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2024

Dos Anjos Souza, Vinícius Ribeiro; Vivan, Lavínia; Seffrin, Aldo; Vallini, Lucca; de Paula Domingos, Fabio; de Lira, Claudio Andre Barbosa; Vancini, Rodrigo Luiz; Weiss, Katja; Rosemann, Thomas; Knechtle, Beat; Andrade, Marilia Santos (2024). Impact of aging on maximal oxygen uptake in female runners and sedentary controls. Experimental Gerontology, 193:112476.

Bhatia, Sonal; Le Cam, Yann; Carrion, Juan; Diamond, Lauren; Fennessy, Paul; Gassman, Safiyya; Gutzwiller, Felix; Kagan, Stephen; Pankevich, Diana; Young Maloney, Jennifer; Mahadev, Nitin; Schulz, Martin; Wong-Rieger, Durhane; Morgese, Paolo (2024). Strengthening health systems for access to gene therapy in rare genetic disorders. Molecular Therapy - Methods & Clinical Development, 32(2):101220.

Meier-Abt, Fabienne; Kraemer, Dennis; Braun, Nils; Reinehr, Michael; Stutz-Grunder, Eveline; Steindl, Katharina; Rauch, Anita (2024). Further evidence that the neurodevelopmental gene FBXW7 predisposes to Wilms tumor. American Journal of Medical Genetics. Part A, 194(6):e63528.

Caraffi, Stefano Giuseppe; van der Laan, Liselot; Rooney, Kathleen; Trajkova, Slavica; Zuntini, Roberta; Relator, Raissa; Haghshenas, Sadegheh; Levy, Michael A; Baldo, Chiara; Mandrile, Giorgia; Lauzon, Carolyn; Cordelli, Duccio Maria; Ivanovski, Ivan; Fetta, Anna; Sukarova, Elena; Brusco, Alfredo; Pavinato, Lisa; Pullano, Verdiana; Zollino, Marcella; McConkey, Haley; Tartaglia, Marco; Ferrero, Giovanni Battista; Sadikovic, Bekim; Garavelli, Livia (2024). Identification of the DNA methylation signature of Mowat-Wilson syndrome. European Journal of Human Genetics, 32(6):619-629.

Marash, Iftah; Leibman-Markus, Meirav; Gupta, Rupali; Israeli, Alon; Teboul, Naama; Avni, Adi; Ori, Naomi; Bar, Maya (2024). Abolishing ARF8A activity promotes disease resistance in tomato. Plant Science, 343:112064.

Hamdi, Meriem; Sánchez, José María; Fernandez-Fuertes, Beatriz; Câmara, Diogo Ribeiro; Bollwein, Heinrich; Rizos, Dimitrios; Bauersachs, Stefan; Almiñana, Carmen (2024). Oviductal extracellular vesicles miRNA cargo varies in response to embryos and their quality. BMC Genomics, 25(1):520.

Schmidt, Robin; Dufresnes, Christophe; Krištín, Anton; Künzel, Sven; Vences, Miguel; Hawlitschek, Oliver (2024). Phylogenetic insights into Central European Chorthippus and Pseudochorthippus (Orthoptera: Acrididae) species using ddRADseq data. Molecular Phylogenetics and Evolution, 193:108012.

Smith, Ellery; Paloots, Rahel; Giagkos, Dimitris; Baudis, Michael; Stockinger, Kurt (2024). Data-driven information extraction and enrichment of molecular profiling data for cancer cell lines. Bioinformatics advances, 4(1):vbae045.

Ren, Wuwei; Ni, Ruiqing (2024). Noninvasive Visualization of Amyloid-Beta Deposits in Alzheimer’s Amyloidosis Mice via Fluorescence Molecular Tomography Using Contrast Agent. In: Perneczky, Robert. Biomarkers for Alzheimer’s Disease Drug Development. New York, NY: Springer, 271-285.

Schiestl, Florian P (2024). Is experimental evolution relevant for botanical research? American Journal of Botany, 111(3):e16296.

Klinnert, Sarah; Schenkel, Corinne D; Freitag, Patrick C; Günthard, Huldrych F; Plückthun, Andreas; Metzner, Karin J (2024). Targeted shock-and-kill HIV-1 gene therapy approach combining CRISPR activation, suicide gene tBid and retargeted adenovirus delivery. Gene Therapy, 31(3-4):74-84.

Finocchio, Giada; Koopal, Balwina; Potocnik, Ana; Heijstek, Clint; Westphal, Adrie H; Jinek, Martin; Swarts, Daan C (2024). Target DNA-dependent activation mechanism of the prokaryotic immune system SPARTA. Nucleic Acids Research, 52(4):2012-2029.

Rupasinghe, Meneka; Bersaglieri, Cristiana; Leslie Pedrioli, Deena M; Pedrioli, Patrick Ga; Panatta, Martina; Hottiger, Michael O; Cinelli, Paolo; Santoro, Raffaella (2024). PRAMEL7 and CUL2 decrease NuRD stability to establish ground-state pluripotency. EMBO Reports, 25(3):1453-1468.

Benvenga, Vanni; Cuénod, Aline; Purushothaman, Srinithi; Dasen, Gottfried; Weisser, Maja; Bassetti, Stefano; Roloff, Tim; Siegemund, Martin; Heininger, Ulrich; Bielicki, Julia; Wehrli, Marianne; Friderich, Paul; Frei, Reno; Widmer, Andreas; Herzog, Kathrin; Fankhauser, Hans; Nolte, Oliver; Bodmer, Thomas; Risch, Martin; Dubuis, Olivier; Pranghofer, Sigrid; Calligaris-Maibach, Romana; Graf, Susanne; Perreten, Vincent; Seth-Smith, Helena M B; Egli, Adrian (2024). Historic methicillin-resistant Staphylococcus aureus: expanding current knowledge using molecular epidemiological characterization of a Swiss legacy collection. Genome Medicine, 16(1):23.

Camenzind, Marcela; Koller, Teresa; Armbruster, Cygni; Jung, Esther; Brunner, Susanne; Herren, Gerhard; Keller, Beat (2024). Breeding for durable resistance against biotrophic fungal pathogens using transgenes from wheat. Molecular Breeding, 44(2):8.

Nevado, Bruno; Atchison, Guy W; Bridges, Edwin L; Orzell, Steve; Filatov, Dmitry; Hughes, Colin E (2024). Pleistocene diversification of unifoliolate-leaved Lupinus (Leguminosae: Papilionoideae) in Florida. Molecular Ecology, 33(3):e17232.

Erkner, Estelle; Hentrich, Thomas; Schairer, Rebekka; Fitzel, Rahel; Secker-Grob, Kathy-Ann; Jeong, Johan; Keppeler, Hildegard; Korkmaz, Fulya; Schulze-Hentrich, Julia M; Lengerke, Claudia; Schneidawind, Dominik; Schneidawind, Corina (2024). The RORɣ/SREBP2 pathway is a master regulator of cholesterol metabolism and serves as potential therapeutic target in t(4;11) leukemia. Oncogene, 43(4):281-293.

Mai, Dat; Jahn, Ana; Murray, Tara; Morikubo, Michael; Lim, Pamelia N; Cervantes, Maritza M; Pham, Linh K; Nemeth, Johannes; Urdahl, Kevin; Diercks, Alan H; Aderem, Alan; Rothchild, Alissa C (2024). Exposure to Mycobacterium remodels alveolar macrophages and the early innate response to Mycobacterium tuberculosis infection. PLoS Pathogens, 20(1):e1011871.

Hofer, Cyrill; Wälchli, Denise; Moncadas, Lucas Serra; Rain-Franco, Angel; Andrei, Adrian-Stefan (2024). A high-quality genome of an undescribed Flavobacterium species uncovered using Q20+ Nanopore chemistry. Microbiology Resource Announcements, 13(1):online.

Mastall, Maximilian; Roth, Patrick; Bink, Andrea; Fischer Maranta, Angela; Läubli, Heinz; Hottinger, Andreas Felix; Hundsberger, Thomas; Migliorini, Denis; Ochsenbein, Adrian; Seystahl, Katharina; Imbach, Lukas; Hortobágyi, Tibor; Held, Leonhard; Weller, Michael; Wirsching, Hans-Georg (2024). A phase Ib/II randomized, open-label drug repurposing trial of glutamate signaling inhibitors in combination with chemoradiotherapy in patients with newly diagnosed glioblastoma: the GLUGLIO trial protocol. BMC Cancer, 24(1):82.

Martinez, Michael; Harding, Cary O; Schwank, Gerald; Thöny, Beat (2024). State-of-the-art 2023 on gene therapy for phenylketonuria. Journal of Inherited Metabolic Disease, 47(1):80-92.

Ruchti, Fiorella; Tuor, Meret; Mathew, Liya; McCarthy, Neil E; LeibundGut-Landmann, Salomé (2024). γδ T cells respond directly and selectively to the skin commensal yeast Malassezia for IL-17-dependent fungal control. PLoS Pathogens, 20(1):e1011668.

Jungfer, Kenny; Sigg, Annina; Jinek, Martin (2024). Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2. Nucleic Acids Research, 52(1):462-473.

Makris, Georgios; Veit, Lara; Rüfenacht, Véronique; Klassa, Sven; Zürcher, Nadia; Matsumoto, Shirou; Poms, Martin; Häberle, Johannes (2024). Expression and function of the urea cycle in widely-used hepatic cellular models. Journal of Inherited Metabolic Disease:Epub ahead of print.

SIB Swiss Institute of Bioinformatics RDF Group Members (2024). The SIB Swiss Institute of Bioinformatics Semantic Web of data. Nucleic Acids Research, 52(D1):D44-D51.

Sollier, Julie; Basler, Marek; Broz, Petr; Dittrich, Petra S; Drescher, Knut; Egli, Adrian; Harms, Alexander; Hierlemann, Andreas; Hiller, Sebastian; King, Carolyn G; McKinney, John D; Moran-Gilad, Jacob; Neher, Richard A; Page, Malcolm G P; Panke, Sven; Persat, Alexandre; Picotti, Paola; Rentsch, Katharina M; Rivera-Fuentes, Pablo; Sauer, Uwe; Stolz, Daiana; Tschudin-Sutter, Sarah; van Delden, Christian; van Nimwegen, Erik; Veening, Jan-Willem; Zampieri, Mattia; Zinkernagel, Annelies S; Khanna, Nina; Bumann, Dirk; Jenal, Urs; et al (2024). Revitalizing antibiotic discovery and development through in vitro modelling of in-patient conditions. Nature Microbiology, 9(1):1-3.

González-Acosta, Daniel; Lopes, Massimo (2024). DNA replication and replication stress response in the context of nuclear architecture. Chromosoma, 133(1):57-75.

Olivares, Ingrid; Tusso, Sergio; José Sanín, María; de La Harpe, Marylaure; Loiseau, Oriane; Rolland, Jonathan; Salamin, Nicolas; Kessler, Michael; Shimizu, Kentaro K; Paris, Margot (2024). Hyper-Cryptic radiation of a tropical montane plant lineage. Molecular Phylogenetics and Evolution, 190:107954.

Rhodes, Jack; Zipfel, Cyril (2024). Identification of Bioactive Phytocytokines Using Transcriptomic Data and Plant Bioassays. In: Schaller, Andreas. Plant Peptide Hormones and Growth Factors. New York: Springer, 23-35.

Volkova, Yulia L; Jucht, Agnieszka E; Scholz, Carsten C (2024). Oxomer- and Reporter Gene-Based Analysis of FIH Activity in Cells. In: Gilkes, Daniele M. Oxomer-and Reporter Gene-Based Analysis of FIH Activity in Cells. Zürich, Switzerland: Springer, 249-264.

Gupta, Shibu; Guérin, Amandine; Herger, Aline; Hou, Xiaoyu; Schaufelberger, Myriam; Roulard, Romain; Diet, Anouck; Roffler, Stefan; Lefebvre, Valérie; Wicker, Thomas; Pelloux, Jérôme; Ringli, Christoph (2024). Growth-inhibiting effects of the unconventional plant APYRASE 7 of Arabidopsis thaliana influences the LRX/RALF/FER growth regulatory module. PLoS Genetics, 20(1):e1011087.

Dørum, Guro; Hänggi, Nadescha Viviane; Burri, Dario; Marti, Yael; Banemann, Regine; Kulstein, Galina; Courts, Cornelius; Gosch, Annica; Hadrys, Thorsten; Haas, Cordula; Neubauer, Jacqueline (2024). Selecting mRNA markers in blood for age estimation of the donor of a biological stain. Forensic Science International. Genetics, 68:102976.

El Hadad, Jasmina; Schreiner, Philipp; Vavricka, Stephan R; Greuter, Thomas (2024). The Genetics of Inflammatory Bowel Disease. Molecular Diagnosis & Therapy, 28(1):27-35.

Głogowski, Robert; Clauss, Marcus; Bełżecki, Grzegorz (2024). Biochemical properties and hydrolytic activity in the nutria (Myocastor coypus) digestive tract. Animal science and genetics, 20(1):3-10.

2023

Chanou, Anna; Weiβ, Matthias; Holler, Karoline; Sajid, Atiqa; Straub, Tobias; Krietsch, Jana; Sanchi, Andrea; Ummethum, Henning; Lee, Clare S K; Kruse, Elisabeth; Trauner, Manuel; Werner, Marcel; Lalonde, Maxime; Lopes, Massimo; Scialdone, Antonio; Hamperl, Stephan (2023). Single molecule MATAC-seq reveals key determinants of DNA replication origin efficiency. Nucleic Acids Research, 51(22):12303-12324.

Tröndle, Kevin; Rizzo, Ludovica; Pichler, Roman; Zimmermann, Stefan; Lienkamp, Soeren S (2023). Flow induces common and specific transcriptional changes in renal tubular epithelial cells involving the PI3K pathway. FASEB Journal, 38(1):e23329.

Erdem, Özge; de Graaff, Jurgen C; Hilty, Matthias P; Kraemer, Ulrike S; de Liefde, Inge I; van Rosmalen, Joost; Ince, Can; Tibboel, Dick; Kuiper, Jan Willem (2023). Microcirculatory Monitoring in Children with Congenital Heart Disease Before and After Cardiac Surgery. Journal of Cardiovascular Translational Research, 16(6):1333-1342.

Eichinger, Johanna; Zimmermann, Bettina; Elger, Bernice; McLennan, Stuart; Filges, Isabel; Koné, Insa (2023). ‘It’s a nightmare’: informed consent in paediatric genome-wide sequencing. A qualitative expert interview study from Germany and Switzerland. European Journal of Human Genetics, 31(12):1398-1406.

Nagyova, Emilia; Hoorntje, Edgar T; Te Rijdt, Wouter P; Bosman, Laurens P; Syrris, Petros; Protonotarios, Alexandros; Elliott, Perry M; Tsatsopoulou, Adalena; Mestroni, Luisa; Taylor, Matthew R G; Sinagra, Gianfranco; Merlo, Marco; Wada, Yuko; Horie, Minoru; Mogensen, Jens; Christensen, Alex H; Gerull, Brenda; Song, Lei; Yao, Yan; Fan, Siyang; Saguner, Ardan M; Duru, Firat; Koskenvuo, Juha W; Cruz Marino, Tania; Tichnell, Crystal; Judge, Daniel P; Dooijes, Dennis; Lekanne Deprez, Ronald H; Basso, Cristina; Pilichou, Kalliopi; et al (2023). A Systematic Analysis of the Clinical Outcome Associated with Multiple Reclassified Desmosomal Gene Variants in Arrhythmogenic Right Ventricular Cardiomyopathy Patients. Journal of Cardiovascular Translational Research, 16(6):1276-1286.

Lutz, Stefanie; Bodenhausen, Natacha; Hess, Julia; Valzano-Held, Alain; Waelchli, Jan; Deslandes-Hérold, Gabriel; Schlaeppi, Klaus; van der Heijden, Marcel G A (2023). Soil microbiome indicators can predict crop growth response to large-scale inoculation with arbuscular mycorrhizal fungi. Nature Microbiology, 8(12):2277-2289.

Arango-Isaza, Epifanía; Aninao, María José; Campbell, Roberto; Martinez, Felipe I; Shimizu, Kentaro K; Barbieri, Chiara (2023). Bridging the gap: returning genetic results to indigenous communities in Latin America. Frontiers in Genetics, 14:1304974.

Ruiz-Babot, Gerard; Eceiza, Ariane; Abollo-Jiménez, Fernando; Malyukov, Maria; Carlone, Diana L; Borges, Kleiton; Da Costa, Alexandra Rodrigues; Qarin, Shamma; Matsumoto, Takuya; Morizane, Ryuji; Skarnes, William C; Ludwig, Barbara; Chapple, Paul J; Guasti, Leonardo; Storr, Helen L; Bornstein, Stefan R; Breault, David T (2023). Generation of glucocorticoid-producing cells derived from human pluripotent stem cells. Cell Reports Methods, 3(11):100627.

Kirschner, Dominik; Zhang, Yan; Zhong, Wenjun; Zhang, Xiaowei; Pellissier, Loïc; Altermatt, Florian (2023). Homogeneity in terrestrial land cover is reflected in fish diversity patterns in a Chinese river system. Environmental DNA, 5(6):1679-1690.

Dengler Haunreiter, Vanina; Tarnutzer, Andrea; Bär, Julian; von Matt, Manuela; Hertegonne, Sanne; Andreoni, Federica; Vulin, Clément; Künzi, Lisa; Menzi, Carmen; Kiefer, Patrick; Christen, Philipp; Vorholt, Julia A; Zinkernagel, Annelies S (2023). C-di-AMP levels modulate Staphylococcus aureus cell wall thickness, response to oxidative stress, and antibiotic resistance and tolerance. Microbiology Spectrum, 11(6):e0278823.

Wallace, Eric L; Goker-Alpan, Ozlem; Wilcox, William R; Holida, Myrl; Bernat, John; Longo, Nicola; Linhart, Aleš; Hughes, Derralynn A; Hopkin, Robert J; Tøndel, Camilla; Langeveld, Mirjam; Giraldo, Pilar; Pisani, Antonio; Germain, Dominique Paul; Mehta, Ankit; Deegan, Patrick B; Molnar, Maria Judit; Ortiz, Damara; Jovanovic, Ana; Muriello, Michael; Barshop, Bruce A; Kimonis, Virginia; Vujkovac, Bojan; Nowak, Albina; Geberhiwot, Tarekegn; Kantola, Ilkka; Knoll, Jasmine; Waldek, Stephen; Nedd, Khan; Karaa, Amel; et al (2023). Head-to-head trial of pegunigalsidase alfa versus agalsidase beta in patients with Fabry disease and deteriorating renal function: results from the 2-year randomised phase III BALANCE study. Journal of Medical Genetics:x-x.

Vokinger, Kerstin N; Glaus, Camille E G; Kesselheim, Aaron S (2023). Approval and therapeutic value of gene therapies in the US and Europe. Gene Therapy, 30(10-11):756-760.

Stolwijk, N N; Bosch, A M; Bouwhuis, N; Häberle, Johannes; van Karnebeek, C; van Spronsen, F J; Langeveld, M; Hollak, C E M (2023). Food or medicine? A European regulatory perspective on nutritional therapy products to treat inborn errors of metabolism. Journal of Inherited Metabolic Disease, 46(6):1017-1028.

Buxboim, Amnon; Kronenberg-Tenga, Rafael; Salajkova, Sarka; Avidan, Nili; Shahak, Hen; Thurston, Alice; Medalia, Ohad (2023). Scaffold, mechanics and functions of nuclear lamins. FEBS letters, 597(22):2791-2805.

Winter, Yaroslav; Hilz, Max; Beuschlein, Felix; Tsukimura, Takahiro; Seifritz, Erich; Lenders, Malte; Brand, Eva; Hennermann, Julia B; Nowak, Albina (2023). Screening for health-related quality of life and its determinants in Fabry disease: A cross-sectional multicenter study. Molecular Genetics and Metabolism, 140(3):107692.

Cuénod, Aline; Agnetti, Jessica; Seth-Smith, Helena M B; Roloff, Tim; Wälchli, Denise; Shcherbakov, Dimitri; Akbergenov, Rashid; Tschudin-Sutter, Sarah; Bassetti, Stefano; Siegemund, Martin; Nickel, Christian H; Moran-Gilad, Jacob; Keys, Timothy G; Pflüger, Valentin; Thomson, Nicholas R; Egli, Adrian (2023). Bacterial genome-wide association study substantiates papGII of Escherichia coli as a major risk factor for urosepsis. Genome Medicine, 15(1):89.

Epp, Robert; Glück, Chaim; Binder, Nadine Felizitas; El Amki, Mohamad; Weber, Bruno; Wegener, Susanne; Jenny, Patrick; Schmid, Franca (2023). The role of leptomeningeal collaterals in redistributing blood flow during stroke. PLoS Computational Biology, 19(10):e1011496.

Kelbert, Lucien; Stevens, Marc J A; Horlbog, Jule Anna; Biggel, Michael; Stephan, Roger (2023). Completely assembled genome sequence of the florfenicol-resistant $Enterococcus faecalis$ strain 90_2023 isolated from a raw sausage imported from Italy to Switzerland. Microbiology Resource Announcements, 12(10):e0061023.

Hofer, Cyrill; Lingenhag, Seraina; Serra Moncadas, Lucas; Rain-Franco, Angel; Andrei, Adrian-Stefan (2023). Q20+ Nanopore sequencing data recover a high-quality Asticcacaulis sp. genome. Microbiology Resource Announcements, 12(10):online.

Sajibu, Sija; Sonder, Emanuel; Tiwari, Amit; Orjuela, Stephany; Parker, Hannah R; Frans, Olivier The; Gubler, Christoph; Marra, Giancarlo; Robinson, Mark D (2023). Validation of hypermethylated DNA regions found in colorectal cancers as potential aging-independent biomarkers of precancerous colorectal lesions. BMC Cancer, 23(1):998.

Guo, Longcheng; Wambui, Joseph; Wang, Chenhui; Muchaamba, Francis; Fernandez-Cantos, Maria Victoria; Broos, Jaap; Tasara, Taurai; Kuipers, Oscar P; Stephan, Roger (2023). Cesin, a short natural variant of nisin, displays potent antimicrobial activity against major pathogens despite lacking two C-terminal macrocycles. Microbiology Spectrum, 11(5):e0531922.

Scheier, T C; Franz, J; Boumasmoud, M; Andreoni, F; Chakrakodi, B; Duvnjak, B; Egli, A; Zingg, W; Ramette, A; Wolfensberger, A; Kouyos, R D; Brugger, S D (2023). Fourier-transform infrared spectroscopy for typing of vancomycin-resistant Enterococcus faecium: performance analysis and outbreak investigation. Microbiology Spectrum, 11(5):e0098423.

Li, Cheng; Czyz, Ewa A; Halitschke, Rayko; Baldwin, Ian T; Schaepman, Michael E; Schuman, Meredith Christine (2023). Evaluating potential of leaf reflectance spectra to monitor plant genetic variation. Plant Methods, 19(1):108.

Laetsch, Dominik R; Bisschop, Gertjan; Martin, Simon H; Aeschbacher, Simon; Setter, Derek; Lohse, Konrad (2023). Demographically explicit scans for barriers to gene flow using gIMble. PLoS Genetics, 19(10):e1010999.

Hartmann, K Patricia; van Gogh, Merel; Freitag, Patrick C; Kast, Florian; Nagy-Davidescu, Gabriela; Borsig, Lubor; Plückthun, Andreas (2023). FAP-retargeted Ad5 enables in vivo gene delivery to stromal cells in the tumor microenvironment. Molecular Therapy, 31(10):2914-2928.

Jerjen, C P; Kumaran, S J; Liesegang, Annette; Hall, E; Wichert, Brigitta; Haase, B (2023). Melanocortin-4 receptor and proopiomelanocortin: Candidate genes for obesity in domestic shorthair cats. Animal Genetics, 54(5):637-642.

Kiener, Sarah; Troyer, Heather; Ruvolo, Daniel; Grest, Paula; Soto, Sara; Letko, Anna; Jagannathan, Vidhya; Leeb, Tosso; Mauldin, Elizabeth A; Yang, Ching; Rostaher, Ana (2023). Independent COL17A1 Variants in Cats with Junctional Epidermolysis Bullosa. Genes, 14(10):1835.

Eichenauer, Heike; Ehlert, Ulrike (2023). The association between prenatal famine, DNA methylation and mental disorders: a systematic review and meta-analysis. Clinical Epigenetics, 15(1):152.

Speicher, Philip; Fankhauser, Christian D; Lorch, Anja; Ardizzone, Davide; Helnwein, Simon; Hoch, Dennis; Hermanns, Thomas; Beyer, Jörg; Akhoundova, Dilara (2023). Excellent survival in relapsed stage I testicular cancer. BMC Cancer, 23(1):870.

Wang, Ke; Prüfer, Kay; Krause-Kyora, Ben; Childebayeva, Ainash; Schuenemann, Verena J; Coia, Valentina; Maixner, Frank; Zink, Albert; Schiffels, Stephan; Krause, Johannes (2023). High-coverage genome of the Tyrolean Iceman reveals unusually high Anatolian farmer ancestry. Cell Genomics, 3(9):100377.

Bonini, Chiara; Chapuis, Aude G; Hudecek, Michael; Guedan, Sonia; Magnani, Chiara; Qasim, Waseem (2023). Genome Editing in Engineered T Cells for Cancer Immunotherapy. Human Gene Therapy, 34(17-18):853-869.

Kido, Jun; Haberle, Johannes; Tanaka, Toju; Nagao, Masayoshi; Wada, Yoichi; Numakura, Chikahiko; Bo, Ryosuke; Nyuzuki, Hiromi; Dateki, Sumito; Maruyama, Shinsuke; Murayama, Kei; Yoshida, Shinichiro; Nakamura, Kimitoshi (2023). Improved sensitivity and specificity for citrin deficiency using selected amino acids and acylcarnitines in the newborn screening. Journal of Inherited Metabolic Disease:Epub ahead of print.

Rastokina, Anastasia; Cebrián, Jorge; Mozafari, Negin; Mandel, Nicholas H; Smith, C I Edvard; Lopes, Massimo; Zain, Rula; Mirkin, Sergei M (2023). Large-scale expansions of Friedreich's ataxia GAA•TTC repeats in an experimental human system: role of DNA replication and prevention by LNA-DNA oligonucleotides and PNA oligomers. Nucleic Acids Research, 51(16):8532-8549.

Helmer, Stefanie M; Rogge, Alizé A; King, Ryan; Canella, Claudia; Pach, Daniel; Witt, Claudia M (2023). Effects of blended learning training for oncology physicians to advise their patients about complementary and integrative therapies: results from the multicenter cluster-randomized KOKON-KTO trial. BMC Cancer, 23(1):836.

Berková, Linda; Fazilaty, Hassan; Yang, Qiutan; Kubovčiak, Jan; Stastna, Monika; Hrckulak, Dusan; Vojtechova, Martina; Dalessi, Tosca; Brügger, Michael David; Hausmann, George; Liberali, Prisca; Korinek, Vladimir; Basler, Konrad; Valenta, Tomas (2023). Terminal differentiation of villus tip enterocytes is governed by distinct Tgfβ superfamily members. EMBO Reports, 24(9):e56454.

League Against Epilepsy Consortium on Complex Epilepsies; et al; Weller, Michael (2023). GWAS meta-analysis of over 29,000 people with epilepsy identifies 26 risk loci and subtype-specific genetic architecture. Nature Genetics, 55(9):1471-1482.

Couton, Marjorie; Viard, Frédérique; Altermatt, Florian (2023). Opportunities and inherent limits of using environmental DNA for population genetics. Environmental DNA, 5(5):1048-1064.

Greco, Benedetta; Caviglia, Stefania; Martinelli, Diego; Capitello, Teresa Grimaldi; Liccardo, Daniela; De Nictolis, Francesca; Pietrobattista, Andrea; Huemer, Martina; Piga, Simone; Olivieri, Giorgia; Spagnoletti, Gionata; Spada, Marco; Dionisi‐Vici, Carlo (2023). The impact of liver transplantation on health‐related quality of life in (acute) intoxication‐type inborn errors of metabolism. Journal of Inherited Metabolic Disease, 46(5):906-915.

Spiekerkoetter, Ute; Bick, David; Scott, Richard; Hopkins, Henrietta; Krones, Tanja; Gross, Edith Sky; Bonham, James R (2023). Genomic newborn screening: Are we entering a new era of screening? Journal of Inherited Metabolic Disease, 46(5):778-795.

Wong, Kim; Abascal, Federico; Ludwig, Latasha; Aupperle-Lellbach, Heike; Grassinger, Julia; Wright, Colin W; Allison, Simon J; Pinder, Emma; Phillips, Roger M; Romero, Laura P; Gal, Arnon; Roady, Patrick J; Pires, Isabel; Guscetti, Franco; Munday, John S; Peleteiro, Maria C; Pinto, Carlos A; Carvalho, Tânia; Cota, João; Du Plessis, Elizabeth C; Constantino-Casas, Fernando; Plog, Stephanie; Moe, Lars; de Brot, Simone; Bemelmans, Ingrid; Amorim, Renée Laufer; Georgy, Smitha R; Prada, Justina; del Pozo, Jorge; Heimann, Marianne; et al (2023). Cross-species oncogenomics offers insight into human muscle-invasive bladder cancer. Genome Biology, 24(1):191.

Bonner, Erin R; Dawood, Adam; Gordish-Dressman, Heather; Eze, Augustine; Bhattacharya, Surajit; Yadavilli, Sridevi; Mueller, Sabine; Waszak, Sebastian M; Nazarian, Javad (2023). Pan-cancer atlas of somatic core and linker histone mutations. n p j Genomic Medicine, 8(1):23.

Kaur, Jaspreet; Chandrashekar, Darshan S; Varga, Zsuzsanna; Sobottka, Bettina; Janssen, Emiel; Gandhi, Khanjan; Kowalski, Jeanne; Kiraz, Umay; Varambally, Sooryanarayana; Aneja, Ritu (2023). Whole-Exome Sequencing Reveals High Mutational Concordance between Primary and Matched Recurrent Triple-Negative Breast Cancers. Genes, 14(9):1690.

Gontier, Camille; Surace, Simone Carlo; Delvendahl, Igor; Müller, Martin; Pfister, Jean-Pascal (2023). Efficient sampling-based Bayesian Active Learning for synaptic characterization. PLoS Computational Biology, 19(8):e1011342.

Brunetti, Barbara; Bacci, Barbara; Abbate, Jessica Maria; Tura, Giorgia; Paciello, Orlando; Vaccaro, Emanuela; Prisco, Francesco; Gandini, Gualtiero; Okonji, Samuel; Paola, Andrea di; Letko, Anna; Drögemüller, Cord; Jagannathan, Vidhya; Turba, Maria Elena; Ogundipe, Tolulope Grace; Lorenzini, Luca; Rosati, Marco; Psalla, Dimitra; Leeb, Tosso; Drögemüller, Michaela (2023). SGCD Missense Variant in a Lagotto Romagnolo Dog with Autosomal Recessively Inherited Limb-Girdle Muscular Dystrophy. Genes, 14(8):1641.

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Hotz, Alrun; Kopp, Julia; Bourrat, Emmanuelle; Oji, Vinzenz; Süßmuth, Kira; Komlosi, Katalin; Bouadjar, Bakar; Tantcheva-Poór, Iliana; Hellström Pigg, Maritta; Betz, Regina C; Giehl, Kathrin; Schedel, Fiona; Weibel, Lisa; Schulz, Solveig; Stölzl, Dora V; Tadini, Gianluca; Demiral, Emine; Berggard, Karin; Zimmer, Andreas D; Alter, Svenja; Fischer, Judith (2023). Mutational Spectrum of the ABCA12 Gene and Genotype-Phenotype Correlation in a Cohort of 64 Patients with Autosomal Recessive Congenital Ichthyosis. Genes, 14(3):717.

Vormittag, Simone; Hüsler, Dario; Haneburger, Ina; Kroniger, Tobias; Anand, Aby; Prantl, Manuel; Barisch, Caroline; Maaß, Sandra; Becher, Dörte; Letourneur, François; Hilbi, Hubert (2023). Legionella- and host-driven lipid flux at LCV-ER membrane contact sites promotes vacuole remodeling. EMBO Reports, 24(3):e56007.

Johannessen, Helen; Hanson, Erin; Gill, Peter; Haas, Cordula; Bergseth, Erik Francisco; Ballantyne, Jack; Fonneløp, Ane Elida (2023). Body Fluid Identification in Samples Collected after Intimate and Social Contact: A Comparison of Two mRNA Profiling Methods and the Additional Information Gained by cSNP Genotypes. Genes, 14(3):636.

Lee, Olivia W; Rodrigues, Calvin; Lin, Shu-Hong; Luo, Wen; Jones, Kristine; Brown, Derek W; Zhou, Weiyin; Karlins, Eric; Khan, Sairah M; Baulande, Sylvain; Raynal, Virginie; Surdez, Didier; Reynaud, Stephanie; Rubio, Rebeca Alba; Zaidi, Sakina; Grossetête, Sandrine; Ballet, Stelly; Lapouble, Eve; Laurence, Valérie; Pierron, Gaelle; Gaspar, Nathalie; Corradini, Nadège; Marec-Bérard, Perrine; Rothman, Nathaniel; Dagnall, Casey L; Burdett, Laurie; Manning, Michelle; Wyatt, Kathleen; Yeager, Meredith; Chari, Raj; et al (2023). Targeted long-read sequencing of the Ewing sarcoma 6p25.1 susceptibility locus identifies germline-somatic interactions with EWSR1-FLI1 binding. American Journal of Human Genetics, 110(3):427-441.

Blackman, Rosetta C; Walser, Jean‐Claude; Rüber, Lukas; Brantschen, Jeanine; Villalba, Soraya; Brodersen, Jakob; Seehausen, Ole; Altermatt, Florian (2023). General principles for assignments of communities from <scp>eDNA</scp> : Open versus closed taxonomic databases. Environmental DNA, 5(2):326-342.

Mütze, Ulrike; Gleich, Florian; Barić, Ivo; Baumgartner, Mathias; et al; Gautschi, Matthias; Häberle, Johannes (2023). Impact of the SARS‐CoV ‐2 pandemic on the health of individuals with intoxication‐type metabolic diseases—Data from the E‐IMD consortium. Journal of Inherited Metabolic Disease, 46(2):220-231.

Schellhorn, Sebastian; Brücher, Dominik; Wolff, Natascha A; Schröer, Katrin; Sallard, Erwan; Mese, Kemal; Zhang, Wenli; Ehrke-Schulz, Eric; Thévenod, Frank; Plückthun, Andreas; Ehrhardt, Anja (2023). Targeting Oncolytic Adenoviruses to Cancer Cells Using a Designed Ankyrin Repeat Protein Lipocalin-2 Fusion Protein. Human Gene Therapy, 34(5-6):203-216.

Macnair, Will; Robinson, Mark (2023). SampleQC: robust multivariate, multi-cell type, multi-sample quality control for single-cell data. Genome Biology, 24(1):23.

Stefanini, Camilla; Csilléry, Katalin; Ulaszewski, Bartosz; Burczyk, Jarosław; Schaepman, Michael E; Schuman, Meredith Christine (2023). A novel synthesis of two decades of microsatellite studies on European beech reveals decreasing genetic diversity from glacial refugia. Tree Genetics & Genomes, 19(1):3.

Barbon, Carlotta; Grünherz, Lisanne; Schweizer, Riccardo; Lindenblatt, Nicole; Giovanoli, Pietro (2023). Botulinum toxin to improve facial expression in a patient with Urofacial (Ochoa) Syndrome. American Journal of Medical Genetics. Part A, 191(2):559-563.

Keck, François; Altermatt, Florian (2023). Management of DNA reference libraries for barcoding and metabarcoding studies with the R package refdb. Molecular Ecology Resources, 23(2):511-518.

Ghielmetti, Giovanni; Seth-Smith, Helena M B; Roloff, Tim; Cernela, Nicole; Biggel, Michael; Stephan, Roger; Egli, Adrian (2023). Whole-genome-based characterization of Campylobacter jejuni from human patients with gastroenteritis collected over an 18 year period reveals increasing prevalence of antimicrobial resistance. Microbial Genomics, 9(2):mgen000941.

Laganenka, Leanid; Lee, Jae-Woo; Malfertheiner, Lukas; Dieterich, Cora Lisbeth; Fuchs, Lea; Piel, Jörn; von Mering, Christian; Sourjik, Victor; Hardt, Wolf-Dietrich (2023). Chemotaxis and autoinducer-2 signalling mediate colonization and contribute to co-existence of Escherichia coli strains in the murine gut. Nature Microbiology, 8(2):204-217.

Peters, Katharina J; Gerber, Livia; Scheu, Luca; Cicciarella, Riccardo; Zoller, Joseph A; Fei, Zhe; Horvath, Steve; Allen, Simon J; King, Stephanie L; Connor, Richard C; Rollins, Lee Ann; Krützen, Michael (2023). An epigenetic DNA methylation clock for age estimates in Indo-Pacific bottlenose dolphins (Tursiops aduncus). Evolutionary Applications, 16(1):126-133.

Mora-Carrera, Emiliano; Stubbs, Rebecca L; Keller, Barbara; Léveillé‐Bourret, Étienne; de Vos, Jurriaan M; Szövényi, Péter; Conti, Elena (2023). Different molecular changes underlie the same phenotypic transition: Origins and consequences of independent shifts to homostyly within species. Molecular Ecology, 32(1):61-78.

Crowther, Lisa M; Poms, Martin; Zandl‐Lang, Martina; Abela, Lucia; Hartmann, Hans; Seiler, Michelle; Mathis, Déborah; Plecko, Barbara (2023). Metabolomics analysis of antiquitin deficiency in cultured human cells and plasma: Relevance to pyridoxine-dependent epilepsy. Journal of Inherited Metabolic Disease, 46(1):129-142.

Buch, Thorsten; Jerchow, Boris; Zevnik, Branko (2023). Practical Application of the 3Rs in Rodent Transgenesis. Methods in Molecular Biology, 2631:33-51.

Wang, Chunyang; Wojtynek, Matthias; Medalia, Ohad (2023). Structural investigation of eukaryotic cells: From the periphery to the interior by cryo-electron tomography. Advances in Biological Regulation, 87:100923.

Fiaschetti, G; Castelletti, D; Zoller, S; Schramm, A; Schroeder, C; Nagaishi, M; Stearns, D; Mittelbronn, M; Eggert, A; Westermann, F; Ohgaki, H; Shalaby, T; Pruschy, M; Arcaro, A; Grotzer, M A (2023). Correction: Bone morphogenetic protein-7 is a MYC target with prosurvival functions in childhood medulloblastoma. Oncogene, 42(2):168.

Peters, Tessa M A; Merx, Jona; Kooijman, Pieter C; Noga, Marek; de Boer, Siebolt; van Gemert, Loes A; Salden, Guido; Engelke, Udo F H; Lefeber, Dirk J; van Outersterp, Rianne E; Berden, Giel; Boltje, Thomas J; Artuch, Rafael; Pías-Peleteiro, Leticia; García-Cazorla, Ángeles; Barić, Ivo; Thöny, Beat; Oomens, Jos; Martens, Jonathan; Wevers, Ron A; Verbeek, Marcel M; Coene, Karlien L M; Willemsen, Michèl A A P (2023). Novel cerebrospinal fluid biomarkers of glucose transporter type 1 deficiency syndrome: Implications beyond the brain's energy deficit. Journal of Inherited Metabolic Disease, 46(1):66-75.

Weiler, Philipp; Van den Berge, Koen; Street, Kelly; Tiberi, Simone (2023). A Guide to Trajectory Inference and RNA Velocity. Methods in Molecular Biology, 2584:269-292.

Schweizer, Tiziano A; Hertegonne, Sanne; Vulin, Clément; Zinkernagel, Annelies S; Mairpady Shambat, Srikanth (2023). Antibacterial Neutrophil Effector Response: Ex Vivo Quantification of Regulated Cell Death Associated with Extracellular Trap Release. In: Nordenfelt, Pontus; Collin, Mattias. Bacterial Pathogenesis : Methods and Protocols. New York: Springer, 235-250.

Karakulak, Tülay; Szklarczyk, Damian; Saylan, Cemil Can; Moch, Holger; von Mering, Christian; Kahraman, Abdullah (2023). CanIsoNet: a database to study the functional impact of isoform switching events in diseases. Bioinformatics advances, 3(1):vbad050.

Huang, Qingyao; Baudis, Michael (2023). Candidate targets of copy number deletion events across 17 cancer types. Frontiers in Genetics, 13:1017657.

Welin, Amanda; Hüsler, Dario; Hilbi, Hubert (2023). Imaging Flow Cytometry of Legionella-Containing Vacuoles in Intact and Homogenized Wild-Type and Mutant Dictyostelium. In: Barteneva, Natasha; Vorobjev, Ivan. Spectral and Imaging Cytometry : Methods and Protocols. New York: Springer, 63-85.

2022

Callegari, Alessia; Quandt, Daniel; Nordmeyer, Johannes; Schubert, Stephan; Kramer, Peter; Knirsch, Walter; Kretschmar, Oliver (2022). Transcatheter Closure of Atrial Septal Defect with Carag Bioresorbable Septal Occluder™: First-in-Child Experience with 12-MonthFollow-Up. Journal of Interventional Cardiology, 2022:3476398.

Horvath, Gabriella A; Blau, Nenad; Ferreira, Carlos R (2022). Clinical and biochemical footprints of inherited metabolic disease. V. Cerebral palsy phenotypes. Molecular Genetics and Metabolism, 137(4):445-448.

Jönsson, Åsa Lina M; Hernando, Nati; Knöpfel, Thomas; Mogensen, Susie; Bendstrup, Elisabeth; Hilberg, Ole; Christensen, Jane Hvarregaard; Simonsen, Ulf; Wagner, Carsten A (2022). Impaired phosphate transport in SLC34A2 variants in patients with pulmonary alveolar microlithiasis. Human Genomics, 16(1):13.

Sánchez‐Villagra, Marcelo R (2022). In the spotlight—Established researcher. Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution, 338(8):443-444.

Deplazes, Sereina; Schlegel, Andrea; Song, Zhuolun; Allegri, Gabriella; Rimann, Nicole; Scherer, Tanja; Willimann, Melanie; Opitz, Lennart; Cunningham, Sharon C; Alexander, Ian E; Kipar, Anja; Häberle, Johannes; Thöny, Beat; Grisch-Chan, Hiu Man (2022). Intrabiliary infusion of naked DNA vectors targets periportal hepatocytes in mice. Molecular Therapy - Methods & Clinical Development, 27:352-367.

Martin, Louise F; Ackermans, Nicole L; Richter, Henning; Kircher, Patrick R; Hummel, Jürgen; Codron, Daryl; Clauss, Marcus; Hatt, Jean-Michel (2022). Macrowear effects of external quartz abrasives of different size and concentration in rabbits (Oryctolagus cuniculus). Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution, 338(8):586-597.

Himmelreich, Nastassja; Montioli, Riccardo; Garbade, Sven F; Kopesky, Jeffrey; Elsea, Sarah H; Carducci, Carla; Voltattorni, Carla B; Blau, Nenad (2022). Spectrum of DDC variants causing aromatic l-amino acid decarboxylase (AADC) deficiency and pathogenicity interpretation using ACMG-AMP/ACGS recommendations. Molecular Genetics and Metabolism, 137(4):359-381.

Clauss, Marcus; Heck, Laura; Veitschegger, Kristof; Geiger, Madeleine (2022). Teeth out of proportion: Smaller horse and cattle breeds have comparatively larger teeth. Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution, 338(8):561-574.

Arora, Natasha; Matias Rodrigues, Joao Frederico; Swayambhu, Meghna; Witlox, Pim (2022). The Microbiome Forensics Database UZH. Forensic Science International: Genetics Supplement Series, 8:181-184.

Sánchez‐Villagra, Marcelo R (2022). The evolutionary and developmental morphology of domestication in birds and mammals. Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution, 338(8):445-446.

Balcarcel, A M; Geiger, M; Clauss, Marcus; Sánchez‐Villagra, Marcelo R (2022). The mammalian brain under domestication: Discovering patterns after a century of old and new analyses. Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution, 338(8):460-483.

García-Martín, Ana Belén; Roder, Thomas; Schmitt, Sarah; Zeeh, Friederike; Bruggmann, Rémy; Perreten, Vincent (2022). Whole-genome analyses reveal a novel prophage and cgSNPs-derived sublineages of Brachyspira hyodysenteriae ST196. BMC Genomics, 23(1):131.

Chiapperino, Luca; Paneni, Francesco (2022). Why epigenetics is (not) a biosocial science and why that matters. Clinical Epigenetics, 14(1):144.

Cantoni, Nathan; Sommavilla, Roberto; Seitz, Patrick; Kulenkampff, Elisabeth; Kahn, Stefan; Lambert, Jean-François; Schmidt, Adrian; Zenhaeusern, Reinhard; Balabanov, Stefan (2022). A multicenter real-world evidence study in the Swiss treatment landscape of chronic myeloid leukemia. BMC Cancer, 22:1192.

Mosler, Thorsten; Baymaz, H Irem; Gräf, Justus F; Mikicic, Ivan; Blattner, Georges; Bartlett, Edward; Ostermaier, Matthias; Piccinno, Rossana; Yang, Jiwen; Voigt, Andrea; Gatti, Marco; Pellegrino, Stefania; Altmeyer, Matthias; Luck, Katja; Ahel, Ivan; Roukos, Vassilis; Beli, Petra (2022). PARP1 proximity proteomics reveals interaction partners at stressed replication forks. Nucleic Acids Research, 50(20):11600-11618.

Armignacco, Roberta; Reel, Parminder S; Reel, Smarti; et al; Beuschlein, Felix (2022). Whole blood methylome-derived features to discriminate endocrine hypertension. Clinical Epigenetics, 14(1):142.

Robles-Bolivar, Paula; Bächinger, David; Parra-Perez, Alberto M; Román-Naranjo, Pablo; Escalera-Balsera, Alba; Gallego-Martinez, Alvaro; Eckhard, Andreas H; Lopez-Escamez, Jose A (2022). A novel nonsense variant in the CENPP gene segregates in a Swiss family with autosomal dominant low-frequency sensorineural hearing loss. European Journal of Human Genetics, 30(11):1301-1305.

Wagner, Andreas (2022). Adaptive evolvability through direct selection instead of indirect, second‐order selection. Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution, 338(7):395-404.

Bakhos, David; Blasco, Hélène; Galvin, John J; Ferreira, Carlos R; Blau, Nenad (2022). Clinical and biochemical footprints of inherited metabolic diseases. IX. Metabolic ear disease. Molecular Genetics and Metabolism, 137(3):223-229.

Brantschen, Jeanine; Pellissier, Loïc; Walser, Jean‐Claude; Altermatt, Florian (2022). Evaluation of primer pairs for eDNA-based assessment of Ephemeroptera, Plecoptera, and Trichoptera across a biogeographically diverse region. Environmental DNA, 4(6):1356-1368.

Runge, Jan‐Niklas; König, Barbara; Lindholm, Anna K; Bendesky, Andres (2022). Parent‐offspring inference in inbred populations. Molecular Ecology Resources, 22(8):2981-2993.

Russo, Teresa; Piccolo, Vincenzo; Moscarella, Elvira; Tschandl, Philipp; Kittler, Harald; Paoli, John; Lallas, Aimilios; Braun, Ralph P; et al (2022). Indications for Digital Monitoring of Patients With Multiple Nevi: Recommendations from the International Dermoscopy Society. Dermatology Parctical and Conceptual, 12(4):e2022182.

Tran, Tiffaney; Ternov, Niels K; Weber, Jochen; Barata, Catarina; Berry, Elizabeth G; Doan, Hung Q; Marghoob, Ashfaq A; Seiverling, Elizabeth V; Sinclair, Shelly; Stein, Jennifer A; Stoos, Elizabeth R; Tolsgaard, Martin G; Wolfensperger, Maya; Braun, Ralph P; Nelson, Kelly C (2022). Instructional Strategies to Enhance Dermoscopic Image Interpretation Education: a Review of the Literature. Dermatology Parctical and Conceptual, 12(4):e2022189.

Tran, Tiffaney; Ternov, Niels K; Weber, Jochen; Barata, Catarina; Berry, Elizabeth G; Doan, Hung Q; Marghoob, Ashfaq A; Seiverling, Elizabeth V; Sinclair, Shelly; Stein, Jennifer A; Stoos, Elizabeth R; Tolsgaard, Martin G; Wolfensperger, Maya; Braun, Ralph P; Nelson, Kelly C (2022). Theory-Based Approaches to Support Dermoscopic Image Interpretation Education: A Review of the Literature. Dermatology Parctical and Conceptual, 12(4):e2022188.

Biggel, Michael; Horlbog, Jule; Nüesch-Inderbinen, Magdalena; Chattaway, Marie Anne; Stephan, Roger (2022). Epidemiological links and antimicrobial resistance of clinical Salmonella enterica ST198 isolates: a nationwide microbial population genomic study in Switzerland. Microbial Genomics, 8(10):mgen000877.

Alfaro-Alarcón, Alejandro; Hetzel, Udo; Smura, Teemu; Baggio, Francesca; Morales, Juan Alberto; Kipar, Anja; Hepojoki, Jussi (2022). Boid Inclusion Body Disease Is Also a Disease of Wild Boa Constrictors. Microbiology Spectrum, 10(5):e0170522.

Jayakumar, Priyanikha; Figueiredo, Alexandre R T; Kümmerli, Rolf (2022). Evolution of Quorum Sensing in <i>Pseudomonas aeruginosa</i> Can Occur via Loss of Function and Regulon Modulation. mSystems, 7(5):e0035422.

Bulzu, Paul-Adrian; Kavagutti, Vinicius S; Andrei, Adrian-Stefan; Ghai, Rohit (2022). The Evolutionary Kaleidoscope of Rhodopsins. mSystems, 7(5):e0040522.

Thumfart, Kristina M; Lazzeri, Samuel; Manuella, Francesca; Mansuy, Isabelle M (2022). Long-term effects of early postnatal stress on Sertoli cells. Frontiers in Genetics, 13:1024805.

Mauch, Emanuel; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Complete Genome Sequence of an Uncultivated Freshwater Bacteroidota Lineage. Microbiology Resource Announcements, 11(10):e0076622.

Bernet, Julia; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Complete Genome Sequence of an Uncultivated Freshwater Flavobacterium sp. Strain. Microbiology Resource Announcements, 11(10):e0065922.

Ajvazi, Xhesida; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Study of Complete Genome Sequence of Uncultivated Hyphomonadaceae sp. Microbiology Resource Announcements, 11(10):e0076522.

Iyengar, Bharat Ravi; Wagner, Andreas (2022). Bacterial Hsp90 predominantly buffers but does not potentiate the phenotypic effects of deleterious mutations during fluorescent protein evolution. Genetics, 222(4):iyac154.

Wolff, Jonas O; Wierucka, Kaja; Paterno, Gustavo B; Coddington, Jonathan A; Hormiga, Gustavo; Kelly, Michael B J; Herberstein, Marie E; Ramírez, Martín J (2022). Stabilized Morphological Evolution of Spiders Despite Mosaic Changes in Foraging Ecology. Systematic Biology, 71(6):1487-1503.

Andréoletti, Jérémy; Zwaans, Antoine; Warnock, Rachel C M; Aguirre-Fernández, Gabriel; Barido-Sottani, Joëlle; Gupta, Ankit; Stadler, Tanja; Manceau, Marc (2022). The Occurrence Birth-Death Process for combined-evidence analysis in macroevolution and epidemiology. Systematic Biology, 71(6):1440-1452.

Gasser, Benedikt; Flück, Martin; Frey, Walter O; Valdivieso, Paola; Spörri, Jörg (2022). Association of Gene Variants for Mechanical and Metabolic Muscle Quality with Cardiorespiratory and Muscular Variables Related to Performance in Skiing Athletes. Genes, 13(10):1798.

Galle, Eva; Wong, Chee-Wai; Ghosh, Adhideb; Desgeorges, Thibaut; Melrose, Kate; Hinte, Laura C; Castellano-Castillo, Daniel; Engl, Magdalena; de Sousa, Joao Agostinho; Ruiz-Ojeda, Francisco Javier; De Bock, Katrien; Ruiz, Jonatan R; von Meyenn, Ferdinand (2022). H3K18 lactylation marks tissue-specific active enhancers. Genome Biology, 23:207.

Martínez-Pizarro, Ainhoa; Leal, Fátima; Holm, Lise Lolle; Doktor, Thomas K; Petersen, Ulrika S S; Bueno, María; Thöny, Beat; Pérez, Belén; Andresen, Brage S; Desviat, Lourdes R (2022). Antisense Oligonucleotide Rescue of Deep-Intronic Variants Activating Pseudoexons in the 6-Pyruvoyl-Tetrahydropterin Synthase Gene. Nucleic Acid Therapeutics, 32(5):378-390.

Kapral, Thomas H; Farnhammer, Fiona; Zhao, Weihao; Lu, Zhi J; Zagrovic, Bojan (2022). Widespread autogenous mRNA–protein interactions detected by CLIP-seq. Nucleic Acids Research, 50(17):9984-9999.

Purtschert-Montenegro, Gabriela; Cárcamo-Oyarce, Gerardo; Pinto-Carbó, Marta; Agnoli, Kirsty; Bailly, Aurélien; Eberl, Leo (2022). Pseudomonas putida mediates bacterial killing, biofilm invasion and biocontrol with a type IVB secretion system. Nature Microbiology, 7(10):1547-1557.

Büttner, Florian A; Winter, Stefan; Stühler, Viktoria; et al; Moch, Holger (2022). A novel molecular signature identifies mixed subtypes in renal cell carcinoma with poor prognosis and independent response to immunotherapy. Genome Medicine, 14:105.

Cremer, Franziska; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Complete Genome Sequence from an Uncultivated Freshwater Elusimicrobiota Lineage. Microbiology Resource Announcements, 11(9):e0042622.

James, Nicholas L; Bond, Monica L; Ozgul, Arpat; Lee, Derek E (2022). Trophic processes constrain seasonal ungulate distributions at two scales in an East African savanna. Journal of Mammalogy, 103(4):956-969.

Inderbitzin, Anne; Loosli, Tom; Kouyos, Roger D; Metzner, Karin J (2022). Quantification of transgene expression in GSH AAVS1 with a novel CRISPR/Cas9-based approach reveals high transcriptional variation. Molecular Therapy - Methods & Clinical Development, 26:107-118.

Michalek, Svenja; Goj, Thomas; Plazzo, Anna Pia; Marovca, Blerim; Bornhauser, Beat; Brunner, Thomas (2022). LRH-1/NR5A2 interacts with the glucocorticoid receptor to regulate glucocorticoid resistance. EMBO Reports, 23(9):e54195.

Winkler, Lennart; Lindholm, Anna K (2022). A meiotic driver alters sperm form and function in house mice: a possible example of spite. Chromosome Research, 30(2-3):151-164.

Angelini, Corrado; Burlina, Alberto; Blau, Nenad; Ferreira, Carlos R (2022). Clinical and biochemical footprints of inherited metabolic disorders: X. Metabolic myopathies. Molecular Genetics and Metabolism, 137(1-2):213-222.

Zvick, Joel; Tarnowska-Sengül, Monika; Ghosh, Adhideb; Bundschuh, Nicola; Gjonlleshaj, Pjeter; Hinte, Laura C; Trautmann, Christine L; Noé, Falko; Qabrati, Xhem; Domenig, Seraina A; Kim, Inseon; Hennek, Thomas; von Meyenn, Ferdinand; Bar-Nur, Ori (2022). Exclusive generation of rat spermatozoa in sterile mice utilizing blastocyst complementation with pluripotent stem cells. Stem Cell Reports, 17(9):1942-1958.

Shlesinger, Danielle; Hong, Kai-Lin; Shammas, Ghazal; Page, Nicolas; Sandu, Ioana; Agrafiotis, Andreas; Kreiner, Victor; Fonta, Nicolas; Vincenti, Ilena; Wagner, Ingrid; Piccinno, Margot; Mariotte, Alexandre; Klimek, Bogna; Dizerens, Raphael; Manero-Carranza, Marcos; Kuhn, Raphael; Ehling, Roy; Frei, Lester; Khodaverdi, Keywan; Panetti, Camilla; Joller, Nicole; Oxenius, Annette; Merkler, Doron; Reddy, Sai T; Yermanos, Alexander (2022). Single-cell immune repertoire sequencing of B and T cells in murine models of infection and autoimmunity. Genes and immunity:183-195.

Kumar, Vikrant; Pouw, Richard B; Autio, Matias I; Sagmeister, Manfred G; Phua, Zai Yang; Borghini, Lisa; Wright, Victoria J; Hoggart, Clive; Pan, Bangfen; Tan, Antson Kiat Yee; Binder, Alexander; Brouwer, Mieke C; Pinnock, Ellie; De Groot, Ronald; Hazelzet, Jan; Emonts, Marieke; Van Der Flier, Michiel; Reiter, Karl; Nöthen, Markus M; Hoffmann, Per; EUCLIDS consortium; Schlapbach, Luregn J; Bellos, Evangelos; Anderson, Suzanne; Secka, Fatou; Martinón-Torres, Federico; Salas, Antonio; Fink, Colin; Carrol, Enitan D; Pollard, Andrew J; et al (2022). Variation in CFHR3 determines susceptibility to meningococcal disease by controlling factor H concentrations. American Journal of Human Genetics, 109(9):1680-1691.

Lintala, Annika; Szirovicza, Leonora; Kipar, Anja; Hetzel, Udo; Hepojoki, Jussi (2022). Persistent Reptarenavirus and Hartmanivirus Infection in Cultured Boid Cells. Microbiology Spectrum, 10(4):e0158522.

Günther, Sira C; Martínez-Romero, Carles; Sempere Borau, Milagros; Pham, Christine T N; García-Sastre, Adolfo; Stertz, Silke (2022). Proteomic Identification of Potential Target Proteins of Cathepsin W for Its Development as a Drug Target for Influenza. Microbiology Spectrum, 10(4):e0092122.

Kerstjens, Stan; Michel, Gabriela; Douglas, Rodney J (2022). Constructive connectomics: How neuronal axons get from here to there using gene-expression maps derived from their family trees. PLoS Computational Biology, 18(8):e1010382.

Kaczmarczyk, Lech; Schleif, Melvin; Dittrich, Lars; Williams, Rhiannan H; Koderman, Maruša; Bansal, Vikas; Rajput, Ashish; Schulte, Theresa; Jonson, Maria; Krost, Clemens; Testaquadra, Fabio J; Bonn, Stefan; Jackson, Walker S (2022). Distinct translatome changes in specific neural populations precede electroencephalographic changes in prion-infected mice. PLoS Pathogens, 18(8):e1010747.

Wang, Shanzhi; Lee, Kyeryoung; Gray, Stephen; Zhang, Yongwei; Tang, Catherine; Morrish, Rikke B; Tosti, Elena; van Oers, Johanna; Amin, Mohammad Ruhul; Cohen, Paula E; MacCarthy, Thomas; Roa, Sergio; Scharff, Matthew D; Edelmann, Winfried; Chahwan, Richard (2022). Role of EXO1 nuclease activity in genome maintenance, the immune response and tumor suppression in Exo1D173A mice. Nucleic Acids Research, 50(14):8093-8106.

Nadeau, Sarah; Thorball, Christian W; Kouyos, Roger; Günthard, Huldrych F; Böni, Jürg; Yerly, Sabine; Perreau, Matthieu; Klimkait, Thomas; Rauch, Andri; Hirsch, Hans H; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Fellay, Jacques; Mitov, Venelin; Stadler, Tanja; Swiss HIV Cohort Study (SHCS) (2022). A Phylogeny-aware GWAS Framework to Correct for Heritable Pathogen Effects on Infectious Disease Traits. Molecular Biology and Evolution, 39(8):msac163.

Etter, Danai; Büchel, Ramona; Patt, Tabea; Biggel, Michael; Tasara, Taurai; Cernela, Nicole; Stevens, Marc J A; Johler, Sophia (2022). Nitrite stress increases staphylococcal enterotoxin C transcription and triggers the SigB regulon. FEMS Microbiology Letters, 369(1):fnac059.

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Gil Vasquez, Ester; Nasreddin, Nadia; Valbuena, Gabriel N; et al; Koelzer, Viktor H; Leedham, Simon J (2022). Dynamic and adaptive cancer stem cell population admixture in colorectal neoplasia. Cell Stem Cell, 29(8):1213-1228.

Oussalah, Abderrahim; Siblini, Youssef; Hergalant, Sébastien; et al; Froese, D Sean; Baumgartner, Matthias R (2022). Epimutations in both the TESK2 and MMACHC promoters in the Epi-cblC inherited disorder of intracellular metabolism of vitamin B12. Clinical Epigenetics, 14:52.

Oborská-Oplová, Michaela; Fischer, Ute; Altvater, Martin; Panse, Vikram Govind (2022). Eukaryotic Ribosome assembly and Nucleocytoplasmic Transport. In: Walker, John M. Ribosome Biogenesis : Methods and Protocols. New York, NY: Springer, 99-126.

Marconi, Guya Diletta; Diomede, Francesca; Trubiani, Oriana; Porcheri, Cristina; Mitsiadis, Thimios A (2022). Exosomes as Carriers for Notch Molecules. In: Dongyu, Jia. Notch Signaling Research : Methods and Protocols. New York, NY: Springer, 197-208.

Palles, Claire; West, Hannah D; Chew, Edward; et al; Koelzer, Viktor H (2022). Germline MBD4 deficiency causes a multi-tumor predisposition syndrome. American Journal of Human Genetics, 109(5):953-960.

Cervantes-Gracia, Karla; Chahwan, Richard; Husi, Holger (2022). Integrative OMICS Data-Driven Procedure Using a Derivatized Meta-Analysis Approach. Frontiers in Genetics, 13:828786.

Rust, Ruslan; Walker, Tara L (2022). Isolation and Culture of Adult Hippocampal Precursor Cells as Free-Floating Neurospheres. In: Deleyrolle, Loic P. Neural Progenitor Cells : Methods and Protocols. New York, NY: Springer, 33-44.

Zosel, Franziska; Holla, Andrea; Schuler, Benjamin (2022). Labeling of Proteins for Single-Molecule Fluorescence Spectroscopy. In: Munoz, Victor. Protein Folding Methods and Protocols. New York: Springer, 207-233.

Romdhane, Sana; Spor, Aymé; Banerjee, Samiran; Breuil, Marie-Christine; Bru, David; Chabbi, Abad; Hallin, Sara; van der Heijden, Marcel G A; Saghai, Aurélien; Philippot, Laurent (2022). Land-use intensification differentially affects bacterial, fungal and protist communities and decreases microbiome network complexity. Environmental Microbiome, 17:1.

Stoy, Henriette; Lang, Kevin S; Merrikh, Houra; Lopes, Massimo (2022). Locus-Specific Analysis of Replication Dynamics and Detection of DNA-RNA Hybrids by Immuno Electron Microscopy. In: Aguilera, Andrés; Ruzov, Alexey. R-Loops: Methods and Protocols. New York: Springer, 67-89.

Giordano, Deborah; Langini, Cassiano; Caflisch, Amedeo; Marabotti, Anna; Facchiano, Angelo (2022). Molecular dynamics analysis of the structural properties of the transglutaminases of Kutzneria albida and Streptomyces mobaraensis. Computational and Structural Biotechnology Journal, 20:3924-3934.

Rahman, Shamima; Baumgartner, Matthias; Morava, Eva; Patterson, Marc; Peters, Verena; Zschocke, Johannes (2022). Quo vadis now: Beyond genomics to an era of personalised medicine. Journal of Inherited Metabolic Disease, 45(2):129-131.

Hadzic, Mélodie C A S; Sigel, Roland K O; Börner, Richard (2022). Single-Molecule Kinetic Studies of Nucleic Acids by Förster Resonance Energy Transfer. In: Steger, Gerhard; Rosenbach, Hannah; Span, Ingrid. DNAzymes : Methods and Protocols. New York: Springer, 173-190.

2021

De Rossi, Pierre; Lewis, Amanda J; Furrer, Johanna; De Vos, Laura; Demeter, Tomas; Zbinden, Aurélie; Zhong, Weijia; Wiersma, Vera I; Scialo, Carlo; Weber, Julien; Guo, Zhongning; Scaramuzza, Stefano; Di Fabrizio, Marta; Böing, Carolin; Castaño‐Díez, Daniel; Al‐Amoudi, Ashraf; Pérez-Berlanga, Manuela; Lashley, Tammaryn; Stahlberg, Henning; Polymenidou, Magdalini (2021). FTLD‐TDP assemblies seed neoaggregates with subtype‐specific features via a prion‐like cascade. EMBO Reports, 22(12):e53877.

Zhang, Xiang; Schuhmachers, Patrick; Mourão, André; et al; Murer, Anita; Münz, Christian (2021). PLK1-dependent phosphorylation restrains EBNA2 activity and lymphomagenesis in EBV-infected mice. EMBO Reports, 22(12):e53007.

Panagopoulos, Andreas; Altmeyer, Matthias (2021). When the RAP (80) fades out, you can hear BRCA1 RING. EMBO Reports, 22(12):e54116.

Emmenegger, Marc; Kumar, Sreedhar Saseendran; Emmenegger, Vishalini; Malinauskas, Tomas; Buettner, Thomas; Rose, Laura; Schierack, Peter; Sprinzl, Martin F; Sommer, Clemens J; Lackner, Karl J; Aguzzi, Adriano; Roggenbuck, Dirk; Frauenknecht, Katrin B M (2021). Anti-prothrombin autoantibodies enriched after infection with SARS-CoV-2 and influenced by strength of antibody response against SARS-CoV-2 proteins. PLoS Pathogens, 17(12):e1010118.

Bai, Yu; Caussinus, Emmanuel; Leo, Stefano; Bosshardt, Fritz; Myachina, Faina; Rot, Gregor; Robinson, Mark D; Lehner, Christian F (2021). A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells. BMC Genomics, 22:771.

Milosavljevic, Stefan; Kuo, Tony; Decarli, Samuele; Mohn, Lucas; Sese, Jun; Shimizu, Kentaro K; Shimizu-Inatsugi, Rie; Robinson, Mark D (2021). ARPEGGIO: Automated Reproducible Polyploid EpiGenetic GuIdance workflOw. BMC Genomics, 22:547.

Gutzmer, Ralf; Robert, Caroline; Loquai, Carmen; Schadendorf, Dirk; Squittieri, Nicholas; Arntz, Ramon; Martelli, Serena; Dummer, Reinhard (2021). Assessment of various efficacy outcomes using ERIVANCE-like criteria in patients with locally advanced basal cell carcinoma receiving sonidegib: results from a preplanned sensitivity analysis. BMC Cancer, 21:1244.

Hiltpold, Maya; Kadri, Naveen Kumar; Janett, Fredi; Witschi, Ulrich; Schmitz-Hsu, Fritz; Pausch, Hubert (2021). Autosomal recessive loci contribute significantly to quantitative variation of male fertility in a dairy cattle population. BMC Genomics, 22(1):225.

Avilla-Royo, Eva; Gegenschatz-Schmid, Katharina; Grossmann, Jonas; Kockmann, Tobias; Zimmermann, Roland; Snedeker, Jess Gerrit; Ochsenbein-Kölble, Nicole; Ehrbar, Martin (2021). Comprehensive quantitative characterization of the human term amnion proteome. Matrix Biology Plus, 12:100084.

Çilingir, F G; Hansen, Dennis; Ozgul, Arpat; Grossen, Christine (2021). Design of SNP markers for Aldabra giant tortoises using low coverage ddRAD-seq. Conservation Genetics Resources, 13(4):409-412.

Mathis, Déborah; Sass, Jörn Oliver; Graubner, Claudia; Schoster, Angelika (2021). Diagnosis of atypical myopathy based on organic acid and acylcarnitine profiles and evolution of biomarkers in surviving horses. Molecular Genetics and Metabolism Reports, 29:100827.

Alther, Roman; Fronhofer, Emanuel A; Altermatt, Florian (2021). Dispersal behaviour and riverine network connectivity shape the genetic diversity of freshwater amphipod metapopulations. Molecular Ecology, 30(24):6551-6565.

Boehi, Flurina; Manetsch, Patrick; Hottiger, Michael O (2021). Interplay between ADP-ribosyltransferases and essential cell signaling pathways controls cellular responses. Cell Discovery, 7(1):104.

Reyer, Heinz‐Ulrich (2021). Josh Van Buskirk (1959–2021). Evolution, 75(12):3228-3232.

Häberle, Johannes; Moore, Marvin B; Haskins, Nantaporn; Rüfenacht, Véronique; Rokicki, Dariusz; Rubio‐Gozalbo, Estela; Tuchman, Mendel; Longo, Nicola; Yandell, Mark; Andrews, Ashley; AhMew, Nicholas; Caldovic, Ljubica (2021). Noncoding sequence variants define a novel regulatory element in the first intron of the N-acetylglutamate synthase gene. Human Mutation, 42(12):1624-1636.

Bernardo-Faura, Marti; Rinas, Melanie; Wirbel, Jakob; Pertsovskaya, Inna; Pliaka, Vicky; Messinis, Dimitris E; Vila, Gemma; Sakellaropoulos, Theodore; Faigle, Wolfgang; Stridh, Pernilla; Behrens, Janina R; Olsson, Tomas; Martin, Roland; Paul, Friedemann; Alexopoulos, Leonidas G; Villoslada, Pablo; Saez-Rodriguez, Julio (2021). Prediction of combination therapies based on topological modeling of the immune signaling network in multiple sclerosis. Genome Medicine, 13:117.

Schmeing, Stephan; Robinson, Mark D (2021). ReSeq simulates realistic Illumina high-throughput sequencing data. Genome Biology, 22:67.

Piazza, Stefano; Campa, Manuela; Pompili, Valerio; Costa, Lorenza Dalla; Salvagnin, Umberto; Nekrasov, Vladimir; Zipfel, Cyril; Malnoy, Mickael (2021). The Arabidopsis pattern recognition receptor EFR enhances fire blight resistance in apple. Horticulture Research, 8:204.

Lankheet, Imke; Vicente, Mário; Barbieri, Chiara; Schlebusch, Carina (2021). The performance of common SNP arrays in assigning African mitochondrial haplogroups. BMC Genomics, 22:43.

Greber, Urs F (2021). Two years into COVID-19 – Lessons in SARS-CoV-2 and a perspective from papers in FEBS Letters. FEBS letters, 595(23):2847-2853.

Pape, Thorben; Hunkemöller, Anna Maria; Kümpers, Philipp; Haller, Hermann; David, Sascha; Stahl, Klaus (2021). Targeting the "sweet spot" in septic shock - A perspective on the endothelial glycocalyx regulating proteins Heparanase-1 and -2. Matrix Biology Plus, 12:100095.

Peña‐Hernández, Rodrigo; Aprigliano, Rossana; Carina Frommel, Sandra; Pietrzak, Karolina; Steiger, Seraina; Roganowicz, Marcin; Lerra, Luigi; Bizzarro, Juliana; Santoro, Raffaella (2021). BAZ2A‐mediated repression via H3K14ac‐marked enhancers promotes prostate cancer stem cells. EMBO Reports, 22(11):e53014.

Denoth-Lippuner, Annina; Jaeger, Baptiste N; Liang, Tong; Royall, Lars N; Chie, Stefanie E; Buthey, Kilian; Machado, Diana; Korobeynyk, Vladislav I; Kruse, Merit; Munz, Clara M; Gerbaulet, Alexander; Simons, Benjamin D; Jessberger, Sebastian (2021). Visualization of individual cell division history in complex tissues using iCOUNT. Cell Stem Cell, 28(11):2020-2034.e12.

Polanco F., Andrea; Richards, Eilísh; Flück, Benjamin; Valentini, Alice; Altermatt, Florian; Brosse, Sébastien; Walser, Jean‐Claude; Eme, David; Marques, Virginie; Manel, Stéphanie; Albouy, Camille; Dejean, Tony; Pellissier, Loïc (2021). Comparing the performance of 12S mitochondrial primers for fish environmental DNA across ecosystems. Environmental DNA, 3(6):1113-1127.

San Roman, Magdalena; Wagner, Andreas (2021). Diversity begets diversity during community assembly until ecological limits impose a diversity ceiling. Molecular Ecology, 30(22):5874-5887.

Freitag, Johanna R B; Wilkens, Mirja R; Muscher-Banse, A S; Gerstner, Kerstin; Schnepel, N; Torgerson, Paul R; Liesegang, Annette (2021). Effects of diets differing in dietary cation-anion difference and calcium concentration on calcium homeostasis in neutered male sheep. Journal of Dairy Science, 104(11):11537-11552.

Hirota, Shun K; Yasumoto, Akiko A; Nitta, Kozue; Tagane, Misa; Miki, Nozomu; Suyama, Yoshihisa; Yahara, Tetsukazu (2021). Evolutionary history of Hemerocallis in Japan inferred from chloroplast and nuclear phylogenies and levels of interspecific gene flow. Molecular Phylogenetics and Evolution, 164:107264.

Kido, Jun; Matsumoto, Shirou; Häberle, Johannes; Inomata, Yukihiro; Kasahara, Mureo; Sakamoto, Seisuke; Horikawa, Reiko; Tanemura, Akihiro; Okajima, Hideaki; Suzuki, Tatsuya; Nakamura, Kimitoshi (2021). Role of liver transplantation in urea cycle disorders: Report from a nationwide study in Japan. Journal of Inherited Metabolic Disease, 44(6):1311-1322.

Cervantes-Gracia, Karla; Gramalla-Schmitz, Anna; Weischedel, Julian; Chahwan, Richard (2021). APOBECs orchestrate genomic and epigenomic editing across health and disease. Trends in Genetics : Tig, 37(11):1028-1043.

VanSickle, Elizabeth A; Michael, Julianne; Bachmann, André S; Rajasekaran, Surender; Prokop, Jeremy W; Kuzniecky, Ruben; Hofstede, Floris C; Steindl, Katharina; Rauch, Anita; Lipson, Mark H; Bupp, Caleb P (2021). Expanding the phenotype: Four new cases and hope for treatment in Bachmann-Bupp syndrome. American Journal of Medical Genetics. Part A, 185(11):3485-3493.

Zheng, Jia; Guo, Ning; Wagner, Andreas (2021). Mistranslation Reduces Mutation Load in Evolving Proteins through Negative Epistasis with DNA Mutations. Molecular Biology and Evolution, 38(11):4792-4804.

Heinzer, Daniel; Avar, Merve; Pease, Daniel Patrick; Dhingra, Ashutosh; Yin, Jiang-An; Schaper, Elke; Doğançay, Berre; Emmenegger, Marc; Spinelli, Anna; Maggi, Kevin; Chincisan, Andra; Mead, Simon; Hornemann, Simone; Heutink, Peter; Aguzzi, Adriano (2021). Novel regulators of PrPC biosynthesis revealed by genome-wide RNA interference. PLoS Pathogens, 17(10):e1010013.

Balakrishna, Suraj; Salazar-Vizcaya, Luisa; Schmidt, Axel J; Kachalov, Viacheslav; Kusejko, Katharina; Thurnheer, Maria Christine; Roth, Jan A; Nicca, Dunja; Cavassini, Matthias; Battegay, Manuel; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F; Rauch, Andri; Kouyos, Roger D; Swiss HIV Cohort Study (2021). Assessing the drivers of syphilis among men who have sex with men in Switzerland reveals a key impact of screening frequency: A modelling study. PLoS Computational Biology, 17(10):e1009529.

Flores Ramos, Stephany; Brugger, Silvio D; Escapa, Isabel Fernandez; Skeete, Chelsey A; Cotton, Sean L; Eslami, Sara M; Gao, Wei; Bomar, Lindsey; Tran, Tommy H; Jones, Dakota S; Minot, Samuel; Roberts, Richard J; Johnston, Christopher D; Lemon, Katherine P (2021). Genomic Stability and Genetic Defense Systems in Dolosigranulum pigrum, a Candidate Beneficial Bacterium from the Human Microbiome. mSystems, 6(5):e0042521.

Brachet, Morgane A A; Vullioud, Philippe; Ganswindt, Andre; Manser, Marta B; Keller, Matthieu; Clutton-Brock, Tim H (2021). Parity predicts allonursing in a cooperative breeder. Journal of Mammalogy, 102(5):1365-1374.

Tromans-Coia, Callum; Sanchi, Andrea; Moeller, Giuliana K; Timinszky, Gyula; Lopes, Massimo; Ahel, Ivan (2021). TARG1 protects against toxic DNA ADP-ribosylation. Nucleic Acids Research, 49(18):10477-10492.

Börold, Jacob; Eletto, Davide; Busnadiego, Idoia; Mair, Nina K; Moritz, Eva; Schiefer, Samira; Schmidt, Nora; Petric, Philipp P; Wong, W Wei-Lynn; Schwemmle, Martin; Hale, Benjamin G (2021). BRD9 is a druggable component of interferon-stimulated gene expression and antiviral activity. EMBO Reports, 22(10):e52823.

Säle, Verena; Palenzuela, Javier; Azcón-Aguilar, Concepción; Sánchez-Castro, Iván; da Silva, Gladstone Alves; Seitz, Benjamin; Sieverding, Ewald; van der Heijden, Marcel G A; Oehl, Fritz (2021). Ancient lineages of arbuscular mycorrhizal fungi provide little plant benefit. Mycorrhiza, 31(5):559-576.

Birch, Joanne L; Kocyan, Alexander (2021). Biogeography of the monocotyledon astelioid clade (Asparagales): A history of long-distance dispersal and diversification with emerging habitats. Molecular Phylogenetics and Evolution, 163:107203.

Leigh, Deborah M; Lischer, Heidi E L; Guillaume, Frédéric; Grossen, Christine; Günther, Torsten (2021). Disentangling adaptation from drift in bottlenecked and reintroduced populations of Alpine ibex. Molecular Ecology Resources, 21(7):2350-2363.

Figueiredo, Alexandre R T; Wagner, Andreas; Kümmerli, Rolf (2021). Ecology drives the evolution of diverse social strategies in Pseudomonas aeruginosa. Molecular Ecology, 30(20):5214-5228.

Pawlowski, Jan; Apothéloz‐Perret‐Gentil, Laure; Altermatt, Florian (2021). Environmental versus extra‐organismal DNA. Molecular Ecology, 30(19):4606-4607.

Hettmer, Simone; Dachy, Guillaume; Seitz, Guido; Agaimy, Abbas; Duncan, Catriona; Jongmans, Marjolijn; Hirsch, Steffen; Kventsel, Iris; Kordes, Uwe; de Krijger, Ronald R; Metzler, Markus; Michaeli, Orli; Nemes, Karolina; Poluha, Anna; Ripperger, Tim; Russo, Alexandra; Smetsers, Stephanie; Sparber-Sauer, Monika; Stutz, Eveline; Bourdeaut, Franck; Kratz, Christian P; Demoulin, Jean-Baptiste (2021). Genetic testing and surveillance in infantile myofibromatosis: a report from the SIOPE Host Genome Working Group. Familial cancer, 20(4):327-336.

Unglaub, Bianca; Cayuela, Hugo; Schmidt, Benedikt R; Preißler, Kathleen; Glos, Julian; Steinfartz, Sebastian (2021). Context‐dependent dispersal determines relatedness and genetic structure in a patchy amphibian population. Molecular Ecology, 30(20):5009-5028.

García-Martín, Ana B; Schmitt, Sarah; Zeeh, Friederike; Perreten, Vincent (2021). Complete Circular Genome Sequences of Brachyspira hyodysenteriae Isolates of the Four Different Sequence Types Causing Swine Dysentery in Switzerland. Microbiology Resource Announcements, 10(39):e0084721.

Immel, Alexander; Key, Felix M; Szolek, András; et al; Schuenemann, Verena J; Reiter, Ella (2021). Analysis of genomic DNA from medieval plague victims suggests long-term effect of Yersinia pestis on human immunity genes. Molecular Biology and Evolution, 38(10):4059-4076.

Cuénod, Aline; Wüthrich, Daniel; Seth-Smith, Helena M B; Ott, Chantal; Gehringer, Christian; Foucault, Frédéric; Mouchet, Roxanne; Kassim, Ali; Revathi, Gunturu; Vogt, Deborah R; von Felten, Stefanie; Bassetti, Stefano; Tschudin-Sutter, Sarah; Hettich, Timm; Schlotterbeck, Götz; Homberger, Christina; Casanova, Carlo; Moran-Gilad, Jacob; Sagi, Orli; Rodríguez-Sánchez, Belén; Müller, Franco; Aerni, Martina; Gaia, Valeria; van Dessel, Helke; Kampinga, Greetje A; Müller, Claudia; Daubenberger, Claudia; Pflüger, Valentin; Egli, Adrian (2021). Whole-genome sequence-informed MALDI-TOF MS diagnostics reveal importance of Klebsiella oxytoca group in invasive infections: a retrospective clinical study. Genome Medicine, 13:150.

Posada-Céspedes, Susana; Van Zyl, Gert; Montazeri, Hesam; Kuipers, Jack; Rhee, Soo-Yon; Kouyos, Roger; Günthard, Huldrych F; Beerenwinkel, Niko (2021). Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C. PLoS Computational Biology, 17(9):e1008363.

Striednig, Bianca; Lanner, Ulrike; Niggli, Selina; Katic, Ana; Vormittag, Simone; Brülisauer, Sabrina; Hochstrasser, Ramon; Kaech, Andres; Welin, Amanda; Flieger, Antje; Ziegler, Urs; Schmidt, Alexander; Hilbi, Hubert; Personnic, Nicolas (2021). Quorum sensing governs a transmissive Legionella subpopulation at the pathogen vacuole periphery. EMBO Reports, 22(9):e52972.

Kolesnik-Goldmann, Natalia; Bodendoerfer, Elias; Röthlin, Kim; Herren, Sebastian; Imkamp, Frank; Marchesi, Martina; Mancini, Stefano (2021). Rapid Detection of PBP2a in Staphylococci from Shortly Incubated Subcultures of Positive Blood Cultures by an Immunochromatographic Assay. Microbiology Spectrum, 9(1):e0046221.

Ferreira, Carlos R; Martinelli, Diego; Blau, Nenad (2021). Clinical and biochemical footprints of inherited metabolic diseases. VI. Metabolic dermatoses. Molecular Genetics and Metabolism, 134(1-2):87-95.

Bräunlich, Stephanie; Koller, Teresa; Glauser, Gaétan; Krattinger, Simon G; Keller, Beat (2021). Expression of the wheat disease resistance gene Lr34 in transgenic barley leads to accumulation of abscisic acid at the leaf tip. Plant Physiology and Biochemistry, 166:950-957.

Martin, Roland; Sospedra, Mireia; Eiermann, Thomas; Olsson, Tomas (2021). Multiple sclerosis: doubling down on MHC. Trends in Genetics : Tig, 37(9):784-797.

Corrêa, Thiago; Feltes, Bruno César; Schinzel, Albert; Riegel, Mariluce; Riegel, Mariluce (2021). Network-based analysis using chromosomal microdeletion syndromes as a model. American Journal of Medical Genetics. Part C: Seminars in Medical Genetics, 187(3):337-348.

Salzer, Ralf; Clark, Jordan J; Vaysburd, Marina; Chang, Veronica T; Albecka, Anna; Kiss, Leo; Sharma, Parul; Gonzalez Llamazares, Andres; Kipar, Anja; Hiscox, Julian A; Owen, Andrew; Aricescu, A Radu; Stewart, James P; James, Leo C; Löwe, Jan (2021). Single‐dose immunisation with a multimerised SARS‐CoV‐2 receptor binding domain (RBD) induces an enhanced and protective response in mice. FEBS letters, 595(18):2323-2340.

Sato, Takehiro; Adachi, Noboru; Kimura, Ryosuke; Hosomichi, Kazuyoshi; Yoneda, Minoru; Oota, Hiroki; Tajima, Atsushi; Toyoda, Atsushi; Kanzawa-Kiriyama, Hideaki; Matsumae, Hiromi; Koganebuchi, Kae; Shimizu, Kentaro K; Shinoda, Ken-Ichi; Hanihara, Tsunehiko; Weber, Andrzej; Kato, Hirofumi; Ishida, Hajime (2021). Whole Genome Sequencing of a 900-year-old Human Skeleton Supports Two Past Migration Events from the Russian Far East to Northern Japan. Genome Biology and Evolution, 13(9):evab192.

Tran, Christel; Turolla, Licia; Ballhausen, Diana; Buros, Sandrine Cornaz; Teav, Tony; Gallart-Ayala, Hector; Ivanisevic, Julijana; Faouzi, Mohamed; Lefeber, Dirk J; Ivanovski, Ivan; Giangiobbe, Sara; Caraffi, Stefano Giuseppe; Garavelli, Livia; Superti-Furga, Andrea (2021). The fate of orally administered sialic acid: First insights from patients with N-acetylneuraminic acid synthase deficiency and control subjects. Molecular Genetics and Metabolism Reports, 28:100777.

Generali, Melanie; Satheesha, Sampoorna; Bode, Peter K; Wanner, Debora; Schäfer, Beat W; Casanova, Elisa A (2021). High Frequency of Tumor Propagating Cells in Fusion-Positive Rhabdomyosarcoma. Genes, 12(9):17.

Peterhans, Sophie; Stevens, Marc J A; Cernela, Nicole; Sidler, Xaver; Stephan, Roger; Scherrer, Simone (2021). Draft genome sequences of two clinical actinobacillus pleuropneumoniae serotype 19 strains from pigs in Switzerland. Microbiology Resource Announcements, 10(34):e0058821.

Ge, Xiangyu; Frank-Bertoncelj, Mojca; Klein, Kerstin; McGovern, Amanda; Kuret, Tadeja; Houtman, Miranda; Burja, Blaž; Micheroli, Raphael; Shi, Chenfu; Marks, Miriam; Filer, Andrew; Buckley, Christopher D; Orozco, Gisela; Distler, Oliver; Morris, Andrew P; Martin, Paul; Eyre, Stephen; Ospelt, Caroline (2021). Functional genomics atlas of synovial fibroblasts defining rheumatoid arthritis heritability. Genome Biology, 22:247.

Song, Fei; Owczarek-Lipska, Marta; Ahmels, Tim; Book, Marius; Aisenbrey, Sabine; Menghini, Moreno; Barthelmes, Daniel; Schrader, Stefan; Spital, Georg; Neidhardt, John (2021). High-Throughput Sequencing to Identify Mutations Associated with Retinal Dystrophies. Genes, 12(8):1269.

Hepojoki, Jussi; Cabrera, Luz E; Hepojoki, Satu; Bellomo, Carla; Kareinen, Lauri; Andersson, Leif C; Vaheri, Antti; Mäkelä, Satu; Mustonen, Jukka; Vapalahti, Olli; Martinez, Valeria; Strandin, Tomas (2021). Hantavirus infection-induced B cell activation elevates free light chains levels in circulation. PLoS Pathogens, 17(8):e1009843.

Biggel, Michael; Hoehn, Sarah; Schmitt, Kira; Frei, Andrea; Jans, Christoph; Stephan, Roger (2021). Complete Genome Sequence of Escherichia coli Sequence Type 1193 Isolate AVS0096, Recovered from River Water in Switzerland. Microbiology Resource Announcements, 10(31):e0060721.

Dulla, Kalyan; Slijkerman, Ralph; van Diepen, Hester C; Albert, Silvia; Dona, Margo; et al; Zang, Jingjing; Neuhauss, Stephan C F (2021). Antisense oligonucleotide-based treatment of retinitis pigmentosa caused by USH2A exon 13 mutations. Molecular Therapy, 29(8):2441-2455.

Florez-Rueda, Ana Marcela; Fiscalini, Flurin; Roth, Morgane; Grossniklaus, Ueli; Städler, Thomas (2021). Endosperm and Seed Transcriptomes Reveal Possible Roles for Small RNA Pathways in Wild Tomato Hybrid Seed Failure. Genome Biology and Evolution, 13(8):evab107.

Frei, Daniel; Veekman, Elisabeth; Grogg, Daniel; Stoffel-Studer, Ingrid; Morishima, Aki; Shimizu-Inatsugi, Rie; Yates, Steven; Shimizu, Kentaro K; Frey, Jürg E; Studer, Bruno; Copetti, Dario (2021). Ultralong Oxford Nanopore reads enable the development of a reference-grade perennial ryegrass genome assembly. Genome Biology and Evolution, 13(8):evab159.

Patriki, D; Baltensperger, N; Berg, J; Cooper, L T; Kissel, C K; Kottwitz, J; Lovrinovic, M; Manka, R; Scherff, F; Schmied, C; Tanner, F C; Luescher, T F; Heidecker, Bettina (2021). A Prospective Pilot Study to Identify a Myocarditis Cohort who may Safely Resume Sports Activities 3 Months after Diagnosis. Journal of Cardiovascular Translational Research, 14(4):670-673.

De Nardo, Alessio N; Roy, Jeannine; Sbilordo, Sonja H; Lüpold, Stefan (2021). Condition‐dependent interaction between mating success and competitive fertilization success in Drosophila melanogaster. Evolution, 75(8):2014-2026.

Findeisen, Eva; Südekum, Karl‐Heinz; Fritz, Julia; Hummel, Jürgen; Clauss, Marcus (2021). Increasing food intake affects digesta retention, digestibility and gut fill but not chewing efficiency in domestic rabbits (Oryctolagus cuniculus). Journal of Experimental Zoology. Part A, Ecological and Integrative Physiology, 335(7):614-622.

Riar, Amandeep K; Chhuneja, Parveen; Keller, Beat; Singh, Kuldeep (2021). Mechanism of leaf rust resistance in wheat wild relatives, Triticum monococcum L. and T. boeoticum L. Plant Genetic Resources, 19(4):320-327.

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Stritt, Christoph; Thieme, Michael; Roulin, Anne C (2021). Rare transposable elements challenge the prevailing view of transposition dynamics in plants. American Journal of Botany, 108(8):1310-1314.

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Tepekule, Burcu; Hauser, Anthony; Kachalov, Viacheslav N; Andresen, Sara; Scheier, Thomas; Schreiber, Peter W; Günthard, Huldrych F; Kouyos, Roger D (2021). Assessing the potential impact of transmission during prolonged viral shedding on the effect of lockdown relaxation on COVID-19. PLoS Computational Biology, 17:e1008609.

Kachalov, Viacheslav N; Nguyen, Huyen; Balakrishna, Suraj; Salazar-Vizcaya, Luisa; Sommerstein, Rami; Kuster, Stefan P; Hauser, Anthony; Abel Zur Wiesch, Pia; Klein, Eili; Kouyos, Roger D (2021). Identifying the drivers of multidrug-resistant Klebsiella pneumoniae at a European level. PLoS Computational Biology, 17:e1008446.

Tusup, Marina; Cheng, Phil F; Picardi, Ernesto; Raziunaite, Austeja; Dummer, Reinhard; Levesque, Mitchell P; French, Lars E; Guenova, Emmanuella; Kundig, Thomas M; Pascolo, Steve (2021). Evaluation of the Interplay between the ADAR Editome and Immunotherapy in Melanoma. Non-Coding RNA, 7:5.

Mallona, Izaskun; Ilie, Ioana Mariuca; Karemaker, Ino Dominiek; Butz, Stefan; Manzo, Massimiliano; Caflisch, Amedeo; Baubec, Tuncay (2021). Flanking sequence preference modulates de novo DNA methylation in the mouse genome. Nucleic Acids Research, 49(1):145-157.

Hussung, Saskia; Akhoundova, Dilara; Hipp, Julian; Follo, Marie; Klar, Rhena F U; Philipp, Ulrike; Scherer, Florian; von Bubnoff, Nikolas; Duyster, Justus; Boerries, Melanie; Wittel, Uwe; Fritsch, Ralph M (2021). Longitudinal analysis of cell-free mutated KRAS and CA 19-9 predicts survival following curative resection of pancreatic cancer. BMC Cancer, 21:49.

Wang, Yuluan; Soneson, Charlotte; Malinowska, Anna L; Laski, Artur; Ghosh, Souvik; Kanitz, Alexander; Gebert, Luca F R; Robinson, Mark D; Hall, Jonathan (2021). MiR-CLIP reveals iso-miR selective regulation in the miR-124 targetome. Nucleic Acids Research, 49(1):25-37.

Szklarczyk, Damian; Gable, Annika L; Nastou, Katerina C; Lyon, David; Kirsch, Rebecca; Pyysalo, Sampo; Doncheva, Nadezhda T; Legeay, Marc; Fang, Tao; Bork, Peer; Jensen, Lars J; von Mering, Christian (2021). The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets. Nucleic Acids Research, 49(D1):D605-D612.

Kubacki, Jakub; Hardmeier, Isabelle; Qi, Weihong; Flacio, Eleonora; Tonolla, Mauro; Fraefel, Cornel (2021). Complete genome sequence of a Rhabdovirus strain from culex mosquitos collected in Southern Switzerland. Microbiology Resource Announcements, 10(1):e01234-20.

Keles, Esin; Malama, Eleni; Bozukova, Siyka; Siuda, Mathias; Wyck, Sarah; Witschi, Ulrich; Bauersachs, Stefan; Bollwein, Heinrich (2021). The micro-RNA content of unsorted cryopreserved bovine sperm and its relation to the fertility of sperm after sex-sorting. BMC Genomics, 22(1):30.

Haug, Patricia; Koller, Samuel; Maggi, Jordi; Lang, Elena; Feil, Silke; Wlodarczyk, Agnès; Bähr, Luzy; Steindl, Katharina; Rohrbach, Marianne; Gerth-Kahlert, Christina; Berger, Wolfgang (2021). Whole Exome Sequencing in Coloboma/Microphthalmia: Identification of Novel and Recurrent Variants in Seven Genes. Genes, 12(1):E65.

Ferreira, Carlos R; Rahman, Shamima; Keller, Markus; Zschocke, Johannes; et al; Baumgartner, Matthias R (2021). An International Classification of Inherited Metabolic Disorders (ICIMD). Journal of Inherited Metabolic Disease, 44:164-177.

Sticco, Matthew J; Peña Palomino, Perla A; Lukacsovich, David; Thompson, Brianna L; Földy, Csaba; Ressl, Susanne; Martinelli, David C (2021). C1QL3 promotes cell‐cell adhesion by mediating complex formation between ADGRB3/BAI3 and neuronal pentraxins. FASEB Journal, 35(1):e21194.

Brown, Steven A; Sinues, Pablo (2021). Circadian Metabolomics from Breath. In: Brown, Steven A. Circadian Clocks : Methods and Protocols. New York: Springer, 149-156.

Zabulica, Mihaela; Srinivasan, Raghuraman C; Akcakaya, Pinar; Allegri, Gabriella; Bestas, Burcu; Firth, Mike; Hammarstedt, Christina; Jakobsson, Tomas; Jakobsson, Towe; Ellis, Ewa; Jorns, Carl; Makris, Georgios; Scherer, Tanja; Rimann, Nicole; van Zuydam, Natalie R; Gramignoli, Roberto; Forslöw, Anna; Engberg, Susanna; Maresca, Marcello; Rooyackers, Olav; Thöny, Beat; Häberle, Johannes; Rosen, Barry; Strom, Stephen C (2021). Correction of a urea cycle defect after ex vivo gene editing of human hepatocytes. Molecular Therapy, 29(5):1903-1917.

Hörster, Friederike; Tuncel, Ali Tunç; Gleich, Florian; Plessl, Tanja; Froese, Sean D; Garbade, Sven F; Kölker, Stefan; Baumgartner, Matthias R (2021). Delineating the clinical spectrum of isolated methylmalonic acidurias: cblA and mut. Journal of Inherited Metabolic Disease, 44(1):193-214.

Tayyrov, Annageldi; Schnetzler, Michèle; Gillis-Germitsch, Nina; Schnyder, Manuela (2021). Genetic diversity of the cardiopulmonary canid nematode Angiostrongylus vasorum within and between rural and urban fox populations. Infection, Genetics and Evolution, 87:104618.

Carraro, Luca; Stauffer, Julian B; Altermatt, Florian (2021). How to design optimal eDNA sampling strategies for biomonitoring in river networks. Environmental DNA, 3(1):157-172.

Thieme, Michael; Roulin, Anne C (2021). Identification of Active Transposable Elements in Plants: The Mobilome-Seq Approach. In: Cho, Jungnam. Plant Transposable Elements. New York: Springer, 95-102.

Hopp, Ann-Katrin; Hottiger, Michael O (2021). Investigation of Mitochondrial Via Immunofluorescence. In: Weissig, V; Edeas, M. Mitochondiral Medicine. New York: Springer, 165-171.

Du, Ngoc-Hien; Brown, Steven A (2021). Measuring Circadian Rhythms in Human Cells. In: Brown, Steven A. Circadian Clocks : Methods and Protocols. New York: Springer, 53-67.

Dimitrov, Bianca; Molema, Femke; Williams, Monique; Schmiesing, Jessica; Mühlhausen, Chris; Baumgartner, Matthias R; Schumann, Anke; Kölker, Stefan (2021). Organic acidurias: Major gaps, new challenges, and a yet unfulfilled promise. Journal of Inherited Metabolic Disease, 44(1):9-21.

Gysin, Tina; Kowalewski, Mariusz P (2021). The involvement of hypoxia-inducible factor 1α (HIF1α)-stabilising factors in steroidogenic acute regulatory (STAR) protein-dependent steroidogenesis in murine KK1 granulosa cells in vitro. Reproduction, Fertility and Development, 33(18):865-880.

Salzmann, Andrea Patrizia; Bamberg, Malte; Courts, Cornelius; Dorum, Guro; Gosch, Annica; Hadrys, Thorsten; Hadzic, Gavrilo; Neis, Maximilian; Schneider, Peter M; Sijen, Titia; van den Berge, Margreet; Wiegand, Peter; Haas, Cordula (2021). mRNA profiling of mock casework samples: Results of a FoRNAP collaborative exercise. Forensic Science International. Genetics, 50:102409.

Demange, Perline A; Malanchini, Margherita; Mallard, Travis T; Biroli, Pietro; Cox, Simon R; Grotzinger, Andrew D; Tucker-Drob, Elliot M; Abdellaoui, Abdel; Arseneault, Louise; van Bergen, Elsje; Boomsma, Dorret I; Caspi, Avshalom; Corcoran, David L; Domingue, Benjamin W; Harris, Kathleen Mullan; Ip, Hill F; Mitchell, Colter; Moffitt, Terrie E; Poulton, Richie; Prinz, Joseph A; Sugden, Karen; Wertz, Jasmin; Williams, Benjamin S; de Zeeuw, Eveline L; Belsky, Daniel W; Harden, K Paige; Nivard, Michel G (2021). Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction. Nature Genetics, 53(1):35-44.

Mun, YeVin; Nombela-Arrieta, César (2021). 3D Microscopy of Murine Bone Marrow Hematopoietic Tissues. Methods in Molecular Biology, 2308:127-138.

Gnoli, Maria; Brizola, Evelise; Tremosini, Morena; Pedrini, Elena; Maioli, Margherita; Mosca, Massimiliano; Bassotti, Alessandra; Castronovo, Paola; Giunta, Cecilia; Sangiorgi, Luca (2021). COL1-Related Disorders: Case Report and Review of Overlapping Syndromes. Frontiers in Genetics, 12:640558.

Pischedda, Sara; O’Connor, Daniel; Fairfax, Benjamin P; Salas, Antonio; Martinon-Torres, Federico; Pollard, Andrew J; Trück, Johannes (2021). Changes in epigenetic profiles throughout early childhood and their relationship to the response to pneumococcal vaccination. Clinical Epigenetics, 13:29.

Mujakić, Izabela; Andrei, Adrian-Stefan; Shabarova, Tanja; Fecskeová, Lívia Kolesár; Salcher, Michaela M; Piwosz, Kasia; Ghai, Rohit; Koblížek, Michal (2021). Common Presence of Phototrophic Gemmatimonadota in Temperate Freshwater Lakes. mSystems, 6(2):01241-20.

Lichtensteiger, Walter; Bassetti-Gaille, Catherine; Rehrauer, Hubert; Georgijevic, Jelena Kühn; Tresguerres, Jesus A F; Schlumpf, Margret (2021). Converging Effects of Three Different Endocrine Disrupters on Sox and Pou Gene Expression in Developing Rat Hippocampus: Possible Role of microRNA in Sex Differences. Frontiers in Genetics, 12:718796.

Stritt, Christoph; Roulin, Anne C (2021). Detecting Signatures of TE Polymorphisms in Short-Read Sequencing Data. In: Cho, Jungnam. Plant transposable elements. New York: Springer, 177-187.

Vasiljevic, Nina; Lim, Marisa; Humble, Emily; Seah, Adeline; Kratzer, Adelgunde; Morf, Nadja V; Prost, Stefan; Ogden, Rob (2021). Developmental validation of Oxford Nanopore Technology MinION sequence data and the NGSpeciesID bioinformatic pipeline for forensic genetic species identification. Forensic Science International. Genetics, 53:102493.

Cervantes-Gracia, Karla; Chahwan, Richard; Husi, Holger (2021). Integrative Analysis of Incongruous Cancer Genomics and Proteomics Datasets. Methods in Molecular Biology, 2361:291-305.

Schumann, Anke; Belche, Véronique; Schaller, Kristin; Grünert, Sarah C; Kaech, Andres; Baumgartner, Matthias R; Kölker, Stefan; Hannibal, Luciana; Spiekerkoetter, Ute (2021). Mitochondrial damage in renal epithelial cells is potentiated by protein exposure in propionic aciduria. Journal of Inherited Metabolic Disease, 44(6):1330-1342.

Lim, Pei Jin; Marfurt, Severin; Lindert, Uschi; Opitz, Lennart; Ndarugendamwo, Timothée; Srikanthan, Pakeerathan; Poms, Martin; Hersberger, Martin; Langhans, Claus-Dieter; Haas, Dorothea; Rohrbach, Marianne; Giunta, Cecilia (2021). Omics Profiling of S2P Mutant Fibroblasts as a Mean to Unravel the Pathomechanism and Molecular Signatures of X-Linked MBTPS2 Osteogenesis Imperfecta. Frontiers in Genetics, 12:662751.

2020

Amaral, Ana R; Chanfana, Cátia; Smith, Brian D; Mansur, Rubaiyat; Collins, Tim; Baldwin, Robert; Minton, Gianna; Parra, Guido J; Krützen, Michael; Jefferson, Thomas A; Karczmarski, Leszek; Guissamulo, Almeida; Brownell, Robert L; Rosenbaum, Howard C (2020). Genomics of Population Differentiation in Humpback Dolphins, Sousa spp. in the Indo-Pacific Ocean. Journal of Heredity, 111(7):652-660.

Marin-Gonzalez, Alberto; Aicart-Ramos, Clara; Marin-Baquero, Mikel; Martín-González, Alejandro; Suomalainen, Maarit; Kannan, Abhilash; Vilhena, J G; Greber, Urs F; Moreno-Herrero, Fernando; Pérez, Rubén (2020). Double-stranded RNA bending by AU-tract sequences. Nucleic Acids Research, 48(22):12917-12928.

Charmpi, Konstantina; Guo, Tiannan; Zhong, Qing; Wagner, Ulrich; Sun, Rui; Toussaint, Nora C; Fritz, Christine E; Yuan, Chunhui; Chen, Hao; Rupp, Niels J; Christiansen, Ailsa; Rutishauser, Dorothea; Rüschoff, Jan H; Fankhauser, Christian; Saba, Karim; Poyet, Cedric; Hermanns, Thomas; Oehl, Kathrin; Moore, Ariane L; Beisel, Christian; Calzone, Laurence; Martignetti, Loredana; Zhang, Qiushi; Zhu, Yi; Martínez, María Rodríguez; Manica, Matteo; Haffner, Michael C; Aebersold, Ruedi; Wild, Peter J; Beyer, Andreas (2020). Convergent network effects along the axis of gene expression during prostate cancer progression. Genome Biology, 21:302.

O'Reilly, Daniel; Crushell, Ellen; Hughes, Joanne; et al; Rüfenacht, Véronique; Häberle, Johannes (2020). Maple syrup urine disease: Clinical outcomes, metabolic control, and genotypes in a screened population after four decades of newborn bloodspot screening in the Republic of Ireland. Journal of Inherited Metabolic Disease, 44(3):639-655.

Huemer, Markus; Mairpady Shambat, Srikanth; Brugger, Silvio D; Zinkernagel, Annelies S (2020). Antibiotic resistance and persistence—Implications for human health and treatment perspectives. EMBO Reports, 21(12):0.

Tiberi, Simone; Robinson, Mark D (2020). BANDITS: Bayesian differential splicing accounting for sample-to-sample variability and mapping uncertainty. Genome Biology, 21:69.

Kartal, Önder; Schmid, Marc W; Grossniklaus, Ueli (2020). Cell type-specific genome scans of DNA methylation divergence indicate an important role for transposable elements. Genome Biology, 21:172.

Antoine, Daniel James; Williams, Dominic P; Kipar, Anja; Laverty, Hugh; Park, B Kevin (2020). Expression of Concern to: Diet restriction inhibits apoptosis and HMGB1 oxidation and promotes inflammatory cell recruitment during acetaminophen hepatoxicity. Molecular Medicine, 26:13.

Koenen, Erik J M; Kidner, Catherine; de Souza, Élvia R; Simon, Marcelo F; Iganci, João R; Nicholls, James A; Brown, Gillian K; de Queiroz, Luciano P; Luckow, Melissa; Lewis, Gwilym P; Pennington, R Toby; Hughes, Colin E (2020). Hybrid capture of 964 nuclear genes resolves evolutionary relationships in the mimosoid legumes and reveals the polytomous origins of a large pantropical radiation. American Journal of Botany, 107(12):1710-1735.

Fowler, Anna; Galson, Jacob D; Trück, Johannes; Kelly, Dominic F; Lunter, Gerton (2020). Inferring B cell specificity for vaccines using a Bayesian mixture model. BMC Genomics, 21:176.

Martens, Helge; Hennies, Imke; Getwan, Maike; Christians, Anne; Weiss, Anna-Carina; Brand, Frank; Gjerstad, Ann Christin; Christians, Arne; Gucev, Zoran; Geffers, Robert; Seeman, Tomáš; Kispert, Andreas; Tasic, Velibor; Bjerre, Anna; Lienkamp, Soeren Sten; Haffner, Dieter; Weber, Ruthild G (2020). Rare heterozygous GDF6 variants in patients with renal anomalies. European Journal of Human Genetics, 28(12):1681-1693.

Holderegger, Rolf; Schmidt, Benedikt R; Grünig, Christoph; Meier, Robert; Csencsics, Daniela; Gassner, Martin; Rellstab, Christian; Stapfer, André (2020). Ready-to-use workflows for the implementation of genetic tools in conservation management. Conservation Genetics Resources, 12(4):691-700.

Antoine, Daniel James; Williams, Dominic P; Kipar, Anja; Laverty, Hugh; Park, B Kevin (2020). Retraction Note: Diet restriction inhibits apoptosis and HMGB1 oxidation and promotes inflammatory cell recruitment during acetaminophen hepatotoxicity. Molecular Medicine, 26(1):130.

Thomas, Christoph; Aller, Stephen G; Beis, Konstantinos; Carpenter, Elisabeth P; et al; Martinoia, Enrico (2020). Structural and functional diversity calls for a new classification of ABC transporters. FEBS letters, 594(23):3767-3775.

Primo, Pasquale; Meccariello, Angela; Inghilterra, Maria Grazia; Gravina, Andrea; Del Corsano, Giuseppe; Volpe, Gennaro; Sollazzo, Germano; Aceto, Serena; Robinson, Mark D; Salvemini, Marco; Saccone, Giuseppe (2020). Targeting the autosomal Ceratitis capitata transformer gene using Cas9 or dCas9 to masculinize XX individuals without inducing mutations. BMC Genetics, 21(Suppl 2):150.

Feller, Anita; Matthes, Katarina L; Bordoni, Andrea; Bouchardy, Christine; Bulliard, Jean-Luc; Herrmann, Christian; Konzelmann, Isabelle; Maspoli, Manuela; Mousavi, Mohsen; Rohrmann, Sabine; Staehelin, Katharina; Arndt, Volker (2020). The relative risk of second primary cancers in Switzerland: a population-based retrospective cohort study. BMC Cancer, 20:51.

Hecht, Markus; Hahn, Dennis; Wolber, Philipp; Hautmann, Matthias G; Reichert, Dietmar; Weniger, Steffi; Belka, Claus; Bergmann, Tobias; Göhler, Thomas; Welslau, Manfred; Große-Thie, Christina; Guntinas-Lichius, Orlando; von der Grün, Jens; Balermpas, Panagiotis; Orlowski, Katrin; Messinger, Diethelm; Stenzel, Karsten G; Fietkau, Rainer (2020). Treatment response lowers tumor symptom burden in recurrent and/or metastatic head and neck cancer. BMC Cancer, 20(933):1-11.

Lopes, Patricia C; König, Barbara (2020). Wild mice with different social network sizes vary in brain gene expression. BMC Genomics, 21:506.

Germain, Pierre-Luc; Sonrel, Anthony; Robinson, Mark D (2020). pipeComp, a general framework for the evaluation of computational pipelines, reveals performant single cell RNA-seq preprocessing tools. Genome Biology, 21(1):227.

Caduff, Nicole; McHugh, Donal; Murer, Anita; Rämer, Patrick; Raykova, Ana; Landtwing, Vanessa; Rieble, Lisa; Keller, Christian W; Prummer, Michael; Hoffmann, Laurent; Lam, Janice K P; Chiang, Alan K S; Raulf, Friedrich; Azzi, Tarik; Berger, Christoph; Rubic-Schneider, Tina; Traggiai, Elisabetta; Lünemann, Jan D; Kammüller, Michael; Münz, Christian (2020). Correction: Immunosuppressive FK506 treatment leads to more frequent EBV-associated lymphoproliferative disease in humanized mice. PLoS Pathogens, 16(12):e1009167.

Giangiobbe, Sara; Caraffi, Stefano Giuseppe; Ivanovski, Ivan; Maini, Ilenia; Pollazzon, Marzia; et al (2020). Expanding the phenotype of Wiedemann-Steiner syndrome: Craniovertebral junction anomalies. American Journal of Medical Genetics. Part A, 182(12):2877-2886.

Roifman, Maian; Niles, Kirsten M; MacNeil, Lauren; Blaser, Susan; Noor, Abdul; Godoy, Ruth; van Mieghem, Tim; Ryan, Greg; Seaward, Gareth; Sondheimer, Neal; Mercimek-Andrews, Saadet; Schulze, Andreas; Hewson, Stacy; Ovadia, Adi; Chitayat, David; Morgen, Eric K; Hojilla, Carlo; Kolomietz, Elena; Watkins, Nicholas; Häberle, Johannes; Shannon, Patrick (2020). Homozygous GLUL deletion is embryonically viable and leads to glutamine synthetase deficiency. Clinical Genetics, 98(6):613-619.

San Roman, Magdalena; Wagner, Andreas (2020). Acetate and glycerol are not uniquely suited for the evolution of cross-feeding in E. coli. PLoS Computational Biology, 16(11):e1008433.

Bordignon, Enrica; Seeger, Markus A; Galazzo, Laura; Meier, Gianmarco (2020). From in vitro towards in situ: structure-based investigation of ABC exporters by electron paramagnetic resonance spectroscopy. FEBS letters, 594:3839-3856.

Buruck, Gabriele; Pfarr, Anna-Lisa; Penz, Marlene; Wekenborg, Magdalena K; Rothe, Nicole; Walther, Andreas (2020). The Influence of Workload and Work Flexibility on Work-Life Conflict and the Role of Emotional Exhaustion. Behavioral Sciences, 10(11):174.

Wambui, Joseph; Cernela, Nicole; Stevens, Marc J A; Ghielmetti, Giovanni; Stephan, Roger (2020). Draft genome sequences of two clostridium algidicarnis strains isolated from meat juice samples of chilled vacuum-packed lamb meat. Microbiology Resource Announcements, 9(45):e00983-20.

Wyler, Michele; Stritt, Christoph; Walser, Jean-Claude; Baroux, Célia; Roulin, Anne C (2020). Impact of transposable elements on methylation and gene expression across natural accessions of Brachypodium distachyon. Genome Biology and Evolution, 12(11):1994-2001.

Sokolowska, Milena (2020). Outsmarting SARS-CoV-2 by empowering a decoy ACE2. Signal Transduction and Targeted Therapy, 5(1):260.

Gesemann, Matthias; Neuhauss, Stephan C F (2020). Selective Gene Loss of Visual and Olfactory Guanylyl Cyclase Genes Following the Two Rounds of Vertebrate-Specific Whole-Genome Duplications. Genome Biology and Evolution, 12(11):2153-2167.

Rellstab, Christian; Zoller, Stefan; Sailer, Christian; Tedder, Andrew; Gugerli, Felix; Shimizu, Kentaro K; Holderegger, Rolf; Widmer, Alex; Fischer, Martin C (2020). Genomic signatures of convergent adaptation to Alpine environments in three Brassicaceae species. Molecular Ecology, 29(22):4350-4365.

Picart-Picolo, Ariadna; Grob, Stefan; Picault, Nathalie; Franek, Michal; Llauro, Christel; Halter, Thierry; Maier, Tom R; Jobet, Edouard; Descombin, Julie; Zhang, Panpan; Paramasivan, Vijayapalani; Baum, Thomas J; Navarro, Lionel; Dvořáčková, Martina; Mirouze, Marie; Pontvianne, Frédéric (2020). Large tandem duplications affect gene expression, 3D organization, and plant–pathogen response. Genome Research, 30(11):1583-1592.

Epting, Daniel; Senaratne, Lokuliyange D S; Ott, Elisabeth; Holmgren, Asbjørn; Sumathipala, Dulika; et al; Lienkamp, Soeren Sten (2020). Loss of CBY1 results in a ciliopathy characterized by features of Joubert syndrome. Human Mutation, 41(12):2179-2194.

Boccia, Lavinia; Le Foll, Christelle; Lutz, Thomas A (2020). Noradrenaline signaling in the LPBN mediates amylin's and salmon calcitonin's hypophagic effect in male rats. FASEB Journal, 34(11):15448-15461.

Koch, Eva L; Sbilordo, Sonja H; Guillaume, Frédéric (2020). Genetic variance in fitness and its cross-sex covariance predict adaptation during experimental evolution. Evolution, 74(12):2725-2740.

Wyvekens, Nicolas; Valtcheva, Nadejda; Mischo, Axel; Helmchen, Birgit; Hermanns, Thomas; Choschzick, Matthias; Hötker, Andreas M; Rauch, Anita; Mühleisen, Beda; Akhoundova, Dilara; Weber, Achim; Moch, Holger; Rupp, Niels J (2020). Novel morphological and genetic features of fumarate hydratase deficient renal cell carcinoma in HLRCC syndrome patients with a tailored therapeutic approach. Genes, Chromosomes and Cancer, 59(11):611-619.

Schmutzer, Michael; Wagner, Andreas (2020). Gene expression noise can promote the fixation of beneficial mutations in fluctuating environments. PLoS Computational Biology, 16(10):e1007727.

Lewinson, Oded; Orelle, Cédric; Seeger, Markus A (2020). Structures of ABC transporters: handle with care. FEBS letters, 594(23):3799-3814.

Arzate-Mejía, Rodrigo G; Lottenbach, Zuzanna; Schindler, Vincent; Jawaid, Ali; Mansuy, Isabelle M (2020). Long-Term Impact of Social Isolation and Molecular Underpinnings. Frontiers in Genetics, 11:589621.

Wambui, Joseph; Cernela, Nicole; Stevens, Marc J A; Corti, Sabrina; Stephan, Roger (2020). Draft genome sequences of two phylogenetically distinct clostridium gasigenes strains, CM001 and CM004, isolated from chilled vacuum-packed meat. Microbiology Resource Announcements, 9(42):e01128-20.

Sun, Jianqiang; Shimizu-Inatsugi, Rie; Hofhuis, Hugo; Shimizu, Kentaro; Hay, Angela; Shimizu, Kentaro K; Sese, Jun (2020). A Recently Formed Triploid Cardamine insueta Inherits Leaf Vivipary and Submergence Tolerance Traits of Parents. Frontiers in Genetics, 11:567262.

Koch, Eva L; Guillaume, Frederic (2020). Restoring ancestral phenotypes is a general pattern in gene expression evolution during adaptation to new environments in Tribolium castaneum. Molecular Ecology, 29(20):3938-3953.

Kottwitz, Jan; Bruno, Katelyn A; Berg, Jan; Salomon, Gary R; Fairweather, DeLisa; Elhassan, Mawahib; Baltensperger, Nora; Kissel, Christine K; Lovrinovic, Marina; Baltensweiler, Andrea; Schmied, Christian; Templin, Christian; Lima, Joao A C; Landmesser, Ulf; Lüscher, Thomas F; Manka, Robert; Heidecker, Bettina (2020). Myoglobin for Detection of High-Risk Patients with Acute Myocarditis. Journal of Cardiovascular Translational Research, 13(5):853-863.

Henco, Lara; Diaconescu, Andreea O; Lahnakoski, Juha M; Brandi, Marie-Luise; Hörmann, Sophia; Hennings, Johannes; Hasan, Alkomiet; Papazova, Irina; Strube, Wolfgang; Bolis, Dimitris; Schilbach, Leonhard; Mathys, Christoph (2020). Aberrant computational mechanisms of social learning and decision-making in schizophrenia and borderline personality disorder. PLoS Computational Biology, 16(9):e1008162.

Paape, Timothy; Akiyama, Reiko; Cereghetti, Teo; Onda, Yoshihiko; Hirao, Akira S; Kenta, Tanaka; Shimizu, Kentaro K (2020). Experimental and Field Data Support Range Expansion in an Allopolyploid Arabidopsis Owing to Parental Legacy of Heavy Metal Hyperaccumulation. Frontiers in Genetics, 11:1162.

Winkler, Johannes; Lukovic, Dominika; Mester-Tonczar, Julia; Zlabinger, Katrin; Gugerell, Alfred; Pavo, Noemi; Jakab, András; Szankai, Zsuzsanna; Traxler, Denise; Müller, Claudia; Spannbauer, Andreas; Riesenhuber, Martin; Hašimbegović, Ena; Dawkins, James; Zimmermann, Matthias; Ankersmit, Hendrik J; Marbán, Eduardo; Gyöngyösi, Mariann (2020). Quantitative hybrid cardiac [18F] FDG-PET-MRI images for assessment of cardiac repair by preconditioned cardiosphere-derived cells. Molecular Therapy - Methods & Clinical Development, 18:354-366.

Giger, Sonja; Kovtonyuk, Larisa V; Utz, Sebastian G; Ramosaj, Mergim; Kovacs, Werner J; Schmid, Emanuel; Ioannidis, Vassilios; Greter, Melanie; Manz, Markus G; Lutolf, Matthias P; Jessberger, Sebastian; Knobloch, Marlen (2020). A single metabolite which modulates lipid metabolism alters hematopoietic stem/progenitor cell behavior and promotes lymphoid reconstitution. Stem Cell Reports, 15(3):566-576.

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Lang, Brian M; Kuipers, Jack;