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Leitner, Lorenz; McCallin, Shawna (2024). Guiding phage therapy with genomic surveillance. Nature Microbiology, 9(11):2799-2800.
Karakus, Umut; Sempere Borau, Milagros; Martínez-Barragán, Patricia; von Kempis, Josephine; Yildiz, Soner; Arroyo-Fernández, Laura M; Pohl, Marie O; Steiger, Julia A; Glas, Irina; Hunziker, Annika; García-Sastre, Adolfo; Stertz, Silke (2024). MHC class II proteins mediate sialic acid independent entry of human and avian H2N2 influenza A viruses. Nature Microbiology, 9(10):2626-2641.
Mathis, Nicolas; Allam, Ahmed; Tálas, András; Kissling, Lucas; Benvenuto, Elena; Schmidheini, Lukas; Schep, Ruben; Damodharan, Tanav; Balázs, Zsolt; Janjuha, Sharan; Ioannidi, Eleonora I; Böck, Desirée; van Steensel, Bas; Krauthammer, Michael; Schwank, Gerald (2024). Publisher Correction: Machine learning prediction of prime editing efficiency across diverse chromatin contexts. Nature Biotechnology:Epub ahead of print.
Bracha, Shahar; Johnson, Hannah J; Pranckevicius, Nicole A; Catto, Francesca; Economides, Athena E; Litvinov, Sergey; Hassi, Karoliina; Rigoli, Marco Tullio; Cheroni, Cristina; Bonfanti, Matteo; Valenti, Alessia; Stucchi, Sarah; Attreya, Shruti; Ross, Paul D; Walsh, Daniel; Malachi, Nati; Livne, Hagay; Eshel, Reut; Krupalnik, Vladislav; Levin, Doron; Cobb, Stuart; Koumoutsakos, Petros; Caporale, Nicolò; Testa, Giuseppe; Aguzzi, Adriano; Koshy, Anita A; Sheiner, Lilach; Rechavi, Oded (2024). Engineering Toxoplasma gondii secretion systems for intracellular delivery of multiple large therapeutic proteins to neurons. Nature Microbiology, 9(8):2051-2072.
Mathis, Nicolas; Allam, Ahmed; Tálas, András; Kissling, Lucas; Benvenuto, Elena; Schmidheini, Lukas; Schep, Ruben; Damodharan, Tanav; Balazs, Zsolt; Janjuha, Sharan; Ioannidi, Eleonora I; Böck, Desirée; van Steensel, Bas; Krauthammer, Michael; Schwank, Gerald (2024). Machine learning prediction of prime editing efficiency across diverse chromatin contexts. Nature Biotechnology:Epub ahead of print.
Sollier, Julie; Basler, Marek; Broz, Petr; Dittrich, Petra S; Drescher, Knut; Egli, Adrian; Harms, Alexander; Hierlemann, Andreas; Hiller, Sebastian; King, Carolyn G; McKinney, John D; Moran-Gilad, Jacob; Neher, Richard A; Page, Malcolm G P; Panke, Sven; Persat, Alexandre; Picotti, Paola; Rentsch, Katharina M; Rivera-Fuentes, Pablo; Sauer, Uwe; Stolz, Daiana; Tschudin-Sutter, Sarah; van Delden, Christian; van Nimwegen, Erik; Veening, Jan-Willem; Zampieri, Mattia; Zinkernagel, Annelies S; Khanna, Nina; Bumann, Dirk; Jenal, Urs; et al (2024). Revitalizing antibiotic discovery and development through in vitro modelling of in-patient conditions. Nature Microbiology, 9(1):1-3.
Voigt, Fabian F; Reuss, Anna Maria; Naert, Thomas; Hildebrand, Sven; Schaettin, Martina; Hotz, Adriana L; Whitehead, Lachlan; Bahl, Armin; Neuhauss, Stephan C F; Roebroeck, Alard; Stoeckli, Esther T; Lienkamp, Soeren S; Aguzzi, Adriano; Helmchen, Fritjof (2024). Reflective multi-immersion microscope objectives inspired by the Schmidt telescope. Nature Biotechnology, 42(1):65-71.
Heredia-Ponce, Zaira; Secchi, Eleonora; Toyofuku, Masanori; Marinova, Gabriela; Savorana, Giovanni; Eberl, Leo (2023). Genotoxic stress stimulates eDNA release via explosive cell lysis and thereby promotes streamer formation of Burkholderia cenocepacia H111 cultured in a microfluidic device. npj Biofilms and Microbiomes, 9(1):96.
Lutz, Stefanie; Bodenhausen, Natacha; Hess, Julia; Valzano-Held, Alain; Waelchli, Jan; Deslandes-Hérold, Gabriel; Schlaeppi, Klaus; van der Heijden, Marcel G A (2023). Soil microbiome indicators can predict crop growth response to large-scale inoculation with arbuscular mycorrhizal fungi. Nature Microbiology, 8(12):2277-2289.
Arıkan, Muzaffer; Demir, Tuğçe Kahraman; Yıldız, Zeynep; Nalbantoğlu, Özkan Ufuk; Korkmaz, Nur Damla; Yılmaz, Nesrin H; Şen, Aysu; Özcan, Mutlu; Muth, Thilo; Hanoğlu, Lütfü; Yıldırım, Süleyman (2023). Metaproteogenomic analysis of saliva samples from Parkinson's disease patients with cognitive impairment. npj Biofilms and Microbiomes, 9(1):86.
Yan, YiTing; Lei, Yu; Qu, Ying; Fan, Zhen; Xu, Yangbin; Du, Qian; Brugger, Daniel; Chen, Yulin; Zhang, Ke; Zhang, Enping (2023). Bacteroides uniformis-induced perturbations in colonic microbiota and bile acid levels inhibit TH17 differentiation and ameliorate colitis developments. npj Biofilms and Microbiomes, 9(1):56.
Mathis, Nicolas; Allam, Ahmed; Kissling, Lucas; Marquart, Kim Fabiano; Schmidheini, Lukas; Solari, Cristina; Balázs, Zsolt; Krauthammer, Michael; Schwank, Gerald (2023). Predicting prime editing efficiency and product purity by deep learning. Nature Biotechnology, 41(8):1151-1159.
Hartman, Kyle; Schmid, Marc W; Bodenhausen, Natacha; Bender, S Franz; Valzano-Held, Alain Y; Schlaeppi, Klaus; van der Heijden, Marcel G A (2023). A symbiotic footprint in the plant root microbiome. Environmental Microbiome, 18(1):65.
Sannino, Ciro; Qi, Weihong; Rüthi, Joel; Stierli, Beat; Frey, Beat (2023). Distinct taxonomic and functional profiles of high Arctic and alpine permafrost-affected soil microbiomes. Environmental Microbiome, 18(1):54.
Jeong, Hyobin; Grimes, Karen; Rauwolf, Kerstin K; Bruch, Peter-Martin; Rausch, Tobias; Hasenfeld, Patrick; Benito, Eva; Roider, Tobias; Sabarinathan, Radhakrishnan; Porubsky, David; Herbst, Sophie A; Erarslan-Uysal, Büşra; Jann, Johann-Christoph; Marschall, Tobias; Nowak, Daniel; Bourquin, Jean-Pierre; Kulozik, Andreas E; Dietrich, Sascha; Bornhauser, Beat; Sanders, Ashley D; Korbel, Jan O (2023). Functional analysis of structural variants in single cells using Strand-seq. Nature Biotechnology, 41(6):832-844.
Schmid, Robin; Heuckeroth, Steffen; Korf, Ansgar; Smirnov, Aleksandr; Myers, Owen; Dyrlund, Thomas S; Bushuiev, Roman; Murray, Kevin J; Hoffmann, Nils; Lu, Miaoshan; Sarvepalli, Abinesh; Zhang, Zheng; Fleischauer, Markus; Dührkop, Kai; Wesner, Mark; Hoogstra, Shawn J; Rudt, Edward; Mokshyna, Olena; Brungs, Corinna; Ponomarov, Kirill; Mutabdžija, Lana; Damiani, Tito; Pudney, Chris J; Earll, Mark; Helmer, Patrick O; Fallon, Timothy R; Schulze, Tobias; Rivas-Ubach, Albert; Bilbao, Aivett; Richter, Henning; et al (2023). Integrative analysis of multimodal mass spectrometry data in MZmine 3. Nature Biotechnology, 41(4):447-449.
Nguyen, Tieu Ngoc; Chebbi, Imène; Le Fèvre, Raphaël; Guyot, François; Alphandéry, Edouard (2023). Non-pyrogenic highly pure magnetosomes for efficient hyperthermia treatment of prostate cancer. Applied Microbiology and Biotechnology, 107(4):1159-1176.
Swayambhu, Meghna; Kümmerli, Rolf; Arora, Natasha (2023). Microbiome-Based Stain Analyses in Crime Scenes. Applied and Environmental Microbiology, 89(1):e0132522.
Laganenka, Leanid; Lee, Jae-Woo; Malfertheiner, Lukas; Dieterich, Cora Lisbeth; Fuchs, Lea; Piel, Jörn; von Mering, Christian; Sourjik, Victor; Hardt, Wolf-Dietrich (2023). Chemotaxis and autoinducer-2 signalling mediate colonization and contribute to co-existence of Escherichia coli strains in the murine gut. Nature Microbiology, 8(2):204-217.
Coenye, Tom; Spittaels, Karl-Jan; Achermann, Yvonne (2022). The role of biofilm formation in the pathogenesis and antimicrobial susceptibility of Cutibacterium acnes. Biofilm, 4:100063.
Steiner, Elisabeth; Shilling, Rebecca E; Richter, Anja M; Schmid, Nadine; Fazli, Mustafa; Kaever, Volkhard; Jenal, Urs; Tolker-Nielsen, Tim; Eberl, Leo (2022). The BDSF quorum sensing receptor RpfR regulates Bep exopolysaccharide synthesis in Burkholderia cenocepacia via interaction with the transcriptional regulator BerB. npj Biofilms and Microbiomes, 8:93.
Clavien, Pierre-Alain; Dutkowski, Philipp; Mueller, Matteo; Eshmuminov, Dilmurodjon; Bautista Borrego, Lucia; Weber, Achim; Muellhaupt, Beat; Sousa Da Silva, Richard X; Burg, Brian R; Rudolf von Rohr, Philipp; Schuler, Martin J; Becker, Dustin; Hefti, Max; Tibbitt, Mark W (2022). Transplantation of a human liver following 3 days of ex situ normothermic preservation. Nature Biotechnology, 40(11):1610-1616.
Purtschert-Montenegro, Gabriela; Cárcamo-Oyarce, Gerardo; Pinto-Carbó, Marta; Agnoli, Kirsty; Bailly, Aurélien; Eberl, Leo (2022). Pseudomonas putida mediates bacterial killing, biofilm invasion and biocontrol with a type IVB secretion system. Nature Microbiology, 7(10):1547-1557.
Cavallaro, Alessio; Rhoads, William J; Huwiler, Simona G; Stachler, Elyse; Hammes, Frederik (2022). Potential probiotic approaches to control Legionella in engineered aquatic ecosystems. FEMS Microbiology Ecology, 98(8):fiac071.
Jahn, Katharina; Dreifuss, David; Topolsky, Ivan; Kull, Anina; Ganesanandamoorthy, Pravin; Fernandez-Cassi, Xavier; Bänziger, Carola; Devaux, Alexander J; Stachler, Elyse; Caduff, Lea; Cariti, Federica; Corzón, Alex Tuñas; Fuhrmann, Lara; Chen, Chaoran; Jablonski, Kim Philipp; Nadeau, Sarah; Feldkamp, Mirjam; Beisel, Christian; Aquino, Catharine; Stadler, Tanja; Ort, Christoph; Kohn, Tamar; Julian, Timothy R; Beerenwinkel, Niko (2022). Early detection and surveillance of SARS-CoV-2 genomic variants in wastewater using COJAC. Nature Microbiology, 7(8):1151-1160.
Jacobsen, Julius O B; Baudis, Michael; Baynam, Gareth S; Beckmann, Jacques S; Beltran, Sergi; Buske, Orion J; et al (2022). The GA4GH Phenopacket schema defines a computable representation of clinical data. Nature Biotechnology, 40(6):817-820.
Geisshüsler, Silvana; Schineis, Philipp; Langer, Lara; Wäckerle-Men, Ying; Leroux, Jean-Christophe; Halin, Cornelia; Vogel-Kindgen, Sarah; Johansen, Pål; Gander, Bruno (2022). Amphiphilic Cyclodextrin‐Based Nanoparticulate Vaccines Can Trigger T‐Cell Immune Responses. Advanced NanoBiomed Research, 2(4):2100082.
Alphandéry, Edouard (2022). Ultrasound and nanomaterial: an efficient pair to fight cancer. Journal of Nanobiotechnology, 20(1):139.
Hochstrasser, Ramon; Hilbi, Hubert (2022). The Legionella Lqs-LvbR Regulatory Network Controls Temperature-Dependent Growth Onset and Bacterial Cell Density. Applied and Environmental Microbiology, 88(5):e0237021.
Viéitez, Cristina; Busby, Bede P; Ochoa, David; Mateus, André; Memon, Danish; Galardini, Marco; Yildiz, Umut; Trovato, Matteo; Jawed, Areeb; Geiger, Alexander G; Oborská-Oplová, Michaela; Potel, Clement M; Vonesch, Sibylle C; Szu Tu, Chelsea; Shahraz, Mohammed; Stein, Frank; Steinmetz, Lars M; Panse, Vikram G; Noh, Kyung-Min; Savitski, Mikhail M; Typas, Athanasios; Beltrao, Pedro (2022). High-throughput functional characterization of protein phosphorylation sites in yeast. Nature Biotechnology, 40(3):382-390.
Gaurav, Kumar; Arora, Sanu; Silva, Paula; et al; Sánchez-Martín, Javier; Widrig, Victoria; Keller, Beat (2022). Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement. Nature Biotechnology, 40(3):422-431.
Tao, Yile; Yue, Yang; Qiu, Guangyu; Ji, Zheng; Spillman, Martin; Gai, Zhibo; Chen, Qingfa; Bielecki, Michel; Huber, Michael; Trkola, Alexandra; Wang, Qiyuan; Cao, Junji; Wang, Jing (2022). Comparison of analytical sensitivity and efficiency for SARS-CoV-2 primer sets by TaqMan-based and SYBR Green-based RT-qPCR. Applied Microbiology and Biotechnology, 106(5-6):2207-2218.
Delbrück, Alessia I; Tritten, Yvette; Nanni, Paolo; Heydenreich, Rosa; Mathys, Alexander (2022). Moderate High-Pressure Superdormancy in $\textit{Bacillus}$ Spores: Properties of Superdormant Spores and Proteins Potentially Influencing Moderate High-Pressure Germination. Applied and Environmental Microbiology, 88(4):e0240621.
Romdhane, Sana; Spor, Aymé; Banerjee, Samiran; Breuil, Marie-Christine; Bru, David; Chabbi, Abad; Hallin, Sara; van der Heijden, Marcel G A; Saghai, Aurélien; Philippot, Laurent (2022). Land-use intensification differentially affects bacterial, fungal and protist communities and decreases microbiome network complexity. Environmental Microbiome, 17:1.
Cao, Yu; Dever, Katherine; Sivasankaran, Sathesh Kumar; Nguyen, Scott V; Macori, Guerrino; Naithani, Ankita; Gopinath, Gopal R; Tall, Ben; Lehner, Angelika; Stephan, Roger; Srikumar, Shabarinath; Fanning, Séamus (2021). Alterations in the Transcriptional Landscape Allow Differential Desiccation Tolerance in Clinical Cronobacter sakazakii. Applied and Environmental Microbiology, 87(24):e0083021.
Onjong, Hillary Adawo; Ntuli, Victor; Wambui, Joseph; Mwaniki, Mercy; Kamau Njage, Patrick Murigu (2021). Potential Influence of Regulation of the Food Value Chain on Prevalence and Patterns of Antimicrobial Resistance: the Case of Tilapia (Oreochromis niloticus). Applied and Environmental Microbiology, 87(23):e00945-21.
Rothgangl, Tanja; Dennis, Melissa K; Lin, Paulo J C; Oka, Rurika; Witzigmann, Dominik; Villiger, Lukas; Qi, Weihong; Hruzova, Martina; Kissling, Lucas; Lenggenhager, Daniela; Borrelli, Costanza; Egli, Sabina; Frey, Nina; Bakker, Noëlle; Walker, John A; Kadina, Anastasia P; Victorov, Denis V; Pacesa, Martin; Kreutzer, Susanne; Kontarakis, Zacharias; Moor, Andreas; Jinek, Martin; Weissman, Drew; Stoffel, Markus; van Boxtel, Ruben; Holden, Kevin; Pardi, Norbert; Thöny, Beat; Häberle, Johannes; Tam, Ying K; Semple, Sean C; Schwank, Gerald (2021). In vivo adenine base editing of PCSK9 in macaques reduces LDL cholesterol levels. Nature Biotechnology, 39(8):949-957.
Tytgat, Hanne L P; Rasinkangas, Pia; Ritari, Jarmo; Reunanen, Justus; Aalvink, Steven; Lin, Chia-Wei; Palva, Airi; Douillard, François P; de Vos, Willem M (2021). Selection and characterization of a SpaCBA pilus-secreting food-grade derivative of Lacticaseibacillus rhamnosus GG. Applied Microbiology and Biotechnology, 105(3):1123-1131.
Romito, Marianna; Juillerat, Alexandre; Kok, Yik Lim; Hildenbeutel, Markus; Rhiel, Manuel; Andrieux, Geoffroy; Geiger, Johannes; Rudolph, Carsten; Mussolino, Claudio; Duclert, Aymeric; Metzner, Karin J; Duchateau, Philippe; Cathomen, Toni; Cornu, Tatjana I (2021). Preclinical Evaluation of a Novel TALEN Targeting CCR5 Confirms Efficacy and Safety in Conferring Resistance to HIV-1 Infection. Biotechnology Journal, 16(1):2000023.
Straub, Hervé; Eberl, Leo; Zinn, Manfred; Rossi, René M; Maniura-Weber, Katharina; Ren, Qun (2020). A microfluidic platform for in situ investigation of biofilm formation and its treatment under controlled conditions. Journal of Nanobiotechnology, 18:166.
Heredia-Ponce, Zaira; Gutiérrez-Barranquero, Jose Antonio; Purtschert-Montenegro, Gabriela; Eberl, Leo; Cazorla, Francisco M; de Vicente, Antonio (2020). Biological role of EPS from Pseudomonas syringae pv. syringae UMAF0158 extracellular matrix, focusing on a Psl-like polysaccharide. npj Biofilms and Microbiomes, 6:875.
Dutkowski, Philipp; Mueller, Matteo; Eshmuminov, Dilmurodjon; Bautista Borrego, Lucia; Becker, Dustin; Hefti, Max; Schuler, Martin J; Rudolf von Rohr, Philipp; Clavien, Pierre-Alain (2020). Reply to: Lactate Measurements in an Integrated Perfusion Machine for Human Livers. Nature Biotechnology, 38(11):1263-1264.
Gray, Alison; Bradbury, Andrew R M; Knappik, Achim; Plückthun, Andreas; Borrebaeck, Carl A K; Dübel, Stefan (2020). Animal-free alternatives and the antibody iceberg. Nature Biotechnology, 38(11):1234-1239.
Šimek, Karel; Grujčić, Vesna; Mukherjee, Indranil; Kasalický, Vojtěch; Nedoma, Jiří; Posch, Thomas; Mehrshad, Maliheh; Salcher, Michaela M (2020). Cascading effects in freshwater microbial food webs by predatory Cercozoa, Katablepharidacea and ciliates feeding on aplastidic bacterivorous cryptophytes. FEMS Microbiology Ecology, 96(10):fiaa121.
Anderson, Annette Carola; Rothballer, Michael; Altenburger, Markus Jörg; Woelber, Johan Peter; Karygianni, Lamprini; Vach, Kirstin; Hellwig, Elmar; Al-Ahmad, Ali (2020). Long-Term Fluctuation of Oral Biofilm Microbiota following Different Dietary Phases. Applied and Environmental Microbiology, 86(20):e01421.
Gimeno, A; Kägi, A; Drakopoulos, D; Bänziger, I; Lehmann, E; Forrer, H‐R; Keller, Beat; Vogelgsang, S (2020). From laboratory to the field: biological control of Fusarium graminearum on infected maize crop residues. Journal of applied microbiology, 129(3):680-694.
Gu, Shaohua; Wei, Zhong; Shao, Zhengying; Friman, Ville-Petri; Cao, Kehao; Yang, Tianjie; Kramer, Jos; Wang, Xiaofang; Li, Mei; Mei, Xinlan; Xu, Yangchun; Shen, Qirong; Kümmerli, Rolf; Jousset, Alexandre (2020). Competition for iron drives phytopathogen control by natural rhizosphere microbiomes. Nature Microbiology, 5(8):1002-1010.
Niggli, Selina; Kümmerli, Rolf (2020). Strain Background, Species Frequency, and Environmental Conditions Are Important in Determining Pseudomonas aeruginosa and Staphylococcus aureus Population Dynamics and Species Coexistence. Applied and Environmental Microbiology, 86(18):e00962-20.
Villaseñor, Rodrigo; Pfaendler, Ramon; Ambrosi, Christina; Butz, Stefan; Giuliani, Sara; Bryan, Elana; Sheahan, Thomas W; Gable, Annika L; Schmolka, Nina; Manzo, Massimiliano; Wirz, Joël; Feller, Christian; von Mering, Christian; Aebersold, Ruedi; Voigt, Philipp; Baubec, Tuncay (2020). ChromID identifies the protein interactome at chromatin marks. Nature Biotechnology, 38(6):728-736.
Villaseñor, Rodrigo; Pfaendler, Ramon; Ambrosi, Christina; Butz, Stefan; Giuliani, Sara; Bryan, Elana; Sheahan, Thomas W; Gable, Annika L; Schmolka, Nina; Manzo, Massimiliano; Wirz, Joël; Feller, Christian; von Mering, Christian; Aebersold, Ruedi; Voigt, Philipp; Baubec, Tuncay (2020). Publisher Correction: ChromID identifies the protein interactome at chromatin marks. Nature Biotechnology, 38(6):757.
Kletzmayr, Anna; Clement Frey, Flurina; Zimmermann, Miriam; Eberli, Daniel; Millan, Christopher (2020). An Automatable Hydrogel Culture Platform for Evaluating Efficacy of Antibody-Based Therapeutics in Overcoming Chemoresistance. Biotechnology Journal, 15(5):e1900439.
Friker, Brian; Morach, Marina; Püntener, Sabrina; Cernela, Nicole; Horlbog, Jule; Stephan, Roger (2020). Assessing the microbiological quality of raw goats' and ewes' tank milk samples in Switzerland. International Dairy Journal, 102:104609.
Sanders, Ashley D; Meiers, Sascha; Ghareghani, Maryam; Porubsky, David; Jeong, Hyobin; van Vliet, M Alexandra C C; Rausch, Tobias; Richter-Pechańska, Paulina; Kunz, Joachim B; Jenni, Silvia; Bolognini, Davide; Longo, Gabriel M C; Raeder, Benjamin; Kinanen, Venla; Zimmermann, Jürgen; Benes, Vladimir; Schrappe, Martin; Mardin, Balca R; Kulozik, Andreas E; Bornhauser, Beat; Bourquin, Jean-Pierre; Marschall, Tobias; Korbel, Jan O (2020). Single-cell analysis of structural variations and complex rearrangements with tri-channel processing. Nature Biotechnology, 38(3):343-354.
Eshmuminov, Dilmurodjon; Becker, Dustin; Bautista Borrego, Lucia; Hefti, Max; Schuler, Martin J; Hagedorn, Catherine; Muller, Xavier; Mueller, Matteo; Onder, Christopher; Graf, Rolf; Weber, Achim; Dutkowski, Philipp; Rudolf von Rohr, Philipp; Clavien, Pierre-Alain (2020). An Integrated Perfusion Machine Preserves Injured Human Livers For 1 Week. Nature Biotechnology, 38(2):189-198.
Aalto-Araneda, Mariella; Pöntinen, Anna; Pesonen, Maiju; Corander, Jukka; Markkula, Annukka; Tasara, Taurai; Stephan, Roger; Korkeala, Hannu (2020). Strain variability of Listeria monocytogenes under NaCl stress elucidated by a high-throughput microbial growth data assembly and analysis protocol. Applied and Environmental Microbiology, 86(6):e02378-19.
Kramer, Jos; López Carrasco, Miguel Ángel; Kümmerli, Rolf (2020). Positive linkage between bacterial social traits reveals that homogeneous rather than specialised behavioral repertoires prevail in natural Pseudomonas communities. FEMS Microbiology Ecology, 96(1):fiz185.
Doswald, Simon; Stark, Wendelin Jan; Beck-Schimmer, Beatrice (2019). Biochemical functionality of magnetic particles as nanosensors: how far away are we to implement them into clinical practice? Journal of Nanobiotechnology, 17:73.
Negrete, Flavia; Jang, Hyein; Gangiredla, Jayanthi; Woo, JungHa; Lee, YouYoung; Patel, Isha R; Chase, Hannah R; Finkelstein, Samantha; Wang, Caroline Z; Srikumar, Shabarinath; Nguyen, Scott; Eshwar, Athmanya; Stephan, Roger; Lehner, Angelika; Fanning, Séamus; Tall, Ben D; Gopinath, Gopal R (2019). Genome-wide survey of efflux pump-coding genes associated with Cronobacter survival, osmotic adaptation, and persistence. Current Opinion in Food Science, 30:32-42.
Silva, Marisa O D; Pernthaler, Jakob (2019). Priming of microcystin degradation in carbon-amended membrane biofilm communities is promoted by oxygen-limited conditions. FEMS Microbiology Ecology, 95(11):157.
Bulzu, Paul-Adrian; Andrei, Adrian-Stefan; Salcher, Michaela M; Mehrshad, Maliheh; Inoue, Keiichi; Kandori, Hideki; Beja, Oded; Ghai, Rohit; Banciu, Horia L (2019). Casting light on Asgardarchaeota metabolism in a sunlit microoxic niche. Nature Microbiology, 4(7):1129-1137.
Rocha Martin, Vanesa Natalin; Lacroix, Christophe; Killer, Jiri; Bunesova, Vera; Voney, Evelyn; Braegger, Christian; Schwab, Clarissa (2019). Cutibacterium avidum is phylogenetically diverse with a subpopulation being adapted to the infant gut. Systematic and Applied Microbiology, 42(4):506-516.
Kraemer, Moritz U G; Reiner, Robert C; Brady, Oliver J; Messina, Jane P; Gilbert, Marius; Pigott, David M; Yi, Dingdong; Johnson, Kimberly; Earl, Lucas; Marczak, Laurie B; Shirude, Shreya; Davis Weaver, Nicole; Bisanzio, Donal; Perkins, T Alex; Lai, Shengjie; Lu, Xin; Jones, Peter; Coelho, Giovanini E; Carvalho, Roberta G; Van Bortel, Wim; Marsboom, Cedric; Hendrickx, Guy; Schaffner, Francis; Moore, Chester G; Nax, Heinrich H; Bengtsson, Linus; Wetter, Erik; Tatem, Andrew J; Brownstein, John S; Smith, David L; et al (2019). Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus. Nature Microbiology, 4(5):854-863.
Fiume, Marc; Cupak, Miroslav; Keenan, Stephen; Rambla, Jordi; de la Torre, Sabela; Dyke, Stephanie O M; Brookes, Anthony J; Carey, Knox; Lloyd, David; Goodhand, Peter; Haeussler, Maximilian; Baudis, Michael; Stockinger, Heinz; Dolman, Lena; Lappalainen, Ilkka; Törnroos, Juha; Linden, Mikael; Spalding, J Dylan; Ur-Rehman, Saif; Page, Angela; Flicek, Paul; Sherry, Stephen; Haussler, David; Varma, Susheel; Saunders, Gary; Scollen, Serena (2019). Federated discovery and sharing of genomic data using Beacons. Nature Biotechnology, 37(3):220-224.
Rocha Martin, Vanesa Natalin; Schwab, Clarissa; Krych, Lukasz; Voney, Evelyn; Geirnaert, Annelies; Braegger, Christian; Lacroix, Christophe (2019). Colonization of Cutibacterium avidum during infant gut microbiota establishment. FEMS Microbiology Ecology, 95(1):fiy215.
Winkler, Hans Christian; Notter, Tina; Meyer, Urs; Naegeli, Hanspeter (2018). Critical review of the safety assessment of titanium dioxide additives in food. Journal of Nanobiotechnology, 16(1):51.
Vogt, Cédric M; Hilbe, Monika; Ackermann, Mathias; Aguilar, Claudi; Eichwald, Catherine (2018). Mouse intestinal microbiota reduction favors local intestinal immunity triggered by antigens displayed in Bacillus subtilis biofilm. Microbial Cell Factories, 17(1):187.
Srikumar, Shabarinath; Cao, Yu; Yan, Qiongqiong; Van Hoorde, Koenraad; Nguyen, Scott; Cooney, Shane; Gopinath, Gopal R; Tall, Ben D; Sivasankaran, Sathesh K; Lehner, Angelika; Stephan, Roger; Fanning, Séamus (2018). RNA sequencing-based transcriptional overview of Xerotolerance in Cronobacter sakazakii SP291. Applied and Environmental Microbiology, 85(3):pii: e01993-18.
Alfreider, Albin; Grimus, Victoria; Luger, Martin; Ekblad, Anja; Salcher, Michaela M; Summerer, Monika (2018). Autotrophic carbon fixation strategies used by nitrifying prokaryotes in freshwater lakes. FEMS Microbiology Ecology, 94(10):fiy163.
Welin, Amanda; Weber, Stephen; Hilbi, Hubert (2018). Quantitative Imaging Flow Cytometry of Legionella-Infected Dictyostelium Amoebae Reveals the Impact of Retrograde Trafficking on Pathogen Vacuole Composition. Applied and Environmental Microbiology, 84(11):e00158.
Silva, Marisa O D; Blom, Judith F; Yankova, Yana; Villiger, Jörg; Pernthaler, Jakob (2018). Priming of microbial microcystin degradation in biomass-fed gravity driven membrane filtration biofilms. Systematic and Applied Microbiology, 41(3):221-231.
Ramirez, Kelly S; Knight, Christopher G; de Hollander, Mattias; Brearley, Francis Q; Constantinides, Bede; Cotton, Anne; et al; Crowther, Thomas W; Hartman, Kyle; van der Heijden, Marcel G A (2018). Detecting macroecological patterns in bacterial communities across independent studies of global soils. Nature Microbiology, 3(2):189-196.
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Kovacevic, J; Arguedas-Villa, C; Wozniak, A; Tasara, T; Allen, K J (2013). Examination of food chain-derived L. monocytogenes of different serotypes reveals considerable diversity among inlA genotypes, mutability and adaptation to cold growth. Applied and Environmental Microbiology, 79:1915-1922.
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