni, Adi; Ori, Naomi; Bar, Maya (2024). Abolishing ARF8A activity promotes disease resistance in tomato. Plant Science, 343:112064.

Hamdi, Meriem; Sánchez, José María; Fernandez-Fuertes, Beatriz; Câmara, Diogo Ribeiro; Bollwein, Heinrich; Rizos, Dimitrios; Bauersachs, Stefan; Almiñana, Carmen (2024). Oviductal extracellular vesicles miRNA cargo varies in response to embryos and their quality. BMC Genomics, 25(1):520.

Phaniraj, Nikhil; Brügger, Rahel K; Burkart, Judith M (2024). Marmosets mutually compensate for differences in rhythms when coordinating vigilance. PLoS Computational Biology, 20(5):e1012104.

Böck, Desirée; Revers, Ilma M; Bomhof, Anastasia S J; Hillen, Anne E J; Boeijink, Claire; Kissling, Lucas; Egli, Sabina; Moreno-Mateos, Miguel A; van der Knaap, Marjo S; van Til, Niek P; Schwank, Gerald (2024). In vivo base editing of a pathogenic Eif2b5 variant improves vanishing white matter phenotypes in mice. Molecular Therapy, 32(5):1328-1343.

Ng, Bobby G; Freeze, Hudson H; Himmelreich, Nastassja; Blau, Nenad; Ferreira, Carlos R (2024). Clinical and biochemical footprints of congenital disorders of glycosylation: Proposed nosology. Molecular Genetics and Metabolism, 142(1):108476.

Tokatly Latzer, Itay; Bertoldi, Mariarita; Blau, Nenad; DiBacco, Melissa L; Elsea, Sarah H; García-Cazorla, Àngels; Gibson, K Michael; Gropman, Andrea L; Hanson, Ellen; Hoffman, Carolyn; Jeltsch, Kathrin; Juliá-Palacios, Natalia; Knerr, Ina; Lee, Henry H C; Malaspina, Patrizia; McConnell, Alice; Opladen, Thomas; Oppebøen, Mari; Rotenberg, Alexander; Walterfang, Mark; Wang-Tso, Lee; Wevers, Ron A; Roullet, Jean-Baptiste; Pearl, Phillip L (2024). Consensus guidelines for the diagnosis and management of succinic semialdehyde dehydrogenase deficiency. Molecular Genetics and Metabolism, 142(1):108363.

Trefz, Friedrich; Frauendienst-Egger, Georg; Dienel, Gerald; Cannet, Claire; Schmidt-Mader, Brigitte; Haas, Dorothea; Blau, Nenad; Himmelreich, Nastassja; Spraul, Manfred; Freisinger, Peter; Dobrowolski, Steven; Berg, Daniela; Pilotto, Andrea (2024). Does hyperphenylalaninemia induce brain glucose hypometabolism? Cerebral spinal fluid findings in treated adult phenylketonuric patients. Molecular Genetics and Metabolism, 142(1):108464.

Chen, Liang; Li, Haotong; Liu, Xiaorui; Zhang, Ningning; Wang, Kui; Shi, Anteng; Gao, Hang; Akdis, Deniz; Saguner, Ardan M; Xu, Xinjie; Osto, Elena; van de Veen, Willem; Li, Guangyu; Bayés-Genís, Antoni; Duru, Firat; Song, Jiangping; Li, Xiangjie; Hu, Shengshou (2024). PBX/Knotted 1 homeobox-2 (PKNOX2) is a novel regulator of myocardial fibrosis. Signal Transduction and Targeted Therapy, 9(1):94.

Hannula, Liina; Kuivanen, Suvi; Lasham, Jonathan; Kant, Ravi; Kareinen, Lauri; Bogacheva, Mariia; Strandin, Tomas; Sironen, Tarja; Hepojoki, Jussi; Sharma, Vivek; Saviranta, Petri; Kipar, Anja; Vapalahti, Olli; Huiskonen, Juha T; Rissanen, Ilona (2024). Nanobody engineering for SARS-CoV-2 neutralization and detection. Microbiology Spectrum, 12(4):e0419922.

Schmidt, Robin; Dufresnes, Christophe; Krištín, Anton; Künzel, Sven; Vences, Miguel; Hawlitschek, Oliver (2024). Phylogenetic insights into Central European Chorthippus and Pseudochorthippus (Orthoptera: Acrididae) species using ddRADseq data. Molecular Phylogenetics and Evolution, 193:108012.

Smith, Ellery; Paloots, Rahel; Giagkos, Dimitris; Baudis, Michael; Stockinger, Kurt (2024). Data-driven information extraction and enrichment of molecular profiling data for cancer cell lines. Bioinformatics advances, 4(1):vbae045.

Thieme, Michael; Minadakis, Nikolaos; Himber, Christophe; Keller, Bettina; Xu, Wenbo; Rutowicz, Kinga; Matteoli, Calvin; Böhrer, Marcel; Rymen, Bart; Laudencia-Chingcuanco, Debbie; Vogel, John P; Sibout, Richard; Stritt, Christoph; Blevins, Todd; Roulin, Anne C (2024). Transposition of HOPPLA in siRNA-deficient plants suggests a limited effect of the environment on retrotransposon mobility in Brachypodium distachyon. PLoS Genetics, 20(3):e1011200.

Khalfi, Pierre; Denis, Zoé; McKellar, Joe; Merolla, Giovanni; Chavey, Carine; Ursic-Bedoya, José; Soppa, Lena; Szirovicza, Leonora; Hetzel, Udo; Dufourt, Jeremy; Leyrat, Cedric; Goldmann, Nora; Goto, Kaku; Verrier, Eloi; Baumert, Thomas F; Glebe, Dieter; Courgnaud, Valérie; Gregoire, Damien; Hepojoki, Jussi; Majzoub, Karim (2024). Comparative analysis of human, rodent and snake deltavirus replication. PLoS Pathogens, 20(3):e1012060.

Ren, Wuwei; Ni, Ruiqing (2024). Noninvasive Visualization of Amyloid-Beta Deposits in Alzheimer’s Amyloidosis Mice via Fluorescence Molecular Tomography Using Contrast Agent. In: Perneczky, Robert. Biomarkers for Alzheimer’s Disease Drug Development. New York, NY: Springer, 271-285.

Wong, Sheila Suet-Na; Yuen, Liz Yuet-Ping; Kan, Elaine; Blau, Nenad; Rodenburg, Richard; Lam, Ching-wan; Wong, Virginia Chun-Nei; Mochel, Fanny; Wevers, Ron A; Fung, Cheuk-Wing (2024). CYP2U1: An emerging treatable neurometabolic disease with cerebral folate deficiency in 2 Chinese brothers. Molecular Genetics and Metabolism Reports, 38:101023.

Blau, Nenad (2024). Estimating the prevalence of ultra-rare inherited metabolic disorders: Aromatic amino acid decarboxylase (AADC) deficiency. Molecular Genetics and Metabolism, 141(3):108150.

Schiestl, Florian P (2024). Is experimental evolution relevant for botanical research? American Journal of Botany, 111(3):e16296.

Malla, Sudhir B; Byrne, Ryan M; Lafarge, Maxime W; Corry, Shania M; Fisher, Natalie C; Tsantoulis, Petros K; Mills, Megan L; Ridgway, Rachel A; Lannagan, Tamsin R M; Najumudeen, Arafath K; Gilroy, Kathryn L; Amirkhah, Raheleh; Maguire, Sarah L; Mulholland, Eoghan J; Belnoue-Davis, Hayley L; Grassi, Elena; Viviani, Marco; Rogan, Emily; Redmond, Keara L; Sakhnevych, Svetlana; McCooey, Aoife J; Bull, Courtney; Hoey, Emily; Sinevici, Nicoleta; Hall, Holly; Ahmaderaghi, Baharak; Domingo, Enric; Blake, Andrew; Richman, Susan D; Isella, Claudio; Koelzer, Viktor H; et al; SCORT consortium (2024). Pathway Level Subtyping Identifies a Slow-Cycling Biological Phenotype Associated with Poor Clinical Outcomes in Colorectal Cancer. Nature Genetics, 56(3):458-472.

Klinnert, Sarah; Schenkel, Corinne D; Freitag, Patrick C; Günthard, Huldrych F; Plückthun, Andreas; Metzner, Karin J (2024). Targeted shock-and-kill HIV-1 gene therapy approach combining CRISPR activation, suicide gene tBid and retargeted adenovirus delivery. Gene Therapy, 31(3-4):74-84.

Finocchio, Giada; Koopal, Balwina; Potocnik, Ana; Heijstek, Clint; Westphal, Adrie H; Jinek, Martin; Swarts, Daan C (2024). Target DNA-dependent activation mechanism of the prokaryotic immune system SPARTA. Nucleic Acids Research, 52(4):2012-2029.

Rupasinghe, Meneka; Bersaglieri, Cristiana; Leslie Pedrioli, Deena M; Pedrioli, Patrick Ga; Panatta, Martina; Hottiger, Michael O; Cinelli, Paolo; Santoro, Raffaella (2024). PRAMEL7 and CUL2 decrease NuRD stability to establish ground-state pluripotency. EMBO Reports, 25(3):1453-1468.

Steg, Leonard C; Jaspers, Ellen; Alshanbayeva, Anar; Arzate-Meija, Rodrigo G; Dimitriu, Maria A; Gapp, Katharina; Kourouma, Lola M; Uzel, Kerem; Mansuy, Isabelle M (2024). Symposium summary: epigenetic inheritance—impact for biology and society 23–25 August 2023, Zürich, Switzerland. Environmental Epigenetics, 10(1):dvae002.

Benvenga, Vanni; Cuénod, Aline; Purushothaman, Srinithi; Dasen, Gottfried; Weisser, Maja; Bassetti, Stefano; Roloff, Tim; Siegemund, Martin; Heininger, Ulrich; Bielicki, Julia; Wehrli, Marianne; Friderich, Paul; Frei, Reno; Widmer, Andreas; Herzog, Kathrin; Fankhauser, Hans; Nolte, Oliver; Bodmer, Thomas; Risch, Martin; Dubuis, Olivier; Pranghofer, Sigrid; Calligaris-Maibach, Romana; Graf, Susanne; Perreten, Vincent; Seth-Smith, Helena M B; Egli, Adrian (2024). Historic methicillin-resistant Staphylococcus aureus: expanding current knowledge using molecular epidemiological characterization of a Swiss legacy collection. Genome Medicine, 16(1):23.

Camenzind, Marcela; Koller, Teresa; Armbruster, Cygni; Jung, Esther; Brunner, Susanne; Herren, Gerhard; Keller, Beat (2024). Breeding for durable resistance against biotrophic fungal pathogens using transgenes from wheat. Molecular Breeding, 44(2):8.

Nevado, Bruno; Atchison, Guy W; Bridges, Edwin L; Orzell, Steve; Filatov, Dmitry; Hughes, Colin E (2024). Pleistocene diversification of unifoliolate-leaved Lupinus (Leguminosae: Papilionoideae) in Florida. Molecular Ecology, 33(3):e17232.

Chen, Jiarui; Lu, Ronald Siyi; Diaz-Canestro, Candela; Song, Erfei; Jia, Xi; Liu, Yan; Wang, Cunchuan; Cheung, Cynthia K Y; Panagiotou, Gianni; Xu, Aimin (2024). Distinct Changes in Serum Metabolites and Lipid Species in the Onset and Progression of NAFLD in Obese Chinese. Computational and Structural Biotechnology Journal, 23:791-800.

Erkner, Estelle; Hentrich, Thomas; Schairer, Rebekka; Fitzel, Rahel; Secker-Grob, Kathy-Ann; Jeong, Johan; Keppeler, Hildegard; Korkmaz, Fulya; Schulze-Hentrich, Julia M; Lengerke, Claudia; Schneidawind, Dominik; Schneidawind, Corina (2024). The RORɣ/SREBP2 pathway is a master regulator of cholesterol metabolism and serves as potential therapeutic target in t(4;11) leukemia. Oncogene, 43(4):281-293.

Mai, Dat; Jahn, Ana; Murray, Tara; Morikubo, Michael; Lim, Pamelia N; Cervantes, Maritza M; Pham, Linh K; Nemeth, Johannes; Urdahl, Kevin; Diercks, Alan H; Aderem, Alan; Rothchild, Alissa C (2024). Exposure to Mycobacterium remodels alveolar macrophages and the early innate response to Mycobacterium tuberculosis infection. PLoS Pathogens, 20(1):e1011871.

Hofer, Cyrill; Wälchli, Denise; Moncadas, Lucas Serra; Rain-Franco, Angel; Andrei, Adrian-Stefan (2024). A high-quality genome of an undescribed Flavobacterium species uncovered using Q20+ Nanopore chemistry. Microbiology Resource Announcements, 13(1):online.

Mastall, Maximilian; Roth, Patrick; Bink, Andrea; Fischer Maranta, Angela; Läubli, Heinz; Hottinger, Andreas Felix; Hundsberger, Thomas; Migliorini, Denis; Ochsenbein, Adrian; Seystahl, Katharina; Imbach, Lukas; Hortobágyi, Tibor; Held, Leonhard; Weller, Michael; Wirsching, Hans-Georg (2024). A phase Ib/II randomized, open-label drug repurposing trial of glutamate signaling inhibitors in combination with chemoradiotherapy in patients with newly diagnosed glioblastoma: the GLUGLIO trial protocol. BMC Cancer, 24(1):82.

Martinez, Michael; Harding, Cary O; Schwank, Gerald; Thöny, Beat (2024). State-of-the-art 2023 on gene therapy for phenylketonuria. Journal of Inherited Metabolic Disease, 47(1):80-92.

Ruchti, Fiorella; Tuor, Meret; Mathew, Liya; McCarthy, Neil E; LeibundGut-Landmann, Salomé (2024). γδ T cells respond directly and selectively to the skin commensal yeast Malassezia for IL-17-dependent fungal control. PLoS Pathogens, 20(1):e1011668.

Jungfer, Kenny; Sigg, Annina; Jinek, Martin (2024). Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2. Nucleic Acids Research, 52(1):462-473.

SIB Swiss Institute of Bioinformatics RDF Group Members (2024). The SIB Swiss Institute of Bioinformatics Semantic Web of data. Nucleic Acids Research, 52(D1):D44-D51.

Sollier, Julie; Basler, Marek; Broz, Petr; Dittrich, Petra S; Drescher, Knut; Egli, Adrian; Harms, Alexander; Hierlemann, Andreas; Hiller, Sebastian; King, Carolyn G; McKinney, John D; Moran-Gilad, Jacob; Neher, Richard A; Page, Malcolm G P; Panke, Sven; Persat, Alexandre; Picotti, Paola; Rentsch, Katharina M; Rivera-Fuentes, Pablo; Sauer, Uwe; Stolz, Daiana; Tschudin-Sutter, Sarah; van Delden, Christian; van Nimwegen, Erik; Veening, Jan-Willem; Zampieri, Mattia; Zinkernagel, Annelies S; Khanna, Nina; Bumann, Dirk; Jenal, Urs; et al (2024). Revitalizing antibiotic discovery and development through in vitro modelling of in-patient conditions. Nature Microbiology, 9(1):1-3.

Jarzebska, Natalia Teresa; Frei, Julia; Mellett, Mark; Kündig, Thomas M; Pascolo, Steve; Reichmuth, Andreas M (2024). A Basic Method for Formulating mRNA-Lipid Nanoparticle Vaccines in the Lab. In: Kamps, Thomas. RNA Vaccines : Methods and Protocols. Humana New York: Springer, 237-254.

González-Acosta, Daniel; Lopes, Massimo (2024). DNA replication and replication stress response in the context of nuclear architecture. Chromosoma, 133(1):57-75.

Frei, Julia; Jarzebska, Natalia Teresa; Mellett, Mark; Kündig, Thomas M; Pascolo, Steve; Reichmuth, Andreas M (2024). Design and Synthesis of Circular RNA Expression Vectors. In: Kramps, Thomas. RNA Vaccines : Methods and Protocol. Humana New York: Springer (Bücher), 205-215.

Olivares, Ingrid; Tusso, Sergio; José Sanín, María; de La Harpe, Marylaure; Loiseau, Oriane; Rolland, Jonathan; Salamin, Nicolas; Kessler, Michael; Shimizu, Kentaro K; Paris, Margot (2024). Hyper-Cryptic radiation of a tropical montane plant lineage. Molecular Phylogenetics and Evolution, 190:107954.

Rhodes, Jack; Zipfel, Cyril (2024). Identification of Bioactive Phytocytokines Using Transcriptomic Data and Plant Bioassays. In: Schaller, Andreas. Plant Peptide Hormones and Growth Factors. New York: Springer, 23-35.

Volkova, Yulia L; Jucht, Agnieszka E; Scholz, Carsten C (2024). Oxomer- and Reporter Gene-Based Analysis of FIH Activity in Cells. In: Gilkes, Daniele M. Oxomer-and Reporter Gene-Based Analysis of FIH Activity in Cells. Zürich, Switzerland: Springer, 249-264.

Gupta, Shibu; Guérin, Amandine; Herger, Aline; Hou, Xiaoyu; Schaufelberger, Myriam; Roulard, Romain; Diet, Anouck; Roffler, Stefan; Lefebvre, Valérie; Wicker, Thomas; Pelloux, Jérôme; Ringli, Christoph (2024). Growth-inhibiting effects of the unconventional plant APYRASE 7 of Arabidopsis thaliana influences the LRX/RALF/FER growth regulatory module. PLoS Genetics, 20(1):e1011087.

Dørum, Guro; Hänggi, Nadescha Viviane; Burri, Dario; Marti, Yael; Banemann, Regine; Kulstein, Galina; Courts, Cornelius; Gosch, Annica; Hadrys, Thorsten; Haas, Cordula; Neubauer, Jacqueline (2024). Selecting mRNA markers in blood for age estimation of the donor of a biological stain. Forensic Science International. Genetics, 68:102976.

El Hadad, Jasmina; Schreiner, Philipp; Vavricka, Stephan R; Greuter, Thomas (2024). The Genetics of Inflammatory Bowel Disease. Molecular Diagnosis & Therapy, 28(1):27-35.

Głogowski, Robert; Clauss, Marcus; Bełżecki, Grzegorz (2024). Biochemical properties and hydrolytic activity in the nutria (Myocastor coypus) digestive tract. Animal science and genetics, 20(1):3-10.

2023

Chanou, Anna; Weiβ, Matthias; Holler, Karoline; Sajid, Atiqa; Straub, Tobias; Krietsch, Jana; Sanchi, Andrea; Ummethum, Henning; Lee, Clare S K; Kruse, Elisabeth; Trauner, Manuel; Werner, Marcel; Lalonde, Maxime; Lopes, Massimo; Scialdone, Antonio; Hamperl, Stephan (2023). Single molecule MATAC-seq reveals key determinants of DNA replication origin efficiency. Nucleic Acids Research, 51(22):12303-12324.

Tröndle, Kevin; Rizzo, Ludovica; Pichler, Roman; Zimmermann, Stefan; Lienkamp, Soeren S (2023). Flow induces common and specific transcriptional changes in renal tubular epithelial cells involving the PI3K pathway. FASEB Journal, 38(1):e23329.

Erdem, Özge; de Graaff, Jurgen C; Hilty, Matthias P; Kraemer, Ulrike S; de Liefde, Inge I; van Rosmalen, Joost; Ince, Can; Tibboel, Dick; Kuiper, Jan Willem (2023). Microcirculatory Monitoring in Children with Congenital Heart Disease Before and After Cardiac Surgery. Journal of Cardiovascular Translational Research, 16(6):1333-1342.

Eichinger, Johanna; Zimmermann, Bettina; Elger, Bernice; McLennan, Stuart; Filges, Isabel; Koné, Insa (2023). ‘It’s a nightmare’: informed consent in paediatric genome-wide sequencing. A qualitative expert interview study from Germany and Switzerland. European Journal of Human Genetics, 31(12):1398-1406.

Nagyova, Emilia; Hoorntje, Edgar T; Te Rijdt, Wouter P; Bosman, Laurens P; Syrris, Petros; Protonotarios, Alexandros; Elliott, Perry M; Tsatsopoulou, Adalena; Mestroni, Luisa; Taylor, Matthew R G; Sinagra, Gianfranco; Merlo, Marco; Wada, Yuko; Horie, Minoru; Mogensen, Jens; Christensen, Alex H; Gerull, Brenda; Song, Lei; Yao, Yan; Fan, Siyang; Saguner, Ardan M; Duru, Firat; Koskenvuo, Juha W; Cruz Marino, Tania; Tichnell, Crystal; Judge, Daniel P; Dooijes, Dennis; Lekanne Deprez, Ronald H; Basso, Cristina; Pilichou, Kalliopi; et al (2023). A Systematic Analysis of the Clinical Outcome Associated with Multiple Reclassified Desmosomal Gene Variants in Arrhythmogenic Right Ventricular Cardiomyopathy Patients. Journal of Cardiovascular Translational Research, 16(6):1276-1286.

Dunlea, Eoghan; Crushell, Ellen; Cotter, Melanie; Blau, Nenad; Ferreira, Carlos R (2023). Clinical and Biochemical Footprints of Inherited Metabolic Disease. XVI. Hematological Abnormalities. Molecular Genetics and Metabolism, 140(4):107735.

Lutz, Stefanie; Bodenhausen, Natacha; Hess, Julia; Valzano-Held, Alain; Waelchli, Jan; Deslandes-Hérold, Gabriel; Schlaeppi, Klaus; van der Heijden, Marcel G A (2023). Soil microbiome indicators can predict crop growth response to large-scale inoculation with arbuscular mycorrhizal fungi. Nature Microbiology, 8(12):2277-2289.

Arango-Isaza, Epifanía; Aninao, María José; Campbell, Roberto; Martinez, Felipe I; Shimizu, Kentaro K; Barbieri, Chiara (2023). Bridging the gap: returning genetic results to indigenous communities in Latin America. Frontiers in Genetics, 14:1304974.

Ruiz-Babot, Gerard; Eceiza, Ariane; Abollo-Jiménez, Fernando; Malyukov, Maria; Carlone, Diana L; Borges, Kleiton; Da Costa, Alexandra Rodrigues; Qarin, Shamma; Matsumoto, Takuya; Morizane, Ryuji; Skarnes, William C; Ludwig, Barbara; Chapple, Paul J; Guasti, Leonardo; Storr, Helen L; Bornstein, Stefan R; Breault, David T (2023). Generation of glucocorticoid-producing cells derived from human pluripotent stem cells. Cell Reports Methods, 3(11):100627.

Kirschner, Dominik; Zhang, Yan; Zhong, Wenjun; Zhang, Xiaowei; Pellissier, Loïc; Altermatt, Florian (2023). Homogeneity in terrestrial land cover is reflected in fish diversity patterns in a Chinese river system. Environmental DNA, 5(6):1679-1690.

Dengler Haunreiter, Vanina; Tarnutzer, Andrea; Bär, Julian; von Matt, Manuela; Hertegonne, Sanne; Andreoni, Federica; Vulin, Clément; Künzi, Lisa; Menzi, Carmen; Kiefer, Patrick; Christen, Philipp; Vorholt, Julia A; Zinkernagel, Annelies S (2023). C-di-AMP levels modulate Staphylococcus aureus cell wall thickness, response to oxidative stress, and antibiotic resistance and tolerance. Microbiology Spectrum, 11(6):e0278823.

Wallace, Eric L; Goker-Alpan, Ozlem; Wilcox, William R; Holida, Myrl; Bernat, John; Longo, Nicola; Linhart, Aleš; Hughes, Derralynn A; Hopkin, Robert J; Tøndel, Camilla; Langeveld, Mirjam; Giraldo, Pilar; Pisani, Antonio; Germain, Dominique Paul; Mehta, Ankit; Deegan, Patrick B; Molnar, Maria Judit; Ortiz, Damara; Jovanovic, Ana; Muriello, Michael; Barshop, Bruce A; Kimonis, Virginia; Vujkovac, Bojan; Nowak, Albina; Geberhiwot, Tarekegn; Kantola, Ilkka; Knoll, Jasmine; Waldek, Stephen; Nedd, Khan; Karaa, Amel; et al (2023). Head-to-head trial of pegunigalsidase alfa versus agalsidase beta in patients with Fabry disease and deteriorating renal function: results from the 2-year randomised phase III BALANCE study. Journal of Medical Genetics:x-x.

Vokinger, Kerstin N; Glaus, Camille E G; Kesselheim, Aaron S (2023). Approval and therapeutic value of gene therapies in the US and Europe. Gene Therapy, 30(10-11):756-760.

Rossi, Alessandro; Basilicata, Simona; Borrelli, Melissa; Ferreira, Carlos R; Blau, Nenad; Santamaria, Francesca (2023). Clinical and Biochemical Footprints of Inherited Metabolic Diseases. XIII. Respiratory Manifestations. Molecular Genetics and Metabolism, 140(3):107655.

Schumann, Anke; Schultheiss, Ulla T; Ferreira, Carlos R; Blau, Nenad (2023). Clinical and Biochemical Footprints of Inherited Metabolic Diseases. XIV. Metabolic Kidney Diseases. Molecular Genetics and Metabolism, 140(3):107683.

Latzer, Itay Tokatly; Blau, Nenad; Ferreira, Carlos R; Pearl, Phillip L (2023). Clinical and Biochemical Footprints of Inherited Metabolic Diseases. XV. Epilepsies. Molecular Genetics and Metabolism, 140(3):107690.

Stolwijk, N N; Bosch, A M; Bouwhuis, N; Häberle, Johannes; van Karnebeek, C; van Spronsen, F J; Langeveld, M; Hollak, C E M (2023). Food or medicine? A European regulatory perspective on nutritional therapy products to treat inborn errors of metabolism. Journal of Inherited Metabolic Disease, 46(6):1017-1028.

Fazilaty, Hassan; Basler, Konrad (2023). Reactivation of embryonic genetic programs in tissue regeneration and disease. Nature Genetics, 55(11):1792-1806.

Buxboim, Amnon; Kronenberg-Tenga, Rafael; Salajkova, Sarka; Avidan, Nili; Shahak, Hen; Thurston, Alice; Medalia, Ohad (2023). Scaffold, mechanics and functions of nuclear lamins. FEBS letters, 597(22):2791-2805.

Winter, Yaroslav; Hilz, Max; Beuschlein, Felix; Tsukimura, Takahiro; Seifritz, Erich; Lenders, Malte; Brand, Eva; Hennermann, Julia B; Nowak, Albina (2023). Screening for health-related quality of life and its determinants in Fabry disease: A cross-sectional multicenter study. Molecular Genetics and Metabolism, 140(3):107692.

Cuénod, Aline; Agnetti, Jessica; Seth-Smith, Helena M B; Roloff, Tim; Wälchli, Denise; Shcherbakov, Dimitri; Akbergenov, Rashid; Tschudin-Sutter, Sarah; Bassetti, Stefano; Siegemund, Martin; Nickel, Christian H; Moran-Gilad, Jacob; Keys, Timothy G; Pflüger, Valentin; Thomson, Nicholas R; Egli, Adrian (2023). Bacterial genome-wide association study substantiates papGII of Escherichia coli as a major risk factor for urosepsis. Genome Medicine, 15(1):89.

Epp, Robert; Glück, Chaim; Binder, Nadine Felizitas; El Amki, Mohamad; Weber, Bruno; Wegener, Susanne; Jenny, Patrick; Schmid, Franca (2023). The role of leptomeningeal collaterals in redistributing blood flow during stroke. PLoS Computational Biology, 19(10):e1011496.

Kelbert, Lucien; Stevens, Marc J A; Horlbog, Jule Anna; Biggel, Michael; Stephan, Roger (2023). Completely assembled genome sequence of the florfenicol-resistant $Enterococcus faecalis$ strain 90_2023 isolated from a raw sausage imported from Italy to Switzerland. Microbiology Resource Announcements, 12(10):e0061023.

Hofer, Cyrill; Lingenhag, Seraina; Serra Moncadas, Lucas; Rain-Franco, Angel; Andrei, Adrian-Stefan (2023). Q20+ Nanopore sequencing data recover a high-quality Asticcacaulis sp. genome. Microbiology Resource Announcements, 12(10):online.

Sajibu, Sija; Sonder, Emanuel; Tiwari, Amit; Orjuela, Stephany; Parker, Hannah R; Frans, Olivier The; Gubler, Christoph; Marra, Giancarlo; Robinson, Mark D (2023). Validation of hypermethylated DNA regions found in colorectal cancers as potential aging-independent biomarkers of precancerous colorectal lesions. BMC Cancer, 23(1):998.

Guo, Longcheng; Wambui, Joseph; Wang, Chenhui; Muchaamba, Francis; Fernandez-Cantos, Maria Victoria; Broos, Jaap; Tasara, Taurai; Kuipers, Oscar P; Stephan, Roger (2023). Cesin, a short natural variant of nisin, displays potent antimicrobial activity against major pathogens despite lacking two C-terminal macrocycles. Microbiology Spectrum, 11(5):e0531922.

Scheier, T C; Franz, J; Boumasmoud, M; Andreoni, F; Chakrakodi, B; Duvnjak, B; Egli, A; Zingg, W; Ramette, A; Wolfensberger, A; Kouyos, R D; Brugger, S D (2023). Fourier-transform infrared spectroscopy for typing of vancomycin-resistant Enterococcus faecium: performance analysis and outbreak investigation. Microbiology Spectrum, 11(5):e0098423.

Li, Cheng; Czyz, Ewa A; Halitschke, Rayko; Baldwin, Ian T; Schaepman, Michael E; Schuman, Meredith Christine (2023). Evaluating potential of leaf reflectance spectra to monitor plant genetic variation. Plant Methods, 19(1):108.

Laetsch, Dominik R; Bisschop, Gertjan; Martin, Simon H; Aeschbacher, Simon; Setter, Derek; Lohse, Konrad (2023). Demographically explicit scans for barriers to gene flow using gIMble. PLoS Genetics, 19(10):e1010999.

Hartmann, K Patricia; van Gogh, Merel; Freitag, Patrick C; Kast, Florian; Nagy-Davidescu, Gabriela; Borsig, Lubor; Plückthun, Andreas (2023). FAP-retargeted Ad5 enables in vivo gene delivery to stromal cells in the tumor microenvironment. Molecular Therapy, 31(10):2914-2928.

Jerjen, C P; Kumaran, S J; Liesegang, Annette; Hall, E; Wichert, Brigitta; Haase, B (2023). Melanocortin-4 receptor and proopiomelanocortin: Candidate genes for obesity in domestic shorthair cats. Animal Genetics, 54(5):637-642.

Kiener, Sarah; Troyer, Heather; Ruvolo, Daniel; Grest, Paula; Soto, Sara; Letko, Anna; Jagannathan, Vidhya; Leeb, Tosso; Mauldin, Elizabeth A; Yang, Ching; Rostaher, Ana (2023). Independent COL17A1 Variants in Cats with Junctional Epidermolysis Bullosa. Genes, 14(10):1835.

Minadakis, Nikolaos; Williams, Hefin; Horvath, Robert; Caković, Danka; Stritt, Christoph; Thieme, Michael; Bourgeois, Yann; Roulin, Anne C (2023). The demographic history of the wild crop relative Brachypodium distachyon is shaped by distinct past and present ecological niches. Peer Community Journal, 3:e84.

Gramc, Martin; Monro, Surya; Stephenson, John; Streuli, Jürg Caspar (2023). Psychosocial Support for Parents, Infants, Children, and Adolescents with Variations of Sex Characteristics: Results from a Pan-European Survey. Behavioral Sciences, 14(9):832.

Eichenauer, Heike; Ehlert, Ulrike (2023). The association between prenatal famine, DNA methylation and mental disorders: a systematic review and meta-analysis. Clinical Epigenetics, 15(1):152.

Speicher, Philip; Fankhauser, Christian D; Lorch, Anja; Ardizzone, Davide; Helnwein, Simon; Hoch, Dennis; Hermanns, Thomas; Beyer, Jörg; Akhoundova, Dilara (2023). Excellent survival in relapsed stage I testicular cancer. BMC Cancer, 23(1):870.

Wang, Ke; Prüfer, Kay; Krause-Kyora, Ben; Childebayeva, Ainash; Schuenemann, Verena J; Coia, Valentina; Maixner, Frank; Zink, Albert; Schiffels, Stephan; Krause, Johannes (2023). High-coverage genome of the Tyrolean Iceman reveals unusually high Anatolian farmer ancestry. Cell Genomics, 3(9):100377.

Bonini, Chiara; Chapuis, Aude G; Hudecek, Michael; Guedan, Sonia; Magnani, Chiara; Qasim, Waseem (2023). Genome Editing in Engineered T Cells for Cancer Immunotherapy. Human Gene Therapy, 34(17-18):853-869.

Rastokina, Anastasia; Cebrián, Jorge; Mozafari, Negin; Mandel, Nicholas H; Smith, C I Edvard; Lopes, Massimo; Zain, Rula; Mirkin, Sergei M (2023). Large-scale expansions of Friedreich's ataxia GAA•TTC repeats in an experimental human system: role of DNA replication and prevention by LNA-DNA oligonucleotides and PNA oligomers. Nucleic Acids Research, 51(16):8532-8549.

Helmer, Stefanie M; Rogge, Alizé A; King, Ryan; Canella, Claudia; Pach, Daniel; Witt, Claudia M (2023). Effects of blended learning training for oncology physicians to advise their patients about complementary and integrative therapies: results from the multicenter cluster-randomized KOKON-KTO trial. BMC Cancer, 23(1):836.

Berková, Linda; Fazilaty, Hassan; Yang, Qiutan; Kubovčiak, Jan; Stastna, Monika; Hrckulak, Dusan; Vojtechova, Martina; Dalessi, Tosca; Brügger, Michael David; Hausmann, George; Liberali, Prisca; Korinek, Vladimir; Basler, Konrad; Valenta, Tomas (2023). Terminal differentiation of villus tip enterocytes is governed by distinct Tgfβ superfamily members. EMBO Reports, 24(9):e56454.

League Against Epilepsy Consortium on Complex Epilepsies; et al; Weller, Michael (2023). GWAS meta-analysis of over 29,000 people with epilepsy identifies 26 risk loci and subtype-specific genetic architecture. Nature Genetics, 55(9):1471-1482.

Couton, Marjorie; Viard, Frédérique; Altermatt, Florian (2023). Opportunities and inherent limits of using environmental DNA for population genetics. Environmental DNA, 5(5):1048-1064.

Greco, Benedetta; Caviglia, Stefania; Martinelli, Diego; Capitello, Teresa Grimaldi; Liccardo, Daniela; De Nictolis, Francesca; Pietrobattista, Andrea; Huemer, Martina; Piga, Simone; Olivieri, Giorgia; Spagnoletti, Gionata; Spada, Marco; Dionisi‐Vici, Carlo (2023). The impact of liver transplantation on health‐related quality of life in (acute) intoxication‐type inborn errors of metabolism. Journal of Inherited Metabolic Disease, 46(5):906-915.

Spiekerkoetter, Ute; Bick, David; Scott, Richard; Hopkins, Henrietta; Krones, Tanja; Gross, Edith Sky; Bonham, James R (2023). Genomic newborn screening: Are we entering a new era of screening? Journal of Inherited Metabolic Disease, 46(5):778-795.

Wong, Kim; Abascal, Federico; Ludwig, Latasha; Aupperle-Lellbach, Heike; Grassinger, Julia; Wright, Colin W; Allison, Simon J; Pinder, Emma; Phillips, Roger M; Romero, Laura P; Gal, Arnon; Roady, Patrick J; Pires, Isabel; Guscetti, Franco; Munday, John S; Peleteiro, Maria C; Pinto, Carlos A; Carvalho, Tânia; Cota, João; Du Plessis, Elizabeth C; Constantino-Casas, Fernando; Plog, Stephanie; Moe, Lars; de Brot, Simone; Bemelmans, Ingrid; Amorim, Renée Laufer; Georgy, Smitha R; Prada, Justina; del Pozo, Jorge; Heimann, Marianne; et al (2023). Cross-species oncogenomics offers insight into human muscle-invasive bladder cancer. Genome Biology, 24(1):191.

Bonner, Erin R; Dawood, Adam; Gordish-Dressman, Heather; Eze, Augustine; Bhattacharya, Surajit; Yadavilli, Sridevi; Mueller, Sabine; Waszak, Sebastian M; Nazarian, Javad (2023). Pan-cancer atlas of somatic core and linker histone mutations. n p j Genomic Medicine, 8(1):23.

Kaur, Jaspreet; Chandrashekar, Darshan S; Varga, Zsuzsanna; Sobottka, Bettina; Janssen, Emiel; Gandhi, Khanjan; Kowalski, Jeanne; Kiraz, Umay; Varambally, Sooryanarayana; Aneja, Ritu (2023). Whole-Exome Sequencing Reveals High Mutational Concordance between Primary and Matched Recurrent Triple-Negative Breast Cancers. Genes, 14(9):1690.

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Crowell, Helena L; Morillo Leonardo, Sarah X; Soneson, Charlotte; Robinson, Mark D (2023). The shaky foundations of simulating single-cell RNA sequencing data. Genome Biology, 24(1):62.

Han, Zhe; Andrs, Martin; Madhavan, Bindhu K; Kaymak, Serap; Sulaj, Alba; Kender, Zoltan; Kopf, Stefan; Kihm, Lars; Pepperkok, Rainer; Janscak, Pavel; Nawroth, Peter; Kumar, Varun (2023). The importance of nuclear RAGE-Mcm2 axis in diabetes or cancer-associated replication stress. Nucleic Acids Research, 51(5):2298-2318.

Biggel, Michael; Barmettler, Karen; Treier, Andrea; Muchaamba, Francis; Stephan, Roger (2023). Draft Genome Sequences of Two Escherichia albertii Isolates Collected from Healthy Pets in Switzerland. Microbiology Resource Announcements, 12(3):e0135622.

Stegmüller, Stefanie; Fraefel, Cornel; Kubacki, Jakub (2023). Genome Sequence of Alongshan Virus from Ixodes ricinus Ticks Collected in Switzerland. Microbiology Resource Announcements, 12(3):e0128722.

Reimer, Francesca; Bryan, Sarah; Legler, Karen; Karn, Thomas; Eppenberger-Castori, Serenella; Matschke, Jakob; Pereira-Veiga, Thais; Wikman, Harriet; Witzel, Isabell; Müller, Volkmar; Schmalfeldt, Barbara; Milde-Langosch, Karin; Schumacher, Udo; Stürken, Christine; Oliveira-Ferrer, Leticia (2023). The role of the desmosomal protein desmocollin 2 in tumour progression in triple negative breast cancer patients. Cancer Cell International, 23(1):47.

Hotz, Alrun; Kopp, Julia; Bourrat, Emmanuelle; Oji, Vinzenz; Süßmuth, Kira; Komlosi, Katalin; Bouadjar, Bakar; Tantcheva-Poór, Iliana; Hellström Pigg, Maritta; Betz, Regina C; Giehl, Kathrin; Schedel, Fiona; Weibel, Lisa; Schulz, Solveig; Stölzl, Dora V; Tadini, Gianluca; Demiral, Emine; Berggard, Karin; Zimmer, Andreas D; Alter, Svenja; Fischer, Judith (2023). Mutational Spectrum of the ABCA12 Gene and Genotype-Phenotype Correlation in a Cohort of 64 Patients with Autosomal Recessive Congenital Ichthyosis. Genes, 14(3):717.

Vormittag, Simone; Hüsler, Dario; Haneburger, Ina; Kroniger, Tobias; Anand, Aby; Prantl, Manuel; Barisch, Caroline; Maaß, Sandra; Becher, Dörte; Letourneur, François; Hilbi, Hubert (2023). Legionella- and host-driven lipid flux at LCV-ER membrane contact sites promotes vacuole remodeling. EMBO Reports, 24(3):e56007.

Johannessen, Helen; Hanson, Erin; Gill, Peter; Haas, Cordula; Bergseth, Erik Francisco; Ballantyne, Jack; Fonneløp, Ane Elida (2023). Body Fluid Identification in Samples Collected after Intimate and Social Contact: A Comparison of Two mRNA Profiling Methods and the Additional Information Gained by cSNP Genotypes. Genes, 14(3):636.

Lee, Olivia W; Rodrigues, Calvin; Lin, Shu-Hong; Luo, Wen; Jones, Kristine; Brown, Derek W; Zhou, Weiyin; Karlins, Eric; Khan, Sairah M; Baulande, Sylvain; Raynal, Virginie; Surdez, Didier; Reynaud, Stephanie; Rubio, Rebeca Alba; Zaidi, Sakina; Grossetête, Sandrine; Ballet, Stelly; Lapouble, Eve; Laurence, Valérie; Pierron, Gaelle; Gaspar, Nathalie; Corradini, Nadège; Marec-Bérard, Perrine; Rothman, Nathaniel; Dagnall, Casey L; Burdett, Laurie; Manning, Michelle; Wyatt, Kathleen; Yeager, Meredith; Chari, Raj; et al (2023). Targeted long-read sequencing of the Ewing sarcoma 6p25.1 susceptibility locus identifies germline-somatic interactions with EWSR1-FLI1 binding. American Journal of Human Genetics, 110(3):427-441.

Blackman, Rosetta C; Walser, Jean‐Claude; Rüber, Lukas; Brantschen, Jeanine; Villalba, Soraya; Brodersen, Jakob; Seehausen, Ole; Altermatt, Florian (2023). General principles for assignments of communities from eDNA: Open versus closed taxonomic databases. Environmental DNA, 5(2):326-342.

Salazar, Denise; Kloke, Karen M; Guerrero, Rubén Bonilla; Ferreira, Carlos R; Blau, Nenad (2023). Clinical and Biochemical Footprints of Inherited Metabolic Disorders. XI. Gastrointestinal Symptoms. Molecular Genetics and Metabolism, 138(3):107528.

Mütze, Ulrike; Gleich, Florian; Barić, Ivo; Baumgartner, Matthias R; Häberle, Johannes; Gautschi, Matthias; et al (2023). Impact of the SARS‐CoV ‐2 pandemic on the health of individuals with intoxication‐type metabolic diseases—Data from the E‐IMD consortium. Journal of Inherited Metabolic Disease, 46(2):220-231.

Schellhorn, Sebastian; Brücher, Dominik; Wolff, Natascha A; Schröer, Katrin; Sallard, Erwan; Mese, Kemal; Zhang, Wenli; Ehrke-Schulz, Eric; Thévenod, Frank; Plückthun, Andreas; Ehrhardt, Anja (2023). Targeting Oncolytic Adenoviruses to Cancer Cells Using a Designed Ankyrin Repeat Protein Lipocalin-2 Fusion Protein. Human Gene Therapy, 34(5-6):203-216.

Macnair, Will; Robinson, Mark (2023). SampleQC: robust multivariate, multi-cell type, multi-sample quality control for single-cell data. Genome Biology, 24(1):23.

Stefanini, Camilla; Csilléry, Katalin; Ulaszewski, Bartosz; Burczyk, Jarosław; Schaepman, Michael E; Schuman, Meredith Christine (2023). A novel synthesis of two decades of microsatellite studies on European beech reveals decreasing genetic diversity from glacial refugia. Tree Genetics & Genomes, 19(1):3.

Barbon, Carlotta; Grünherz, Lisanne; Schweizer, Riccardo; Lindenblatt, Nicole; Giovanoli, Pietro (2023). Botulinum toxin to improve facial expression in a patient with Urofacial (Ochoa) Syndrome. American Journal of Medical Genetics. Part A, 191(2):559-563.

Keck, François; Altermatt, Florian (2023). Management of DNA reference libraries for barcoding and metabarcoding studies with the R package refdb. Molecular Ecology Resources, 23(2):511-518.

Ghielmetti, Giovanni; Seth-Smith, Helena M B; Roloff, Tim; Cernela, Nicole; Biggel, Michael; Stephan, Roger; Egli, Adrian (2023). Whole-genome-based characterization of Campylobacter jejuni from human patients with gastroenteritis collected over an 18 year period reveals increasing prevalence of antimicrobial resistance. Microbial Genomics, 9(2):mgen000941.

Laganenka, Leanid; Lee, Jae-Woo; Malfertheiner, Lukas; Dieterich, Cora Lisbeth; Fuchs, Lea; Piel, Jörn; von Mering, Christian; Sourjik, Victor; Hardt, Wolf-Dietrich (2023). Chemotaxis and autoinducer-2 signalling mediate colonization and contribute to co-existence of Escherichia coli strains in the murine gut. Nature Microbiology, 8(2):204-217.

Peters, Katharina J; Gerber, Livia; Scheu, Luca; Cicciarella, Riccardo; Zoller, Joseph A; Fei, Zhe; Horvath, Steve; Allen, Simon J; King, Stephanie L; Connor, Richard C; Rollins, Lee Ann; Krützen, Michael (2023). An epigenetic DNA methylation clock for age estimates in Indo-Pacific bottlenose dolphins (Tursiops aduncus). Evolutionary Applications, 16(1):126-133.

Mora-Carrera, Emiliano; Stubbs, Rebecca L; Keller, Barbara; Léveillé‐Bourret, Étienne; de Vos, Jurriaan M; Szövényi, Péter; Conti, Elena (2023). Different molecular changes underlie the same phenotypic transition: Origins and consequences of independent shifts to homostyly within species. Molecular Ecology, 32(1):61-78.

Crowther, Lisa M; Poms, Martin; Zandl‐Lang, Martina; Abela, Lucia; Hartmann, Hans; Seiler, Michelle; Mathis, Déborah; Plecko, Barbara (2023). Metabolomics analysis of antiquitin deficiency in cultured human cells and plasma: Relevance to pyridoxine-dependent epilepsy. Journal of Inherited Metabolic Disease, 46(1):129-142.

Buch, Thorsten; Jerchow, Boris; Zevnik, Branko (2023). Practical Application of the 3Rs in Rodent Transgenesis. Methods in Molecular Biology, 2631:33-51.

Wang, Chunyang; Wojtynek, Matthias; Medalia, Ohad (2023). Structural investigation of eukaryotic cells: From the periphery to the interior by cryo-electron tomography. Advances in Biological Regulation, 87:100923.

Fiaschetti, G; Castelletti, D; Zoller, S; Schramm, A; Schroeder, C; Nagaishi, M; Stearns, D; Mittelbronn, M; Eggert, A; Westermann, F; Ohgaki, H; Shalaby, T; Pruschy, M; Arcaro, A; Grotzer, M A (2023). Correction: Bone morphogenetic protein-7 is a MYC target with prosurvival functions in childhood medulloblastoma. Oncogene, 42(2):168.

Peters, Tessa M A; Merx, Jona; Kooijman, Pieter C; Noga, Marek; de Boer, Siebolt; van Gemert, Loes A; Salden, Guido; Engelke, Udo F H; Lefeber, Dirk J; van Outersterp, Rianne E; Berden, Giel; Boltje, Thomas J; Artuch, Rafael; Pías-Peleteiro, Leticia; García-Cazorla, Ángeles; Barić, Ivo; Thöny, Beat; Oomens, Jos; Martens, Jonathan; Wevers, Ron A; Verbeek, Marcel M; Coene, Karlien L M; Willemsen, Michèl A A P (2023). Novel cerebrospinal fluid biomarkers of glucose transporter type 1 deficiency syndrome: Implications beyond the brain's energy deficit. Journal of Inherited Metabolic Disease, 46(1):66-75.

Weiler, Philipp; Van den Berge, Koen; Street, Kelly; Tiberi, Simone (2023). A Guide to Trajectory Inference and RNA Velocity. Methods in Molecular Biology, 2584:269-292.

Schweizer, Tiziano A; Hertegonne, Sanne; Vulin, Clément; Zinkernagel, Annelies S; Mairpady Shambat, Srikanth (2023). Antibacterial Neutrophil Effector Response: Ex Vivo Quantification of Regulated Cell Death Associated with Extracellular Trap Release. In: Nordenfelt, Pontus; Collin, Mattias. Bacterial Pathogenesis : Methods and Protocols. New York: Springer, 235-250.

Karakulak, Tülay; Szklarczyk, Damian; Saylan, Cemil Can; Moch, Holger; von Mering, Christian; Kahraman, Abdullah (2023). CanIsoNet: a database to study the functional impact of isoform switching events in diseases. Bioinformatics advances, 3(1):vbad050.

Huang, Qingyao; Baudis, Michael (2023). Candidate targets of copy number deletion events across 17 cancer types. Frontiers in Genetics, 13:1017657.

Welin, Amanda; Hüsler, Dario; Hilbi, Hubert (2023). Imaging Flow Cytometry of Legionella-Containing Vacuoles in Intact and Homogenized Wild-Type and Mutant Dictyostelium. In: Barteneva, Natasha; Vorobjev, Ivan. Spectral and Imaging Cytometry : Methods and Protocols. New York: Springer, 63-85.

2022

Callegari, Alessia; Quandt, Daniel; Nordmeyer, Johannes; Schubert, Stephan; Kramer, Peter; Knirsch, Walter; Kretschmar, Oliver (2022). Transcatheter Closure of Atrial Septal Defect with Carag Bioresorbable Septal Occluder™: First-in-Child Experience with 12-MonthFollow-Up. Journal of Interventional Cardiology, 2022:3476398.

Horvath, Gabriella A; Blau, Nenad; Ferreira, Carlos R (2022). Clinical and biochemical footprints of inherited metabolic disease. V. Cerebral palsy phenotypes. Molecular Genetics and Metabolism, 137(4):445-448.

Jönsson, Åsa Lina M; Hernando, Nati; Knöpfel, Thomas; Mogensen, Susie; Bendstrup, Elisabeth; Hilberg, Ole; Christensen, Jane Hvarregaard; Simonsen, Ulf; Wagner, Carsten A (2022). Impaired phosphate transport in SLC34A2 variants in patients with pulmonary alveolar microlithiasis. Human Genomics, 16(1):13.

Sánchez‐Villagra, Marcelo R (2022). In the spotlight—Established researcher. Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution, 338(8):443-444.

Deplazes, Sereina; Schlegel, Andrea; Song, Zhuolun; Allegri, Gabriella; Rimann, Nicole; Scherer, Tanja; Willimann, Melanie; Opitz, Lennart; Cunningham, Sharon C; Alexander, Ian E; Kipar, Anja; Häberle, Johannes; Thöny, Beat; Grisch-Chan, Hiu Man (2022). Intrabiliary infusion of naked DNA vectors targets periportal hepatocytes in mice. Molecular Therapy - Methods & Clinical Development, 27:352-367.

Martin, Louise F; Ackermans, Nicole L; Richter, Henning; Kircher, Patrick R; Hummel, Jürgen; Codron, Daryl; Clauss, Marcus; Hatt, Jean-Michel (2022). Macrowear effects of external quartz abrasives of different size and concentration in rabbits (Oryctolagus cuniculus). Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution, 338(8):586-597.

Himmelreich, Nastassja; Montioli, Riccardo; Garbade, Sven F; Kopesky, Jeffrey; Elsea, Sarah H; Carducci, Carla; Voltattorni, Carla B; Blau, Nenad (2022). Spectrum of DDC variants causing aromatic l-amino acid decarboxylase (AADC) deficiency and pathogenicity interpretation using ACMG-AMP/ACGS recommendations. Molecular Genetics and Metabolism, 137(4):359-381.

Clauss, Marcus; Heck, Laura; Veitschegger, Kristof; Geiger, Madeleine (2022). Teeth out of proportion: Smaller horse and cattle breeds have comparatively larger teeth. Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution, 338(8):561-574.

Arora, Natasha; Matias Rodrigues, Joao Frederico; Swayambhu, Meghna; Witlox, Pim (2022). The Microbiome Forensics Database UZH. Forensic Science International: Genetics Supplement Series, 8:181-184.

Sánchez‐Villagra, Marcelo R (2022). The evolutionary and developmental morphology of domestication in birds and mammals. Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution, 338(8):445-446.

Balcarcel, A M; Geiger, M; Clauss, Marcus; Sánchez‐Villagra, Marcelo R (2022). The mammalian brain under domestication: Discovering patterns after a century of old and new analyses. Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution, 338(8):460-483.

García-Martín, Ana Belén; Roder, Thomas; Schmitt, Sarah; Zeeh, Friederike; Bruggmann, Rémy; Perreten, Vincent (2022). Whole-genome analyses reveal a novel prophage and cgSNPs-derived sublineages of Brachyspira hyodysenteriae ST196. BMC Genomics, 23(1):131.

Chiapperino, Luca; Paneni, Francesco (2022). Why epigenetics is (not) a biosocial science and why that matters. Clinical Epigenetics, 14(1):144.

Cantoni, Nathan; Sommavilla, Roberto; Seitz, Patrick; Kulenkampff, Elisabeth; Kahn, Stefan; Lambert, Jean-François; Schmidt, Adrian; Zenhaeusern, Reinhard; Balabanov, Stefan (2022). A multicenter real-world evidence study in the Swiss treatment landscape of chronic myeloid leukemia. BMC Cancer, 22:1192.

Mosler, Thorsten; Baymaz, H Irem; Gräf, Justus F; Mikicic, Ivan; Blattner, Georges; Bartlett, Edward; Ostermaier, Matthias; Piccinno, Rossana; Yang, Jiwen; Voigt, Andrea; Gatti, Marco; Pellegrino, Stefania; Altmeyer, Matthias; Luck, Katja; Ahel, Ivan; Roukos, Vassilis; Beli, Petra (2022). PARP1 proximity proteomics reveals interaction partners at stressed replication forks. Nucleic Acids Research, 50(20):11600-11618.

Armignacco, Roberta; Reel, Parminder S; Reel, Smarti; et al; Beuschlein, Felix (2022). Whole blood methylome-derived features to discriminate endocrine hypertension. Clinical Epigenetics, 14(1):142.

Robles-Bolivar, Paula; Bächinger, David; Parra-Perez, Alberto M; Román-Naranjo, Pablo; Escalera-Balsera, Alba; Gallego-Martinez, Alvaro; Eckhard, Andreas H; Lopez-Escamez, Jose A (2022). A novel nonsense variant in the CENPP gene segregates in a Swiss family with autosomal dominant low-frequency sensorineural hearing loss. European Journal of Human Genetics, 30(11):1301-1305.

Wagner, Andreas (2022). Adaptive evolvability through direct selection instead of indirect, second‐order selection. Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution, 338(7):395-404.

Bakhos, David; Blasco, Hélène; Galvin, John J; Ferreira, Carlos R; Blau, Nenad (2022). Clinical and biochemical footprints of inherited metabolic diseases. IX. Metabolic ear disease. Molecular Genetics and Metabolism, 137(3):223-229.

Brantschen, Jeanine; Pellissier, Loïc; Walser, Jean‐Claude; Altermatt, Florian (2022). Evaluation of primer pairs for eDNA-based assessment of Ephemeroptera, Plecoptera, and Trichoptera across a biogeographically diverse region. Environmental DNA, 4(6):1356-1368.

Runge, Jan‐Niklas; König, Barbara; Lindholm, Anna K; Bendesky, Andres (2022). Parent‐offspring inference in inbred populations. Molecular Ecology Resources, 22(8):2981-2993.

Russo, Teresa; Piccolo, Vincenzo; Moscarella, Elvira; Tschandl, Philipp; Kittler, Harald; Paoli, John; Lallas, Aimilios; Braun, Ralph P; et al (2022). Indications for Digital Monitoring of Patients With Multiple Nevi: Recommendations from the International Dermoscopy Society. Dermatology Parctical and Conceptual, 12(4):e2022182.

Tran, Tiffaney; Ternov, Niels K; Weber, Jochen; Barata, Catarina; Berry, Elizabeth G; Doan, Hung Q; Marghoob, Ashfaq A; Seiverling, Elizabeth V; Sinclair, Shelly; Stein, Jennifer A; Stoos, Elizabeth R; Tolsgaard, Martin G; Wolfensperger, Maya; Braun, Ralph P; Nelson, Kelly C (2022). Instructional Strategies to Enhance Dermoscopic Image Interpretation Education: a Review of the Literature. Dermatology Parctical and Conceptual, 12(4):e2022189.

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Biggel, Michael; Horlbog, Jule; Nüesch-Inderbinen, Magdalena; Chattaway, Marie Anne; Stephan, Roger (2022). Epidemiological links and antimicrobial resistance of clinical Salmonella enterica ST198 isolates: a nationwide microbial population genomic study in Switzerland. Microbial Genomics, 8(10):mgen000877.

Alfaro-Alarcón, Alejandro; Hetzel, Udo; Smura, Teemu; Baggio, Francesca; Morales, Juan Alberto; Kipar, Anja; Hepojoki, Jussi (2022). Boid Inclusion Body Disease Is Also a Disease of Wild Boa Constrictors. Microbiology Spectrum, 10(5):e0170522.

Jayakumar, Priyanikha; Figueiredo, Alexandre R T; Kümmerli, Rolf (2022). Evolution of Quorum Sensing in Pseudomonas aeruginosa Can Occur via Loss of Function and Regulon Modulation. mSystems, 7(5):e0035422.

Bulzu, Paul-Adrian; Kavagutti, Vinicius S; Andrei, Adrian-Stefan; Ghai, Rohit (2022). The Evolutionary Kaleidoscope of Rhodopsins. mSystems, 7(5):e0040522.

Thumfart, Kristina M; Lazzeri, Samuel; Manuella, Francesca; Mansuy, Isabelle M (2022). Long-term effects of early postnatal stress on Sertoli cells. Frontiers in Genetics, 13:1024805.

Mauch, Emanuel; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Complete Genome Sequence of an Uncultivated Freshwater Bacteroidota Lineage. Microbiology Resource Announcements, 11(10):e0076622.

Bernet, Julia; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Complete Genome Sequence of an Uncultivated Freshwater Flavobacterium sp. Strain. Microbiology Resource Announcements, 11(10):e0065922.

Ajvazi, Xhesida; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Study of Complete Genome Sequence of Uncultivated Hyphomonadaceae sp. Microbiology Resource Announcements, 11(10):e0076522.

Iyengar, Bharat Ravi; Wagner, Andreas (2022). Bacterial Hsp90 predominantly buffers but does not potentiate the phenotypic effects of deleterious mutations during fluorescent protein evolution. Genetics, 222(4):iyac154.

Wolff, Jonas O; Wierucka, Kaja; Paterno, Gustavo B; Coddington, Jonathan A; Hormiga, Gustavo; Kelly, Michael B J; Herberstein, Marie E; Ramírez, Martín J (2022). Stabilized Morphological Evolution of Spiders Despite Mosaic Changes in Foraging Ecology. Systematic Biology, 71(6):1487-1503.

Andréoletti, Jérémy; Zwaans, Antoine; Warnock, Rachel C M; Aguirre-Fernández, Gabriel; Barido-Sottani, Joëlle; Gupta, Ankit; Stadler, Tanja; Manceau, Marc (2022). The Occurrence Birth-Death Process for combined-evidence analysis in macroevolution and epidemiology. Systematic Biology, 71(6):1440-1452.

Gasser, Benedikt; Flück, Martin; Frey, Walter O; Valdivieso, Paola; Spörri, Jörg (2022). Association of Gene Variants for Mechanical and Metabolic Muscle Quality with Cardiorespiratory and Muscular Variables Related to Performance in Skiing Athletes. Genes, 13(10):1798.

Galle, Eva; Wong, Chee-Wai; Ghosh, Adhideb; Desgeorges, Thibaut; Melrose, Kate; Hinte, Laura C; Castellano-Castillo, Daniel; Engl, Magdalena; de Sousa, Joao Agostinho; Ruiz-Ojeda, Francisco Javier; De Bock, Katrien; Ruiz, Jonatan R; von Meyenn, Ferdinand (2022). H3K18 lactylation marks tissue-specific active enhancers. Genome Biology, 23:207.

Martínez-Pizarro, Ainhoa; Leal, Fátima; Holm, Lise Lolle; Doktor, Thomas K; Petersen, Ulrika S S; Bueno, María; Thöny, Beat; Pérez, Belén; Andresen, Brage S; Desviat, Lourdes R (2022). Antisense Oligonucleotide Rescue of Deep-Intronic Variants Activating Pseudoexons in the 6-Pyruvoyl-Tetrahydropterin Synthase Gene. Nucleic Acid Therapeutics, 32(5):378-390.

Kapral, Thomas H; Farnhammer, Fiona; Zhao, Weihao; Lu, Zhi J; Zagrovic, Bojan (2022). Widespread autogenous mRNA–protein interactions detected by CLIP-seq. Nucleic Acids Research, 50(17):9984-9999.

Purtschert-Montenegro, Gabriela; Cárcamo-Oyarce, Gerardo; Pinto-Carbó, Marta; Agnoli, Kirsty; Bailly, Aurélien; Eberl, Leo (2022). Pseudomonas putida mediates bacterial killing, biofilm invasion and biocontrol with a type IVB secretion system. Nature Microbiology, 7(10):1547-1557.

Büttner, Florian A; Winter, Stefan; Stühler, Viktoria; et al; Moch, Holger (2022). A novel molecular signature identifies mixed subtypes in renal cell carcinoma with poor prognosis and independent response to immunotherapy. Genome Medicine, 14:105.

Cremer, Franziska; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Complete Genome Sequence from an Uncultivated Freshwater Elusimicrobiota Lineage. Microbiology Resource Announcements, 11(9):e0042622.

James, Nicholas L; Bond, Monica L; Ozgul, Arpat; Lee, Derek E (2022). Trophic processes constrain seasonal ungulate distributions at two scales in an East African savanna. Journal of Mammalogy, 103(4):956-969.

Inderbitzin, Anne; Loosli, Tom; Kouyos, Roger D; Metzner, Karin J (2022). Quantification of transgene expression in GSH AAVS1 with a novel CRISPR/Cas9-based approach reveals high transcriptional variation. Molecular Therapy - Methods & Clinical Development, 26:107-118.

Michalek, Svenja; Goj, Thomas; Plazzo, Anna Pia; Marovca, Blerim; Bornhauser, Beat; Brunner, Thomas (2022). LRH-1/NR5A2 interacts with the glucocorticoid receptor to regulate glucocorticoid resistance. EMBO Reports, 23(9):e54195.

Winkler, Lennart; Lindholm, Anna K (2022). A meiotic driver alters sperm form and function in house mice: a possible example of spite. Chromosome Research, 30(2-3):151-164.

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de Leeuw, Sherida M; Kirschner, Aron W T; Lindner, Karina; Rust, Ruslan; Budny, Vanessa; Wolski, Witold Eryk; Gavin, Anne-Claude; Nitsch, Roger M; Tackenberg, Christian (2022). APOE2, E3, and E4 differentially modulate cellular homeostasis, cholesterol metabolism, and inflammatory response in isogenic iPSC-derived astrocytes. Stem Cell Reports, 17(1):110-126.

Kessler, Camille; Brambilla, Alice; Waldvogel, Dominique; Camenisch, Glauco; Biebach, Iris; Leigh, Deborah M; Grossen, Christine; Croll, Daniel (2022). A robust sequencing assay of a thousand amplicons for the high‐throughput population monitoring of Alpine ibex immunogenetics. Molecular Ecology Resources, 22(1):66-85.

Ahunbay, Esra; Steffen, Fabio D; Zelger-Paulus, Susann; Sigel, Roland K O (2022). Chemical Dual End-Labeling of Large Ribozymes. In: Steger, Gerhard; Rosenbach, Hannah; Span, Ingrid. DNAzymes : Methods and Protocols. New York: Springer, 191-204.

Sahadevan, Sonu; Pérez-Berlanga, Manuela; Polymenidou, Magdalini (2022). Identification of RNA–RBP Interactions in Subcellular Compartments by CLIP-Seq. In: Matějů, Daniel; Chao, Jeffrey A. The Integrated Stress Response - Methods and Protocols. New York: Springer, 305-323.

Kiener, Sarah; Rostaher, Ana; Rüfenacht, Silvia; Jagannathan, Vidhya; Sundberg, John P; Welle, Monika; Leeb, Tosso (2022). Independent DSG4 frameshift variants in cats with hair shaft dystrophy. Molecular Genetics and Genomics, 297(1):147-154.

Stritt, Christoph; Gimmi, Elena L; Wyler, Michele; Bakali, Abdelmonaim H; Skalska, Aleksandra; Hasterok, Robert; Mur, Luis A J; Pecchioni, Nicola; Roulin, Anne C (2022). Migration without interbreeding: Evolutionary history of a highly selfing Mediterranean grass inferred from whole genomes. Molecular Ecology, 31(1):70-85.

Golomingi, Raffael; Haas, Cordula; Dobay, Akos; Kottner, Sören; Ebert, Lars (2022). Sperm hunting on optical microscope slides for forensic analysis with deep convolutional networks – a feasibility study. Forensic Science International. Genetics, 56:102602.

Grob, Stefan (2022). Tough Tissue Hi-C. In: Sexton, Tom. Spatial Genome Organization. New York: Springer, 35-50.

Mossion, Vinciane; Dauphin, Benjamin; Grant, Jason; Kessler, Michael; Zemp, Niklaus; Croll, Daniel (2022). Transcriptome‐wide SNPs for Botrychium lunaria ferns enable fine‐grained analysis of ploidy and population structure. Molecular Ecology Resources, 22(1):254-271.

Schubert, Jasmin; Li, Yanru; Mendes, Marta A; Fei, Danli; Dickinson, Hugh; Moore, Ian; Baroux, Célia (2022). A procedure for Dex-induced gene transactivation in Arabidopsis ovules. Plant Methods, 18:41.

Eugster, Anne; Bostick, Magnolia L; Gupta, Nidhi; Mariotti-Ferrandiz, Encarnita; Kraus, Gloria; Meng, Wenzhao; Soto, Cinque; Trück, Johannes; Stervbo, Ulrik; Luning Prak, Eline T (2022). AIRR Community Guide to Planning and Performing AIRR-Seq Experiments. In: Langerak, Anton W. Immunogenetics : Methods and Protocols. New York, NY: Springer, 261-278.

Nowak, Albina; Dormond, Olivier; Monzambani, Véronique; Huynh-Do, Uyen; Barbey, Frédéric (2022). Agalsidase-β should be proposed as first line therapy in classic male Fabry patients with undetectable α-galactosidase A activity. Molecular Genetics and Metabolism, 137(1-2):173-178.

Robin, Mathieu; Ferrari, Giada; Akgül, Gülfirde; Münger, Xenia; von Seth, Johanna; Schuenemann, Verena J; Dalén, Love; Grossen, Christine (2022). Ancient mitochondrial and modern whole genomes unravel massive genetic diversity loss during near extinction of Alpine ibex. Molecular Ecology, 31(13):3548-3565.

van Ginkel, Willem G; Winn, Shelley R; Dudley, Sandra; Krenik, Destine; Perez, Ruby; Rimann, Nicole; Thöny, Beat; Raber, Jacob; Harding, Cary O (2022). Biochemical and behavioural profile of NTBC treated Tyrosinemie type 1 mice. Molecular Genetics and Metabolism, 137(1-2):9-17.

Frey, Nina; Schwank, Gerald (2022). CRISPR-Based Screening in Three-Dimensional Organoid Cultures to Identify TGF-β Pathway Regulators. In: Zhike, Zi; Xuedong, Liu. TGF-Beta Signaling : Methods and Protocols. New York, NY: Springer, 99-111.

Stoy, Henriette; Luethi, Joel; Roessler, Fabienne K; Riemann, Johannes; Kaech, Andres; Lopes, Massimo (2022). Direct R-Loop Visualization on Genomic DNA by Native Automated Electron Microscopy. In: Aguilera, Andrés; Ruzov, Alexey. R-Loops: Methods and Protocols. New York: Springer, 1-20.

Aguilar, Claudio; Wissmann, Ramona; Fraefel, Cornel; Eichwald, Catherine (2022). Display of Heterologous Proteins in Bacillus Subtilis Biofilms for Enteric Immunization. In: Walker, John M; Brun, Alejandro. Vaccine Technologies for Veterinary Viral Diseases. New York, NY: Springer, 73-95.

Gil Vasquez, Ester; Nasreddin, Nadia; Valbuena, Gabriel N; et al; Koelzer, Viktor H; Leedham, Simon J (2022). Dynamic and adaptive cancer stem cell population admixture in colorectal neoplasia. Cell Stem Cell, 29(8):1213-1228.

Oussalah, Abderrahim; Siblini, Youssef; Hergalant, Sébastien; et al; Froese, D Sean; Baumgartner, Matthias R (2022). Epimutations in both the TESK2 and MMACHC promoters in the Epi-cblC inherited disorder of intracellular metabolism of vitamin B12. Clinical Epigenetics, 14:52.

Oborská-Oplová, Michaela; Fischer, Ute; Altvater, Martin; Panse, Vikram Govind (2022). Eukaryotic Ribosome assembly and Nucleocytoplasmic Transport. In: Walker, John M. Ribosome Biogenesis : Methods and Protocols. New York, NY: Springer, 99-126.

Marconi, Guya Diletta; Diomede, Francesca; Trubiani, Oriana; Porcheri, Cristina; Mitsiadis, Thimios A (2022). Exosomes as Carriers for Notch Molecules. In: Dongyu, Jia. Notch Signaling Research : Methods and Protocols. New York, NY: Springer, 197-208.

Palles, Claire; West, Hannah D; Chew, Edward; et al; Koelzer, Viktor H (2022). Germline MBD4 deficiency causes a multi-tumor predisposition syndrome. American Journal of Human Genetics, 109(5):953-960.

Cervantes-Gracia, Karla; Chahwan, Richard; Husi, Holger (2022). Integrative OMICS Data-Driven Procedure Using a Derivatized Meta-Analysis Approach. Frontiers in Genetics, 13:828786.

Rust, Ruslan; Walker, Tara L (2022). Isolation and Culture of Adult Hippocampal Precursor Cells as Free-Floating Neurospheres. In: Deleyrolle, Loic P. Neural Progenitor Cells : Methods and Protocols. New York, NY: Springer, 33-44.

Zosel, Franziska; Holla, Andrea; Schuler, Benjamin (2022). Labeling of Proteins for Single-Molecule Fluorescence Spectroscopy. In: Munoz, Victor. Protein Folding Methods and Protocols. New York: Springer, 207-233.

Romdhane, Sana; Spor, Aymé; Banerjee, Samiran; Breuil, Marie-Christine; Bru, David; Chabbi, Abad; Hallin, Sara; van der Heijden, Marcel G A; Saghai, Aurélien; Philippot, Laurent (2022). Land-use intensification differentially affects bacterial, fungal and protist communities and decreases microbiome network complexity. Environmental Microbiome, 17:1.

Stoy, Henriette; Lang, Kevin S; Merrikh, Houra; Lopes, Massimo (2022). Locus-Specific Analysis of Replication Dynamics and Detection of DNA-RNA Hybrids by Immuno Electron Microscopy. In: Aguilera, Andrés; Ruzov, Alexey. R-Loops: Methods and Protocols. New York: Springer, 67-89.

Giordano, Deborah; Langini, Cassiano; Caflisch, Amedeo; Marabotti, Anna; Facchiano, Angelo (2022). Molecular dynamics analysis of the structural properties of the transglutaminases of Kutzneria albida and Streptomyces mobaraensis. Computational and Structural Biotechnology Journal, 20:3924-3934.

Rahman, Shamima; Baumgartner, Matthias R; Morava, Eva; Patterson, Marc; Peters, Verena; Zschocke, Johannes (2022). Quo vadis now: Beyond genomics to an era of personalised medicine. Journal of Inherited Metabolic Disease, 45(2):129-131.

Hadzic, Mélodie C A S; Sigel, Roland K O; Börner, Richard (2022). Single-Molecule Kinetic Studies of Nucleic Acids by Förster Resonance Energy Transfer. In: Steger, Gerhard; Rosenbach, Hannah; Span, Ingrid. DNAzymes : Methods and Protocols. New York: Springer, 173-190.

2021

De Rossi, Pierre; Lewis, Amanda J; Furrer, Johanna; De Vos, Laura; Demeter, Tomas; Zbinden, Aurélie; Zhong, Weijia; Wiersma, Vera I; Scialo, Carlo; Weber, Julien; Guo, Zhongning; Scaramuzza, Stefano; Di Fabrizio, Marta; Böing, Carolin; Castaño‐Díez, Daniel; Al‐Amoudi, Ashraf; Pérez-Berlanga, Manuela; Lashley, Tammaryn; Stahlberg, Henning; Polymenidou, Magdalini (2021). FTLD‐TDP assemblies seed neoaggregates with subtype‐specific features via a prion‐like cascade. EMBO Reports, 22(12):e53877.

Zhang, Xiang; Schuhmachers, Patrick; Mourão, André; et al; Murer, Anita; Münz, Christian (2021). PLK1-dependent phosphorylation restrains EBNA2 activity and lymphomagenesis in EBV-infected mice. EMBO Reports, 22(12):e53007.

Panagopoulos, Andreas; Altmeyer, Matthias (2021). When the RAP (80) fades out, you can hear BRCA1 RING. EMBO Reports, 22(12):e54116.

Emmenegger, Marc; Kumar, Sreedhar Saseendran; Emmenegger, Vishalini; Malinauskas, Tomas; Buettner, Thomas; Rose, Laura; Schierack, Peter; Sprinzl, Martin F; Sommer, Clemens J; Lackner, Karl J; Aguzzi, Adriano; Roggenbuck, Dirk; Frauenknecht, Katrin B M (2021). Anti-prothrombin autoantibodies enriched after infection with SARS-CoV-2 and influenced by strength of antibody response against SARS-CoV-2 proteins. PLoS Pathogens, 17(12):e1010118.

Bai, Yu; Caussinus, Emmanuel; Leo, Stefano; Bosshardt, Fritz; Myachina, Faina; Rot, Gregor; Robinson, Mark D; Lehner, Christian F (2021). A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells. BMC Genomics, 22:771.

Milosavljevic, Stefan; Kuo, Tony; Decarli, Samuele; Mohn, Lucas; Sese, Jun; Shimizu, Kentaro K; Shimizu-Inatsugi, Rie; Robinson, Mark D (2021). ARPEGGIO: Automated Reproducible Polyploid EpiGenetic GuIdance workflOw. BMC Genomics, 22:547.

Gutzmer, Ralf; Robert, Caroline; Loquai, Carmen; Schadendorf, Dirk; Squittieri, Nicholas; Arntz, Ramon; Martelli, Serena; Dummer, Reinhard (2021). Assessment of various efficacy outcomes using ERIVANCE-like criteria in patients with locally advanced basal cell carcinoma receiving sonidegib: results from a preplanned sensitivity analysis. BMC Cancer, 21:1244.

Hiltpold, Maya; Kadri, Naveen Kumar; Janett, Fredi; Witschi, Ulrich; Schmitz-Hsu, Fritz; Pausch, Hubert (2021). Autosomal recessive loci contribute significantly to quantitative variation of male fertility in a dairy cattle population. BMC Genomics, 22(1):225.

Avilla-Royo, Eva; Gegenschatz-Schmid, Katharina; Grossmann, Jonas; Kockmann, Tobias; Zimmermann, Roland; Snedeker, Jess Gerrit; Ochsenbein-Kölble, Nicole; Ehrbar, Martin (2021). Comprehensive quantitative characterization of the human term amnion proteome. Matrix Biology Plus, 12:100084.

Çilingir, F G; Hansen, Dennis; Ozgul, Arpat; Grossen, Christine (2021). Design of SNP markers for Aldabra giant tortoises using low coverage ddRAD-seq. Conservation Genetics Resources, 13(4):409-412.

Mathis, Déborah; Sass, Jörn Oliver; Graubner, Claudia; Schoster, Angelika (2021). Diagnosis of atypical myopathy based on organic acid and acylcarnitine profiles and evolution of biomarkers in surviving horses. Molecular Genetics and Metabolism Reports, 29:100827.

Alther, Roman; Fronhofer, Emanuel A; Altermatt, Florian (2021). Dispersal behaviour and riverine network connectivity shape the genetic diversity of freshwater amphipod metapopulations. Molecular Ecology, 30(24):6551-6565.

Boehi, Flurina; Manetsch, Patrick; Hottiger, Michael O (2021). Interplay between ADP-ribosyltransferases and essential cell signaling pathways controls cellular responses. Cell Discovery, 7(1):104.

Reyer, Heinz‐Ulrich (2021). Josh Van Buskirk (1959–2021). Evolution, 75(12):3228-3232.

Häberle, Johannes; Moore, Marvin B; Haskins, Nantaporn; Rüfenacht, Véronique; Rokicki, Dariusz; Rubio‐Gozalbo, Estela; Tuchman, Mendel; Longo, Nicola; Yandell, Mark; Andrews, Ashley; AhMew, Nicholas; Caldovic, Ljubica (2021). Noncoding sequence variants define a novel regulatory element in the first intron of the N-acetylglutamate synthase gene. Human Mutation, 42(12):1624-1636.

Bernardo-Faura, Marti; Rinas, Melanie; Wirbel, Jakob; Pertsovskaya, Inna; Pliaka, Vicky; Messinis, Dimitris E; Vila, Gemma; Sakellaropoulos, Theodore; Faigle, Wolfgang; Stridh, Pernilla; Behrens, Janina R; Olsson, Tomas; Martin, Roland; Paul, Friedemann; Alexopoulos, Leonidas G; Villoslada, Pablo; Saez-Rodriguez, Julio (2021). Prediction of combination therapies based on topological modeling of the immune signaling network in multiple sclerosis. Genome Medicine, 13:117.

Schmeing, Stephan; Robinson, Mark D (2021). ReSeq simulates realistic Illumina high-throughput sequencing data. Genome Biology, 22:67.

Piazza, Stefano; Campa, Manuela; Pompili, Valerio; Costa, Lorenza Dalla; Salvagnin, Umberto; Nekrasov, Vladimir; Zipfel, Cyril; Malnoy, Mickael (2021). The Arabidopsis pattern recognition receptor EFR enhances fire blight resistance in apple. Horticulture Research, 8:204.

Lankheet, Imke; Vicente, Mário; Barbieri, Chiara; Schlebusch, Carina (2021). The performance of common SNP arrays in assigning African mitochondrial haplogroups. BMC Genomics, 22:43.

Greber, Urs F (2021). Two years into COVID-19 – Lessons in SARS-CoV-2 and a perspective from papers in FEBS Letters. FEBS letters, 595(23):2847-2853.

Pape, Thorben; Hunkemöller, Anna Maria; Kümpers, Philipp; Haller, Hermann; David, Sascha; Stahl, Klaus (2021). Targeting the "sweet spot" in septic shock - A perspective on the endothelial glycocalyx regulating proteins Heparanase-1 and -2. Matrix Biology Plus, 12:100095.

Peña‐Hernández, Rodrigo; Aprigliano, Rossana; Carina Frommel, Sandra; Pietrzak, Karolina; Steiger, Seraina; Roganowicz, Marcin; Lerra, Luigi; Bizzarro, Juliana; Santoro, Raffaella (2021). BAZ2A‐mediated repression via H3K14ac‐marked enhancers promotes prostate cancer stem cells. EMBO Reports, 22(11):e53014.

Denoth-Lippuner, Annina; Jaeger, Baptiste N; Liang, Tong; Royall, Lars N; Chie, Stefanie E; Buthey, Kilian; Machado, Diana; Korobeynyk, Vladislav I; Kruse, Merit; Munz, Clara M; Gerbaulet, Alexander; Simons, Benjamin D; Jessberger, Sebastian (2021). Visualization of individual cell division history in complex tissues using iCOUNT. Cell Stem Cell, 28(11):2020-2034.e12.

Polanco F, Andrea; Richards, Eilísh; Flück, Benjamin; Valentini, Alice; Altermatt, Florian; Brosse, Sébastien; Walser, Jean‐Claude; Eme, David; Marques, Virginie; Manel, Stéphanie; Albouy, Camille; Dejean, Tony; Pellissier, Loïc (2021). Comparing the performance of 12S mitochondrial primers for fish environmental DNA across ecosystems. Environmental DNA, 3(6):1113-1127.

San Roman, Magdalena; Wagner, Andreas (2021). Diversity begets diversity during community assembly until ecological limits impose a diversity ceiling. Molecular Ecology, 30(22):5874-5887.

Freitag, Johanna R B; Wilkens, Mirja R; Muscher-Banse, A S; Gerstner, Kerstin; Schnepel, N; Torgerson, Paul R; Liesegang, Annette (2021). Effects of diets differing in dietary cation-anion difference and calcium concentration on calcium homeostasis in neutered male sheep. Journal of Dairy Science, 104(11):11537-11552.

Hirota, Shun K; Yasumoto, Akiko A; Nitta, Kozue; Tagane, Misa; Miki, Nozomu; Suyama, Yoshihisa; Yahara, Tetsukazu (2021). Evolutionary history of Hemerocallis in Japan inferred from chloroplast and nuclear phylogenies and levels of interspecific gene flow. Molecular Phylogenetics and Evolution, 164:107264.

Kido, Jun; Matsumoto, Shirou; Häberle, Johannes; Inomata, Yukihiro; Kasahara, Mureo; Sakamoto, Seisuke; Horikawa, Reiko; Tanemura, Akihiro; Okajima, Hideaki; Suzuki, Tatsuya; Nakamura, Kimitoshi (2021). Role of liver transplantation in urea cycle disorders: Report from a nationwide study in Japan. Journal of Inherited Metabolic Disease, 44(6):1311-1322.

Cervantes-Gracia, Karla; Gramalla-Schmitz, Anna; Weischedel, Julian; Chahwan, Richard (2021). APOBECs orchestrate genomic and epigenomic editing across health and disease. Trends in Genetics : Tig, 37(11):1028-1043.

VanSickle, Elizabeth A; Michael, Julianne; Bachmann, André S; Rajasekaran, Surender; Prokop, Jeremy W; Kuzniecky, Ruben; Hofstede, Floris C; Steindl, Katharina; Rauch, Anita; Lipson, Mark H; Bupp, Caleb P (2021). Expanding the phenotype: Four new cases and hope for treatment in Bachmann-Bupp syndrome. American Journal of Medical Genetics. Part A, 185(11):3485-3493.

Zheng, Jia; Guo, Ning; Wagner, Andreas (2021). Mistranslation Reduces Mutation Load in Evolving Proteins through Negative Epistasis with DNA Mutations. Molecular Biology and Evolution, 38(11):4792-4804.

Heinzer, Daniel; Avar, Merve; Pease, Daniel Patrick; Dhingra, Ashutosh; Yin, Jiang-An; Schaper, Elke; Doğançay, Berre; Emmenegger, Marc; Spinelli, Anna; Maggi, Kevin; Chincisan, Andra; Mead, Simon; Hornemann, Simone; Heutink, Peter; Aguzzi, Adriano (2021). Novel regulators of PrPC biosynthesis revealed by genome-wide RNA interference. PLoS Pathogens, 17(10):e1010013.

Balakrishna, Suraj; Salazar-Vizcaya, Luisa; Schmidt, Axel J; Kachalov, Viacheslav; Kusejko, Katharina; Thurnheer, Maria Christine; Roth, Jan A; Nicca, Dunja; Cavassini, Matthias; Battegay, Manuel; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F; Rauch, Andri; Kouyos, Roger D; Swiss HIV Cohort Study (2021). Assessing the drivers of syphilis among men who have sex with men in Switzerland reveals a key impact of screening frequency: A modelling study. PLoS Computational Biology, 17(10):e1009529.

Flores Ramos, Stephany; Brugger, Silvio D; Escapa, Isabel Fernandez; Skeete, Chelsey A; Cotton, Sean L; Eslami, Sara M; Gao, Wei; Bomar, Lindsey; Tran, Tommy H; Jones, Dakota S; Minot, Samuel; Roberts, Richard J; Johnston, Christopher D; Lemon, Katherine P (2021). Genomic Stability and Genetic Defense Systems in Dolosigranulum pigrum, a Candidate Beneficial Bacterium from the Human Microbiome. mSystems, 6(5):e0042521.

Brachet, Morgane A A; Vullioud, Philippe; Ganswindt, Andre; Manser, Marta B; Keller, Matthieu; Clutton-Brock, Tim H (2021). Parity predicts allonursing in a cooperative breeder. Journal of Mammalogy, 102(5):1365-1374.

Tromans-Coia, Callum; Sanchi, Andrea; Moeller, Giuliana K; Timinszky, Gyula; Lopes, Massimo; Ahel, Ivan (2021). TARG1 protects against toxic DNA ADP-ribosylation. Nucleic Acids Research, 49(18):10477-10492.

Börold, Jacob; Eletto, Davide; Busnadiego, Idoia; Mair, Nina K; Moritz, Eva; Schiefer, Samira; Schmidt, Nora; Petric, Philipp P; Wong, W Wei-Lynn; Schwemmle, Martin; Hale, Benjamin G (2021). BRD9 is a druggable component of interferon-stimulated gene expression and antiviral activity. EMBO Reports, 22(10):e52823.

Säle, Verena; Palenzuela, Javier; Azcón-Aguilar, Concepción; Sánchez-Castro, Iván; da Silva, Gladstone Alves; Seitz, Benjamin; Sieverding, Ewald; van der Heijden, Marcel G A; Oehl, Fritz (2021). Ancient lineages of arbuscular mycorrhizal fungi provide little plant benefit. Mycorrhiza, 31(5):559-576.

Birch, Joanne L; Kocyan, Alexander (2021). Biogeography of the monocotyledon astelioid clade (Asparagales): A history of long-distance dispersal and diversification with emerging habitats. Molecular Phylogenetics and Evolution, 163:107203.

Leigh, Deborah M; Lischer, Heidi E L; Guillaume, Frédéric; Grossen, Christine; Günther, Torsten (2021). Disentangling adaptation from drift in bottlenecked and reintroduced populations of Alpine ibex. Molecular Ecology Resources, 21(7):2350-2363.

Figueiredo, Alexandre R T; Wagner, Andreas; Kümmerli, Rolf (2021). Ecology drives the evolution of diverse social strategies in Pseudomonas aeruginosa. Molecular Ecology, 30(20):5214-5228.

Pawlowski, Jan; Apothéloz‐Perret‐Gentil, Laure; Altermatt, Florian (2021). Environmental versus extra‐organismal DNA. Molecular Ecology, 30(19):4606-4607.

Hettmer, Simone; Dachy, Guillaume; Seitz, Guido; Agaimy, Abbas; Duncan, Catriona; Jongmans, Marjolijn; Hirsch, Steffen; Kventsel, Iris; Kordes, Uwe; de Krijger, Ronald R; Metzler, Markus; Michaeli, Orli; Nemes, Karolina; Poluha, Anna; Ripperger, Tim; Russo, Alexandra; Smetsers, Stephanie; Sparber-Sauer, Monika; Stutz, Eveline; Bourdeaut, Franck; Kratz, Christian P; Demoulin, Jean-Baptiste (2021). Genetic testing and surveillance in infantile myofibromatosis: a report from the SIOPE Host Genome Working Group. Familial cancer, 20(4):327-336.

Unglaub, Bianca; Cayuela, Hugo; Schmidt, Benedikt R; Preißler, Kathleen; Glos, Julian; Steinfartz, Sebastian (2021). Context‐dependent dispersal determines relatedness and genetic structure in a patchy amphibian population. Molecular Ecology, 30(20):5009-5028.

García-Martín, Ana B; Schmitt, Sarah; Zeeh, Friederike; Perreten, Vincent (2021). Complete Circular Genome Sequences of Brachyspira hyodysenteriae Isolates of the Four Different Sequence Types Causing Swine Dysentery in Switzerland. Microbiology Resource Announcements, 10(39):e0084721.

Immel, Alexander; Key, Felix M; Szolek, András; et al; Schuenemann, Verena J; Reiter, Ella (2021). Analysis of genomic DNA from medieval plague victims suggests long-term effect of Yersinia pestis on human immunity genes. Molecular Biology and Evolution, 38(10):4059-4076.

Cuénod, Aline; Wüthrich, Daniel; Seth-Smith, Helena M B; Ott, Chantal; Gehringer, Christian; Foucault, Frédéric; Mouchet, Roxanne; Kassim, Ali; Revathi, Gunturu; Vogt, Deborah R; von Felten, Stefanie; Bassetti, Stefano; Tschudin-Sutter, Sarah; Hettich, Timm; Schlotterbeck, Götz; Homberger, Christina; Casanova, Carlo; Moran-Gilad, Jacob; Sagi, Orli; Rodríguez-Sánchez, Belén; Müller, Franco; Aerni, Martina; Gaia, Valeria; van Dessel, Helke; Kampinga, Greetje A; Müller, Claudia; Daubenberger, Claudia; Pflüger, Valentin; Egli, Adrian (2021). Whole-genome sequence-informed MALDI-TOF MS diagnostics reveal importance of Klebsiella oxytoca group in invasive infections: a retrospective clinical study. Genome Medicine, 13:150.

Posada-Céspedes, Susana; Van Zyl, Gert; Montazeri, Hesam; Kuipers, Jack; Rhee, Soo-Yon; Kouyos, Roger; Günthard, Huldrych F; Beerenwinkel, Niko (2021). Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C. PLoS Computational Biology, 17(9):e1008363.

Striednig, Bianca; Lanner, Ulrike; Niggli, Selina; Katic, Ana; Vormittag, Simone; Brülisauer, Sabrina; Hochstrasser, Ramon; Kaech, Andres; Welin, Amanda; Flieger, Antje; Ziegler, Urs; Schmidt, Alexander; Hilbi, Hubert; Personnic, Nicolas (2021). Quorum sensing governs a transmissive Legionella subpopulation at the pathogen vacuole periphery. EMBO Reports, 22(9):e52972.

Kolesnik-Goldmann, Natalia; Bodendoerfer, Elias; Röthlin, Kim; Herren, Sebastian; Imkamp, Frank; Marchesi, Martina; Mancini, Stefano (2021). Rapid Detection of PBP2a in Staphylococci from Shortly Incubated Subcultures of Positive Blood Cultures by an Immunochromatographic Assay. Microbiology Spectrum, 9(1):e0046221.

Ferreira, Carlos R; Martinelli, Diego; Blau, Nenad (2021). Clinical and biochemical footprints of inherited metabolic diseases. VI. Metabolic dermatoses. Molecular Genetics and Metabolism, 134(1-2):87-95.

Bräunlich, Stephanie; Koller, Teresa; Glauser, Gaétan; Krattinger, Simon G; Keller, Beat (2021). Expression of the wheat disease resistance gene Lr34 in transgenic barley leads to accumulation of abscisic acid at the leaf tip. Plant Physiology and Biochemistry, 166:950-957.

Martin, Roland; Sospedra, Mireia; Eiermann, Thomas; Olsson, Tomas (2021). Multiple sclerosis: doubling down on MHC. Trends in Genetics : Tig, 37(9):784-797.

Corrêa, Thiago; Feltes, Bruno César; Schinzel, Albert; Riegel, Mariluce; Riegel, Mariluce (2021). Network-based analysis using chromosomal microdeletion syndromes as a model. American Journal of Medical Genetics. Part C: Seminars in Medical Genetics, 187(3):337-348.

Salzer, Ralf; Clark, Jordan J; Vaysburd, Marina; Chang, Veronica T; Albecka, Anna; Kiss, Leo; Sharma, Parul; Gonzalez Llamazares, Andres; Kipar, Anja; Hiscox, Julian A; Owen, Andrew; Aricescu, A Radu; Stewart, James P; James, Leo C; Löwe, Jan (2021). Single‐dose immunisation with a multimerised SARS‐CoV‐2 receptor binding domain (RBD) induces an enhanced and protective response in mice. FEBS letters, 595(18):2323-2340.

Sato, Takehiro; Adachi, Noboru; Kimura, Ryosuke; Hosomichi, Kazuyoshi; Yoneda, Minoru; Oota, Hiroki; Tajima, Atsushi; Toyoda, Atsushi; Kanzawa-Kiriyama, Hideaki; Matsumae, Hiromi; Koganebuchi, Kae; Shimizu, Kentaro K; Shinoda, Ken-Ichi; Hanihara, Tsunehiko; Weber, Andrzej; Kato, Hirofumi; Ishida, Hajime (2021). Whole Genome Sequencing of a 900-year-old Human Skeleton Supports Two Past Migration Events from the Russian Far East to Northern Japan. Genome Biology and Evolution, 13(9):evab192.

Tran, Christel; Turolla, Licia; Ballhausen, Diana; Buros, Sandrine Cornaz; Teav, Tony; Gallart-Ayala, Hector; Ivanisevic, Julijana; Faouzi, Mohamed; Lefeber, Dirk J; Ivanovski, Ivan; Giangiobbe, Sara; Caraffi, Stefano Giuseppe; Garavelli, Livia; Superti-Furga, Andrea (2021). The fate of orally administered sialic acid: First insights from patients with N-acetylneuraminic acid synthase deficiency and control subjects. Molecular Genetics and Metabolism Reports, 28:100777.

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Germani, Federico; Wäscher, Sebastian; Biller-Andorno, Nikola (2021). A CRISPR response to pandemics? : Exploring the ethics of genetically engineering the human immune system. EMBO Reports, 22(3):e52319.

Alterauge, Amelie; Lösch, Sandra; Sulzer, Andrea; Gysi, Mario; Haas, Cordula (2021). Beyond simple kinship and identification. aDNA analyses from a 17th-19th century crypt in Germany. Forensic Science International. Genetics, 53:102498.

Bodenhausen, Natacha; Deslandes-Hérold, Gabriel; Waelchli, Jan; Held, Alain; van der Heijden, Marcel G A; Schlaeppi, Klaus (2021). Relative qPCR to quantify colonization of plant roots by arbuscular mycorrhizal fungi. Mycorrhiza, 31(2):137-148.

Brücher, Dominik; Kirchhammer, Nicole; Smith, Sheena N; Schumacher, Jatina; Schumacher, Nina; Kolibius, Jonas; Freitag, Patrick C; Schmid, Markus; Weiss, Fabian; Keller, Corina; Grove, Melanie; Greber, Urs F; Zippelius, Alfred; Plückthun, Andreas (2021). iMATCH: an integrated modular assembly system for therapeutic combination high-capacity adenovirus gene therapy. Molecular Therapy - Methods & Clinical Development, 20:572-586.

Russkamp, Norman F; Myburgh, Renier; Kiefer, Jonathan D; Neri, Dario; Manz, Markus G (2021). Anti-CD117 immunotherapy to eliminate hematopoietic and leukemia stem cells. Experimental Hematology, 95:31-45.

Lenherr, Nina; Christodoulou, John; Duley, John; Dobritzsch, Doreen; Fairbanks, Lynette; Datta, Alexandre N; Filges, Isabel; Gürtler, Nicolas; Roelofsen, Jeroen; van Kuilenburg, André B P; Kemper, Claudia; West, Erin E; Szinnai, Gabor; Huemer, Martina (2021). Co-therapy with S-adenosylmethionine and nicotinamide riboside improves t-cell survival and function in Arts Syndrome (PRPS1 deficiency). Molecular Genetics and Metabolism Reports, 26:100709.

Markolin, Philipp; Davidson, Natalie; Hirt, Christian K; Chabbert, Christophe D; Zamboni, Nicola; Schwank, Gerald; Krek, Wilhelm; Rätsch, Gunnar (2021). Identification of HIF-dependent alternative splicing in gastrointestinal cancers and characterization of a long, coding isoform of SLC35A3. Genomics, 113(2):515-529.

Frey, Pascal M; Baer, Julian; Bergada-Pijuan, Judith; Lawless, Conor; Bühler, Philipp K; Kouyos, Roger D; Lemon, Katherine P; Zinkernagel, Annelies S; Brugger, Silvio D (2021). Quantifying Variation in Bacterial Reproductive Fitness: a High-Throughput Method. mSystems, 6(1):e01323-20.

Johannsen, Emma B; Baughn, Linda B; Sharma, Neeraj; Zjacic, Nicolina; Pirooznia, Mehdi; Elhaik, Eran (2021). The Genetics of Sudden Infant Death Syndrome-Towards a Gene Reference Resource. Genes, 12:216.

Qu, Zhishuai; Forster, Dominik; Bruni, Estelle P; Frantal, Daniela; Kammerlander, Barbara; Nachbaur, Laura; Pitsch, Gianna; Posch, Thomas; Pröschold, Thomas; Teubner, Katrin; Sonntag, Bettina; Stoeck, Thorsten (2021). Aquatic food webs in deep temperate lakes: Key species establish through their autecological versatility. Molecular Ecology, 30(4):1053-1071.

Ferreira, Carlos R; Blau, Nenad (2021). Clinical and biochemical footprints of inherited metabolic diseases. IV. Metabolic cardiovascular disease. Molecular Genetics and Metabolism, 132(2):112-118.

Guberina, Maja; Sak, Ali; Pöttgen, Christoph; Tinhofer-Keilholz, Ingeborg; Budach, Volker; Balermpas, Panagiotis; Von der Grün, Jens; Rödel, Claus Michael; Gkika, Eleni; Grosu, Anca-Ligia; Abdollahi, Amir; Debus, Jürgen; Belka, Claus; Pigorsch, Steffi; Combs, Stephani E; Mönnich, David; Zips, Daniel; De-Colle, Chiara; Welz, Stefan; Linge, Annett; Lohaus, Fabian; Baretton, Gustavo; Gauler, Thomas; Baumann, Michael; Krause, Mechthild; Schuler, Martin; Bankfalvi, Agnes; Höing, Benedikt; Lang, Stephan; Stuschke, Martin (2021). ERCC2 gene single-nucleotide polymorphism as a prognostic factor for locally advanced head and neck carcinomas after definitive cisplatin-based radiochemotherapy. Pharmacogenomics Journal, 21(1):37-46.

Pretz, Dominik; Le Foll, Christelle; Rizwan, Mohammed Z; Lutz, Thomas A; Tups, Alexander (2021). Hyperleptinemia as a contributing factor for the impairment of glucose intolerance in obesity. FASEB Journal, 35(2):e21216.

Daryadel, Arezoo; Ruiz, Pedro A; Gehring, Nicole; Stojanovic, Dragana; Ugrica, Marko; Bettoni, Carla; Sabrautzki, Sibylle; Pastor-Arroyo, Eva-Maria; Frey-Wagner, Isabelle; Lorenz-Depiereux, Bettina; Strom, Tim M; de Angelis, Martin Hrabě; Rogler, Gerhard; Wagner, Carsten A; Rubio-Aliaga, Isabel (2021). Systemic Jak1 activation provokes hepatic inflammation and imbalanced FGF23 production and cleavage. FASEB Journal, 35(2):e21302.

Tepekule, Burcu; Hauser, Anthony; Kachalov, Viacheslav N; Andresen, Sara; Scheier, Thomas; Schreiber, Peter W; Günthard, Huldrych F; Kouyos, Roger D (2021). Assessing the potential impact of transmission during prolonged viral shedding on the effect of lockdown relaxation on COVID-19. PLoS Computational Biology, 17:e1008609.

Kachalov, Viacheslav N; Nguyen, Huyen; Balakrishna, Suraj; Salazar-Vizcaya, Luisa; Sommerstein, Rami; Kuster, Stefan P; Hauser, Anthony; Abel Zur Wiesch, Pia; Klein, Eili; Kouyos, Roger D (2021). Identifying the drivers of multidrug-resistant Klebsiella pneumoniae at a European level. PLoS Computational Biology, 17:e1008446.

Tusup, Marina; Cheng, Phil F; Picardi, Ernesto; Raziunaite, Austeja; Dummer, Reinhard; Levesque, Mitchell P; French, Lars E; Guenova, Emmanuella; Kundig, Thomas M; Pascolo, Steve (2021). Evaluation of the Interplay between the ADAR Editome and Immunotherapy in Melanoma. Non-Coding RNA, 7:5.

Mallona, Izaskun; Ilie, Ioana Mariuca; Karemaker, Ino Dominiek; Butz, Stefan; Manzo, Massimiliano; Caflisch, Amedeo; Baubec, Tuncay (2021). Flanking sequence preference modulates de novo DNA methylation in the mouse genome. Nucleic Acids Research, 49(1):145-157.

Hussung, Saskia; Akhoundova, Dilara; Hipp, Julian; Follo, Marie; Klar, Rhena F U; Philipp, Ulrike; Scherer, Florian; von Bubnoff, Nikolas; Duyster, Justus; Boerries, Melanie; Wittel, Uwe; Fritsch, Ralph M (2021). Longitudinal analysis of cell-free mutated KRAS and CA 19-9 predicts survival following curative resection of pancreatic cancer. BMC Cancer, 21:49.

Wang, Yuluan; Soneson, Charlotte; Malinowska, Anna L; Laski, Artur; Ghosh, Souvik; Kanitz, Alexander; Gebert, Luca F R; Robinson, Mark D; Hall, Jonathan (2021). MiR-CLIP reveals iso-miR selective regulation in the miR-124 targetome. Nucleic Acids Research, 49(1):25-37.

Szklarczyk, Damian; Gable, Annika L; Nastou, Katerina C; Lyon, David; Kirsch, Rebecca; Pyysalo, Sampo; Doncheva, Nadezhda T; Legeay, Marc; Fang, Tao; Bork, Peer; Jensen, Lars J; von Mering, Christian (2021). The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets. Nucleic Acids Research, 49(D1):D605-D612.

Kubacki, Jakub; Hardmeier, Isabelle; Qi, Weihong; Flacio, Eleonora; Tonolla, Mauro; Fraefel, Cornel (2021). Complete genome sequence of a Rhabdovirus strain from culex mosquitos collected in Southern Switzerland. Microbiology Resource Announcements, 10(1):e01234-20.

Keles, Esin; Malama, Eleni; Bozukova, Siyka; Siuda, Mathias; Wyck, Sarah; Witschi, Ulrich; Bauersachs, Stefan; Bollwein, Heinrich (2021). The micro-RNA content of unsorted cryopreserved bovine sperm and its relation to the fertility of sperm after sex-sorting. BMC Genomics, 22(1):30.

Haug, Patricia; Koller, Samuel; Maggi, Jordi; Lang, Elena; Feil, Silke; Wlodarczyk, Agnès; Bähr, Luzy; Steindl, Katharina; Rohrbach, Marianne; Gerth-Kahlert, Christina; Berger, Wolfgang (2021). Whole Exome Sequencing in Coloboma/Microphthalmia: Identification of Novel and Recurrent Variants in Seven Genes. Genes, 12(1):E65.

Ferreira, Carlos R; Rahman, Shamima; Keller, Markus; Zschocke, Johannes; Baumgartner, Matthias R; et al (2021). An International Classification of Inherited Metabolic Disorders (ICIMD). Journal of Inherited Metabolic Disease, 44:164-177.

Sticco, Matthew J; Peña Palomino, Perla A; Lukacsovich, David; Thompson, Brianna L; Földy, Csaba; Ressl, Susanne; Martinelli, David C (2021). C1QL3 promotes cell‐cell adhesion by mediating complex formation between ADGRB3/BAI3 and neuronal pentraxins. FASEB Journal, 35(1):e21194.

Brown, Steven A; Sinues, Pablo (2021). Circadian Metabolomics from Breath. In: Brown, Steven A. Circadian Clocks : Methods and Protocols. New York: Springer, 149-156.

Zabulica, Mihaela; Srinivasan, Raghuraman C; Akcakaya, Pinar; Allegri, Gabriella; Bestas, Burcu; Firth, Mike; Hammarstedt, Christina; Jakobsson, Tomas; Jakobsson, Towe; Ellis, Ewa; Jorns, Carl; Makris, Georgios; Scherer, Tanja; Rimann, Nicole; van Zuydam, Natalie R; Gramignoli, Roberto; Forslöw, Anna; Engberg, Susanna; Maresca, Marcello; Rooyackers, Olav; Thöny, Beat; Häberle, Johannes; Rosen, Barry; Strom, Stephen C (2021). Correction of a urea cycle defect after ex vivo gene editing of human hepatocytes. Molecular Therapy, 29(5):1903-1917.

Hörster, Friederike; Tuncel, Ali Tunç; Gleich, Florian; Plessl, Tanja; Froese, Sean D; Garbade, Sven F; Kölker, Stefan; Baumgartner, Matthias R (2021). Delineating the clinical spectrum of isolated methylmalonic acidurias: cblA and mut. Journal of Inherited Metabolic Disease, 44(1):193-214.

Tayyrov, Annageldi; Schnetzler, Michèle; Gillis-Germitsch, Nina; Schnyder, Manuela (2021). Genetic diversity of the cardiopulmonary canid nematode Angiostrongylus vasorum within and between rural and urban fox populations. Infection, Genetics and Evolution, 87:104618.

Carraro, Luca; Stauffer, Julian B; Altermatt, Florian (2021). How to design optimal eDNA sampling strategies for biomonitoring in river networks. Environmental DNA, 3(1):157-172.

Thieme, Michael; Roulin, Anne C (2021). Identification of Active Transposable Elements in Plants: The Mobilome-Seq Approach. In: Cho, Jungnam. Plant Transposable Elements. New York: Springer, 95-102.

Hopp, Ann-Katrin; Hottiger, Michael O (2021). Investigation of Mitochondrial Via Immunofluorescence. In: Weissig, V; Edeas, M. Mitochondiral Medicine. New York: Springer, 165-171.

Du, Ngoc-Hien; Brown, Steven A (2021). Measuring Circadian Rhythms in Human Cells. In: Brown, Steven A. Circadian Clocks : Methods and Protocols. New York: Springer, 53-67.

Dimitrov, Bianca; Molema, Femke; Williams, Monique; Schmiesing, Jessica; Mühlhausen, Chris; Baumgartner, Matthias R; Schumann, Anke; Kölker, Stefan (2021). Organic acidurias: Major gaps, new challenges, and a yet unfulfilled promise. Journal of Inherited Metabolic Disease, 44(1):9-21.

Gysin, Tina; Kowalewski, Mariusz P (2021). The involvement of hypoxia-inducible factor 1α (HIF1α)-stabilising factors in steroidogenic acute regulatory (STAR) protein-dependent steroidogenesis in murine KK1 granulosa cells in vitro. Reproduction, Fertility and Development, 33(18):865-880.

Salzmann, Andrea Patrizia; Bamberg, Malte; Courts, Cornelius; Dorum, Guro; Gosch, Annica; Hadrys, Thorsten; Hadzic, Gavrilo; Neis, Maximilian; Schneider, Peter M; Sijen, Titia; van den Berge, Margreet; Wiegand, Peter; Haas, Cordula (2021). mRNA profiling of mock casework samples: Results of a FoRNAP collaborative exercise. Forensic Science International. Genetics, 50:102409.

Demange, Perline A; Malanchini, Margherita; Mallard, Travis T; Biroli, Pietro; Cox, Simon R; Grotzinger, Andrew D; Tucker-Drob, Elliot M; Abdellaoui, Abdel; Arseneault, Louise; van Bergen, Elsje; Boomsma, Dorret I; Caspi, Avshalom; Corcoran, David L; Domingue, Benjamin W; Harris, Kathleen Mullan; Ip, Hill F; Mitchell, Colter; Moffitt, Terrie E; Poulton, Richie; Prinz, Joseph A; Sugden, Karen; Wertz, Jasmin; Williams, Benjamin S; de Zeeuw, Eveline L; Belsky, Daniel W; Harden, K Paige; Nivard, Michel G (2021). Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction. Nature Genetics, 53(1):35-44.

Mun, YeVin; Nombela-Arrieta, César (2021). 3D Microscopy of Murine Bone Marrow Hematopoietic Tissues. Methods in Molecular Biology, 2308:127-138.

Gnoli, Maria; Brizola, Evelise; Tremosini, Morena; Pedrini, Elena; Maioli, Margherita; Mosca, Massimiliano; Bassotti, Alessandra; Castronovo, Paola; Giunta, Cecilia; Sangiorgi, Luca (2021). COL1-Related Disorders: Case Report and Review of Overlapping Syndromes. Frontiers in Genetics, 12:640558.

Pischedda, Sara; O’Connor, Daniel; Fairfax, Benjamin P; Salas, Antonio; Martinon-Torres, Federico; Pollard, Andrew J; Trück, Johannes (2021). Changes in epigenetic profiles throughout early childhood and their relationship to the response to pneumococcal vaccination. Clinical Epigenetics, 13:29.

Mujakić, Izabela; Andrei, Adrian-Stefan; Shabarova, Tanja; Fecskeová, Lívia Kolesár; Salcher, Michaela M; Piwosz, Kasia; Ghai, Rohit; Koblížek, Michal (2021). Common Presence of Phototrophic Gemmatimonadota in Temperate Freshwater Lakes. mSystems, 6(2):01241-20.

Lichtensteiger, Walter; Bassetti-Gaille, Catherine; Rehrauer, Hubert; Georgijevic, Jelena Kühn; Tresguerres, Jesus A F; Schlumpf, Margret (2021). Converging Effects of Three Different Endocrine Disrupters on Sox and Pou Gene Expression in Developing Rat Hippocampus: Possible Role of microRNA in Sex Differences. Frontiers in Genetics, 12:718796.

Stritt, Christoph; Roulin, Anne C (2021). Detecting Signatures of TE Polymorphisms in Short-Read Sequencing Data. In: Cho, Jungnam. Plant transposable elements. New York: Springer, 177-187.

Vasiljevic, Nina; Lim, Marisa; Humble, Emily; Seah, Adeline; Kratzer, Adelgunde; Morf, Nadja V; Prost, Stefan; Ogden, Rob (2021). Developmental validation of Oxford Nanopore Technology MinION sequence data and the NGSpeciesID bioinformatic pipeline for forensic genetic species identification. Forensic Science International. Genetics, 53:102493.

Cervantes-Gracia, Karla; Chahwan, Richard; Husi, Holger (2021). Integrative Analysis of Incongruous Cancer Genomics and Proteomics Datasets. Methods in Molecular Biology, 2361:291-305.

Schumann, Anke; Belche, Véronique; Schaller, Kristin; Grünert, Sarah C; Kaech, Andres; Baumgartner, Matthias R; Kölker, Stefan; Hannibal, Luciana; Spiekerkoetter, Ute (2021). Mitochondrial damage in renal epithelial cells is potentiated by protein exposure in propionic aciduria. Journal of Inherited Metabolic Disease, 44(6):1330-1342.

Lim, Pei Jin; Marfurt, Severin; Lindert, Uschi; Opitz, Lennart; Ndarugendamwo, Timothée; Srikanthan, Pakeerathan; Poms, Martin; Hersberger, Martin; Langhans, Claus-Dieter; Haas, Dorothea; Rohrbach, Marianne; Giunta, Cecilia (2021). Omics Profiling of S2P Mutant Fibroblasts as a Mean to Unravel the Pathomechanism and Molecular Signatures of X-Linked MBTPS2 Osteogenesis Imperfecta. Frontiers in Genetics, 12:662751.

2020

Amaral, Ana R; Chanfana, Cátia; Smith, Brian D; Mansur, Rubaiyat; Collins, Tim; Baldwin, Robert; Minton, Gianna; Parra, Guido J; Krützen, Michael; Jefferson, Thomas A; Karczmarski, Leszek; Guissamulo, Almeida; Brownell, Robert L; Rosenbaum, Howard C (2020). Genomics of Population Differentiation in Humpback Dolphins, Sousa spp. in the Indo-Pacific Ocean. Journal of Heredity, 111(7):652-660.

Marin-Gonzalez, Alberto; Aicart-Ramos, Clara; Marin-Baquero, Mikel; Martín-González, Alejandro; Suomalainen, Maarit; Kannan, Abhilash; Vilhena, J G; Greber, Urs F; Moreno-Herrero, Fernando; Pérez, Rubén (2020). Double-stranded RNA bending by AU-tract sequences. Nucleic Acids Research, 48(22):12917-12928.

Charmpi, Konstantina; Guo, Tiannan; Zhong, Qing; Wagner, Ulrich; Sun, Rui; Toussaint, Nora C; Fritz, Christine E; Yuan, Chunhui; Chen, Hao; Rupp, Niels J; Christiansen, Ailsa; Rutishauser, Dorothea; Rüschoff, Jan H; Fankhauser, Christian; Saba, Karim; Poyet, Cedric; Hermanns, Thomas; Oehl, Kathrin; Moore, Ariane L; Beisel, Christian; Calzone, Laurence; Martignetti, Loredana; Zhang, Qiushi; Zhu, Yi; Martínez, María Rodríguez; Manica, Matteo; Haffner, Michael C; Aebersold, Ruedi; Wild, Peter J; Beyer, Andreas (2020). Convergent network effects along the axis of gene expression during prostate cancer progression. Genome Biology, 21:302.

O'Reilly, Daniel; Crushell, Ellen; Hughes, Joanne; et al; Rüfenacht, Véronique; Häberle, Johannes (2020). Maple syrup urine disease: Clinical outcomes, metabolic control, and genotypes in a screened population after four decades of newborn bloodspot screening in the Republic of Ireland. Journal of Inherited Metabolic Disease, 44(3):639-655.

Huemer, Markus; Mairpady Shambat, Srikanth; Brugger, Silvio D; Zinkernagel, Annelies S (2020). Antibiotic resistance and persistence—Implications for human health and treatment perspectives. EMBO Reports, 21(12):0.

Tiberi, Simone; Robinson, Mark D (2020). BANDITS: Bayesian differential splicing accounting for sample-to-sample variability and mapping uncertainty. Genome Biology, 21:69.

Kartal, Önder; Schmid, Marc W; Grossniklaus, Ueli (2020). Cell type-specific genome scans of DNA methylation divergence indicate an important role for transposable elements. Genome Biology, 21:172.

Antoine, Daniel James; Williams, Dominic P; Kipar, Anja; Laverty, Hugh; Park, B Kevin (2020). Expression of Concern to: Diet restriction inhibits apoptosis and HMGB1 oxidation and promotes inflammatory cell recruitment during acetaminophen hepatoxicity. Molecular Medicine, 26:13.

Koenen, Erik J M; Kidner, Catherine; de Souza, Élvia R; Simon, Marcelo F; Iganci, João R; Nicholls, James A; Brown, Gillian K; de Queiroz, Luciano P; Luckow, Melissa; Lewis, Gwilym P; Pennington, R Toby; Hughes, Colin E (2020). Hybrid capture of 964 nuclear genes resolves evolutionary relationships in the mimosoid legumes and reveals the polytomous origins of a large pantropical radiation. American Journal of Botany, 107(12):1710-1735.

Fowler, Anna; Galson, Jacob D; Trück, Johannes; Kelly, Dominic F; Lunter, Gerton (2020). Inferring B cell specificity for vaccines using a Bayesian mixture model. BMC Genomics, 21:176.

Martens, Helge; Hennies, Imke; Getwan, Maike; Christians, Anne; Weiss, Anna-Carina; Brand, Frank; Gjerstad, Ann Christin; Christians, Arne; Gucev, Zoran; Geffers, Robert; Seeman, Tomáš; Kispert, Andreas; Tasic, Velibor; Bjerre, Anna; Lienkamp, Soeren Sten; Haffner, Dieter; Weber, Ruthild G (2020). Rare heterozygous GDF6 variants in patients with renal anomalies. European Journal of Human Genetics, 28(12):1681-1693.

Holderegger, Rolf; Schmidt, Benedikt R; Grünig, Christoph; Meier, Robert; Csencsics, Daniela; Gassner, Martin; Rellstab, Christian; Stapfer, André (2020). Ready-to-use workflows for the implementation of genetic tools in conservation management. Conservation Genetics Resources, 12(4):691-700.

Antoine, Daniel James; Williams, Dominic P; Kipar, Anja; Laverty, Hugh; Park, B Kevin (2020). Retraction Note: Diet restriction inhibits apoptosis and HMGB1 oxidation and promotes inflammatory cell recruitment during acetaminophen hepatotoxicity. Molecular Medicine, 26(1):130.

Thomas, Christoph; Aller, Stephen G; Beis, Konstantinos; Carpenter, Elisabeth P; et al; Martinoia, Enrico (2020). Structural and functional diversity calls for a new classification of ABC transporters. FEBS letters, 594(23):3767-3775.

Primo, Pasquale; Meccariello, Angela; Inghilterra, Maria Grazia; Gravina, Andrea; Del Corsano, Giuseppe; Volpe, Gennaro; Sollazzo, Germano; Aceto, Serena; Robinson, Mark D; Salvemini, Marco; Saccone, Giuseppe (2020). Targeting the autosomal Ceratitis capitata transformer gene using Cas9 or dCas9 to masculinize XX individuals without inducing mutations. BMC Genetics, 21(Suppl 2):150.

Feller, Anita; Matthes, Katarina L; Bordoni, Andrea; Bouchardy, Christine; Bulliard, Jean-Luc; Herrmann, Christian; Konzelmann, Isabelle; Maspoli, Manuela; Mousavi, Mohsen; Rohrmann, Sabine; Staehelin, Katharina; Arndt, Volker (2020). The relative risk of second primary cancers in Switzerland: a population-based retrospective cohort study. BMC Cancer, 20:51.

Hecht, Markus; Hahn, Dennis; Wolber, Philipp; Hautmann, Matthias G; Reichert, Dietmar; Weniger, Steffi; Belka, Claus; Bergmann, Tobias; Göhler, Thomas; Welslau, Manfred; Große-Thie, Christina; Guntinas-Lichius, Orlando; von der Grün, Jens; Balermpas, Panagiotis; Orlowski, Katrin; Messinger, Diethelm; Stenzel, Karsten G; Fietkau, Rainer (2020). Treatment response lowers tumor symptom burden in recurrent and/or metastatic head and neck cancer. BMC Cancer, 20(933):1-11.

Lopes, Patricia C; König, Barbara (2020). Wild mice with different social network sizes vary in brain gene expression. BMC Genomics, 21:506.

Germain, Pierre-Luc; Sonrel, Anthony; Robinson, Mark D (2020). pipeComp, a general framework for the evaluation of computational pipelines, reveals performant single cell RNA-seq preprocessing tools. Genome Biology, 21(1):227.

Caduff, Nicole; McHugh, Donal; Murer, Anita; Rämer, Patrick; Raykova, Ana; Landtwing, Vanessa; Rieble, Lisa; Keller, Christian W; Prummer, Michael; Hoffmann, Laurent; Lam, Janice K P; Chiang, Alan K S; Raulf, Friedrich; Azzi, Tarik; Berger, Christoph; Rubic-Schneider, Tina; Traggiai, Elisabetta; Lünemann, Jan D; Kammüller, Michael; Münz, Christian (2020). Correction: Immunosuppressive FK506 treatment leads to more frequent EBV-associated lymphoproliferative disease in humanized mice. PLoS Pathogens, 16(12):e1009167.

Giangiobbe, Sara; Caraffi, Stefano Giuseppe; Ivanovski, Ivan; Maini, Ilenia; Pollazzon, Marzia; et al (2020). Expanding the phenotype of Wiedemann-Steiner syndrome: Craniovertebral junction anomalies. American Journal of Medical Genetics. Part A, 182(12):2877-2886.

Roifman, Maian; Niles, Kirsten M; MacNeil, Lauren; Blaser, Susan; Noor, Abdul; Godoy, Ruth; van Mieghem, Tim; Ryan, Greg; Seaward, Gareth; Sondheimer, Neal; Mercimek-Andrews, Saadet; Schulze, Andreas; Hewson, Stacy; Ovadia, Adi; Chitayat, David; Morgen, Eric K; Hojilla, Carlo; Kolomietz, Elena; Watkins, Nicholas; Häberle, Johannes; Shannon, Patrick (2020). Homozygous GLUL deletion is embryonically viable and leads to glutamine synthetase deficiency. Clinical Genetics, 98(6):613-619.

San Roman, Magdalena; Wagner, Andreas (2020). Acetate and glycerol are not uniquely suited for the evolution of cross-feeding in E. coli. PLoS Computational Biology, 16(11):e1008433.

Bordignon, Enrica; Seeger, Markus A; Galazzo, Laura; Meier, Gianmarco (2020). From in vitro towards in situ: structure-based investigation of ABC exporters by electron paramagnetic resonance spectroscopy. FEBS letters, 594:3839-3856.

Buruck, Gabriele; Pfarr, Anna-Lisa; Penz, Marlene; Wekenborg, Magdalena K; Rothe, Nicole; Walther, Andreas (2020). The Influence of Workload and Work Flexibility on Work-Life Conflict and the Role of Emotional Exhaustion. Behavioral Sciences, 10(11):174.

Wambui, Joseph; Cernela, Nicole; Stevens, Marc J A; Ghielmetti, Giovanni; Stephan, Roger (2020). Draft genome sequences of two clostridium algidicarnis strains isolated from meat juice samples of chilled vacuum-packed lamb meat. Microbiology Resource Announcements, 9(45):e00983-20.

Wyler, Michele; Stritt, Christoph; Walser, Jean-Claude; Baroux, Célia; Roulin, Anne C (2020). Impact of transposable elements on methylation and gene expression across natural accessions of Brachypodium distachyon. Genome Biology and Evolution, 12(11):1994-2001.

Sokolowska, Milena (2020). Outsmarting SARS-CoV-2 by empowering a decoy ACE2. Signal Transduction and Targeted Therapy, 5(1):260.

Gesemann, Matthias; Neuhauss, Stephan C F (2020). Selective Gene Loss of Visual and Olfactory Guanylyl Cyclase Genes Following the Two Rounds of Vertebrate-Specific Whole-Genome Duplications. Genome Biology and Evolution, 12(11):2153-2167.

Rellstab, Christian; Zoller, Stefan; Sailer, Christian; Tedder, Andrew; Gugerli, Felix; Shimizu, Kentaro K; Holderegger, Rolf; Widmer, Alex; Fischer, Martin C (2020). Genomic signatures of convergent adaptation to Alpine environments in three Brassicaceae species. Molecular Ecology, 29(22):4350-4365.

Picart-Picolo, Ariadna; Grob, Stefan; Picault, Nathalie; Franek, Michal; Llauro, Christel; Halter, Thierry; Maier, Tom R; Jobet, Edouard; Descombin, Julie; Zhang, Panpan; Paramasivan, Vijayapalani; Baum, Thomas J; Navarro, Lionel; Dvořáčková, Martina; Mirouze, Marie; Pontvianne, Frédéric (2020). Large tandem duplications affect gene expression, 3D organization, and plant–pathogen response. Genome Research, 30(11):1583-1592.

Epting, Daniel; Senaratne, Lokuliyange D S; Ott, Elisabeth; Holmgren, Asbjørn; Sumathipala, Dulika; et al; Lienkamp, Soeren Sten (2020). Loss of CBY1 results in a ciliopathy characterized by features of Joubert syndrome. Human Mutation, 41(12):2179-2194.

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