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Miraki, Mojdeh; Sohrabi, Hormoz; Fatehi, Parviz; Kneubühler, Mathias (2021). Individual tree crown delineation from high-resolution UAV images in broadleaf forest. Ecological Informatics, 61:101207.

Moura, Rita; Borges, Margarida; Vila Pouca, Maria C P; Oliveira, Dulce A; Parente, Marco P L; Kimmich, Nina; Mascarenhas, Teresa; Natal, Renato M (2021). A numerical study on fetal head molding during labor. International Journal for Numerical Methods in Biomedical Engineering, 37(1):e3411.


Stark, Stefan G; Ficek, Joanna; Locatello, Francesco; Bonilla, Ximena; Chevrier, Stéphane; Singer, Franziska; Tumor Profiler Consortium; Rätsch, Gunnar; Lehmann, Kjong-Van (2020). SCIM: universal single-cell matching with unpaired feature sets. Bioinformatics, 36(Supp.):i919-i927.

San Roman, Magdalena; Wagner, Andreas (2020). Acetate and glycerol are not uniquely suited for the evolution of cross-feeding in E. coli. PLoS Computational Biology, 16(11):e1008433.

Abgrall, Rémi; Nordström, Jan; Öffner, Philipp; Tokareva, Svetlana (2020). Analysis of the SBP-SAT stabilization for finite element methods part I: Linear problems. Journal of Scientific Computing, 85(2):43.

Schmutzer, Michael; Wagner, Andreas (2020). Gene expression noise can promote the fixation of beneficial mutations in fluctuating environments. PLoS Computational Biology, 16(10):e1007727.

Henco, Lara; Diaconescu, Andreea O; Lahnakoski, Juha M; Brandi, Marie-Luise; Hörmann, Sophia; Hennings, Johannes; Hasan, Alkomiet; Papazova, Irina; Strube, Wolfgang; Bolis, Dimitris; Schilbach, Leonhard; Mathys, Christoph (2020). Aberrant computational mechanisms of social learning and decision-making in schizophrenia and borderline personality disorder. PLoS Computational Biology, 16(9):e1008162.

Sinisi, Stefano; Alimguzhin, Vadim; Mancini, Toni; Tronci, Enrico; Mari, Federico; Leeners, Brigitte (2020). Optimal Personalised Treatment Computation through In Silico Clinical Trials on Patient Digital Twins. Fundamenta Informaticae, 174(3-4):283-310.

Schweizer, Gabriel; Wagner, Andreas (2020). Genotype networks of 80 quantitative Arabidopsis thaliana phenotypes reveal phenotypic evolvability despite pervasive epistasis. PLoS Computational Biology, 16(8):e1008082.

Sturrock, Peter; Scholkmann, Felix (2020). The RONO (Rank-Order-Normalization) Procedure for Power-Spectrum Analysis of Datasets with Non-Normal Distributions. Algorithms, 13(7):157.

Bouvel, Mathilde; Mishna, Marni; Nicaud, Cyril (2020). Some families of trees arising in permutation analysis. Electronic Journal of Combinatorics, 27(2):P2.20.

Fagerholm, Erik D; Foulkes, W M C; Gallero-Salas, Yasir; Helmchen, Fritjof; Friston, Karl J; Moran, Rosalyn J; Leech, Robert (2020). Conservation laws by virtue of scale symmetries in neural systems. PLoS Computational Biology, 16(5):e1007865.

Melenk, Jens Markus; Sauter, Stefan A (2020). Wavenumber-explicit hp-FEM analysis for Maxwell’s equations with transparent boundary conditions. Foundations of Computational Mathematics:online.

Albert, Michael; Bouvel, Mathilde; Féray, Valentin (2020). Two first-order logics of permutations. Journal of Combinatorial Theory, Series A, 171:105158.

Numminen, Elina; Laine, Anna-Liisa (2020). The spread of a wild plant pathogen is driven by the road network. PLoS Computational Biology, 16(3):e1007703.

Smakaj, Erand; Babrak, Lmar; Ohlin, Mats; Shugay, Mikhail; Briney, Bryan; Tosoni, Deniz; Galli, Christopher; Grobelsek, Vendi; D’Angelo, Igor; Olson, Branden; Reddy, Sai; Greiff, Victor; Trück, Johannes; Marquez, Susanna; Lees, William; Miho, Enkelejda (2020). Benchmarking immunoinformatic tools for the analysis of antibody repertoire sequences. Bioinformatics, 36(6):1731-1739.

Kovaltsuk, Aleksandr; Raybould, Matthew I J; Wong, Wing Ki; Marks, Claire; Kelm, Sebastian; Snowden, James; Trück, Johannes; Deane, Charlotte M (2020). Structural diversity of B-cell receptor repertoires along the B-cell differentiation axis in humans and mice. PLoS Computational Biology, 16(2):e1007636.

Hothorn, Torsten (2020). Transformation boosting machines. Statistics and Computing, 30(1):141-152.

Lang, Brian M; Kuipers, Jack; Misselwitz, Benjamin; Beerenwinkel, Niko (2020). Predicting colorectal cancer risk from adenoma detection via a two-type branching process model. PLoS Computational Biology, 16(2):e1007552.

O'Connor, Brian; Bojinski, Stephan; Röösli, Claudia; Schaepman, Michael E (2020). Monitoring global changes in biodiversity and climate essential as ecological crisis intensifies. Ecological Informatics, 55:101033.


Grosskurth, Elmar D; Bach, Dominik R; Economides, Marcos; Huys, Quentin J M; Holper, Lisa (2019). No substantial change in the balance between model-free and model-based control via training on the two-step task. PLoS Computational Biology, 15(11):e1007443.

Yu, Xiaoquan; Li, Xiang-Yi (2019). Applications of WKB and Fokker–Planck Methods in Analyzing Population Extinction Driven by Weak Demographic Fluctuations. Bulletin of Mathematical Biology, 81(11):4840-4855.

Schmid, Franca; Barrett, Matthew J P; Obrist, Dominik; Weber, Bruno; Jenny, Patrick (2019). Red blood cells stabilize flow in brain microvascular networks. PLoS Computational Biology, 15(8):e1007231.

Koppe, Georgia; Toutounji, Hazem; Kirsch, Peter; Lis, Stefanie; Durstewitz, Daniel (2019). Identifying nonlinear dynamical systems via generative recurrent neural networks with applications to fMRI. PLoS Computational Biology, 15(8):e1007263.

Laaber, Christoph (2019). Continuous Software Performance Assessment: Detecting Performance Problems of Software Libraries on Every Build. In: The 28th ACM SIGSOFT International Symposium on Software Testing and Analysis, Beijing, China, 15 August 2019 - 19 August 2019.

Moor, Dmitry (2019). Data markets with dynamic arrival of buyers and sellers. In: The 14th Workshop on the Economics of Networks, Systems and Computation, Phoenix, Arizona, 28 July 2019 - 28 July 2019, 1-6.

Libby, Eric; Hébert-Dufresne, Laurent; Hosseini, Sayed-Rzgar; Wagner, Andreas (2019). Syntrophy emerges spontaneously in complex metabolic systems. PLoS Computational Biology, 15(7):e1007169.

Grano, Giovanni (2019). A New Dimension of Test Quality: Assessing and Generating Higher Quality Unit Test Cases. In: Proceedings of the 28th ACM SIGSOFT International Symposium on Software Testing and Analysis, Beijing, 17 July 2019 - 20 July 2019, 419-423.

Abgrall, Rémi; Bacigaluppi, Paola; Tokareva, Svetlana (2019). High-order residual distribution scheme for the time-dependent Euler equations of fluid dynamics. Computers & Mathematics with Applications, 78(2):274-297.

Hauser, Anthony; Kusejko, Katharina; Johnson, Leigh F; Wandeler, Gilles; Riou, Julien; Goldstein, Fardo; Egger, Matthias; Kouyos, Roger D (2019). Bridging the gap between HIV epidemiology and antiretroviral resistance evolution: Modelling the spread of resistance in South Africa. PLoS Computational Biology, 15(6):e1007083.

Lin, Jianfang; Abgrall, Rémi; Qiu, Jianxian (2019). High order residual distribution for steady state problems for hyperbolic conservation laws. Journal of Scientific Computing, 79(2):891-913.

Solinas, Sergio M G; Edelmann, Elke; Leßmann, Volkmar; Migliore, Michele (2019). A kinetic model for Brain-Derived Neurotrophic Factor mediated spike timing-dependent LTP. PLoS Computational Biology, 15(4):e1006975.

Bouckaert, Remco; Vaughan, Timothy G; Barido-Sottani, Joëlle; Duchêne, Sebastián; Fourment, Mathieu; Gavryushkina, Alexandra; Heled, Joseph; Jones, Graham; Kühnert, Denise; De Maio, Nicola; Matschiner, Michael; Mendes, Fábio K; Müller, Nicola F; Ogilvie, Huw A; du Plessis, Louis; Popinga, Alex; Rambaut, Andrew; Rasmussen, David; Siveroni, Igor; Suchard, Marc A; Wu, Chieh-Hsi; Xie, Dong; Zhang, Chi; Stadler, Tanja; Drummond, Alexei J (2019). BEAST 2.5: An Advanced Software Platform for Bayesian Evolutionary Analysis. PLoS Computational Biology, 15(4):e1006650.

Heyard, Rachel; Held, Leonhard (2019). The quantile probability model. Computational Statistics & Data Analysis, 132:84-99.

Miladinović, Đorđe; Muheim, Christine; Bauer, Stefan; Spinnler, Andrea; Noain, Daniela; Bandarabadi, Mojtaba; Gallusser, Benjamin; Krummenacher, Gabriel; Baumann, Christian; Adamantidis, Antoine; Brown, Steven A; Buhmann, Joachim M (2019). SPINDLE: End-to-end learning from EEG/EMG to extrapolate animal sleep scoring across experimental settings, labs and species. PLoS Computational Biology, 15(4):e1006968.

Vinckier, Fabien; Rigoux, Lionel; Kurniawan, Irma T; Hu, Chen; Bourgeois-Gironde, Sacha; Daunizeau, Jean; Pessiglione, Mathias (2019). Sour grapes and sweet victories: How actions shape preferences. PLoS Computational Biology, 15:e1006499.


Kedzierska, Katarzyna Z; Gerber, Livia; Cagnazzi, Daniele; Krützen, Michael; Ratan, Aakrosh; Kistler, Logan (2018). SONiCS: PCR stutter noise correction in genome-scale microsatellites. Bioinformatics, 34(23):4115-4117.

Vassallo, Carmine; Palomba, Fabio; Bacchelli, Alberto; Gall, Harald C. (2018). Continuous code quality: are we (really) doing that? In: ASE '18: 33rd ACM/IEEE International Conference on Automated Software Engineering, Montpellier France, 3 October 2018 - 7 October 2018, 790-795.

Kovalenko, Vladimir; Palomba, Fabio; Bacchelli, Alberto (2018). Mining file histories: should we consider branches? In: ASE '18: 33rd ACM/IEEE International Conference on Automated Software Engineering, Montpellier France, 3 October 2018 - 7 October 2018, 202-213.

Scalabrino, Simone; Grano, Giovanni; Di Nucci, Dario; Guerra, Michele; De Lucia, Andrea; Gall, Harald C; Oliveto, Rocco (2018). OCELOT"" A Search-Based Test Data Generation Tool for C. In: Proceedings of the 33rd IEEE/ACM International Conference on Automated Software Engineering, Montpellier, France, 3 September 2018 - 7 September 2018.

Katthagen, Teresa; Mathys, Christoph; Deserno, Lorenz; Walter, Henrik; Kathmann, Norbert; Heinz, Andreas; Schlagenhauf, Florian (2018). Modeling subjective relevance in schizophrenia and its relation to aberrant salience. PLoS Computational Biology, 14(8):e1006319.

Tzovara, Athina; Korn, Christoph W; Bach, Dominik R (2018). Human Pavlovian fear conditioning conforms to probabilistic learning. PLoS Computational Biology, 14(8):e1006243.

San Roman, Magdalena; Wagner, Andreas (2018). An enormous potential for niche construction through bacterial cross-feeding in a homogeneous environment. PLoS Computational Biology, 14(7):e1006340.

Voita, Elena; Serdyukov, Pavel; Sennrich, Rico; Titov, Ivan (2018). Context-Aware Neural Machine Translation Learns Anaphora Resolution. In: Proceedings of the 56th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), Melbourne, 15 July 2018 - 20 July 2018, 1264-1274.

Muller, Lorenz K; Martel, Julien N P; Indiveri, Giacomo (2018). Kernelized Synaptic Weight Matrices. In: International Conference on Machine Learning 2018, Stockholm, 10 July 2018 - 15 July 2018, 3651-3660.

Schwab, Patrick; Keller, Emanuela; Muroi, Carl; Mack, David J; Strässle, Christian; Karlen, Walter (2018). Not to Cry Wolf: Distantly Supervised Multitask Learning in Critical Care. In: 35 th International Conference on Machine Learning, Stockholm, Sweden, 10 July 2018 - 15 July 2018.

Martin, Mike; Weibel, Robert; Röcke, Christina; Boker, Steven M (2018). Semantic Activity Analytics for Healthy Aging: Challenges and Opportunities. IEEE Pervasive Computing, 17(3):73-77.

Quaglino, A; Pezzuto, S; Koutsourelakis, P S; Auricchio, A; Krause, R (2018). Fast uncertainty quantification of activation sequences in patient-specific cardiac electrophysiology meeting clinical time constraints. International Journal for Numerical Methods in Biomedical Engineering, 34(7):e2985.

Radom, Filip; Plückthun, Andreas; Paci, Emanuele (2018). Assessment of ab initio models of protein complexes by molecular dynamics. PLoS Computational Biology, 14(6):e1006182.

Nguyen, Anh; Rothacher, Yannick; Lenggenhager, Bigna; Brugger, Peter; Kunz, Andreas (2018). Individual Differences and Impact of Gender on Curvature Redirection Thresholds. In: SAP, 18. Proceedings of the 15th ACM Symposium on Applied Perception. New York, NY, USA: ACM, 5:1-5:4.

Singer, Jochen; Ruscheweyh, Hans-Joachim; Hofmann, Ariane L; Thurnherr, Thomas; Singer, Franziska; Toussaint, Nora C; Ng, Charlotte K Y; Piscuoglio, Salvatore; Beisel, Christian; Christofori, Gerhard; Dummer, Reinhard; Hall, Michael N; Krek, Wilhelm; Levesque, Mitchell P; Manz, Markus G; Moch, Holger; Papassotiropoulos, Andreas; Stekhoven, Daniel J; Wild, Peter; Wüst, Thomas; Rinn, Bernd; Beerenwinkel, Niko (2018). NGS-pipe: a flexible, easily extendable, and highly configurable framework for NGS analysis. Bioinformatics, 34(1):107-108.

Soneson, Charlotte; Robinson, Mark D (2018). Towards unified quality verification of synthetic count data with countsimQC. Bioinformatics, 34(4):691-692.


Gallego, Guillermo; Lund, Jon E A; Müggler, Elias; Rebecq, Henri; Delbruck, Tobi; Scaramuzza, Davide (2017). Event-based, 6-DOF Camera Tracking from Photometric Depth Maps. IEEE Transactions on Pattern Analysis and Machine Intelligence, 1(1):1-10.

Muir, Dylan R; Molina-Luna, Patricia; Roth, Morgane M; Helmchen, Fritjof; Kampa, Björn M (2017). Specific excitatory connectivity for feature integration in mouse primary visual cortex. PLoS Computational Biology, 13(12):e1005888.

Ledoit, Olivier; Wolf, Michael (2017). Numerical implementation of the QuEST function. Computational Statistics & Data Analysis, 115:199-223.

Ashcroft, Peter; Manz, Markus G; Bonhoeffer, Sebastian (2017). Clonal dominance and transplantation dynamics in hematopoietic stem cell compartments. PLoS Computational Biology, 13(10):e1005803.

Kotelnikova, Ekaterina; Kiani, Narsis A; Abad, Elena; Martinez-Lapiscina, Elena H; Andorra, Magi; Zubizarreta, Irati; Pulido-Valdeolivas, Irene; Pertsovskaya, Inna; Alexopoulos, Leonidas G; Olsson, Tomas; Martin, Roland; Paul, Friedemann; Tegnér, Jesper; Garcia-Ojalvo, Jordi; Villoslada, Pablo (2017). Dynamics and heterogeneity of brain damage in multiple sclerosis. PLoS Computational Biology, 13(10):e1005757.

Abgrall, Rémi; Viville, Q; Beaugendre, H; Dobrzynski, C (2017). Construction of a p-adaptive continuous residual distribution scheme. Journal of Scientific Computing, 72(3):1232-1268.

Muff, Stefanie; Ott, Manuela; Braun, Julia; Held, Leonhard (2017). Bayesian two-component measurement error modelling for survival analysis using INLA—A case study on cardiovascular disease mortality in Switzerland. Computational Statistics & Data Analysis, 113:177-193.

Rodrigues, João F Matias; Schmidt, Thomas Sebastian Benedikt; Tackmann, Janko; von Mering, Christian (2017). MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis. Bioinformatics, 33(23):3808-3810.

Neil, D; Lee, J-H; Delbruck, T; Liu, S-C (2017). Delta networks for optimized recurrent network computation. In: 34th International Conference on Machine Learning 2017, Sydney, 6 August 2017 - 11 August 2017.

Abgrall, Rémi (2017). High order schemes for hyperbolic problems using globally continuous approximation and avoiding mass matrices. Journal of Scientific Computing, 73(2-3):461-494.

Hauser, Tobias U; Moutoussis, Michael; Iannaccone, Reto; Brem, Silvia; Walitza, Susanne; Drechsler, Renate; Dayan, Peter; Dolan, Raymond J (2017). Increased decision thresholds enhance information gathering performance in juvenile Obsessive-Compulsive Disorder (OCD). PLoS Computational Biology, 13(4):e1005440.

Gauvrit, Nicolas; Zenil, Hector; Soler-Toscano, Fernando; Delahaye, Jean-Paul; Brugger, Peter (2017). Human behavioral complexity peaks at age 25. PLoS Computational Biology, 13(4):e1005408.

Rasmussen, David A; Kouyos, Roger; Günthard, Huldrych F; Stadler, Tanja (2017). Phylodynamics on local sexual contact networks. PLoS Computational Biology, 13(3):e1005448.

Gorgolewski, Krzysztof J; Alfaro-Almagro, Fidel; Auer, Tibor; Bellec, Pierre; Capotă, Mihai; Chakravarty, M Mallar; Churchill, Nathan W; Cohen, Alexander Li; Craddock, R Cameron; Devenyi, Gabriel A; Eklund, Anders; Esteban, Oscar; Flandin, Guillaume; Ghosh, Satrajit S; Guntupalli, J Swaroop; Jenkinson, Mark; Keshavan, Anisha; Kiar, Gregory; Liem, Franziskus; Raamana, Pradeep Reddy; Raffelt, David; Steele, Christopher J; Quirion, Pierre-Olivier; Smith, Robert E; Strother, Stephen C; Varoquaux, Gaël; Wang, Yida; Yarkoni, Tal; Poldrack, Russell A (2017). BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. PLoS Computational Biology, 13(3):e1005209.

Fortuna, Miguel A; Zaman, Luis; Ofria, Charles; Wagner, Andreas (2017). The genotype-phenotype map of an evolving digital organism. PLoS Computational Biology, 13(2):e1005414.

Grano, Giovanni; Di Sorbo, Andrea; Mercaldo, Francesco; Visaggio, Corrado A; Canfora, Gerardo; Panichella, Sebastiano (2017). Android Apps and User Feedback: A Dataset for Software Evolution and Quality Improvement. In: Proceedings of the 2Nd ACM SIGSOFT International Workshop on App Market Analytics, Paderborn, Germany, 1 January 2017 - 1 January 2017, 8-11.

Rigoli, Francesco; Mathys, Christoph; Friston, Karl J; Dolan, Raymond J (2017). A unifying Bayesian account of contextual effects in value-based choice. PLoS Computational Biology, 13(10):e1005769.

Schmid, Franca; Tsai, Philbert S; Kleinfeld, David; Jenny, Patrick; Weber, Bruno (2017). Depth-dependent flow and pressure characteristics in cortical microvascular networks. PLoS Computational Biology, 13(2):e1005392.

Gallego, Guillermo; Lund, Jon E A; Mueggler, Elias; Rebecq, Henri; Delbruck, Tobi; Scaramuzza, Davide (2017). Event-based, 6-DOF camera tracking from photometric depth maps. IEEE Transactions on Pattern Analysis and Machine Intelligence, PP(99):n/a.

Arcadu, Filippo; Vogel, Jakob; Stampanoni, Marco; Marone, Federica (2017). Improving Analytical Tomographic Reconstructions Through Consistency Conditions. Fundamenta Informaticae, 155(4):341-361.

Devaine, Marie; Daunizeau, Jean (2017). Learning about and from others' prudence, impatience or laziness: The computational bases of attitude alignment. PLoS Computational Biology, 13(3):e1005422.

Castellví, Quim; Sánchez-Velázquez, Patricia; Moll, Xavier; Berjano, Enrique; Andaluz, Anna; Burdío, Fernando; Bijnens, Bart; Ivorra, Antoni (2017). Modeling liver electrical conductivity during hypertonic injection. International Journal for Numerical Methods in Biomedical Engineering, 34(1):e2904.

Courty, Nicolas; Flamary, Rémi; Tuia, Devis; Rakotomamonjy, Alain (2017). Optimal transport for domain adaptation. IEEE Transactions on Pattern Analysis and Machine Intelligence, 39(9):1853-1865.

Aponte, Eduardo A; Schöbi, Dario; Stephan, Klaas E; Heinzle, Jakob (2017). The Stochastic Early Reaction, Inhibition, and late Action (SERIA) model for antisaccades. PLoS Computational Biology, 13(8):e1005692.


di Biase, Marco; Bruntink, Magiel; Bacchelli, Alberto (2016). A Security Perspective on Code Review: The Case of Chromium. In: 2016 IEEE 16th International Working Conference on Source Code Analysis and Manipulation, Raleigh, NC, USA, 2 November 2016 - 3 November 2016, 21-30.

Cito, Jürgen; Rubin, Julia; Stanley-Marbell, Phillip; Rinard, Martin (2016). Battery-Aware Transformations in Mobile Applications. In: 31st IEEE/ACM International Conference on Automated Software Engineering (ASE 2016), Singapore, 3 September 2016 - 7 September 2016.

Montazeri, Hesam; Kuipers, Jack; Kouyos, Roger; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Günthard, Huldrych F; Beerenwinkel, Niko (2016). Large-scale inference of conjunctive Bayesian networks. Bioinformatics, 32(17):i727-i735.

Cohen, Daniel C; Costa, Armindo; Farber, Michael S; Kappeler, Thomas (2016). Correction to our article “Topology of random 2-complexes” published in DCG 47 (2012), pp. 117–149. Discrete & Computational Geometry, 56(2):502-503.

Panichella, Annibale; Alexandru, Carol V; Panichella, Sebastiano; Bacchelli, Alberto; Gall, Harald (2016). A search-based training algorithm for cost-aware defect prediction. In: Genetic and Evolutionary Computation Conference, Denver, 20 July 2016 - 24 July 2016, Epub ahead of print.

Tang, Li-Ying; Li, Sheng-Nan; Lin, Jian-Hong; Guo, Qiang; Liu, Jian-Guo (2016). Community structure detection based on the neighbor node degree information. International Journal of Modern Physics C, 27(04):1650046.

Cadosch, Dominique; Abel zur Wiesch, Pia; Kouyos, Roger; Bonhoeffer, Sebastian (2016). The Role of Adherence and Retreatment in De Novo Emergence of MDR-TB. PLoS Computational Biology, 12(3):e1004749.

Geraci, Gianluca; Congedo, Pietro Marco; Abgrall, Rémi; Iaccarino, Gianluca (2016). A novel weakly-intrusive non-linear multiresolution framework for uncertainty quantification in hyperbolic partial differential equations. Journal of Scientific Computing, 66(1):358-405.

Hofner, Benjamin; Kneib, Thomas; Hothorn, Torsten (2016). A unified framework of constrained regression. Statistics and Computing, 26(1-2):1-14.

Buzdugan, Laura; Kalisch, Markus; Navarro, Arcadi; Schunk, Daniel; Fehr, Ernst; Bühlmann, Peter (2016). Assessing statistical significance in multivariable genome wide association analysis. Bioinformatics, 32(13):1990-2000.

Franceschini, Andrea; Lin, Jianyi; von Mering, Christian; Jensen, Lars Juhl (2016). SVD-phy: improved prediction of protein functional associations through singular value decomposition of phylogenetic profiles. Bioinformatics, 32(7):1085-1087.


Bach, Dominik R (2015). Anxiety-like behavioural inhibition is normative under environmental threat-reward correlations. PLoS Computational Biology, 11(12):e1004646.

Cito, Jürgen; Leitner, Philipp; Gall, Harald C; Dadashi, Aryan; Keller, Anne; Roth, Andreas (2015). Runtime Metric Meets Developer - Building Better Cloud Applications Using Feedback. In: Proceedings of the 2015 ACM International Symposium on New Ideas, New Paradigms, and Reflections on Programming & Software (Onward! 2015), Pittsburgh, Pennsylvania, United States, 25 October 2015 - 30 October 2015.

Bertram, Nora (2015). Tagungsbericht. In: „Computing all their cost and trouble“. Finanzmärkte, Spekulationen und Regulierung in der Frühen Neuzeit und in der Moderne. Diskurse, Narrative, Strategien, Zürich, 8 October 2015 - 9 October 2015.

Brandtner, Martin; Leitner, Philipp; Gall, Harald C (2015). Intent, Tests, and Release Dependencies: Pragmatic Recipes for Source Code Integration. In: Proceedings of the 15th IEEE International Working Conference on Source Code Analysis and Manipulation (SCAM), Bremen, Germany, 27 September 2015 - 28 September 2015.

Klenner, Manfred (2015). Verb-centered Sentiment Inference with Description Logics. In: 6th Workshop on Computational Approaches to Subjectivity, Sentiment & Social Media Analysis, Lissabon, 17 September 2015 - 21 September 2015, 134-140.

Schaper, Elke; Korsunsky, Alexander; Pečerska, Jūlija; Messina, Antonio; Murri, Riccardo; Stockinger, Heinz; Zoller, Stefan; Xenarios, Ioannis; Anisimova, Maria (2015). TRAL: tandem repeat annotation library. Bioinformatics, 31(18):3051-3053.

Röst, Hannes L; Rosenberger, George; Aebersold, Ruedi; Malmström, Lars (2015). Efficient visualization of high-throughput targeted proteomics experiments: TAPIR. Bioinformatics, 31(14):2415-2417.

Arpaia, Luca; Ricchiuto, Mario; Abgrall, Rémi (2015). An ALE formulation for explicit Runge–Kutta residual distribution. Journal of Scientific Computing, 63(2):502-547.

Korn, Christoph W; Bach, Dominik R (2015). Maintaining homeostasis by decision-making. PLoS Computational Biology, 11(5):e1004301.

Panichella, Sebastiano; Arnaoudova, Venera; Di Penta, Massimiliano; Antoniol, Giuliano (2015). Would static analysis tools help developers with code reviews? In: 2015 IEEE 22nd International Conference on Software Analysis, Evolution and Reengineering (SANER), Montreal, QC, Canada, 2 April 2015 - 6 April 2015, 161-170.

Siebourg-Polster, Juliane; Mudrak, Daria; Emmenlauer, Mario; Rämö, Pauli; Dehio, Christoph; Greber, Urs; Fröhlich, Holger; Beerenwinkel, Niko (2015). NEMix: Single-cell Nested Effects Models for Probabilistic Pathway Stimulation. PLoS Computational Biology, 11(4):e1004078.

Brandtner, Martin; Müller, Sebastian; Leitner, Philipp; Gall, Harald C (2015). SQA-Profiles: Rule-based Activity Profiles for Continuous Integration Environments. In: 22nd IEEE International Conference on Software Analysis, Evolution, and Reengineering, Montréal, Canada, 2 March 2015 - 6 March 2015, 301-310.

Wang, Fang; Cao, Kun; Wu, Yi; Patzke, Greta R; Zhou, Ying (2015). Electronic and optical properties of N-doped Bi2O3 polymorphs for visible light-induced photocatalysis. Journal of Molecular Modeling, 21(3):2596-2604.

Panse, Christian; Trachsel, Christian; Grossmann, Jonas; Schlapbach, Ralph (2015). specL - An R/Bioconductor package to prepare peptide spectrum matches for use in targeted proteomics. Bioinformatics, 31(13):2228-2231.

Teleman, Johan; Röst, Hannes L; Rosenberger, George; Schmitt, Uwe; Malmström, Lars; Malmström, Johan; Levander, Fredrik (2015). DIANA - algorithmic improvements for analysis of data-independent acquisition MS data. Bioinformatics, 31(4):555-562.

Vayena, Effy; Salathé, Marcel; Madoff, Lawrence C; Brownstein, John S (2015). Ethical challenges of big data in public health. PLoS Computational Biology, 11(2):e1003904.

Krajbich, Ian; Hare, Todd A; Bartling, Björn; Morishima, Yosuke; Fehr, Ernst (2015). A common mechanism underlying food choice and social decisions. PLoS Computational Biology, 11(10):e1004371.

Metz, Andreas; Wolf, Martin; Achermann, Peter; Scholkmann, Felix (2015). A new approach for automatic removal of movement artifacts in near-infrared spectroscopy time series by means of acceleration data. Algorithms, 8(4):1052-1075.

Rutishauser, Ueli; Slotine, Jean-Jaques; Douglas, Rodney (2015). Computation in cynamically bounded asymmetric systems. PLoS Computational Biology, 11(1):e1004039.

Hosseini, Sayed-Rzgar; Barve, Aditya; Wagner, Andreas (2015). Exhaustive analysis of a genotype space comprising 1015 central carbon metabolisms reveals an organization conducive to metabolic innovation. PLoS Computational Biology, 11(8):e1004329.

Munglani, Gautam; Vetter, Roman; Wittel, Falk K; Herrmann, Hans J (2015). Orthotropic rotation-free thin shell elements. Computational Mechanics, 56(5):785-793.

Schmid, Marc W; Grossniklaus, Ueli (2015). Rcount: simple and flexible RNA-Seq read counting. Bioinformatics, 31(3):436-437.

Sinnott, Richard O; Bayliss, Christopher; Bromage, Andrew; Galang, Gerson; Grazioli, Guido; Greenwood, Philip; Macaulay, Angus; Morandini, Luca; Nogoorani, Ghazal; Nino-Ruiz, Marcos; Tomko, Martin; Pettit, Christopher; Sarwar, Muhammad; Stimson, Robert; Voorsluys, William; Widjaja, Ivo (2015). The Australia urban research gateway. Concurrency and Computation: Practice & Experience, 27(2):358-375.


Henshaw, Jonathan M; Jennions, Michael D; Kokko, Hanna (2014). The Economics of Egg Trading: Mating Rate, Sperm Competition and Positive Frequency-Dependence. Dynamic Games and Applications, 4(4):379-390.

Dall'Olio, Giovanni M; Vahdati, Ali R; Bertranpetit, Jaume; Wagner, Andreas; Laayouni, Hafid (2014). VCF2Networks: applying genotype networks to single-nucleotide variants data. Bioinformatics, 31(3):438-439.

Volk, Martin; Clematide, Simon (2014). Detecting Code-Switching in a Multilingual Alpine Heritage Corpus. In: Proceedings of the First Workshop on Computational Approaches to Code Switching, Doha, Qatar, 25 October 2014 - 25 October 2014, 24-33.

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Fischer, B; Grossmann, J; Roth, V; Gruissem, W; Baginsky, S; Buhmann, J M (2006). Semi-supervised LC/MS alignment for differential proteomics. Bioinformatics, 22(14):e132-40.

Sauter, S A (2006). A refined finite element convergence theory for highly indefinite Helmholtz problems. Computing, 78(2):101-115.

Arratia, R; Barbour, A D; Tavaré, S (2006). A tale of three couplings: Poisson-Dirichlet and GEM approximations for random permutations. Combinatorics, Probability & Computing, 15(1-2):31-62.

Paolella, Marc; Hartz, Christoph; Mittnik, Stefan (2006). Accurate value-at-risk forecasting based on the Normal-GARCH model. Computational Statistics & Data Analysis, 51(4):2295-2312.

Hackbusch, W; Löhndorf, M; Sauter, S A (2006). Coarsening of boundary-element spaces. Computing, 77(3):253-273.

Sauter, S A; Warnke, R (2006). Composite finite elements for elliptic boundary value problems with discontinuous coefficients. Computing, 77(1):29-55.

Liu, J; Mohammed, J; Carter, J; Ranka, S; Kahveci, T; Baudis, Michael (2006). Distance-based clustering of CGH data. Bioinformatics, 22(16):1971-1978.

Noetzli, J; Huggel, C; Hoelzle, M; Haeberli, W (2006). GIS-based modelling of rock-ice avalanches from Alpine permafrost areas. Computational Geosciences, 10(2):161-178.

Wu, Y; Price, B; Isenegger, D; Fischlin, A; Allgöwer, B; Nüesch, D (2006). Real-time 4D visualization of migratory insect dynamics within an integrated spatiotemporal system. Ecological Informatics, 1(2):179-187.


Barbour, A D; Granovsky, B (2005). Random combinatorial structures: the convergent case. Journal of Combinatorial Theory, Series A, 109(2):203-220.


Babuska, I; Sauter, Stefan A (2004). Efficient solution of lattice equations by the recovery method. I. Scalar elliptic problems. Computing and Visualization in Science, 7(3-4):113-119.


Repin, S; Sauter, S; Smolianski, A (2003). A posteriori error estimation for the Dirichlet problem with account of the error in the approximation of boundary conditions. Computing, 70(3):205-233.

Feuchter, D; Heppner, I; Sauter, S A; Wittum, G (2003). Bridging the gap between geometric and algebraic multi-grid methods. Computing and Visualization in Science, 6(1):1-13.

Paolella, Marc (2003). Computing moments of ratios of quadratic forms in normal variables. Computational Statistics & Data Analysis, 42(3):313-331.


Paolella, Marc; Butler, R W (2002). Calculating the density and distribution function for the singly and doubly noncentral F. Statistics and Computing, 12(1):9-16.


Chipot, M; Elfanni, A (2001). Some remarks on nonuniqueness of minimizers for discrete minimization problems. Journal of Applied Analysis, 7(2):191-208.


Sauter, S A (2000). Variable order panel clustering. Computing, 64(3):223-261.


Constantin, A (1999). Nonlinear alternative: application to an integral equation. Journal of Applied Analysis, 5(1):119-123.

Eichelsbacher, Peter; Roos, Malgorzata (1999). Compound poisson approximation for dissociated random variables via Stein's method. Combinatorics, Probability & Computing, 8(4):335-346.

Arratia, R; Barbour, A D; Tavaré, S (1999). On Poisson-Dirichlet limits for random decomposable combinatorial structures. Combinatorics, Probability & Computing, 8(3):193-208.

Cakir, I; Chryssaphinou, O; Månsson, M (1999). On a conjecture by Eriksson concerning overlap in strings. Combinatorics, Probability & Computing, 8(5):429-440.

Arratia, R; Barbour, A D; Tavaré, S (1999). The Poisson-Dirichlet distribution and the scale-invariant Poisson process. Combinatorics, Probability & Computing, 8(5):407-416.

Hummel, C; Schroeder, Viktor (1999). Tits geometry of cocompact real-analytic Hadamard manifolds of dimension 4. Differential Geometry and its Applications, 11(2):129-143.


Smarandache, R; Rosenthal, J (1998). A state space approach for constructing MDS rate 1/n convolutional codes. In: 1998 Information Theory Workshop. Piscataway, NJ: IEEE, 116-117.


Barbour, A D; Godbole, A; Qian, J (1997). Imperfections in random tournaments. Combinatorics, Probability & Computing, 6(1):1-15.


Stark, D (1995). First occurrence in pairs of long words: a Penney-ante conjecture of Pevzner. Combinatorics, Probability & Computing, 4(3):279-285.

Chipot, M (1995). The use of Young measures for constructing minimizing sequences in the calculus of variations. Journal of Applied Analysis, 1(1):71-81.


Barbour, A D; Tavaré, S (1994). A rate for the Erdős-Turán law. Combinatorics, Probability & Computing, 3(2):167-176.

Hackbusch, W; Sauter, S A (1994). On numerical cubatures of nearly singular surface integrals arising in BEM collocation. Computing, 52(2):139-159.


Yang, H (1993). Conjugate gradient methods for the Rayleigh quotient minimization of generalized eigenvalue problems. Computing, 51(1):79-94.


Barbour, A D; Karonski, A (1989). A central limit theorem for decomposable random variables with applications to random graphs. Journal of Combinatorial Theory. Series B, 47(2):125-145.

This list was generated on Mon Jun 21 01:49:48 2021 CEST.