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2023

Vieira Lima, Lucas; Salino, Alexandre; Kessler, Michael; Rouhan, Germinal; Testo, Weston L; Suzart Argolo, Caio; Consortium, GoFlag; Elias Almeida, Thaís (2023). Phylogenomic evolutionary insights in the fern family Gleicheniaceae. Molecular Phylogenetics and Evolution, 184:107782.

Wittwer, Samuel; Gerber, Livia; Allen, Simon J; Willems, Erik P; Marfurt, Svenja M; Krützen, Michael (2023). Reconstructing the colonization history of Indo-Pacific bottlenose dolphins (Tursiops aduncus) in Northwestern Australia. Molecular Ecology:Epub ahead of print.

Keck, François; Couton, Marjorie; Altermatt, Florian (2023). Navigating the seven challenges of taxonomic reference databases in metabarcoding analyses. Molecular Ecology Resources, 23(4):742-755.

Waller, Manuel; Frangedakis, Eftychios; Marron, Alan O; Sauret-Gueto, Susanna; Rever, Jenna; Sabbagh, Cyrus Raja Rubenstein; Hibberd, Julian M; Haseloff, Jim; Renzaglia, Karen S; Szövényi, Péter (2023). An optimised transformation protocol for Anthoceros agrestis and three more hornwort species. The Plant Journal, 114(3):699-718.

Mueller, Kim-Kristine; Pfeifer, Lukas; Schuldt, Lina; Szövényi, Péter; de Vries, Sophie; de Vries, Jan; Johnson, Kim L; Classen, Birgit (2023). Fern cell walls and the evolution of arabinogalactan proteins in streptophytes. The Plant Journal, 114(4):875-894.

Boy, Nikolas; Mühlhausen, Chris; Maier, Esther M; Ballhausen, Diana; Baumgartner, Matthias R; Beblo, Skadi; Burgard, Peter; Chapman, Kimberly A; Dobbelaere, Dries; Heringer‐Seifert, Jana; Fleissner, Sandra; Grohmann‐Held, Karina; Hahn, Gabriele; Harting, Inga; Hoffmann, Georg F; Jochum, Frank; Karall, Daniela; Konstantopoulous, Vassiliki; Krawinkel, Michael B; Lindner, Martin; Märtner, E M Charlotte; Nuoffer, Jean‐Marc; Okun, Jürgen G; Plecko, Barbara; Posset, Roland; Sahm, Katja; Scholl‐Bürgi, Sabine; Thimm, Eva; Walter, Magdalena; Williams, Monique; et al (2023). Recommendations for diagnosing and managing individuals with glutaric aciduria type 1: Third revision. Journal of Inherited Metabolic Disease, 46(3):482-519.

McCorvie, Thomas J; Ferreira, Douglas; Yue, Wyatt W; Froese, D Sean (2023). The complex machinery of human cobalamin metabolism. Journal of Inherited Metabolic Disease, 46(3):406-420.

Zanoni, Paolo; Steindl, Katharina; Sticht, Heinrich; Oneda, Beatrice; Joset, Pascal; Ivanovski, Ivan; Horn, Anselm H C; Cabello, Elena María; Laube, Julia; Zweier, Markus; Baumer, Alessandra; Rauch, Anita; Khan, Nadia (2023). The genetic landscape and clinical implication of pediatric Moyamoya angiopathy in an international cohort. European Journal of Human Genetics:Epub ahead of print.

Badertscher, Patrick; du Fay de Lavallaz, Jeanne; Hammerer-Lercher, Angelika; Mueller, Christian; BASEL IX Investigators (2023). Clinical Utility of D-Dimer for Rule-Out or Rule-In of Venous Thromboembolism in Syncope. Journal of Cardiovascular Translational Research, 16(2):427-429.

Johannessen, Helen; Hanson, Erin; Gill, Peter; Haas, Cordula; Bergseth, Erik Francisco; Ballantyne, Jack; Fonneløp, Ane Elida (2023). Body Fluid Identification in Samples Collected after Intimate and Social Contact: A Comparison of Two mRNA Profiling Methods and the Additional Information Gained by cSNP Genotypes. Genes, 14(3):636.

Blackman, Rosetta C; Walser, Jean‐Claude; Rüber, Lukas; Brantschen, Jeanine; Villalba, Soraya; Brodersen, Jakob; Seehausen, Ole; Altermatt, Florian (2023). General principles for assignments of communities from <scp>eDNA</scp> : Open versus closed taxonomic databases. Environmental DNA, 5(2):326-342.

Mütze, Ulrike; Gleich, Florian; Barić, Ivo; Baumgartner, Mathias; et al; Gautschi, Matthias; Häberle, Johannes (2023). Impact of the SARS‐CoV ‐2 pandemic on the health of individuals with intoxication‐type metabolic diseases—Data from the E‐IMD consortium. Journal of Inherited Metabolic Disease, 46(2):220-231.

Stefanini, Camilla; Csilléry, Katalin; Ulaszewski, Bartosz; Burczyk, Jarosław; Schaepman, Michael E; Schuman, Meredith Christine (2023). A novel synthesis of two decades of microsatellite studies on European beech reveals decreasing genetic diversity from glacial refugia. Tree Genetics & Genomes, 19(1):3.

Barbon, Carlotta; Grünherz, Lisanne; Schweizer, Riccardo; Lindenblatt, Nicole; Giovanoli, Pietro (2023). Botulinum toxin to improve facial expression in a patient with Urofacial (Ochoa) Syndrome. American Journal of Medical Genetics. Part A, 191(2):559-563.

Theissinger, Kathrin; Fernandes, Carlos; Formenti, Giulio; Bista, Iliana; Berg, Paul R; Bleidorn, Christoph; Bombarely, Aureliano; Crottini, Angelica; Gallo, Guido R; Godoy, José A; Jentoft, Sissel; Malukiewicz, Joanna; Mouton, Alice; Oomen, Rebekah A; Paez, Sadye; Palsbøll, Per J; Pampoulie, Christophe; Ruiz-López, María J; Secomandi, Simona; Svardal, Hannes; Theofanopoulou, Constantina; de Vries, Jan; Waldvogel, Ann-Marie; Zhang, Guojie; Jarvis, Erich D; Bálint, Miklós; Ciofi, Claudio; Waterhouse, Robert M; Mazzoni, Camila J; Höglund, Jacob; Conti, Elena (2023). How genomics can help biodiversity conservation. Trends in Genetics : Tig:Epub ahead of print.

Keck, François; Altermatt, Florian (2023). Management of DNA reference libraries for barcoding and metabarcoding studies with the R package refdb. Molecular Ecology Resources, 23(2):511-518.

Laganenka, Leanid; Lee, Jae-Woo; Malfertheiner, Lukas; Dieterich, Cora Lisbeth; Fuchs, Lea; Piel, Jörn; von Mering, Christian; Sourjik, Victor; Hardt, Wolf-Dietrich (2023). Chemotaxis and autoinducer-2 signalling mediate colonization and contribute to co-existence of Escherichia coli strains in the murine gut. Nature Microbiology, 8(2):204-217.

Peters, Katharina J; Gerber, Livia; Scheu, Luca; Cicciarella, Riccardo; Zoller, Joseph A; Fei, Zhe; Horvath, Steve; Allen, Simon J; King, Stephanie L; Connor, Richard C; Rollins, Lee Ann; Krützen, Michael (2023). An epigenetic DNA methylation clock for age estimates in Indo-Pacific bottlenose dolphins (Tursiops aduncus). Evolutionary Applications, 16(1):126-133.

Mora-Carrera, Emiliano; Stubbs, Rebecca L; Keller, Barbara; Léveillé‐Bourret, Étienne; de Vos, Jurriaan M; Szövényi, Péter; Conti, Elena (2023). Different molecular changes underlie the same phenotypic transition: Origins and consequences of independent shifts to homostyly within species. Molecular Ecology, 32(1):61-78.

Crowther, Lisa M; Poms, Martin; Zandl‐Lang, Martina; Abela, Lucia; Hartmann, Hans; Seiler, Michelle; Mathis, Déborah; Plecko, Barbara (2023). Metabolomics analysis of antiquitin deficiency in cultured human cells and plasma: Relevance to pyridoxine-dependent epilepsy. Journal of Inherited Metabolic Disease, 46(1):129-142.

Buch, Thorsten; Jerchow, Boris; Zevnik, Branko (2023). Practical Application of the 3Rs in Rodent Transgenesis. Methods in Molecular Biology, 2631:33-51.

Wang, Chunyang; Wojtynek, Matthias; Medalia, Ohad (2023). Structural investigation of eukaryotic cells: From the periphery to the interior by cryo-electron tomography. Advances in Biological Regulation, 87:100923.

Fiaschetti, G; Castelletti, D; Zoller, S; Schramm, A; Schroeder, C; Nagaishi, M; Stearns, D; Mittelbronn, M; Eggert, A; Westermann, F; Ohgaki, H; Shalaby, T; Pruschy, M; Arcaro, A; Grotzer, M A (2023). Correction: Bone morphogenetic protein-7 is a MYC target with prosurvival functions in childhood medulloblastoma. Oncogene, 42(2):168.

Huang, Qingyao; Baudis, Michael (2023). Candidate targets of copy number deletion events across 17 cancer types. Frontiers in Genetics, 13:1017657.

2022

Callegari, Alessia; Quandt, Daniel; Nordmeyer, Johannes; Schubert, Stephan; Kramer, Peter; Knirsch, Walter; Kretschmar, Oliver (2022). Transcatheter Closure of Atrial Septal Defect with Carag Bioresorbable Septal Occluder™: First-in-Child Experience with 12-MonthFollow-Up. Journal of Interventional Cardiology, 2022:3476398.

Vintschger, Ella; Kraemer, Dennis; Joset, Pascal; Horn, Anselm H C; Rauch, Anita; Sticht, Heinrich; Bachmann-Gagescu, Ruxandra (2022). Challenges for the implementation of next generation sequencing-based expanded carrier screening: Lessons learned from the ciliopathies. European Journal of Human Genetics:Epub ahead of print.

Horvath, Gabriella A; Blau, Nenad; Ferreira, Carlos R (2022). Clinical and biochemical footprints of inherited metabolic disease. V. Cerebral palsy phenotypes. Molecular Genetics and Metabolism, 137(4):445-448.

Jönsson, Åsa Lina M; Hernando, Nati; Knöpfel, Thomas; Mogensen, Susie; Bendstrup, Elisabeth; Hilberg, Ole; Christensen, Jane Hvarregaard; Simonsen, Ulf; Wagner, Carsten A (2022). Impaired phosphate transport in SLC34A2 variants in patients with pulmonary alveolar microlithiasis. Human Genomics, 16(1):13.

Sánchez‐Villagra, Marcelo R (2022). In the spotlight—Established researcher. Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution, 338(8):443-444.

Deplazes, Sereina; Schlegel, Andrea; Song, Zhuolun; Allegri, Gabriella; Rimann, Nicole; Scherer, Tanja; Willimann, Melanie; Opitz, Lennart; Cunningham, Sharon C; Alexander, Ian E; Kipar, Anja; Häberle, Johannes; Thöny, Beat; Grisch-Chan, Hiu Man (2022). Intrabiliary infusion of naked DNA vectors targets periportal hepatocytes in mice. Molecular Therapy - Methods & Clinical Development, 27:352-367.

Martin, Louise F; Ackermans, Nicole L; Richter, Henning; Kircher, Patrick R; Hummel, Jürgen; Codron, Daryl; Clauss, Marcus; Hatt, Jean-Michel (2022). Macrowear effects of external quartz abrasives of different size and concentration in rabbits (Oryctolagus cuniculus). Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution, 338(8):586-597.

Himmelreich, Nastassja; Montioli, Riccardo; Garbade, Sven F; Kopesky, Jeffrey; Elsea, Sarah H; Carducci, Carla; Voltattorni, Carla B; Blau, Nenad (2022). Spectrum of DDC variants causing aromatic l-amino acid decarboxylase (AADC) deficiency and pathogenicity interpretation using ACMG-AMP/ACGS recommendations. Molecular Genetics and Metabolism, 137(4):359-381.

Clauss, Marcus; Heck, Laura; Veitschegger, Kristof; Geiger, Madeleine (2022). Teeth out of proportion: Smaller horse and cattle breeds have comparatively larger teeth. Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution, 338(8):561-574.

Arora, Natasha; Matias Rodrigues, Joao Frederico; Swayambhu, Meghna; Witlox, Pim (2022). The Microbiome Forensics Database UZH. Forensic Science International: Genetics Supplement Series, 8:181-184.

Sánchez‐Villagra, Marcelo R (2022). The evolutionary and developmental morphology of domestication in birds and mammals. Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution, 338(8):445-446.

Balcarcel, A M; Geiger, M; Clauss, Marcus; Sánchez‐Villagra, Marcelo R (2022). The mammalian brain under domestication: Discovering patterns after a century of old and new analyses. Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution, 338(8):460-483.

García-Martín, Ana Belén; Roder, Thomas; Schmitt, Sarah; Zeeh, Friederike; Bruggmann, Rémy; Perreten, Vincent (2022). Whole-genome analyses reveal a novel prophage and cgSNPs-derived sublineages of Brachyspira hyodysenteriae ST196. BMC Genomics, 23(1):131.

Chiapperino, Luca; Paneni, Francesco (2022). Why epigenetics is (not) a biosocial science and why that matters. Clinical Epigenetics, 14(1):144.

Cantoni, Nathan; Sommavilla, Roberto; Seitz, Patrick; Kulenkampff, Elisabeth; Kahn, Stefan; Lambert, Jean-François; Schmidt, Adrian; Zenhaeusern, Reinhard; Balabanov, Stefan (2022). A multicenter real-world evidence study in the Swiss treatment landscape of chronic myeloid leukemia. BMC Cancer, 22:1192.

Mosler, Thorsten; Baymaz, H Irem; Gräf, Justus F; Mikicic, Ivan; Blattner, Georges; Bartlett, Edward; Ostermaier, Matthias; Piccinno, Rossana; Yang, Jiwen; Voigt, Andrea; Gatti, Marco; Pellegrino, Stefania; Altmeyer, Matthias; Luck, Katja; Ahel, Ivan; Roukos, Vassilis; Beli, Petra (2022). PARP1 proximity proteomics reveals interaction partners at stressed replication forks. Nucleic Acids Research, 50(20):11600-11618.

Armignacco, Roberta; Reel, Parminder S; Reel, Smarti; et al; Beuschlein, Felix (2022). Whole blood methylome-derived features to discriminate endocrine hypertension. Clinical Epigenetics, 14(1):142.

Robles-Bolivar, Paula; Bächinger, David; Parra-Perez, Alberto M; Román-Naranjo, Pablo; Escalera-Balsera, Alba; Gallego-Martinez, Alvaro; Eckhard, Andreas H; Lopez-Escamez, Jose A (2022). A novel nonsense variant in the CENPP gene segregates in a Swiss family with autosomal dominant low-frequency sensorineural hearing loss. European Journal of Human Genetics, 30(11):1301-1305.

Wagner, Andreas (2022). Adaptive evolvability through direct selection instead of indirect, second‐order selection. Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution, 338(7):395-404.

Bakhos, David; Blasco, Hélène; Galvin, John J; Ferreira, Carlos R; Blau, Nenad (2022). Clinical and biochemical footprints of inherited metabolic diseases. IX. Metabolic ear disease. Molecular Genetics and Metabolism, 137(3):223-229.

Brantschen, Jeanine; Pellissier, Loïc; Walser, Jean‐Claude; Altermatt, Florian (2022). Evaluation of primer pairs for eDNA-based assessment of Ephemeroptera, Plecoptera, and Trichoptera across a biogeographically diverse region. Environmental DNA, 4(6):1356-1368.

Runge, Jan‐Niklas; König, Barbara; Lindholm, Anna K; Bendesky, Andres (2022). Parent‐offspring inference in inbred populations. Molecular Ecology Resources, 22(8):2981-2993.

Russo, Teresa; Piccolo, Vincenzo; Moscarella, Elvira; Tschandl, Philipp; Kittler, Harald; Paoli, John; Lallas, Aimilios; Braun, Ralph P; et al (2022). Indications for Digital Monitoring of Patients With Multiple Nevi: Recommendations from the International Dermoscopy Society. Dermatology Parctical and Conceptual, 12(4):e2022182.

Tran, Tiffaney; Ternov, Niels K; Weber, Jochen; Barata, Catarina; Berry, Elizabeth G; Doan, Hung Q; Marghoob, Ashfaq A; Seiverling, Elizabeth V; Sinclair, Shelly; Stein, Jennifer A; Stoos, Elizabeth R; Tolsgaard, Martin G; Wolfensperger, Maya; Braun, Ralph P; Nelson, Kelly C (2022). Instructional Strategies to Enhance Dermoscopic Image Interpretation Education: a Review of the Literature. Dermatology Parctical and Conceptual, 12(4):e2022189.

Tran, Tiffaney; Ternov, Niels K; Weber, Jochen; Barata, Catarina; Berry, Elizabeth G; Doan, Hung Q; Marghoob, Ashfaq A; Seiverling, Elizabeth V; Sinclair, Shelly; Stein, Jennifer A; Stoos, Elizabeth R; Tolsgaard, Martin G; Wolfensperger, Maya; Braun, Ralph P; Nelson, Kelly C (2022). Theory-Based Approaches to Support Dermoscopic Image Interpretation Education: A Review of the Literature. Dermatology Parctical and Conceptual, 12(4):e2022188.

Biggel, Michael; Horlbog, Jule; Nüesch-Inderbinen, Magdalena; Chattaway, Marie Anne; Stephan, Roger (2022). Epidemiological links and antimicrobial resistance of clinical Salmonella enterica ST198 isolates: a nationwide microbial population genomic study in Switzerland. Microbial genomics, 8(10):mgen000877.

Alfaro-Alarcón, Alejandro; Hetzel, Udo; Smura, Teemu; Baggio, Francesca; Morales, Juan Alberto; Kipar, Anja; Hepojoki, Jussi (2022). Boid Inclusion Body Disease Is Also a Disease of Wild Boa Constrictors. Microbiology Spectrum, 10(5):e0170522.

Jayakumar, Priyanikha; Figueiredo, Alexandre R T; Kümmerli, Rolf (2022). Evolution of Quorum Sensing in <i>Pseudomonas aeruginosa</i> Can Occur via Loss of Function and Regulon Modulation. mSystems, 7(5):e0035422.

Bulzu, Paul-Adrian; Kavagutti, Vinicius S; Andrei, Adrian-Stefan; Ghai, Rohit (2022). The Evolutionary Kaleidoscope of Rhodopsins. mSystems, 7(5):e0040522.

Thumfart, Kristina M; Lazzeri, Samuel; Manuella, Francesca; Mansuy, Isabelle M (2022). Long-term effects of early postnatal stress on Sertoli cells. Frontiers in Genetics, 13:1024805.

Mauch, Emanuel; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Complete Genome Sequence of an Uncultivated Freshwater Bacteroidota Lineage. Microbiology Resource Announcements, 11(10):e0076622.

Bernet, Julia; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Complete Genome Sequence of an Uncultivated Freshwater Flavobacterium sp. Strain. Microbiology Resource Announcements, 11(10):e0065922.

Ajvazi, Xhesida; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Study of Complete Genome Sequence of Uncultivated Hyphomonadaceae sp. Microbiology Resource Announcements, 11(10):e0076522.

Iyengar, Bharat Ravi; Wagner, Andreas (2022). Bacterial Hsp90 predominantly buffers but does not potentiate the phenotypic effects of deleterious mutations during fluorescent protein evolution. Genetics, 222(4):iyac154.

Wolff, Jonas O; Wierucka, Kaja; Paterno, Gustavo B; Coddington, Jonathan A; Hormiga, Gustavo; Kelly, Michael B J; Herberstein, Marie E; Ramírez, Martín J (2022). Stabilized Morphological Evolution of Spiders Despite Mosaic Changes in Foraging Ecology. Systematic Biology, 71(6):1487-1503.

Gasser, Benedikt; Flück, Martin; Frey, Walter O; Valdivieso, Paola; Spörri, Jörg (2022). Association of Gene Variants for Mechanical and Metabolic Muscle Quality with Cardiorespiratory and Muscular Variables Related to Performance in Skiing Athletes. Genes, 13(10):1798.

Galle, Eva; Wong, Chee-Wai; Ghosh, Adhideb; Desgeorges, Thibaut; Melrose, Kate; Hinte, Laura C; Castellano-Castillo, Daniel; Engl, Magdalena; de Sousa, Joao Agostinho; Ruiz-Ojeda, Francisco Javier; De Bock, Katrien; Ruiz, Jonatan R; von Meyenn, Ferdinand (2022). H3K18 lactylation marks tissue-specific active enhancers. Genome Biology, 23:207.

Martínez-Pizarro, Ainhoa; Leal, Fátima; Holm, Lise Lolle; Doktor, Thomas K; Petersen, Ulrika S S; Bueno, María; Thöny, Beat; Pérez, Belén; Andresen, Brage S; Desviat, Lourdes R (2022). Antisense Oligonucleotide Rescue of Deep-Intronic Variants Activating Pseudoexons in the 6-Pyruvoyl-Tetrahydropterin Synthase Gene. Nucleic Acid Therapeutics, 32(5):378-390.

Kapral, Thomas H; Farnhammer, Fiona; Zhao, Weihao; Lu, Zhi J; Zagrovic, Bojan (2022). Widespread autogenous mRNA–protein interactions detected by CLIP-seq. Nucleic Acids Research, 50(17):9984-9999.

Purtschert-Montenegro, Gabriela; Cárcamo-Oyarce, Gerardo; Pinto-Carbó, Marta; Agnoli, Kirsty; Bailly, Aurélien; Eberl, Leo (2022). Pseudomonas putida mediates bacterial killing, biofilm invasion and biocontrol with a type IVB secretion system. Nature Microbiology, 7(10):1547-1557.

Büttner, Florian A; Winter, Stefan; Stühler, Viktoria; et al; Moch, Holger (2022). A novel molecular signature identifies mixed subtypes in renal cell carcinoma with poor prognosis and independent response to immunotherapy. Genome Medicine, 14:105.

Cremer, Franziska; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Complete Genome Sequence from an Uncultivated Freshwater Elusimicrobiota Lineage. Microbiology Resource Announcements, 11(9):e0042622.

James, Nicholas L; Bond, Monica L; Ozgul, Arpat; Lee, Derek E (2022). Trophic processes constrain seasonal ungulate distributions at two scales in an East African savanna. Journal of Mammalogy, 103(4):956-969.

Inderbitzin, Anne; Loosli, Tom; Kouyos, Roger D; Metzner, Karin J (2022). Quantification of transgene expression in GSH AAVS1 with a novel CRISPR/Cas9-based approach reveals high transcriptional variation. Molecular Therapy - Methods & Clinical Development, 26:107-118.

Michalek, Svenja; Goj, Thomas; Plazzo, Anna Pia; Marovca, Blerim; Bornhauser, Beat; Brunner, Thomas (2022). LRH-1/NR5A2 interacts with the glucocorticoid receptor to regulate glucocorticoid resistance. EMBO Reports, 23(9):e54195.

Winkler, Lennart; Lindholm, Anna K (2022). A meiotic driver alters sperm form and function in house mice: a possible example of spite. Chromosome Research, 30(2-3):151-164.

Angelini, Corrado; Burlina, Alberto; Blau, Nenad; Ferreira, Carlos R (2022). Clinical and biochemical footprints of inherited metabolic disorders: X. Metabolic myopathies. Molecular Genetics and Metabolism, 137(1-2):213-222.

Zvick, Joel; Tarnowska-Sengül, Monika; Ghosh, Adhideb; Bundschuh, Nicola; Gjonlleshaj, Pjeter; Hinte, Laura C; Trautmann, Christine L; Noé, Falko; Qabrati, Xhem; Domenig, Seraina A; Kim, Inseon; Hennek, Thomas; von Meyenn, Ferdinand; Bar-Nur, Ori (2022). Exclusive generation of rat spermatozoa in sterile mice utilizing blastocyst complementation with pluripotent stem cells. Stem Cell Reports, 17(9):1942-1958.

Shlesinger, Danielle; Hong, Kai-Lin; Shammas, Ghazal; Page, Nicolas; Sandu, Ioana; Agrafiotis, Andreas; Kreiner, Victor; Fonta, Nicolas; Vincenti, Ilena; Wagner, Ingrid; Piccinno, Margot; Mariotte, Alexandre; Klimek, Bogna; Dizerens, Raphael; Manero-Carranza, Marcos; Kuhn, Raphael; Ehling, Roy; Frei, Lester; Khodaverdi, Keywan; Panetti, Camilla; Joller, Nicole; Oxenius, Annette; Merkler, Doron; Reddy, Sai T; Yermanos, Alexander (2022). Single-cell immune repertoire sequencing of B and T cells in murine models of infection and autoimmunity. Genes and immunity:183-195.

Kumar, Vikrant; Pouw, Richard B; Autio, Matias I; Sagmeister, Manfred G; Phua, Zai Yang; Borghini, Lisa; Wright, Victoria J; Hoggart, Clive; Pan, Bangfen; Tan, Antson Kiat Yee; Binder, Alexander; Brouwer, Mieke C; Pinnock, Ellie; De Groot, Ronald; Hazelzet, Jan; Emonts, Marieke; Van Der Flier, Michiel; Reiter, Karl; Nöthen, Markus M; Hoffmann, Per; EUCLIDS consortium; Schlapbach, Luregn J; Bellos, Evangelos; Anderson, Suzanne; Secka, Fatou; Martinón-Torres, Federico; Salas, Antonio; Fink, Colin; Carrol, Enitan D; Pollard, Andrew J; et al (2022). Variation in CFHR3 determines susceptibility to meningococcal disease by controlling factor H concentrations. American Journal of Human Genetics, 109(9):1680-1691.

Lintala, Annika; Szirovicza, Leonora; Kipar, Anja; Hetzel, Udo; Hepojoki, Jussi (2022). Persistent Reptarenavirus and Hartmanivirus Infection in Cultured Boid Cells. Microbiology Spectrum, 10(4):e0158522.

Günther, Sira C; Martínez-Romero, Carles; Sempere Borau, Milagros; Pham, Christine T N; García-Sastre, Adolfo; Stertz, Silke (2022). Proteomic Identification of Potential Target Proteins of Cathepsin W for Its Development as a Drug Target for Influenza. Microbiology Spectrum, 10(4):e0092122.

Kerstjens, Stan; Michel, Gabriela; Douglas, Rodney J (2022). Constructive connectomics: How neuronal axons get from here to there using gene-expression maps derived from their family trees. PLoS Computational Biology, 18(8):e1010382.

Kaczmarczyk, Lech; Schleif, Melvin; Dittrich, Lars; Williams, Rhiannan H; Koderman, Maruša; Bansal, Vikas; Rajput, Ashish; Schulte, Theresa; Jonson, Maria; Krost, Clemens; Testaquadra, Fabio J; Bonn, Stefan; Jackson, Walker S (2022). Distinct translatome changes in specific neural populations precede electroencephalographic changes in prion-infected mice. PLoS Pathogens, 18(8):e1010747.

Wang, Shanzhi; Lee, Kyeryoung; Gray, Stephen; Zhang, Yongwei; Tang, Catherine; Morrish, Rikke B; Tosti, Elena; van Oers, Johanna; Amin, Mohammad Ruhul; Cohen, Paula E; MacCarthy, Thomas; Roa, Sergio; Scharff, Matthew D; Edelmann, Winfried; Chahwan, Richard (2022). Role of EXO1 nuclease activity in genome maintenance, the immune response and tumor suppression in Exo1D173A mice. Nucleic Acids Research, 50(14):8093-8106.

Nadeau, Sarah; Thorball, Christian W; Kouyos, Roger; Günthard, Huldrych F; Böni, Jürg; Yerly, Sabine; Perreau, Matthieu; Klimkait, Thomas; Rauch, Andri; Hirsch, Hans H; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Fellay, Jacques; Mitov, Venelin; Stadler, Tanja; Swiss HIV Cohort Study (SHCS) (2022). A Phylogeny-aware GWAS Framework to Correct for Heritable Pathogen Effects on Infectious Disease Traits. Molecular Biology and Evolution, 39(8):msac163.

Etter, Danai; Büchel, Ramona; Patt, Tabea; Biggel, Michael; Tasara, Taurai; Cernela, Nicole; Stevens, Marc J A; Johler, Sophia (2022). Nitrite stress increases staphylococcal enterotoxin C transcription and triggers the SigB regulon. FEMS Microbiology Letters, 369(1):fnac059.

Wagner, Andreas (2022). Competition for nutrients increases invasion resistance during assembly of microbial communities. Molecular Ecology, 31(15):4188-4203.

Pezeshki, Soheil; Warmbier, Ina; Busch, Tobias; Bauerbach, Elke; Szövenyi, Peter; Petersen, Maike (2022). The first step into phenolic metabolism in the hornwort Anthoceros agrestis: molecular and biochemical characterization of two phenylalanine ammonia-lyase isoforms. Planta, 256(2):33.

Rickenbacher, Marc; Gültekin, Nejla; Stanga, Zeno; Bender, Nicole; Staub, Kaspar; Wells, Jonathan C; Matthes, Katarina L; Reber, Emile (2022). The role of body height as a co-factor of excess weight in Switzerland. American Journal of Human Biology, 34(8):e23754.

Batzilla, Alina; Lu, Junyan; Kivioja, Jarno; Putzker, Kerstin; Lewis, Joe; Zenz, Thorsten; Huber, Wolfgang (2022). Inferring tumor-specific cancer dependencies through integrating ex vivo drug response assays and drug-protein profiling. PLoS Computational Biology, 18(8):e1010438.

Rice, Timothy; Prout, Tracy A; Walther, Andreas; Hoffman, Leon (2022). Defense-Oriented Psychoanalytic Psychotherapy as a Tailored Treatment for Boys: Neurobiological Underpinnings to Male-Specific Response Tested in Regulation-Focused Psychotherapy for Children. Behavioral Sciences, 12(8):248.

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Marconi, Guya Diletta; Diomede, Francesca; Trubiani, Oriana; Porcheri, Cristina; Mitsiadis, Thimios A (2022). Exosomes as Carriers for Notch Molecules. In: Dongyu, Jia. Notch Signaling Research : Methods and Protocols. New York, NY: Springer, 197-208.

Palles, Claire; West, Hannah D; Chew, Edward; et al; Koelzer, Viktor H (2022). Germline MBD4 deficiency causes a multi-tumor predisposition syndrome. American Journal of Human Genetics, 109(5):953-960.

Cervantes-Gracia, Karla; Chahwan, Richard; Husi, Holger (2022). Integrative OMICS Data-Driven Procedure Using a Derivatized Meta-Analysis Approach. Frontiers in Genetics, 13:828786.

Rust, Ruslan; Walker, Tara L (2022). Isolation and Culture of Adult Hippocampal Precursor Cells as Free-Floating Neurospheres. In: Deleyrolle, Loic P. Neural Progenitor Cells : Methods and Protocols. New York, NY: Springer, 33-44.

Zosel, Franziska; Holla, Andrea; Schuler, Benjamin (2022). Labeling of Proteins for Single-Molecule Fluorescence Spectroscopy. In: Munoz, Victor. Protein Folding Methods and Protocols. New York: Springer, 207-233.

Romdhane, Sana; Spor, Aymé; Banerjee, Samiran; Breuil, Marie-Christine; Bru, David; Chabbi, Abad; Hallin, Sara; van der Heijden, Marcel G A; Saghai, Aurélien; Philippot, Laurent (2022). Land-use intensification differentially affects bacterial, fungal and protist communities and decreases microbiome network complexity. Environmental Microbiome, 17:1.

Stoy, Henriette; Lang, Kevin S; Merrikh, Houra; Lopes, Massimo (2022). Locus-Specific Analysis of Replication Dynamics and Detection of DNA-RNA Hybrids by Immuno Electron Microscopy. In: Aguilera, Andrés; Ruzov, Alexey. R-Loops: Methods and Protocols. New York: Springer, 67-89.

Giordano, Deborah; Langini, Cassiano; Caflisch, Amedeo; Marabotti, Anna; Facchiano, Angelo (2022). Molecular dynamics analysis of the structural properties of the transglutaminases of Kutzneria albida and Streptomyces mobaraensis. Computational and Structural Biotechnology Journal, 20:3924-3934.

Rahman, Shamima; Baumgartner, Matthias; Morava, Eva; Patterson, Marc; Peters, Verena; Zschocke, Johannes (2022). Quo vadis now: Beyond genomics to an era of personalised medicine. Journal of Inherited Metabolic Disease, 45(2):129-131.

Hadzic, Mélodie C A S; Sigel, Roland K O; Börner, Richard (2022). Single-Molecule Kinetic Studies of Nucleic Acids by Förster Resonance Energy Transfer. In: Steger, Gerhard; Rosenbach, Hannah; Span, Ingrid. DNAzymes : Methods and Protocols. New York: Springer, 173-190.

2021

De Rossi, Pierre; Lewis, Amanda J; Furrer, Johanna; De Vos, Laura; Demeter, Tomas; Zbinden, Aurélie; Zhong, Weijia; Wiersma, Vera I; Scialo, Carlo; Weber, Julien; Guo, Zhongning; Scaramuzza, Stefano; Di Fabrizio, Marta; Böing, Carolin; Castaño‐Díez, Daniel; Al‐Amoudi, Ashraf; Pérez-Berlanga, Manuela; Lashley, Tammaryn; Stahlberg, Henning; Polymenidou, Magdalini (2021). FTLD‐TDP assemblies seed neoaggregates with subtype‐specific features via a prion‐like cascade. EMBO Reports, 22(12):e53877.

Zhang, Xiang; Schuhmachers, Patrick; Mourão, André; et al; Murer, Anita; Münz, Christian (2021). PLK1-dependent phosphorylation restrains EBNA2 activity and lymphomagenesis in EBV-infected mice. EMBO Reports, 22(12):e53007.

Panagopoulos, Andreas; Altmeyer, Matthias (2021). When the RAP (80) fades out, you can hear BRCA1 RING. EMBO Reports, 22(12):e54116.

Emmenegger, Marc; Kumar, Sreedhar Saseendran; Emmenegger, Vishalini; Malinauskas, Tomas; Buettner, Thomas; Rose, Laura; Schierack, Peter; Sprinzl, Martin F; Sommer, Clemens J; Lackner, Karl J; Aguzzi, Adriano; Roggenbuck, Dirk; Frauenknecht, Katrin B M (2021). Anti-prothrombin autoantibodies enriched after infection with SARS-CoV-2 and influenced by strength of antibody response against SARS-CoV-2 proteins. PLoS Pathogens, 17(12):e1010118.

Bai, Yu; Caussinus, Emmanuel; Leo, Stefano; Bosshardt, Fritz; Myachina, Faina; Rot, Gregor; Robinson, Mark D; Lehner, Christian F (2021). A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells. BMC Genomics, 22:771.

Milosavljevic, Stefan; Kuo, Tony; Decarli, Samuele; Mohn, Lucas; Sese, Jun; Shimizu, Kentaro K; Shimizu-Inatsugi, Rie; Robinson, Mark D (2021). ARPEGGIO: Automated Reproducible Polyploid EpiGenetic GuIdance workflOw. BMC Genomics, 22:547.

Gutzmer, Ralf; Robert, Caroline; Loquai, Carmen; Schadendorf, Dirk; Squittieri, Nicholas; Arntz, Ramon; Martelli, Serena; Dummer, Reinhard (2021). Assessment of various efficacy outcomes using ERIVANCE-like criteria in patients with locally advanced basal cell carcinoma receiving sonidegib: results from a preplanned sensitivity analysis. BMC Cancer, 21:1244.

Hiltpold, Maya; Kadri, Naveen Kumar; Janett, Fredi; Witschi, Ulrich; Schmitz-Hsu, Fritz; Pausch, Hubert (2021). Autosomal recessive loci contribute significantly to quantitative variation of male fertility in a dairy cattle population. BMC Genomics, 22(1):225.

Avilla-Royo, Eva; Gegenschatz-Schmid, Katharina; Grossmann, Jonas; Kockmann, Tobias; Zimmermann, Roland; Snedeker, Jess Gerrit; Ochsenbein-Kölble, Nicole; Ehrbar, Martin (2021). Comprehensive quantitative characterization of the human term amnion proteome. Matrix Biology Plus, 12:100084.

Çilingir, F G; Hansen, Dennis; Ozgul, Arpat; Grossen, Christine (2021). Design of SNP markers for Aldabra giant tortoises using low coverage ddRAD-seq. Conservation Genetics Resources, 13(4):409-412.

Mathis, Déborah; Sass, Jörn Oliver; Graubner, Claudia; Schoster, Angelika (2021). Diagnosis of atypical myopathy based on organic acid and acylcarnitine profiles and evolution of biomarkers in surviving horses. Molecular Genetics and Metabolism Reports, 29:100827.

Alther, Roman; Fronhofer, Emanuel A; Altermatt, Florian (2021). Dispersal behaviour and riverine network connectivity shape the genetic diversity of freshwater amphipod metapopulations. Molecular Ecology, 30(24):6551-6565.

Boehi, Flurina; Manetsch, Patrick; Hottiger, Michael O (2021). Interplay between ADP-ribosyltransferases and essential cell signaling pathways controls cellular responses. Cell Discovery, 7(1):104.

Reyer, Heinz‐Ulrich (2021). Josh Van Buskirk (1959–2021). Evolution, 75(12):3228-3232.

Häberle, Johannes; Moore, Marvin B; Haskins, Nantaporn; Rüfenacht, Véronique; Rokicki, Dariusz; Rubio‐Gozalbo, Estela; Tuchman, Mendel; Longo, Nicola; Yandell, Mark; Andrews, Ashley; AhMew, Nicholas; Caldovic, Ljubica (2021). Noncoding sequence variants define a novel regulatory element in the first intron of the N-acetylglutamate synthase gene. Human Mutation, 42(12):1624-1636.

Bernardo-Faura, Marti; Rinas, Melanie; Wirbel, Jakob; Pertsovskaya, Inna; Pliaka, Vicky; Messinis, Dimitris E; Vila, Gemma; Sakellaropoulos, Theodore; Faigle, Wolfgang; Stridh, Pernilla; Behrens, Janina R; Olsson, Tomas; Martin, Roland; Paul, Friedemann; Alexopoulos, Leonidas G; Villoslada, Pablo; Saez-Rodriguez, Julio (2021). Prediction of combination therapies based on topological modeling of the immune signaling network in multiple sclerosis. Genome Medicine, 13:117.

Schmeing, Stephan; Robinson, Mark D (2021). ReSeq simulates realistic Illumina high-throughput sequencing data. Genome Biology, 22:67.

Piazza, Stefano; Campa, Manuela; Pompili, Valerio; Costa, Lorenza Dalla; Salvagnin, Umberto; Nekrasov, Vladimir; Zipfel, Cyril; Malnoy, Mickael (2021). The Arabidopsis pattern recognition receptor EFR enhances fire blight resistance in apple. Horticulture Research, 8:204.

Lankheet, Imke; Vicente, Mário; Barbieri, Chiara; Schlebusch, Carina (2021). The performance of common SNP arrays in assigning African mitochondrial haplogroups. BMC Genomics, 22:43.

Greber, Urs F (2021). Two years into COVID-19 – Lessons in SARS-CoV-2 and a perspective from papers in FEBS Letters. FEBS letters, 595(23):2847-2853.

Pape, Thorben; Hunkemöller, Anna Maria; Kümpers, Philipp; Haller, Hermann; David, Sascha; Stahl, Klaus (2021). Targeting the "sweet spot" in septic shock - A perspective on the endothelial glycocalyx regulating proteins Heparanase-1 and -2. Matrix Biology Plus, 12:100095.

Peña‐Hernández, Rodrigo; Aprigliano, Rossana; Carina Frommel, Sandra; Pietrzak, Karolina; Steiger, Seraina; Roganowicz, Marcin; Lerra, Luigi; Bizzarro, Juliana; Santoro, Raffaella (2021). BAZ2A‐mediated repression via H3K14ac‐marked enhancers promotes prostate cancer stem cells. EMBO Reports, 22(11):e53014.

Denoth-Lippuner, Annina; Jaeger, Baptiste N; Liang, Tong; Royall, Lars N; Chie, Stefanie E; Buthey, Kilian; Machado, Diana; Korobeynyk, Vladislav I; Kruse, Merit; Munz, Clara M; Gerbaulet, Alexander; Simons, Benjamin D; Jessberger, Sebastian (2021). Visualization of individual cell division history in complex tissues using iCOUNT. Cell Stem Cell, 28(11):2020-2034.e12.

Polanco F., Andrea; Richards, Eilísh; Flück, Benjamin; Valentini, Alice; Altermatt, Florian; Brosse, Sébastien; Walser, Jean‐Claude; Eme, David; Marques, Virginie; Manel, Stéphanie; Albouy, Camille; Dejean, Tony; Pellissier, Loïc (2021). Comparing the performance of 12S mitochondrial primers for fish environmental DNA across ecosystems. Environmental DNA, 3(6):1113-1127.

San Roman, Magdalena; Wagner, Andreas (2021). Diversity begets diversity during community assembly until ecological limits impose a diversity ceiling. Molecular Ecology, 30(22):5874-5887.

Freitag, Johanna R B; Wilkens, Mirja R; Muscher-Banse, A S; Gerstner, Kerstin; Schnepel, N; Torgerson, Paul R; Liesegang, Annette (2021). Effects of diets differing in dietary cation-anion difference and calcium concentration on calcium homeostasis in neutered male sheep. Journal of Dairy Science, 104(11):11537-11552.

Hirota, Shun K; Yasumoto, Akiko A; Nitta, Kozue; Tagane, Misa; Miki, Nozomu; Suyama, Yoshihisa; Yahara, Tetsukazu (2021). Evolutionary history of Hemerocallis in Japan inferred from chloroplast and nuclear phylogenies and levels of interspecific gene flow. Molecular Phylogenetics and Evolution, 164:107264.

Kido, Jun; Matsumoto, Shirou; Häberle, Johannes; Inomata, Yukihiro; Kasahara, Mureo; Sakamoto, Seisuke; Horikawa, Reiko; Tanemura, Akihiro; Okajima, Hideaki; Suzuki, Tatsuya; Nakamura, Kimitoshi (2021). Role of liver transplantation in urea cycle disorders: Report from a nationwide study in Japan. Journal of Inherited Metabolic Disease, 44(6):1311-1322.

Cervantes-Gracia, Karla; Gramalla-Schmitz, Anna; Weischedel, Julian; Chahwan, Richard (2021). APOBECs orchestrate genomic and epigenomic editing across health and disease. Trends in Genetics : Tig, 37(11):1028-1043.

VanSickle, Elizabeth A; Michael, Julianne; Bachmann, André S; Rajasekaran, Surender; Prokop, Jeremy W; Kuzniecky, Ruben; Hofstede, Floris C; Steindl, Katharina; Rauch, Anita; Lipson, Mark H; Bupp, Caleb P (2021). Expanding the phenotype: Four new cases and hope for treatment in Bachmann-Bupp syndrome. American Journal of Medical Genetics. Part A, 185(11):3485-3493.

Zheng, Jia; Guo, Ning; Wagner, Andreas (2021). Mistranslation Reduces Mutation Load in Evolving Proteins through Negative Epistasis with DNA Mutations. Molecular Biology and Evolution, 38(11):4792-4804.

Heinzer, Daniel; Avar, Merve; Pease, Daniel Patrick; Dhingra, Ashutosh; Yin, Jiang-An; Schaper, Elke; Doğançay, Berre; Emmenegger, Marc; Spinelli, Anna; Maggi, Kevin; Chincisan, Andra; Mead, Simon; Hornemann, Simone; Heutink, Peter; Aguzzi, Adriano (2021). Novel regulators of PrPC biosynthesis revealed by genome-wide RNA interference. PLoS Pathogens, 17(10):e1010013.

Balakrishna, Suraj; Salazar-Vizcaya, Luisa; Schmidt, Axel J; Kachalov, Viacheslav; Kusejko, Katharina; Thurnheer, Maria Christine; Roth, Jan A; Nicca, Dunja; Cavassini, Matthias; Battegay, Manuel; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F; Rauch, Andri; Kouyos, Roger D; Swiss HIV Cohort Study (2021). Assessing the drivers of syphilis among men who have sex with men in Switzerland reveals a key impact of screening frequency: A modelling study. PLoS Computational Biology, 17(10):e1009529.

Flores Ramos, Stephany; Brugger, Silvio D; Escapa, Isabel Fernandez; Skeete, Chelsey A; Cotton, Sean L; Eslami, Sara M; Gao, Wei; Bomar, Lindsey; Tran, Tommy H; Jones, Dakota S; Minot, Samuel; Roberts, Richard J; Johnston, Christopher D; Lemon, Katherine P (2021). Genomic Stability and Genetic Defense Systems in Dolosigranulum pigrum, a Candidate Beneficial Bacterium from the Human Microbiome. mSystems, 6(5):e0042521.

Brachet, Morgane A A; Vullioud, Philippe; Ganswindt, Andre; Manser, Marta B; Keller, Matthieu; Clutton-Brock, Tim H (2021). Parity predicts allonursing in a cooperative breeder. Journal of Mammalogy, 102(5):1365-1374.

Tromans-Coia, Callum; Sanchi, Andrea; Moeller, Giuliana K; Timinszky, Gyula; Lopes, Massimo; Ahel, Ivan (2021). TARG1 protects against toxic DNA ADP-ribosylation. Nucleic Acids Research, 49(18):10477-10492.

Börold, Jacob; Eletto, Davide; Busnadiego, Idoia; Mair, Nina K; Moritz, Eva; Schiefer, Samira; Schmidt, Nora; Petric, Philipp P; Wong, W Wei-Lynn; Schwemmle, Martin; Hale, Benjamin G (2021). BRD9 is a druggable component of interferon-stimulated gene expression and antiviral activity. EMBO Reports, 22(10):e52823.

Säle, Verena; Palenzuela, Javier; Azcón-Aguilar, Concepción; Sánchez-Castro, Iván; da Silva, Gladstone Alves; Seitz, Benjamin; Sieverding, Ewald; van der Heijden, Marcel G A; Oehl, Fritz (2021). Ancient lineages of arbuscular mycorrhizal fungi provide little plant benefit. Mycorrhiza, 31(5):559-576.

Birch, Joanne L; Kocyan, Alexander (2021). Biogeography of the monocotyledon astelioid clade (Asparagales): A history of long-distance dispersal and diversification with emerging habitats. Molecular Phylogenetics and Evolution, 163:107203.

Leigh, Deborah M; Lischer, Heidi E L; Guillaume, Frédéric; Grossen, Christine; Günther, Torsten (2021). Disentangling adaptation from drift in bottlenecked and reintroduced populations of Alpine ibex. Molecular Ecology Resources, 21(7):2350-2363.

Figueiredo, Alexandre R T; Wagner, Andreas; Kümmerli, Rolf (2021). Ecology drives the evolution of diverse social strategies in Pseudomonas aeruginosa. Molecular Ecology, 30(20):5214-5228.

Pawlowski, Jan; Apothéloz‐Perret‐Gentil, Laure; Altermatt, Florian (2021). Environmental versus extra‐organismal DNA. Molecular Ecology, 30(19):4606-4607.

Hettmer, Simone; Dachy, Guillaume; Seitz, Guido; Agaimy, Abbas; Duncan, Catriona; Jongmans, Marjolijn; Hirsch, Steffen; Kventsel, Iris; Kordes, Uwe; de Krijger, Ronald R; Metzler, Markus; Michaeli, Orli; Nemes, Karolina; Poluha, Anna; Ripperger, Tim; Russo, Alexandra; Smetsers, Stephanie; Sparber-Sauer, Monika; Stutz, Eveline; Bourdeaut, Franck; Kratz, Christian P; Demoulin, Jean-Baptiste (2021). Genetic testing and surveillance in infantile myofibromatosis: a report from the SIOPE Host Genome Working Group. Familial cancer, 20(4):327-336.

Unglaub, Bianca; Cayuela, Hugo; Schmidt, Benedikt R; Preißler, Kathleen; Glos, Julian; Steinfartz, Sebastian (2021). Context‐dependent dispersal determines relatedness and genetic structure in a patchy amphibian population. Molecular Ecology, 30(20):5009-5028.

García-Martín, Ana B; Schmitt, Sarah; Zeeh, Friederike; Perreten, Vincent (2021). Complete Circular Genome Sequences of Brachyspira hyodysenteriae Isolates of the Four Different Sequence Types Causing Swine Dysentery in Switzerland. Microbiology Resource Announcements, 10(39):e0084721.

Immel, Alexander; Key, Felix M; Szolek, András; et al; Schuenemann, Verena J; Reiter, Ella (2021). Analysis of genomic DNA from medieval plague victims suggests long-term effect of Yersinia pestis on human immunity genes. Molecular Biology and Evolution, 38(10):4059-4076.

Cuénod, Aline; Wüthrich, Daniel; Seth-Smith, Helena M B; Ott, Chantal; Gehringer, Christian; Foucault, Frédéric; Mouchet, Roxanne; Kassim, Ali; Revathi, Gunturu; Vogt, Deborah R; von Felten, Stefanie; Bassetti, Stefano; Tschudin-Sutter, Sarah; Hettich, Timm; Schlotterbeck, Götz; Homberger, Christina; Casanova, Carlo; Moran-Gilad, Jacob; Sagi, Orli; Rodríguez-Sánchez, Belén; Müller, Franco; Aerni, Martina; Gaia, Valeria; van Dessel, Helke; Kampinga, Greetje A; Müller, Claudia; Daubenberger, Claudia; Pflüger, Valentin; Egli, Adrian (2021). Whole-genome sequence-informed MALDI-TOF MS diagnostics reveal importance of Klebsiella oxytoca group in invasive infections: a retrospective clinical study. Genome Medicine, 13:150.

Posada-Céspedes, Susana; Van Zyl, Gert; Montazeri, Hesam; Kuipers, Jack; Rhee, Soo-Yon; Kouyos, Roger; Günthard, Huldrych F; Beerenwinkel, Niko (2021). Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C. PLoS Computational Biology, 17(9):e1008363.

Striednig, Bianca; Lanner, Ulrike; Niggli, Selina; Katic, Ana; Vormittag, Simone; Brülisauer, Sabrina; Hochstrasser, Ramon; Kaech, Andres; Welin, Amanda; Flieger, Antje; Ziegler, Urs; Schmidt, Alexander; Hilbi, Hubert; Personnic, Nicolas (2021). Quorum sensing governs a transmissive Legionella subpopulation at the pathogen vacuole periphery. EMBO Reports, 22(9):e52972.

Kolesnik-Goldmann, Natalia; Bodendoerfer, Elias; Röthlin, Kim; Herren, Sebastian; Imkamp, Frank; Marchesi, Martina; Mancini, Stefano (2021). Rapid Detection of PBP2a in Staphylococci from Shortly Incubated Subcultures of Positive Blood Cultures by an Immunochromatographic Assay. Microbiology Spectrum, 9(1):e0046221.

Ferreira, Carlos R; Martinelli, Diego; Blau, Nenad (2021). Clinical and biochemical footprints of inherited metabolic diseases. VI. Metabolic dermatoses. Molecular Genetics and Metabolism, 134(1-2):87-95.

Bräunlich, Stephanie; Koller, Teresa; Glauser, Gaétan; Krattinger, Simon G; Keller, Beat (2021). Expression of the wheat disease resistance gene Lr34 in transgenic barley leads to accumulation of abscisic acid at the leaf tip. Plant Physiology and Biochemistry, 166:950-957.

Martin, Roland; Sospedra, Mireia; Eiermann, Thomas; Olsson, Tomas (2021). Multiple sclerosis: doubling down on MHC. Trends in Genetics : Tig, 37(9):784-797.

Corrêa, Thiago; Feltes, Bruno César; Schinzel, Albert; Riegel, Mariluce; Riegel, Mariluce (2021). Network-based analysis using chromosomal microdeletion syndromes as a model. American Journal of Medical Genetics. Part C: Seminars in Medical Genetics, 187(3):337-348.

Salzer, Ralf; Clark, Jordan J; Vaysburd, Marina; Chang, Veronica T; Albecka, Anna; Kiss, Leo; Sharma, Parul; Gonzalez Llamazares, Andres; Kipar, Anja; Hiscox, Julian A; Owen, Andrew; Aricescu, A Radu; Stewart, James P; James, Leo C; Löwe, Jan (2021). Single‐dose immunisation with a multimerised SARS‐CoV‐2 receptor binding domain (RBD) induces an enhanced and protective response in mice. FEBS letters, 595(18):2323-2340.

Sato, Takehiro; Adachi, Noboru; Kimura, Ryosuke; Hosomichi, Kazuyoshi; Yoneda, Minoru; Oota, Hiroki; Tajima, Atsushi; Toyoda, Atsushi; Kanzawa-Kiriyama, Hideaki; Matsumae, Hiromi; Koganebuchi, Kae; Shimizu, Kentaro K; Shinoda, Ken-Ichi; Hanihara, Tsunehiko; Weber, Andrzej; Kato, Hirofumi; Ishida, Hajime (2021). Whole Genome Sequencing of a 900-year-old Human Skeleton Supports Two Past Migration Events from the Russian Far East to Northern Japan. Genome Biology and Evolution, 13(9):evab192.

Tran, Christel; Turolla, Licia; Ballhausen, Diana; Buros, Sandrine Cornaz; Teav, Tony; Gallart-Ayala, Hector; Ivanisevic, Julijana; Faouzi, Mohamed; Lefeber, Dirk J; Ivanovski, Ivan; Giangiobbe, Sara; Caraffi, Stefano Giuseppe; Garavelli, Livia; Superti-Furga, Andrea (2021). The fate of orally administered sialic acid: First insights from patients with N-acetylneuraminic acid synthase deficiency and control subjects. Molecular Genetics and Metabolism Reports, 28:100777.

Generali, Melanie; Satheesha, Sampoorna; Bode, Peter K; Wanner, Debora; Schäfer, Beat W; Casanova, Elisa A (2021). High Frequency of Tumor Propagating Cells in Fusion-Positive Rhabdomyosarcoma. Genes, 12(9):17.

Peterhans, Sophie; Stevens, Marc J A; Cernela, Nicole; Sidler, Xaver; Stephan, Roger; Scherrer, Simone (2021). Draft genome sequences of two clinical actinobacillus pleuropneumoniae serotype 19 strains from pigs in Switzerland. Microbiology Resource Announcements, 10(34):e0058821.

Ge, Xiangyu; Frank-Bertoncelj, Mojca; Klein, Kerstin; McGovern, Amanda; Kuret, Tadeja; Houtman, Miranda; Burja, Blaž; Micheroli, Raphael; Shi, Chenfu; Marks, Miriam; Filer, Andrew; Buckley, Christopher D; Orozco, Gisela; Distler, Oliver; Morris, Andrew P; Martin, Paul; Eyre, Stephen; Ospelt, Caroline (2021). Functional genomics atlas of synovial fibroblasts defining rheumatoid arthritis heritability. Genome Biology, 22:247.

Song, Fei; Owczarek-Lipska, Marta; Ahmels, Tim; Book, Marius; Aisenbrey, Sabine; Menghini, Moreno; Barthelmes, Daniel; Schrader, Stefan; Spital, Georg; Neidhardt, John (2021). High-Throughput Sequencing to Identify Mutations Associated with Retinal Dystrophies. Genes, 12(8):1269.

Hepojoki, Jussi; Cabrera, Luz E; Hepojoki, Satu; Bellomo, Carla; Kareinen, Lauri; Andersson, Leif C; Vaheri, Antti; Mäkelä, Satu; Mustonen, Jukka; Vapalahti, Olli; Martinez, Valeria; Strandin, Tomas (2021). Hantavirus infection-induced B cell activation elevates free light chains levels in circulation. PLoS Pathogens, 17(8):e1009843.

Biggel, Michael; Hoehn, Sarah; Schmitt, Kira; Frei, Andrea; Jans, Christoph; Stephan, Roger (2021). Complete Genome Sequence of Escherichia coli Sequence Type 1193 Isolate AVS0096, Recovered from River Water in Switzerland. Microbiology Resource Announcements, 10(31):e0060721.

Dulla, Kalyan; Slijkerman, Ralph; van Diepen, Hester C; Albert, Silvia; Dona, Margo; et al; Zang, Jingjing; Neuhauss, Stephan C F (2021). Antisense oligonucleotide-based treatment of retinitis pigmentosa caused by USH2A exon 13 mutations. Molecular Therapy, 29(8):2441-2455.

Florez-Rueda, Ana Marcela; Fiscalini, Flurin; Roth, Morgane; Grossniklaus, Ueli; Städler, Thomas (2021). Endosperm and Seed Transcriptomes Reveal Possible Roles for Small RNA Pathways in Wild Tomato Hybrid Seed Failure. Genome Biology and Evolution, 13(8):evab107.

Frei, Daniel; Veekman, Elisabeth; Grogg, Daniel; Stoffel-Studer, Ingrid; Morishima, Aki; Shimizu-Inatsugi, Rie; Yates, Steven; Shimizu, Kentaro K; Frey, Jürg E; Studer, Bruno; Copetti, Dario (2021). Ultralong Oxford Nanopore reads enable the development of a reference-grade perennial ryegrass genome assembly. Genome Biology and Evolution, 13(8):evab159.

Patriki, D; Baltensperger, N; Berg, J; Cooper, L T; Kissel, C K; Kottwitz, J; Lovrinovic, M; Manka, R; Scherff, F; Schmied, C; Tanner, F C; Luescher, T F; Heidecker, Bettina (2021). A Prospective Pilot Study to Identify a Myocarditis Cohort who may Safely Resume Sports Activities 3 Months after Diagnosis. Journal of Cardiovascular Translational Research, 14(4):670-673.

De Nardo, Alessio N; Roy, Jeannine; Sbilordo, Sonja H; Lüpold, Stefan (2021). Condition‐dependent interaction between mating success and competitive fertilization success in Drosophila melanogaster. Evolution, 75(8):2014-2026.

Findeisen, Eva; Südekum, Karl‐Heinz; Fritz, Julia; Hummel, Jürgen; Clauss, Marcus (2021). Increasing food intake affects digesta retention, digestibility and gut fill but not chewing efficiency in domestic rabbits (Oryctolagus cuniculus). Journal of Experimental Zoology. Part A, Ecological and Integrative Physiology, 335(7):614-622.

Riar, Amandeep K; Chhuneja, Parveen; Keller, Beat; Singh, Kuldeep (2021). Mechanism of leaf rust resistance in wheat wild relatives, Triticum monococcum L. and T. boeoticum L. Plant Genetic Resources, 19(4):320-327.

Wilson, Laura A B; Balcarcel, Ana; Geiger, Madeleine; Heck, Laura; Sánchez‐Villagra, Marcelo R (2021). Modularity patterns in mammalian domestication: Assessing developmental hypotheses for diversification. Evolution Letters, 5(4):385-396.

Stritt, Christoph; Thieme, Michael; Roulin, Anne C (2021). Rare transposable elements challenge the prevailing view of transposition dynamics in plants. American Journal of Botany, 108(8):1310-1314.

Eichenberger, Ramon M (2021). Isolation and Analysis of MicroRNAs from Extracellular Vesicles of the Parasitic Model Nematodes Nippostrongylus brasiliensis and Trichuris muris. In: de Pablos, Luis M; Sotillo, Javier. Parasite Genomics : Methods and Protocols. Vereinigtes Königreich: Springer, 319-332.

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Kachalov, Viacheslav N; Nguyen, Huyen; Balakrishna, Suraj; Salazar-Vizcaya, Luisa; Sommerstein, Rami; Kuster, Stefan P; Hauser, Anthony; Abel Zur Wiesch, Pia; Klein, Eili; Kouyos, Roger D (2021). Identifying the drivers of multidrug-resistant Klebsiella pneumoniae at a European level. PLoS Computational Biology, 17:e1008446.

Tusup, Marina; Cheng, Phil F; Picardi, Ernesto; Raziunaite, Austeja; Dummer, Reinhard; Levesque, Mitchell P; French, Lars E; Guenova, Emmanuella; Kundig, Thomas M; Pascolo, Steve (2021). Evaluation of the Interplay between the ADAR Editome and Immunotherapy in Melanoma. Non-Coding RNA, 7:5.

Mallona, Izaskun; Ilie, Ioana Mariuca; Karemaker, Ino Dominiek; Butz, Stefan; Manzo, Massimiliano; Caflisch, Amedeo; Baubec, Tuncay (2021). Flanking sequence preference modulates de novo DNA methylation in the mouse genome. Nucleic Acids Research, 49(1):145-157.

Hussung, Saskia; Akhoundova, Dilara; Hipp, Julian; Follo, Marie; Klar, Rhena F U; Philipp, Ulrike; Scherer, Florian; von Bubnoff, Nikolas; Duyster, Justus; Boerries, Melanie; Wittel, Uwe; Fritsch, Ralph M (2021). Longitudinal analysis of cell-free mutated KRAS and CA 19-9 predicts survival following curative resection of pancreatic cancer. BMC Cancer, 21:49.

Wang, Yuluan; Soneson, Charlotte; Malinowska, Anna L; Laski, Artur; Ghosh, Souvik; Kanitz, Alexander; Gebert, Luca F R; Robinson, Mark D; Hall, Jonathan (2021). MiR-CLIP reveals iso-miR selective regulation in the miR-124 targetome. Nucleic Acids Research, 49(1):25-37.

Szklarczyk, Damian; Gable, Annika L; Nastou, Katerina C; Lyon, David; Kirsch, Rebecca; Pyysalo, Sampo; Doncheva, Nadezhda T; Legeay, Marc; Fang, Tao; Bork, Peer; Jensen, Lars J; von Mering, Christian (2021). The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets. Nucleic Acids Research, 49(D1):D605-D612.

Kubacki, Jakub; Hardmeier, Isabelle; Qi, Weihong; Flacio, Eleonora; Tonolla, Mauro; Fraefel, Cornel (2021). Complete genome sequence of a Rhabdovirus strain from culex mosquitos collected in Southern Switzerland. Microbiology Resource Announcements, 10(1):e01234-20.

Keles, Esin; Malama, Eleni; Bozukova, Siyka; Siuda, Mathias; Wyck, Sarah; Witschi, Ulrich; Bauersachs, Stefan; Bollwein, Heinrich (2021). The micro-RNA content of unsorted cryopreserved bovine sperm and its relation to the fertility of sperm after sex-sorting. BMC Genomics, 22(1):30.

Haug, Patricia; Koller, Samuel; Maggi, Jordi; Lang, Elena; Feil, Silke; Wlodarczyk, Agnès; Bähr, Luzy; Steindl, Katharina; Rohrbach, Marianne; Gerth-Kahlert, Christina; Berger, Wolfgang (2021). Whole Exome Sequencing in Coloboma/Microphthalmia: Identification of Novel and Recurrent Variants in Seven Genes. Genes, 12(1):E65.

Ferreira, Carlos R; Rahman, Shamima; Keller, Markus; Zschocke, Johannes; et al; Baumgartner, Matthias R (2021). An International Classification of Inherited Metabolic Disorders (ICIMD). Journal of Inherited Metabolic Disease, 44:164-177.

Sticco, Matthew J; Peña Palomino, Perla A; Lukacsovich, David; Thompson, Brianna L; Földy, Csaba; Ressl, Susanne; Martinelli, David C (2021). C1QL3 promotes cell‐cell adhesion by mediating complex formation between ADGRB3/BAI3 and neuronal pentraxins. FASEB Journal, 35(1):e21194.

Brown, Steven A; Sinues, Pablo (2021). Circadian Metabolomics from Breath. In: Brown, Steven A. Circadian Clocks : Methods and Protocols. New York: Springer, 149-156.

Zabulica, Mihaela; Srinivasan, Raghuraman C; Akcakaya, Pinar; Allegri, Gabriella; Bestas, Burcu; Firth, Mike; Hammarstedt, Christina; Jakobsson, Tomas; Jakobsson, Towe; Ellis, Ewa; Jorns, Carl; Makris, Georgios; Scherer, Tanja; Rimann, Nicole; van Zuydam, Natalie R; Gramignoli, Roberto; Forslöw, Anna; Engberg, Susanna; Maresca, Marcello; Rooyackers, Olav; Thöny, Beat; Häberle, Johannes; Rosen, Barry; Strom, Stephen C (2021). Correction of a urea cycle defect after ex vivo gene editing of human hepatocytes. Molecular Therapy, 29(5):1903-1917.

Hörster, Friederike; Tuncel, Ali Tunç; Gleich, Florian; Plessl, Tanja; Froese, Sean D; Garbade, Sven F; Kölker, Stefan; Baumgartner, Matthias R (2021). Delineating the clinical spectrum of isolated methylmalonic acidurias: cblA and mut. Journal of Inherited Metabolic Disease, 44(1):193-214.

Tayyrov, Annageldi; Schnetzler, Michèle; Gillis-Germitsch, Nina; Schnyder, Manuela (2021). Genetic diversity of the cardiopulmonary canid nematode Angiostrongylus vasorum within and between rural and urban fox populations. Infection, Genetics and Evolution, 87:104618.

Carraro, Luca; Stauffer, Julian B; Altermatt, Florian (2021). How to design optimal eDNA sampling strategies for biomonitoring in river networks. Environmental DNA, 3(1):157-172.

Thieme, Michael; Roulin, Anne C (2021). Identification of Active Transposable Elements in Plants: The Mobilome-Seq Approach. In: Cho, Jungnam. Plant Transposable Elements. New York: Springer, 95-102.

Hopp, Ann-Katrin; Hottiger, Michael O (2021). Investigation of Mitochondrial Via Immunofluorescence. In: Weissig, V; Edeas, M. Mitochondiral Medicine. New York: Springer, 165-171.

Du, Ngoc-Hien; Brown, Steven A (2021). Measuring Circadian Rhythms in Human Cells. In: Brown, Steven A. Circadian Clocks : Methods and Protocols. New York: Springer, 53-67.

Dimitrov, Bianca; Molema, Femke; Williams, Monique; Schmiesing, Jessica; Mühlhausen, Chris; Baumgartner, Matthias R; Schumann, Anke; Kölker, Stefan (2021). Organic acidurias: Major gaps, new challenges, and a yet unfulfilled promise. Journal of Inherited Metabolic Disease, 44(1):9-21.

Gysin, Tina; Kowalewski, Mariusz P (2021). The involvement of hypoxia-inducible factor 1α (HIF1α)-stabilising factors in steroidogenic acute regulatory (STAR) protein-dependent steroidogenesis in murine KK1 granulosa cells in vitro. Reproduction, Fertility and Development, 33(18):865-880.

Salzmann, Andrea Patrizia; Bamberg, Malte; Courts, Cornelius; Dorum, Guro; Gosch, Annica; Hadrys, Thorsten; Hadzic, Gavrilo; Neis, Maximilian; Schneider, Peter M; Sijen, Titia; van den Berge, Margreet; Wiegand, Peter; Haas, Cordula (2021). mRNA profiling of mock casework samples: Results of a FoRNAP collaborative exercise. Forensic Science International. Genetics, 50:102409.

Demange, Perline A; Malanchini, Margherita; Mallard, Travis T; Biroli, Pietro; Cox, Simon R; Grotzinger, Andrew D; Tucker-Drob, Elliot M; Abdellaoui, Abdel; Arseneault, Louise; van Bergen, Elsje; Boomsma, Dorret I; Caspi, Avshalom; Corcoran, David L; Domingue, Benjamin W; Harris, Kathleen Mullan; Ip, Hill F; Mitchell, Colter; Moffitt, Terrie E; Poulton, Richie; Prinz, Joseph A; Sugden, Karen; Wertz, Jasmin; Williams, Benjamin S; de Zeeuw, Eveline L; Belsky, Daniel W; Harden, K Paige; Nivard, Michel G (2021). Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction. Nature Genetics, 53(1):35-44.

Mun, YeVin; Nombela-Arrieta, César (2021). 3D Microscopy of Murine Bone Marrow Hematopoietic Tissues. Methods in Molecular Biology, 2308:127-138.

Gnoli, Maria; Brizola, Evelise; Tremosini, Morena; Pedrini, Elena; Maioli, Margherita; Mosca, Massimiliano; Bassotti, Alessandra; Castronovo, Paola; Giunta, Cecilia; Sangiorgi, Luca (2021). COL1-Related Disorders: Case Report and Review of Overlapping Syndromes. Frontiers in Genetics, 12:640558.

Pischedda, Sara; O’Connor, Daniel; Fairfax, Benjamin P; Salas, Antonio; Martinon-Torres, Federico; Pollard, Andrew J; Trück, Johannes (2021). Changes in epigenetic profiles throughout early childhood and their relationship to the response to pneumococcal vaccination. Clinical Epigenetics, 13:29.

Mujakić, Izabela; Andrei, Adrian-Stefan; Shabarova, Tanja; Fecskeová, Lívia Kolesár; Salcher, Michaela M; Piwosz, Kasia; Ghai, Rohit; Koblížek, Michal (2021). Common Presence of Phototrophic Gemmatimonadota in Temperate Freshwater Lakes. mSystems, 6(2):01241-20.

Lichtensteiger, Walter; Bassetti-Gaille, Catherine; Rehrauer, Hubert; Georgijevic, Jelena Kühn; Tresguerres, Jesus A F; Schlumpf, Margret (2021). Converging Effects of Three Different Endocrine Disrupters on Sox and Pou Gene Expression in Developing Rat Hippocampus: Possible Role of microRNA in Sex Differences. Frontiers in Genetics, 12:718796.

Stritt, Christoph; Roulin, Anne C (2021). Detecting Signatures of TE Polymorphisms in Short-Read Sequencing Data. In: Cho, Jungnam. Plant transposable elements. New York: Springer, 177-187.

Vasiljevic, Nina; Lim, Marisa; Humble, Emily; Seah, Adeline; Kratzer, Adelgunde; Morf, Nadja V; Prost, Stefan; Ogden, Rob (2021). Developmental validation of Oxford Nanopore Technology MinION sequence data and the NGSpeciesID bioinformatic pipeline for forensic genetic species identification. Forensic Science International. Genetics, 53:102493.

Cervantes-Gracia, Karla; Chahwan, Richard; Husi, Holger (2021). Integrative Analysis of Incongruous Cancer Genomics and Proteomics Datasets. Methods in Molecular Biology, 2361:291-305.

Schumann, Anke; Belche, Véronique; Schaller, Kristin; Grünert, Sarah C; Kaech, Andres; Baumgartner, Matthias R; Kölker, Stefan; Hannibal, Luciana; Spiekerkoetter, Ute (2021). Mitochondrial damage in renal epithelial cells is potentiated by protein exposure in propionic aciduria. Journal of Inherited Metabolic Disease, 44(6):1330-1342.

Lim, Pei Jin; Marfurt, Severin; Lindert, Uschi; Opitz, Lennart; Ndarugendamwo, Timothée; Srikanthan, Pakeerathan; Poms, Martin; Hersberger, Martin; Langhans, Claus-Dieter; Haas, Dorothea; Rohrbach, Marianne; Giunta, Cecilia (2021). Omics Profiling of S2P Mutant Fibroblasts as a Mean to Unravel the Pathomechanism and Molecular Signatures of X-Linked MBTPS2 Osteogenesis Imperfecta. Frontiers in Genetics, 12:662751.

2020

Amaral, Ana R; Chanfana, Cátia; Smith, Brian D; Mansur, Rubaiyat; Collins, Tim; Baldwin, Robert; Minton, Gianna; Parra, Guido J; Krützen, Michael; Jefferson, Thomas A; Karczmarski, Leszek; Guissamulo, Almeida; Brownell, Robert L; Rosenbaum, Howard C (2020). Genomics of Population Differentiation in Humpback Dolphins, Sousa spp. in the Indo-Pacific Ocean. Journal of Heredity, 111(7):652-660.

Marin-Gonzalez, Alberto; Aicart-Ramos, Clara; Marin-Baquero, Mikel; Martín-González, Alejandro; Suomalainen, Maarit; Kannan, Abhilash; Vilhena, J G; Greber, Urs F; Moreno-Herrero, Fernando; Pérez, Rubén (2020). Double-stranded RNA bending by AU-tract sequences. Nucleic Acids Research, 48(22):12917-12928.

Charmpi, Konstantina; Guo, Tiannan; Zhong, Qing; Wagner, Ulrich; Sun, Rui; Toussaint, Nora C; Fritz, Christine E; Yuan, Chunhui; Chen, Hao; Rupp, Niels J; Christiansen, Ailsa; Rutishauser, Dorothea; Rüschoff, Jan H; Fankhauser, Christian; Saba, Karim; Poyet, Cedric; Hermanns, Thomas; Oehl, Kathrin; Moore, Ariane L; Beisel, Christian; Calzone, Laurence; Martignetti, Loredana; Zhang, Qiushi; Zhu, Yi; Martínez, María Rodríguez; Manica, Matteo; Haffner, Michael C; Aebersold, Ruedi; Wild, Peter J; Beyer, Andreas (2020). Convergent network effects along the axis of gene expression during prostate cancer progression. Genome Biology, 21:302.

O'Reilly, Daniel; Crushell, Ellen; Hughes, Joanne; et al; Rüfenacht, Véronique; Häberle, Johannes (2020). Maple syrup urine disease: Clinical outcomes, metabolic control, and genotypes in a screened population after four decades of newborn bloodspot screening in the Republic of Ireland. Journal of Inherited Metabolic Disease, 44(3):639-655.

Huemer, Markus; Mairpady Shambat, Srikanth; Brugger, Silvio D; Zinkernagel, Annelies S (2020). Antibiotic resistance and persistence—Implications for human health and treatment perspectives. EMBO Reports, 21(12):0.

Tiberi, Simone; Robinson, Mark D (2020). BANDITS: Bayesian differential splicing accounting for sample-to-sample variability and mapping uncertainty. Genome Biology, 21:69.

Kartal, Önder; Schmid, Marc W; Grossniklaus, Ueli (2020). Cell type-specific genome scans of DNA methylation divergence indicate an important role for transposable elements. Genome Biology, 21:172.

Antoine, Daniel James; Williams, Dominic P; Kipar, Anja; Laverty, Hugh; Park, B Kevin (2020). Expression of Concern to: Diet restriction inhibits apoptosis and HMGB1 oxidation and promotes inflammatory cell recruitment during acetaminophen hepatoxicity. Molecular Medicine, 26:13.

Koenen, Erik J M; Kidner, Catherine; de Souza, Élvia R; Simon, Marcelo F; Iganci, João R; Nicholls, James A; Brown, Gillian K; de Queiroz, Luciano P; Luckow, Melissa; Lewis, Gwilym P; Pennington, R Toby; Hughes, Colin E (2020). Hybrid capture of 964 nuclear genes resolves evolutionary relationships in the mimosoid legumes and reveals the polytomous origins of a large pantropical radiation. American Journal of Botany, 107(12):1710-1735.

Fowler, Anna; Galson, Jacob D; Trück, Johannes; Kelly, Dominic F; Lunter, Gerton (2020). Inferring B cell specificity for vaccines using a Bayesian mixture model. BMC Genomics, 21:176.

Martens, Helge; Hennies, Imke; Getwan, Maike; Christians, Anne; Weiss, Anna-Carina; Brand, Frank; Gjerstad, Ann Christin; Christians, Arne; Gucev, Zoran; Geffers, Robert; Seeman, Tomáš; Kispert, Andreas; Tasic, Velibor; Bjerre, Anna; Lienkamp, Soeren Sten; Haffner, Dieter; Weber, Ruthild G (2020). Rare heterozygous GDF6 variants in patients with renal anomalies. European Journal of Human Genetics, 28(12):1681-1693.

Holderegger, Rolf; Schmidt, Benedikt R; Grünig, Christoph; Meier, Robert; Csencsics, Daniela; Gassner, Martin; Rellstab, Christian; Stapfer, André (2020). Ready-to-use workflows for the implementation of genetic tools in conservation management. Conservation Genetics Resources, 12(4):691-700.

Antoine, Daniel James; Williams, Dominic P; Kipar, Anja; Laverty, Hugh; Park, B Kevin (2020). Retraction Note: Diet restriction inhibits apoptosis and HMGB1 oxidation and promotes inflammatory cell recruitment during acetaminophen hepatotoxicity. Molecular Medicine, 26(1):130.

Thomas, Christoph; Aller, Stephen G; Beis, Konstantinos; Carpenter, Elisabeth P; et al; Martinoia, Enrico (2020). Structural and functional diversity calls for a new classification of ABC transporters. FEBS letters, 594(23):3767-3775.

Primo, Pasquale; Meccariello, Angela; Inghilterra, Maria Grazia; Gravina, Andrea; Del Corsano, Giuseppe; Volpe, Gennaro; Sollazzo, Germano; Aceto, Serena; Robinson, Mark D; Salvemini, Marco; Saccone, Giuseppe (2020). Targeting the autosomal Ceratitis capitata transformer gene using Cas9 or dCas9 to masculinize XX individuals without inducing mutations. BMC Genetics, 21(Suppl 2):150.

Feller, Anita; Matthes, Katarina L; Bordoni, Andrea; Bouchardy, Christine; Bulliard, Jean-Luc; Herrmann, Christian; Konzelmann, Isabelle; Maspoli, Manuela; Mousavi, Mohsen; Rohrmann, Sabine; Staehelin, Katharina; Arndt, Volker (2020). The relative risk of second primary cancers in Switzerland: a population-based retrospective cohort study. BMC Cancer, 20:51.

Hecht, Markus; Hahn, Dennis; Wolber, Philipp; Hautmann, Matthias G; Reichert, Dietmar; Weniger, Steffi; Belka, Claus; Bergmann, Tobias; Göhler, Thomas; Welslau, Manfred; Große-Thie, Christina; Guntinas-Lichius, Orlando; von der Grün, Jens; Balermpas, Panagiotis; Orlowski, Katrin; Messinger, Diethelm; Stenzel, Karsten G; Fietkau, Rainer (2020). Treatment response lowers tumor symptom burden in recurrent and/or metastatic head and neck cancer. BMC Cancer, 20(933):1-11.

Lopes, Patricia C; König, Barbara (2020). Wild mice with different social network sizes vary in brain gene expression. BMC Genomics, 21:506.

Germain, Pierre-Luc; Sonrel, Anthony; Robinson, Mark D (2020). pipeComp, a general framework for the evaluation of computational pipelines, reveals performant single cell RNA-seq preprocessing tools. Genome Biology, 21(1):227.

Caduff, Nicole; McHugh, Donal; Murer, Anita; Rämer, Patrick; Raykova, Ana; Landtwing, Vanessa; Rieble, Lisa; Keller, Christian W; Prummer, Michael; Hoffmann, Laurent; Lam, Janice K P; Chiang, Alan K S; Raulf, Friedrich; Azzi, Tarik; Berger, Christoph; Rubic-Schneider, Tina; Traggiai, Elisabetta; Lünemann, Jan D; Kammüller, Michael; Münz, Christian (2020). Correction: Immunosuppressive FK506 treatment leads to more frequent EBV-associated lymphoproliferative disease in humanized mice. PLoS Pathogens, 16(12):e1009167.

Giangiobbe, Sara; Caraffi, Stefano Giuseppe; Ivanovski, Ivan; Maini, Ilenia; Pollazzon, Marzia; et al (2020). Expanding the phenotype of Wiedemann-Steiner syndrome: Craniovertebral junction anomalies. American Journal of Medical Genetics. Part A, 182(12):2877-2886.

Roifman, Maian; Niles, Kirsten M; MacNeil, Lauren; Blaser, Susan; Noor, Abdul; Godoy, Ruth; van Mieghem, Tim; Ryan, Greg; Seaward, Gareth; Sondheimer, Neal; Mercimek-Andrews, Saadet; Schulze, Andreas; Hewson, Stacy; Ovadia, Adi; Chitayat, David; Morgen, Eric K; Hojilla, Carlo; Kolomietz, Elena; Watkins, Nicholas; Häberle, Johannes; Shannon, Patrick (2020). Homozygous GLUL deletion is embryonically viable and leads to glutamine synthetase deficiency. Clinical Genetics, 98(6):613-619.

San Roman, Magdalena; Wagner, Andreas (2020). Acetate and glycerol are not uniquely suited for the evolution of cross-feeding in E. coli. PLoS Computational Biology, 16(11):e1008433.

Bordignon, Enrica; Seeger, Markus A; Galazzo, Laura; Meier, Gianmarco (2020). From in vitro towards in situ: structure-based investigation of ABC exporters by electron paramagnetic resonance spectroscopy. FEBS letters, 594:3839-3856.

Buruck, Gabriele; Pfarr, Anna-Lisa; Penz, Marlene; Wekenborg, Magdalena K; Rothe, Nicole; Walther, Andreas (2020). The Influence of Workload and Work Flexibility on Work-Life Conflict and the Role of Emotional Exhaustion. Behavioral Sciences, 10(11):174.

Wambui, Joseph; Cernela, Nicole; Stevens, Marc J A; Ghielmetti, Giovanni; Stephan, Roger (2020). Draft genome sequences of two clostridium algidicarnis strains isolated from meat juice samples of chilled vacuum-packed lamb meat. Microbiology Resource Announcements, 9(45):e00983-20.

Wyler, Michele; Stritt, Christoph; Walser, Jean-Claude; Baroux, Célia; Roulin, Anne C (2020). Impact of transposable elements on methylation and gene expression across natural accessions of Brachypodium distachyon. Genome Biology and Evolution, 12(11):1994-2001.

Sokolowska, Milena (2020). Outsmarting SARS-CoV-2 by empowering a decoy ACE2. Signal Transduction and Targeted Therapy, 5(1):260.

Gesemann, Matthias; Neuhauss, Stephan C F (2020). Selective Gene Loss of Visual and Olfactory Guanylyl Cyclase Genes Following the Two Rounds of Vertebrate-Specific Whole-Genome Duplications. Genome Biology and Evolution, 12(11):2153-2167.

Rellstab, Christian; Zoller, Stefan; Sailer, Christian; Tedder, Andrew; Gugerli, Felix; Shimizu, Kentaro K; Holderegger, Rolf; Widmer, Alex; Fischer, Martin C (2020). Genomic signatures of convergent adaptation to Alpine environments in three Brassicaceae species. Molecular Ecology, 29(22):4350-4365.

Picart-Picolo, Ariadna; Grob, Stefan; Picault, Nathalie; Franek, Michal; Llauro, Christel; Halter, Thierry; Maier, Tom R; Jobet, Edouard; Descombin, Julie; Zhang, Panpan; Paramasivan, Vijayapalani; Baum, Thomas J; Navarro, Lionel; Dvořáčková, Martina; Mirouze, Marie; Pontvianne, Frédéric (2020). Large tandem duplications affect gene expression, 3D organization, and plant–pathogen response. Genome Research, 30(11):1583-1592.

Epting, Daniel; Senaratne, Lokuliyange D S; Ott, Elisabeth; Holmgren, Asbjørn; Sumathipala, Dulika; et al; Lienkamp, Soeren Sten (2020). Loss of CBY1 results in a ciliopathy characterized by features of Joubert syndrome. Human Mutation, 41(12):2179-2194.

Boccia, Lavinia; Le Foll, Christelle; Lutz, Thomas A (2020). Noradrenaline signaling in the LPBN mediates amylin's and salmon calcitonin's hypophagic effect in male rats. FASEB Journal, 34(11):15448-15461.

Koch, Eva L; Sbilordo, Sonja H; Guillaume, Frédéric (2020). Genetic variance in fitness and its cross-sex covariance predict adaptation during experimental evolution. Evolution, 74(12):2725-2740.

Wyvekens, Nicolas; Valtcheva, Nadejda; Mischo, Axel; Helmchen, Birgit; Hermanns, Thomas; Choschzick, Matthias; Hötker, Andreas M; Rauch, Anita; Mühleisen, Beda; Akhoundova, Dilara; Weber, Achim; Moch, Holger; Rupp, Niels J (2020). Novel morphological and genetic features of fumarate hydratase deficient renal cell carcinoma in HLRCC syndrome patients with a tailored therapeutic approach. Genes, Chromosomes and Cancer, 59(11):611-619.

Schmutzer, Michael; Wagner, Andreas (2020). Gene expression noise can promote the fixation of beneficial mutations in fluctuating environments. PLoS Computational Biology, 16(10):e1007727.

Lewinson, Oded; Orelle, Cédric; Seeger, Markus A (2020). Structures of ABC transporters: handle with care. FEBS letters, 594(23):3799-3814.

Arzate-Mejía, Rodrigo G; Lottenbach, Zuzanna; Schindler, Vincent; Jawaid, Ali; Mansuy, Isabelle M (2020). Long-Term Impact of Social Isolation and Molecular Underpinnings. Frontiers in Genetics, 11:589621.

Wambui, Joseph; Cernela, Nicole; Stevens, Marc J A; Corti, Sabrina; Stephan, Roger (2020). Draft genome sequences of two phylogenetically distinct clostridium gasigenes strains, CM001 and CM004, isolated from chilled vacuum-packed meat. Microbiology Resource Announcements, 9(42):e01128-20.

Sun, Jianqiang; Shimizu-Inatsugi, Rie; Hofhuis, Hugo; Shimizu, Kentaro; Hay, Angela; Shimizu, Kentaro K; Sese, Jun (2020). A Recently Formed Triploid Cardamine insueta Inherits Leaf Vivipary and Submergence Tolerance Traits of Parents. Frontiers in Genetics, 11:567262.

Koch, Eva L; Guillaume, Frederic (2020). Restoring ancestral phenotypes is a general pattern in gene expression evolution during adaptation to new environments in Tribolium castaneum. Molecular Ecology, 29(20):3938-3953.

Kottwitz, Jan; Bruno, Katelyn A; Berg, Jan; Salomon, Gary R; Fairweather, DeLisa; Elhassan, Mawahib; Baltensperger, Nora; Kissel, Christine K; Lovrinovic, Marina; Baltensweiler, Andrea; Schmied, Christian; Templin, Christian; Lima, Joao A C; Landmesser, Ulf; Lüscher, Thomas F; Manka, Robert; Heidecker, Bettina (2020). Myoglobin for Detection of High-Risk Patients with Acute Myocarditis. Journal of Cardiovascular Translational Research, 13(5):853-863.

Henco, Lara; Diaconescu, Andreea O; Lahnakoski, Juha M; Brandi, Marie-Luise; Hörmann, Sophia; Hennings, Johannes; Hasan, Alkomiet; Papazova, Irina; Strube, Wolfgang; Bolis, Dimitris; Schilbach, Leonhard; Mathys, Christoph (2020). Aberrant computational mechanisms of social learning and decision-making in schizophrenia and borderline personality disorder. PLoS Computational Biology, 16(9):e1008162.

Paape, Timothy; Akiyama, Reiko; Cereghetti, Teo; Onda, Yoshihiko; Hirao, Akira S; Kenta, Tanaka; Shimizu, Kentaro K (2020). Experimental and Field Data Support Range Expansion in an Allopolyploid Arabidopsis Owing to Parental Legacy of Heavy Metal Hyperaccumulation. Frontiers in Genetics, 11:1162.

Winkler, Johannes; Lukovic, Dominika; Mester-Tonczar, Julia; Zlabinger, Katrin; Gugerell, Alfred; Pavo, Noemi; Jakab, András; Szankai, Zsuzsanna; Traxler, Denise; Müller, Claudia; Spannbauer, Andreas; Riesenhuber, Martin; Hašimbegović, Ena; Dawkins, James; Zimmermann, Matthias; Ankersmit, Hendrik J; Marbán, Eduardo; Gyöngyösi, Mariann (2020). Quantitative hybrid cardiac [18F] FDG-PET-MRI images for assessment of cardiac repair by preconditioned cardiosphere-derived cells. Molecular Therapy - Methods & Clinical Development, 18:354-366.

Giger, Sonja; Kovtonyuk, Larisa V; Utz, Sebastian G; Ramosaj, Mergim; Kovacs, Werner J; Schmid, Emanuel; Ioannidis, Vassilios; Greter, Melanie; Manz, Markus G; Lutolf, Matthias P; Jessberger, Sebastian; Knobloch, Marlen (2020). A single metabolite which modulates lipid metabolism alters hematopoietic stem/progenitor cell behavior and promotes lymphoid reconstitution. Stem Cell Reports, 15(3):566-576.

Van Nguyen, Scott; Muthappa, Dechamma Mundanda; Eshwar, Athmanya K; Buckley, James F; Murphy, Brenda P; Stephan, Roger; Lehner, Angelika; Fanning, Séamus (2020). Comparative genomic insights into Yersinia hibernica – a commonly misidentified Yersinia enterocolitica-like organism. Microbial genomics, 6(9):mgen000411.

Kapun, Martin; Barrón, Maite G; Staubach, Fabian; Obbard, Darren J; Wiberg, R Axel W; Vieira, Jorge; Goubert, Clément; Rota-Stabelli, Omar; Kankare, Maaria; Bogaerts-Márquez, María; Haudry, Annabelle; Waidele, Lena; Kozeretska, Iryna; Pasyukova, Elena G; Loeschcke, Volker; Pascual, Marta; Vieira, Cristina P; Serga, Svitlana; Montchamp-Moreau, Catherine; Abbott, Jessica; Gibert, Patricia; Porcelli, Damiano; Posnien, Nico; Sánchez-Gracia, Alejandro; Grath, Sonja; Sucena, Élio; Bergland, Alan O; Guerreiro, Maria Pilar Garcia; Onder, Banu Sebnem; Argyridou, Eliza (2020). Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses. Molecular Biology and Evolution, 37(9):2661-2678.

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Gao, Bo; Baudis, Michael (2020). Minimum error calibration and normalization for genomic copy number analysis. Genomics, 112(5):3331-3341.

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Ringel, Till; Frey, Nina; Ringnalda, Femke; Janjuha, Sharan; Cherkaoui, Sarah; Butz, Stefan; Srivatsa, Sumana; Pirkl, Martin; Russo, Giancarlo; Villiger, Lukas; Rogler, Gerhard; Clevers, Hans; Beerenwinkel, Niko; Zamboni, Nicola; Baubec, Tuncay; Schwank, Gerald (2020). Genome-scale CRISPR screening in human intestinal organoids identifies drivers of TGF-β resistance. Cell Stem Cell, 26(3):431-440.e8.

Kim, Bong-Sung; Tilstam, Pathricia V; Arnke, Kevin; Leng, Lin; Ruhl, Tim; Piecychna, Marta; Schulte, Wibke; Sauler, Maor; Frueh, Florian S; Storti, Gabriele; Lindenblatt, Nicole; Giovanoli, Pietro; Pallua, Norbert; Bernhagen, Jürgen; Bucala, Richard (2020). Differential regulation of macrophage activation by the MIF cytokine superfamily members MIF and MIF-2 in adipose tissue during endotoxemia. FASEB Journal, 34(3):4219-4233.

Diop, Seydina I; Subotic, Oliver; Giraldo‐Fonseca, Alejandro; Waller, Manuel; Kirbis, Alexander; Neubauer, Anna; Potente, Giacomo; Murray‐Watson, Rachel; Boskovic, Filip; Bont, Zoe; Hock, Zsofia; Payton, Adam C; Duijsings, Daniël; Pirovano, Walter; Conti, Elena; Grossniklaus, Ueli; McDaniel, Stuart F; Szövényi, Péter (2020). A pseudomolecule‐scale genome assembly of the liverwort Marchantia polymorpha. The Plant Journal, 101(6):1378-1396.

Ingold, Sabrina; Dørum, Guro; Hanson, Erin K; Ballard, David; Berti, Andrea; Gettings, Katherine Butler; Giangasparo, Federica; Kampmann, Marie-Louise; Laurent, François Xavier; Morling, Niels; Parson, Walther; Steffen, Carolyn R; Ulus, A; van den Berge, Margreet; van der Gaag, Kristian J; Verdoliva, Vincenzo; Xavier, Catarina; Ballantyne, J; Haas, Cordula (2020). Body fluid identification and assignment to donors using a targeted mRNA massively parallel sequencing approach – results of a second EUROFORGEN / EDNAP collaborative exercise. Forensic Science International. Genetics, 45:102208.

Morlino, Silvia; Micale, Lucia; Ritelli, Marco; Rohrbach, Marianne; Zoppi, Nicoletta; Vandersteen, Anthony; Mackay, Sara; Agolini, Emanuele; Cocciadiferro, Dario; Sasaki, Erina; Madeo, Annalisa; Ferraris, Alessandro; Reardon, Willie; Di Rocco, Maja; Novelli, Antonio; Grammatico, Paola; Malfait, Fransiska; Mazza, Tommaso; Hakim, Alan; Giunta, Cecilia; Colombi, Marina; Castori, Marco (2020). COL1‐related overlap disorder: A novel connective tissue disorder incorporating the osteogenesis imperfecta/Ehlers‐Danlos syndrome overlap. Clinical Genetics, 97(3):396-406.

Wyder, Stefan; Rivera, Alejandro; Valdés, Ana E; Cañal, María Jesús; Gagliardini, Valeria; Fernández, Helena; Grossniklaus, Ueli (2020). Differential gene expression profiling of one- and two-dimensional apogamous gametophytes of the fern Dryopteris affinis ssp. affinis. Plant Physiology and Biochemistry, 148:302-311.

Poretti, Manuel; Praz, Coraline Rosalie; Meile, Lukas; Kälin, Carol; Schaefer, Luisa Katharina; Schläfli, Michael; Widrig, Victoria; Sanchez-Vallet, Andrea; Wicker, Thomas; Bourras, Salim (2020). Domestication of high-copy transposons underlays the wheat small RNA response to an obligate pathogen. Molecular Biology and Evolution, 37(3):839-848.

Moerman, Felix; Arquint, Angelina; Merkli, Stefanie; Wagner, Andreas; Altermatt, Florian; Fronhofer, Emanuel A (2020). Evolution under pH stress and high population densities leads to increased density‐dependent fitness in the protist Tetrahymena thermophila. Evolution, 74(3):573-586.

Nowak, Albina; Huynh-Do, Uyen; Krayenbuehl, Pierre-Alexandre; Beuschlein, Felix; Schiffmann, Raphael; Barbey, Frédéric (2020). Fabry disease genotype, phenotype and migalastat amenability: insights from a national cohort. Journal of Inherited Metabolic Disease, 43(2):326-333.

Wilson, Anthony B; Wegmann, Alexandra; Ahnesjö, Ingrid; Gonçalves, Jorge M S (2020). The evolution of ecological specialization across the range of a broadly distributed marine species. Evolution, 74(3):629-643.

Evers, Roeland A F; van Wegberg, Annemiek M J; Anjema, Karen; Lubout, Charlotte M A; van Dam, Esther; van Vliet, Danique; Blau, Nenad; van Spronsen, Francjan J (2020). The first European guidelines on phenylketonuria: Usefulness and implications for BH 4 responsiveness testing. Journal of Inherited Metabolic Disease, 43(2):244-250.

Deng, Ting; Stempor, Przemyslaw; Appert, Alex; Daube, Michael; Ahringer, Julie; Hajnal, Alex; Lattmann, Evelyn (2020). The Caenorhabditis elegans homolog of the Evi1 proto-oncogene, egl-43, coordinates G1 cell cycle arrest with pro-invasive gene expression during anchor cell invasion. PLoS Genetics, 16(3):e1008470.

Zapatka, Marc; Borozan, Ivan; Brewer, Daniel S; Iskar, Murat; Grundhoff, Adam; Alawi, Malik; Desai, Nikita; Sültmann, Holger; Moch, Holger; PCAWG Pathogens; Cooper, Colin S; Eils, Roland; Ferretti, Vincent; Lichter, Peter; PCAWG Consortium (2020). The landscape of viral associations in human cancers. Nature Genetics, 52(3):320-330.

Gsell, Corina; Richly, Holger; Coin, Frédéric; Naegeli, Hanspeter (2020). A chromatin scaffold for DNA damage recognition: how histone methyltransferases prime nucleosomes for repair of ultraviolet light-induced lesions. Nucleic Acids Research, 48(4):1652-1668.

Werren, Sarah; Barlevy, Dorit; Ravitsky, Vardit (2020). Posthumous Planning for Cryopreserved Biological Materials of Adolescent Cancer Patients. New Genetics and Society, 39(3):271-287.

Gascho, Dominic; Marosi, Mária; Thali, Michael J; Deininger‐Czermak, Eva (2020). Postmortem computed tomography and magnetic resonance imaging of gunshot wounds to the neck. Journal of Forensic Sciences, 65(4):1360-1364.

Cernikova, Lenka; Faso, Carmen; Hehl, Adrian B (2020). Phosphoinositide-binding proteins mark, shape and functionally modulate highly-diverged endocytic compartments in the parasitic protist Giardia lamblia. PLoS Pathogens, 16(2):e1008317.

Andrs, Martin; Hasanova, Zdenka; Oravetzova, Anna; Dobrovolna, Jana; Janscak, Pavel (2020). RECQ5: A Mysterious Helicase at the Interface of DNA Replication and Transcription. Genes, 11(2):232.

Voith von Voithenberg, Lena; Fomitcheva Khartchenko, Anna; Huber, Deborah; Schraml, Peter; Kaigala, Govind V (2020). Spatially multiplexed RNA in situ hybridization to reveal tumor heterogeneity. Nucleic Acids Research, 48(3):e17-e17.

Kovaltsuk, Aleksandr; Raybould, Matthew I J; Wong, Wing Ki; Marks, Claire; Kelm, Sebastian; Snowden, James; Trück, Johannes; Deane, Charlotte M (2020). Structural diversity of B-cell receptor repertoires along the B-cell differentiation axis in humans and mice. PLoS Computational Biology, 16(2):e1007636.

Letko, A; Ammann, B; Jagannathan, V; Henkel, J; Leuthard, F; Schelling, Claude; Carneiro, M; Drögemüller, C; Leeb, Tosso (2020). A deletion spanning the promoter and first exon of the hair cycle‐specific ASIP transcript isoform in black and tan rabbits. Animal Genetics, 51(1):137-140.

Denninger, T M; Schwarm, A; Dohme-Meier, F; Münger, A; Bapst, B; Wegmann, S; Grandl, F; Vanlierde, A; Sorg, D; Ortmann, S; Clauss, Marcus; Kreuzer, Michael (2020). Accuracy of methane emissions predicted from milk mid-infrared spectra and measured by laser methane detectors in Brown Swiss dairy cows. Journal of Dairy Science, 103(2):2024-2039.

Komarynets, Olga; Chassot, Alexandra; Bernabeu, Eva; Czogalla, Jan; Roth, Isabelle; Liaudet, Nicolas; Prodon, François; Loffing, Johannes; Feraille, Eric (2020). Aldosterone controls primary cilium length and cell size in renal collecting duct principal cells. FASEB Journal, 34(2):2625-2640.

Marazza, Alessandro; Galli, Carmela; Fasana, Elisa; Sgrignani, Jacopo; Burda, Patricie; Fassi, Enrico M A; Baumgartner, Matthias; Cavalli, Andrea; Molinari, Maurizio (2020). Endoplasmic Reticulum and Lysosomal Quality Control of Four Nonsense Mutants of Iduronate 2-Sulfatase Linked to Hunter's Syndrome. DNA and cell biology, 39(2):226-234.

Baur, Julian; Giesen, Athene; Rohner, Patrick T; Blanckenhorn, Wolf U; Schäfer, Martin A (2020). Exaggerated male forelegs are not more differentiated than wing morphology in two widespread sister species of black scavenger flies. Journal of Zoological Systematics and Evolutionary Research, 58(1):159-173.

Oliveira, João P; Nowak, Albina; Barbey, Frédéric; Torres, Márcia; Nunes, José P; Teixeira-E-Costa, Fernando; Carvalho, Fernanda; Sampaio, Susana; Tavares, Isabel; Pereira, Odete; Soares, Ana L; Carmona, Cátia; Cardoso, Maria-Teresa; Jurca-Simina, Iulia E; Spada, Marco; Ferreira, Susana; Germain, Dominique P (2020). Fabry disease caused by the GLA p.Phe113Leu (p.F113L) variant: Natural history in males. European Journal of Medical Genetics, 63(2):103703.

Sulser, Pascale; Pickel, Christina; Günter, Julia; Leissing, Thomas M; Crean, Daniel; Schofield, Christopher J; Wenger, Roland H; Scholz, Carsten C (2020). HIF hydroxylase inhibitors decrease cellular oxygen consumption depending on their selectivity. FASEB Journal, 34(2):2344-2358.

Aubry, Sylvain; Fankhauser, Niklaus; Ovinnikov, Serguei; Pružinská, Adriana; Stirnemann, Marina; Zienkiewicz, Krzysztof; Herrfurth, Cornelia; Feussner, Ivo; Hörtensteiner, Stefan (2020). Pheophorbide a may regulate Jasmonate signaling during dark-induced senescence. Plant Physiology, 182(2):776-791.

Dizin, Eva; Olivier, Valérie; Maire, Charline; Komarynets, Olga; Sassi, Ali; Roth, Isabelle; Loffing, Johannes; de Seigneux, Sophie; Maillard, Marc; Rutkowski, Joseph M; Edwards, Aurélie; Feraille, Eric (2020). Time‐course of sodium transport along the nephron in nephrotic syndrome: the role of potassium. FASEB Journal, 34(2):2408-2424.

Lang, Brian M; Kuipers, Jack; Misselwitz, Benjamin; Beerenwinkel, Niko (2020). Predicting colorectal cancer risk from adenoma detection via a two-type branching process model. PLoS Computational Biology, 16(2):e1007552.

Lausch, C K; Lorch, A; Giertzuch, S; Rieger, A; Knubben-Schweizer, Gabriela; Trefz, F M (2020). Prognostic relevance of pre- and postoperative plasma l-lactate measurements in calves with acute abdominal emergencies. Journal of Dairy Science, 103(2):1856-1865.

Bicker, Anne; Nauth, Theresa; Gerst, Daniela; Aboouf, Mostafa Ahmed; Fandrey, Joachim; Kristiansen, Glen; Gorr, Thomas A; Hankeln, Thomas (2020). The role of myoglobin in epithelial cancers: Insights from transcriptomics. International journal of molecular medicine, 45(2):385-400.

Klee, Katrin; Storti, Federica; Maggi, Jordi; Todorova, Vyara; Karademir, Duygu; Berger, Wolfgang; Samardzija, Marijana; Grimm, Christian (2020). The expression of Decidual Protein induced by Progesterone (DEPP) is controlled by three distal consensus Hypoxia Responsive Element (HRE) in Hypoxic Retinal Epithelial cells. Genes, 11(1):E111.

Agarwal, P; Isringhausen, S; Li, H; Paterson, A J; He, J; Gomariz, Á; Nagasawa, T; Nombela-Arrieta, C; Bhatia, R (2020). Erratum: Mesenchymal Niche-Specific Expression of Cxcl12 Controls Quiescence of Treatment-Resistant Leukemia Stem Cells (Cell Stem Cell (2019) 24(5) (769–784.e6), (S1934590919300700), (10.1016/j.stem.2019.02.018)). Cell Stem Cell, 26(1):123.

Ismail, Sascha A; Kokko, Hanna (2020). An analysis of mating biases in trees. Molecular Ecology, 29(1):184-198.

Lutz, Thomas A (2020). An overview of rodent models of obesity and Type 2 diabetes. In: King, Aileen J F. Animal Models of Diabetes. New York: Springer, 11-24.

Pagella, Pierfrancesco; Mitsiadis, Thimios A (2020). Analysis of Tooth Innervation in Microfluidic Coculture Devices. In: Kioussi, Chrissa. Stem Cells and Tissue : Repair Methods and Protocols. New York: Springer, 99-106.

Atac, David; Koller, Samuel; Hanson, James V M; Feil, Silke; Tiwari, Amit; Bahr, Angela; Baehr, Luzy; Magyar, István; Kottke, Raimund; Gerth-Kahlert, Christina; Berger, Wolfgang (2020). Atonal homolog 7 (ATOH7) loss-of-function mutations in predominant bilateral optic nerve hypoplasia. Human Molecular Genetics, 29(1):132-148.

Esposito, Giulia; Raffrenato, Emiliano; Lukamba, Somwe D; Adnane, Mounir; Irons, Pete C; Cormican, Paul; Tasara, Taurai; Chapwanya, Aspinas (2020). Characterization of metabolic and inflammatory profiles of transition dairy cows fed an energy-restricted diet. Journal of Animal Science, 98(1):skz391.

Zelger-Paulus, Susann; Hadzic, Mélodie C A S; Sigel, Roland K O; Börner, Richard (2020). Encapsulation of Fluorescently Labeled RNAs into Surface-Tethered Vesicles for Single-Molecule FRET Studies in TIRF Microscopy. In: Arluison, Véronique; Wien, Frank. RNA Spectroscopy. New York: Springer, 1-16.

Fang, Bohao; Merilä, Juha; Matschiner, Michael; Momigliano, Paolo (2020). Estimating uncertainty in divergence times among three-spined stickleback clades using the multispecies coalescent. Molecular Phylogenetics and Evolution, 142:106646.

Sutter, Sereina O; Marconi, Peggy; Meier, Anita F (2020). Herpes simplex virus growth, preparation, and assay. In: Diefenbach, Russell J; Fraefel, Cornel. Herpes Simplex Virus. Totowa, NJ: Springer, 57-72.

Florez-Rueda, Ana Marcela; Waser, Lucas; Grossniklaus, Ueli (2020). Laser-assisted microdissection of plant embryos for transcriptional profiling. In: Bayer, Martin. Plant Embryogenesis : Methods and Protocols. Humana Press, New York: Springer, 127-139.

Bell, David; Lin, Qianshi; Gerelle, Wesley K; Joya, Steve; Chang, Ying; Taylor, Z Nathan; Rothfels, Carl J; Larsson, Anders; Villarreal, Juan Carlos; Li, Fay‐Wei; Pokorny, Lisa; Szövényi, Péter; Crandall‐Stotler, Barbara; DeGironimo, Lisa; Floyd, Sandra K; Beerling, David J; Deyholos, Michael K; von Konrat, Matt; Ellis, Shona; Shaw, A Jonathan; Chen, Tao; Wong, Gane K‐S; Stevenson, Dennis W; Palmer, Jeffrey D; Graham, Sean W (2020). Organellomic data sets confirm a cryptic consensus on (unrooted) land‐plant relationships and provide new insights into bryophyte molecular evolution. American Journal of Botany, 107(1):91-115.

Alcântara-Neto, A S; Fernandez-Rufete, M; Corbin, E; Tsikis, G; Uzbekov, R; Garanina, A S; Coy, P; Almiñana, C; Mermillod, Pascal (2020). Oviduct fluid extracellular vesicles regulate polyspermy during porcine invitro fertilisation. Reproduction, Fertility and Development, 32(4):409.

Burri, Jan T; Munglani, Gautam; Nelson, Bradley J; Grossniklaus, Ueli; Vogler, Hannes (2020). Quantification of mechanical forces and physiological processes involved in pollen tube growth using microfluidics and microrobotics. In: Geitmann, Anja. Pollen and Pollen Tube Biology : Methods and Protocols. Humana, New York: Springer, 275-292.

Zhao, Meng; Börner, Richard; Sigel, Roland K O; Freisinger, Eva (2020). Site-Specific Dual-Color Labeling of Long RNAs. In: Heise, Tilman. RNA Chaperones. New York: Springer, 253-270.

Hu, Xueyun; Jia, Ting; Hörtensteiner, Stefan; Tanaka, Ayumi; Tanaka, Ryouichi (2020). Subcellular localization of chlorophyllase2 reveals it is not involved in chlorophyll degradation during senescence in Arabidopsis thaliana. Plant Science, 290:110314.

Demurtas, Olivia Costantina; de Brito Francisco, Rita; Martinoia, Enrico; Giuliano, Giovanni (2020). Transportomics for the characterization of plant apocarotenoid transmembrane transporters. In: Rodríguez-Concepción, Manuel; Welsch, Ralf. Plant and Food Carotenoids. Clifton, USA: Springer, 89-99.

Suzuki, Daisuke; Flahou, Charlotte; Yoshikawa, Norihide; Stirblyte, Ieva; Hayashi, Yoshikazu; Sawaguchi, Akira; Akasaka, Marina; Nakamura, Sou; Higashi, Natsumi; Xu, Huaigeng; Matsumoto, Takuya; Fujio, Kosuke; Manz, Markus G; Hotta, Akitsu; Takizawa, Hitoshi; Eto, Koji; Sugimoto, Naoshi (2020). iPSC-Derived Platelets Depleted of HLA Class I Are Inert to Anti-HLA Class I and Natural Killer Cell Immunity. Stem Cell Reports, 14(1):49-59.

Bachmann-Gagescu, Ruxandra; Dempsey, Jennifer C; Bulgheroni, Sara; Chen, Maida L; D'Arrigo, Stefano; Glass, Ian A; Heller, Theo; Héon, Elise; Hildebrandt, Friedhelm; Joshi, Nirmal; Knutzen, Dana; Kroes, Hester Y; Mack, Stephen H; Nuovo, Sara; Parisi, Melissa A; Snow, Joseph; Summers, Angela C; Symons, Jordan M; Zein, Wadih M; Boltshauser, Eugen; Sayer, John A; Gunay-Aygun, Meral; Valente, Enza Maria; Doherty, Dan (2020). Healthcare recommendations for Joubert syndrome. American Journal of Medical Genetics. Part A, 182(1):229-249.

Doykov, Ivan D; Heywood, Wendy E; Nikolaenko, Valeria; Śpiewak, Justyna; Hällqvist, Jenny; Clayton, Peter Theodore; Mills, Philippa; Warnock, David G; Nowak, Albina; Mills, Kevin (2020). Rapid, proteomic urine assay for monitoring progressive organ disease in Fabry disease. Journal of Medical Genetics, 57(1):38-47.

Richards, Daelyn Y; Winn, Shelley R; Dudley, Sandra; Fedorov, Lev; Rimann, Nicole; Thöny, Beat; Harding, Cary O (2020). A novel Pah-exon1 deleted murine model of phenylalanine hydroxylase (PAH) deficiency. Molecular Genetics and Metabolism, 131(3):306-315.

Agca, Cavit; Grimm, Christian (2020). A simple guide for generating BAC transgenic animals for retinal research. Methods in Molecular Biology, 2092:109-122.

Bidla, Gawa; Watkins, David; Chéry, Céline; Froese, D. Sean; Ells, Courtney; Kerachian, Matin; Saskin, Avi; Christensen, Karen E; Gilfix, Brian M; Guéant, Jean-Louis; Rosenblatt, David S (2020). Biochemical analysis of patients with mutations in MTHFD1 and a diagnosis of methylenetetrahydrofolate dehydrogenase 1 deficiency. Molecular Genetics and Metabolism, 130(3):179-182.

Kuhn, Benedikt T; Zimmermann, Iwan; Egloff, Pascal; Hürlimann, Lea M; Hutter, Cedric A J; Miscenic, Christian; Dawson, Roger J P; Seeger, Markus A; Geertsma, Eric R (2020). Biotinylation of Membrane Proteins for Binder Selections. In: Perez, Camilo; Maier, Timm. Expression, Purification, and Structural Biology of Membrane Proteins. Switzerland: Springer, 151-165.

Shaul, Merav E; Eyal, Ophir; Guglietta, Silvia; Aloni, Pazzit; Zlotnik, Asaf; Forkosh, Ester; Levy, Liran; Weber, Lukas M; Levin, Yonathan; Pomerantz, Alon; Nechushtan, Hovav; Eruslanov, Evgeniy; Singhal, Sunil; Robinson, Mark D; Krieg, Carsten; Fridlender, Zvi G (2020). Circulating neutrophil subsets in advanced lung cancer patients exhibit unique immune signature and relate to prognosis. FASEB Journal, 34(3):4204-4218.

Ayoub, Sandy; Ghali, Neeti; Angwin, Chloe; Baker, Duncan; Baffini, Stella; Brady, Angela F; Giovannucci Uzielli, Maria Luisa; Giunta, Cecilia; Johnson, Diana S; Kosho, Tomoki; Neas, Katherine; Pope, F Michael; Rutsch, Frank; Scarselli, Gloria; Sobey, Glenda; Vandersteen, Anthony; van Dijk, Fleur S (2020). Clinical features, molecular results, and management of 12 individuals with the rare arthrochalasia Ehlers‐Danlos syndrome. American Journal of Medical Genetics. Part A, 182(5):994-1007.

Oehus, Ann-Kathrin; Kroeze, Stephanie G C; Schmidt-Hegemann, Nina-Sophie; Vogel, Marco M E; Kirste, Simon; Becker, Jessica; Burger, Irene A; Derlin, Thorsten; Bartenstein, Peter; Eiber, Matthias; Mix, Michael; la Fougère, Christian; Belka, Claus; Combs, Stephanie E; Grosu, Anca-Ligia; Müller, Arndt-Christian; Guckenberger, Matthias; Christiansen, Hans; Henkenberens, Christoph (2020). Efficacy of PSMA ligand PET-based radiotherapy for recurrent prostate cancer after radical prostatectomy and salvage radiotherapy. BMC Cancer, 20:362.

Lähnemann, David; Köster, Johannes; Szczurek, Ewa; McCarthy, Davis J; Hicks, Stephanie C; Robinson, Mark D; et al (2020). Eleven grand challenges in single-cell data science. Genome Biology, 21:31.

Tsapara, Georgia; Andermatt, Irwin; Stoeckli, Esther T (2020). Gene Silencing in Chicken Brain Development. In: Sprecher, Simon G. Brain Development. Humana, New York, NY: Springer, 439-456.

Ludwig, Barbara; Wolf, Eckhard; Schönmann, Uwe; Ludwig, Stefan (2020). Large Animal Models of Diabetes. Methods in Molecular Biology, 2128:115-134.

Seyffert, Michael; Fraefel, Cornel (2020). Multifluorescence live analysis of herpes simplex virus type-1 replication. In: Diefenbach, Russel J; Fraefel, Cornel. Herpes Simplex Virus. Totowa, NJ: Springer, 365-376.

Wiedemann, Arnaud; Chery, Céline; Coelho, David; Flayac, Justine; Gueguen, Naïg; Desquiret-Dumas, Valérie; Feillet, François; Lavigne, Christian; Neau, Jean-Philippe; Fowler, Brian; Baumgartner, Matthias R; Reynier, Pascal; Guéant, Jean-Louis; Oussalah, Abderrahim (2020). Mutations in MTHFR and POLG impaired activity of the mitochondrial respiratory chain in 46-year-old twins with spastic paraparesis. Journal of Human Genetics, 65(2):91-98.

Kakui, Hiroyuki; Yamazaki, Misako; Hamaya, Naoto-Benjamin; Shimizu, Kentaro K (2020). Pollen Grain Counting Using a Cell Counter. In: Geitmann, Anja. Methods in Molecular Biology: Pollen and Pollen Tube Biology. Berlin: Springer, 1-11.

Haudry, A; Laurent, S; Kapun, Martin (2020). Population Genomics on the Fly: Recent Advances in Drosophila. In: Dutheil, Julien Y. Statistical Population Genomics. Basel: Springer, 357-396.

Gupta, Shivani; Santoro, Raffaella (2020). Regulation and Roles of the Nucleolus in Embryonic Stem Cells: From Ribosome Biogenesis to Genome Organization. Stem Cell Reports, 15(6):1206-1219.

Borrelli, Costanza; Moor, Andreas E (2020). Single-Molecule RNA FISH in Whole-Mount Organoids. In: Ordóñez-Morán, Paloma. Intestinal Stem Cells. Nottingham, UK: Springer, 237-247.

Hillert, Alicia; Anikster, Yair; Belanger-Quintana, Amaya; Burlina, Alberto; et al; Rohrbach, Marianne; Thöny, Beat; Blau, Nenad (2020). The Genetic Landscape and Epidemiology of Phenylketonuria. American Journal of Human Genetics, 107(2):234-250.

Najafi, Arash; Caspar, Sylvan M; Meienberg, Janine; Rohrbach, Marianne; Steinmann, Beat; Matyas, Gabor (2020). Variant filtering, digenic variants, and other challenges in clinical sequencing: a lesson from fibrillinopathies. Clinical Genetics, 97(2):235-245.

2019

Nur, Selim; Sparber, Florian; Lemberg, Christina; Guiducci, Eva; Schweizer, Tiziano A; Zwicky, Pascale; Becher, Burkhard; LeibundGut-Landmann, Salomé (2019). IL-23 supports host defense against systemic Candida albicans infection by ensuring myeloid cell survival. PLoS Pathogens, 15(12):e1008115.

Galindo‐Trigo, Sergio; Blanco‐Touriñán, Noel; DeFalco, Thomas A; Wells, Eloise S; Gray, Julie E; Zipfel, Cyril; Smith, Lisa M (2019). Cr RLK 1L receptor‐like kinases HERK 1 and ANJEA are female determinants of pollen tube reception. EMBO Reports:e48466.

Noreen, Faiza; Küng, Taya; Tornillo, Luigi; Parker, Hannah; Silva, Miguel; Weis, Stefan; Marra, Giancarlo; Rad, Roland; Truninger, Kaspar; Schär, Primo (2019). DNA methylation instability by BRAF-mediated TET silencing and lifestyle-exposure divides colon cancer pathways. Clinical Epigenetics, 11:196.

Torrecilha, R B P; Milanesi, M; Gallana, M; Falbo, A K; Reichler, Iris M; Hug, P; Jagannathan, V; Trigo, B B; Paulan, S C; Bruno, D B; Garcia, S D; Scaramele, N F; Lopes, F L; Dolf, G; Leeb, T; Sölkner, J; Garcia, J F; Pienkowska‐Schelling, A; Schelling, Claude; Utsunomiya, Y T (2019). Association of missense variants in GDF9 with litter size in Entlebucher Mountain dogs. Animal Genetics, 51(1):78-86.

Walter, Jasmin; Huwiler, Fabian; Fortes, Claudia; Grossmann, Jonas; Roschitzki, Bernd; Hu, Junmin; Naegeli, Hanspeter; Laczko, Endre; Bleul, Ulrich (2019). Analysis of the equine “cumulome” reveals major metabolic aberrations after maturation in vitro. BMC Genomics, 20(1):588.

Hanson, Erin; Ingold, Sabrina; Dorum, Guro; Haas, Cordula; Lagace, Rob; Ballantyne, Jack (2019). Assigning forensic body fluids to DNA donors in mixed samples by targeted RNA/DNA deep seqeuncing of coding region SNPs using ion torrent technology. Forensic Science International: Genetics Supplement Series, 7(1):23-24.

Codilupi, Tamara; Taube, Doreen; Naegeli, Hanspeter (2019). CRL4 ubiquitin ligase stimulates Fanconi anemia pathway-induced single-stranded DNA-RPA signaling. BMC Cancer, 19(1):1042.

Begemann, Anaïs; Acuña, Mario A; Zweier, Markus; Vincent, Marie; Steindl, Katharina; Bachmann-Gagescu, Ruxandra; Hackenberg, Annette; Abela, Lucia; Plecko, Barbara; Kroell-Seger, Judith; Baumer, Alessandra; Yamakawa, Kazuhiro; Inoue, Yushi; Asadollahi, Reza; Sticht, Heinrich; Zeilhofer, Hanns Ulrich; Rauch, Anita (2019). Further corroboration of distinct functional features in SCN2A variants causing intellectual disability or epileptic phenotypes. Molecular Medicine, 25:6.

Jain, Rashmi; Jenkins, Jerry; Shu, Shengqiang; Chern, Mawsheng; Martin, Joel A; Copetti, Dario; Duong, Phat Q; Pham, Nikki T; Kudrna, David A; Talag, Jayson; Schackwitz, Wendy S; Lipzen, Anna M; Dilworth, David; Bauer, Diane; Grimwood, Jane; Nelson, Catherine R; Xing, Feng; Xie, Weibo; Barry, Kerrie W; Wing, Rod A; Schmutz, Jeremy; Li, Guotian; Ronald, Pamela C (2019). Genome sequence of the model rice variety KitaakeX. BMC Genomics, 20(1):905.

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