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2020

Uehlinger, Christoph (2020). Rez. Jewish Art in Its Late Antique Context, edited by Uzi Leibner and Catherine Hezser. Numen: International Review for the History of Religions, 67(1):79-92.

Unterweger, Christine; Schwarz, Lukas; Jelocnik, Martina; Borel, Nicole; Brunthaler, René; Inic-Kanada, Aleksandra; Marti, Hanna (2020). Isolation of tetracycline-resistant Chlamydia suis from a pig herd affected by reproductive disorders and conjunctivitis. Antibiotics, 9(4):E187.

Ertuğrul, Bülent; Uçkay, İlker; Schöni, Madlaina; Peter-Riesch, Bettina; Lipsky, Benjamin A (2020). Management of diabetic foot infections in the light of recent literature and new international guidelines. Expert Review of Anti-Infective Therapy, 18(4):293-305.

Schoster, Angelika; van Spijk, Julia N; Damborg, P; Moodley, A; Kirchgaessner, C; Hartnack, Sonja; Schmitt, S (2020). The effect of different antimicrobial treatment regimens on the faecal shedding of ESBL-producing Escherichia coli in horses. Veterinary Microbiology, 243:108617.

Szirovicza, Leonora; Hetzel, Udo; Kipar, Anja; Martinez-Sobrido, Luis; Vapalahti, Olli; Hepojoki, Jussi (2020). Snake deltavirus utilizes envelope proteins of different viruses to generate infectious particles. mBio, 11(2):e03250-19.

Kramer, Jos; Özkaya, Özhan; Kümmerli, Rolf (2020). Bacterial siderophores in community and host interactions. Nature Reviews. Microbiology, 18(3):152-163.

Díaz-Sánchez, Adrian Alberto; Meli, Marina L; Obregón Álvarez, Dasiel; Fonseca-Rodríguez, Osvaldo; Cabezas-Cruz, Alejandro; Hofmann-Lehmann, Regina; Corona-González, Belkis (2020). Development and application of a multiplex TaqMan® real-time qPCR assay for the simultaneous detection of Anaplasma marginale and Theileria annulata and molecular characterization of Anaplasma marginale from cattle in Western Cuba. Ticks and Tick-borne Diseases, 11(2):101356.

Shrestha, Neeta; Tobler, Kurt; Uster, Stephanie; Sigrist-Nagy, Romina; Hierweger, Melanie Michaela; Ackermann, Mathias (2020). Ovine herpesvirus 2 encodes a previously unrecognized protein, pOv8.25, that targets mitochondria and triggers apoptotic cell death. Journal of Virology, 94(8):Epub ahead of print.

Bernardi, Sara; Karygianni, Lamprini; Filippi, Andreas; Anderson, Annette Carola; Zürcher, Andrea; Hellwig, Elmar; Vach, Kirstin; Macchiarelli, Guido; Al-Ahmad, Ali (2020). Combining culture and culture-independent methods reveals new microbial composition of halitosis patients' tongue biofilm. MicrobiologyOpen, 9(2):e958.

Winter, S; Meyer-Lindenberg, Andrea; Wolf, G; Reese, S; Nolff, M C (2020). In vitro evaluation of the decontamination effect of cold atmospheric argon plasma on selected bacteria frequently encountered in small animal bite injuries. Journal of Microbiological Methods, 169:105728.

Buttafuoco, Antonino; Michaelsen, Kevin; Tobler, Kurt; Ackermann, Mathias; Fraefel, Cornel; Eichwald, Catherine (2020). Conserved rotavirus NSP5 and VP2 domains interact and affect viroplasm. Journal of Virology, 94(7):e01965-19.

Ballas, Panagiotis; Rückert, Christian; Wagener, Karen; Drillich, Marc; Kämpfer, Peter; Busse, Hans-Jürgen; Ehling-Schulz, Monika (2020). Corynebacterium endometrii sp. nov., isolated from the uterus of a cow with endometritis. International Journal of Systematic and Evolutionary Microbiology, 70(1):146-152.

Kramer, Jos; López Carrasco, Miguel Ángel; Kümmerli, Rolf (2020). Positive linkage between bacterial social traits reveals that homogeneous rather than specialised behavioral repertoires prevail in natural Pseudomonas communities. FEMS Microbiology Ecology, 96(1):fiz185.

Karakus, Umut; Pohl, Marie O; Stertz, Silke (2020). Breaking the convention: Sialoglycan variants, Co-receptors and Alternative Receptors for Influenza A Virus Entry. Journal of Virology, 94(4):e01357-19.

2019

Nur, Selim; Sparber, Florian; Lemberg, Christina; Guiducci, Eva; Schweizer, Tiziano A; Zwicky, Pascale; Becher, Burkhard; LeibundGut-Landmann, Salomé (2019). IL-23 supports host defense against systemic Candida albicans infection by ensuring myeloid cell survival. PLoS Pathogens, 15(12):e1008115.

Banerjee, Samiran; Schlaeppi, Klaus; van der Heijden, Marcel G A (2019). Reply to ‘Can we predict microbial keystones?’. Nature Reviews. Microbiology, 17(3):194.

Kulik, Eva M; Thurnheer, Thomas; Karygianni, Lamprini; Walter, Clemens; Sculean, Anton; Eick, Sigrun (2019). Antibiotic Susceptibility Patterns of Aggregatibacter actinomycetemcomitans and Porphyromonas gingivalis Strains from Different Decades. Antibiotics, 8(4):253.

Hernandez, Matthew M; Fahrny, Audrey; Jayaprakash, Anitha; Gers-Huber, Gustavo; Dillon-White, Marsha; Audigé, Annette; Mulder, Lubbertus C F; Sachidanandam, Ravi; Speck, Roberto F; Simon, Viviana (2019). Impact of suboptimal APOBEC3G neutralization on the emergence of HIV drug resistance in humanized mice. Journal of Virology, 94(5):0.

Kuenzli, Esther; Büdel, Thomas; Bernasconi, Odette J; Schlagenhauf, Patricia; Florek, Peter; Gültekin, Nejla; Hatz, Christoph; Endimiani, Andrea (2019). Intestinal colonisation with multidrug-resistant Enterobacteriaceae: Screening of Swiss military deployed to Kosovo. Journal of Global Antimicrobial Resistance, 19:93-95.

Kavagutti, Vinicius S; Andrei, Adrian-Ştefan; Mehrshad, Maliheh; Salcher, Michaela M; Ghai, Rohit (2019). Phage-centric ecological interactions in aquatic ecosystems revealed through ultra-deep metagenomics. Microbiome, 7:135.

Landolt, Patricia; Stephan, Roger; Stevens, Marc J A; Scherrer, Simone (2019). Three‐reaction high‐resolution melting assay for rapid differentiation of Mycobacterium tuberculosis complex members. MicrobiologyOpen, 8(12):e919.

Work, Thierry M; Dagenais, Julie; Willimann, Anna; Balazs, George; Mansfield, Kate; Ackermann, Mathias (2019). Differences in antibody responses against Chelonid Alphaherpesvirus 5 (ChHV5) suggest differences in virus biology in ChHV5-seropositive green turtles from Hawaii and ChHV5-seropositive green turtles from Florida. Journal of Virology, 94(4):e01658-19.

Wambui, Joseph; Njage, Patrick Murigu Kamau; Tasara, Taurai; Buys, Elna Maria (2019). Meta-analysis and meta-regression indicate dynamic prevalence and moderators of foodborne pathogens in African indigenous fermented milk. Microorganisms, 7(11):E563.

Harro, Janette M; Achermann, Yvonne; Freiberg, Jeffrey A; Allison, Devon L; Brao, Kristen J; Marinos, Dimitrius P; Sanjari, Salar; Leid, Jeff G; Shirtliff, Mark E (2019). Clearance of Staphylococcus aureus from In Vivo Models of Chronic Infection by Immunization Requires Both Planktonic and Biofilm Antigens. Infection and Immunity, 88(1):0.

Borel, Nicole; Horn, Matthias; Greub, Gilbert (2019). . Minutes of the closed meeting, 20 March 2019, Seattle, WA, USAInternational Committee on Systematics of Prokaryotes (ICSP) Subcommittee on the taxonomy of Chlamydiae. International Journal of Systematic and Evolutionary Microbiology, 69(11):3654-3656.

Zurfluh, Katrin; Albini, Sarah; Mattmann, Prisca; Kindle, Patrick; Nüesch-Inderbinen, Magdalena; Stephan, Roger; Vogler, Barbara Renate (2019). Antimicrobial resistant and extended‐spectrum β‐lactamase producing Escherichia coli in common wild bird species in Switzerland. MicrobiologyOpen, 8(11):e845.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Álvarez, Fernando; Ardizzone, Michele; Raffaello, Tommaso (2019). Assessment of genetically modified maize MIR604 for renewal authorisation under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐RX‐013). EFSA Journal, 17(11):e05846.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Álvarez, Fernando; Ardizzone, Michele; De Sanctis, Giacomo; Fernandez Dumont, Antonio; Gennaro, Andrea; Gómez Ruiz, Jose Ángel; Lanzoni, Anna; Neri, Franco Maria; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos (2019). Assessment of genetically modified maize MON 87427 × MON 89034 × MIR162 × MON 87411 and subcombinations, for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2017‐144). EFSA Journal, 17(11):e05848.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Álvarez, Fernando; Ardizzone, Michele; Raffaello, Tommaso (2019). Assessment of genetically modified maize MON 89034 for renewal authorisation under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐RX‐015). EFSA Journal, 17(11):e05845.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Álvarez, Fernando; Ardizzone, Michele; De Sanctis, Giacomo; Devos, Yann; Dumont, Antonio Fernandez; Gennaro, Andrea; Gómez Ruiz, Jose Ángel; Lanzoni, Anna; Neri, Franco Maria; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos; Raffaello, Tommaso (2019). Assessment of genetically modified soybean MON 87751 × MON 87701 × MON 87708 × MON 89788 for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2016‐128). EFSA Journal, 17(11):5847.

Loaiza Puerta, Viviana; Six, Johan; Wittwer, Raphael; van der Heijden, Marcel; Pujol Pereira, Engil Isadora (2019). Comparable bacterial-mediated nitrogen supply and losses under organic reduced tillage and conventional intensive tillage. Soil Biology and Biochemistry, 95:103121.

Salcher, Michaela M; Schaefle, Daniel; Kaspar, Melissa; Neuenschwander, Stefan M; Ghai, Rohit (2019). Evolution in action: habitat transition from sediment to the pelagial leads to genome streamlining in Methylophilaceae. The ISME journal, 13(11):2764-2777.

Silva, Marisa O D; Pernthaler, Jakob (2019). Priming of microcystin degradation in carbon-amended membrane biofilm communities is promoted by oxygen-limited conditions. FEMS Microbiology Ecology, 95(11):157.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Álvarez, Fernando; Ardizzone, Michele; Lanzoni, Anna; Gómez Ruiz, Jose Ángel; De Sanctis, Giacomo; Fernández Dumont, Antonio; Gennaro, Andrea; Neri, Franco Maria (2019). Statement complementing the EFSA Scientific Opinion on application (EFSA‐GMO‐UK‐2006‐34) for authorisation of food and feed containing, consisting of and produced from genetically modified maize 3272. EFSA Journal, 17(11):e05844.

Münz, Christian (2019). Latency and lytic replication in Epstein-Barr virus-associated oncogenesis. Nature Reviews. Microbiology, 17(11):691-700.

Horlbog, Jule Anna; Stevens, Marc J A; Stephan, Roger; Guldimann, Claudia (2019). Global transcriptional response of three highly acid-tolerant field strains of listeria monocytogenes to HCl stress. Microorganisms, 7(10):E455.

Papa, Guido; Venditti, Luca; Arnoldi, Francesca; Schraner, Elisabeth M; Potgieter, Christiaan; Borodavka, Alexander; Eichwald, Catherine; Burrone, Oscar R (2019). Recombinant rotaviruses rescued by reverse genetics reveal the role of NSP5 hyperphosphorylation in the assembly of viral factories. Journal of Virology, 94(1):e01110-e01119.

Rezzoagli, Chiara; Granato, Elisa T; Kümmerli, Rolf (2019). In-vivo microscopy reveals the impact of Pseudomonas aeruginosa social interactions on host colonization. The ISME journal, 13(10):2403-2414.

Schoster, Angelika; Kunz, T; Lauper, M; Graubner, C; Schmitt, S; Weese, J S (2019). Prevalence of Clostridium difficile and Clostridium perfringens in Swiss horses with and without gastrointestinal disease and microbiota composition in relation to Clostridium difficile shedding. Veterinary Microbiology, 239:108433.

Martínez, José L; Arnoldi, Francesca; Schraner, Elisabeth M; Eichwald, Catherine; Silva-Ayala, Daniela; Lee, Eunjoo; Sztul, Elizabeth; Burrone, Óscar R; López, Susana; Arias, Carlos F (2019). The guanine nucleotide exchange factor GBF1 participates in rotavirus replication. Journal of Virology, 93(19):October 2019 Volume 93 Issue 19 e01062-19.

Leong, Cheryl; Schmid, Bettina; Toi, Min Jet; Wang, Joyce; Irudayaswamy, Antony Sagayaraj; Goh, Joleen Peh Zhen; Bosshard, Philipp P; Glatz, Martin; Dawson, Thomas L (2019). Geographical and Ethnic Differences Influence Culturable Commensal Yeast Diversity on Healthy Skin. Frontiers in Microbiology, 10:1891.

Hurley, Daniel; Luque-Sastre, Laura; Parker, Craig T; Huynh, Steven; Eshwar, Athmanya K; Nguyen, Scott V; Andrews, Nicholas; Moura, Alexandra; Fox, Edward M; Jordan, Kieran; Lehner, Angelika; Stephan, Roger; Fanning, Séamus (2019). Whole-genome sequencing-based characterization of 100 Listeria monocytogenes isolates collected from food processing environments over a four-year period. mSphere, 4(4):e00252-19.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Álvarez, Fernando; Ardizzone, Michele; De Sanctis, Giacomo; Fernandez Dumont, Antonio; Gennaro, Andrea; Gómez Ruiz, Jose Ángel; Lanzoni, Anna; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos (2019). Assessment of genetically modified maize MON 87427 × MON 87460 × MON 89034 × MIR162 × NK603 and subcombinations, for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2016‐134). EFSA Journal, 17(8):e05774.

Borel, Nicole; Greub, Gilbert (2019). International Committee on Systematics of Prokaryotes (ICSP) Subcommittee on the taxonomy of Chlamydiae. Minutes of the closed meeting, 5 July 2018, Woudschoten, Zeist, The Netherlands. International Journal of Systematic and Evolutionary Microbiology, 69(8):2606-2608.

Grillová, Linda; Oppelt, Jan; Mikalová, Lenka; Novakova, Marketa; Giacani, Lorenzo; Niesnerová, Anežka; Noda, Angel A; Mechaly, Ariel E; Pospíšilová, Petra; Čejková, Darina; Grange, Philippe A; Dupin, Nicolas; Strnadel, Radim; Chen, Marcus; Denham, Ian; Arora, Natasha; Picardeau, Mathieu; Weston, Christopher; Forsyth, R Allyn; Šmajs, David (2019). Directly Sequenced Genomes of Contemporary Strains of Syphilis Reveal Recombination-Driven Diversity in Genes Encoding Predicted Surface-Exposed Antigens. Frontiers in Microbiology, 10:1691.

Schlaepfer, Erika; Fahrny, Audrey; Gruenbach, Maarja; Kuster, Stefan P; Simon, Viviana; Schreiber, Gideon; Speck, Roberto F (2019). Reply to Hasenkrug et al., "Different Biological Activities of Specific Interferon Alpha Subtypes". mSphere, 4(4):e00275.

Gimeno, Alejandro; Sohlberg, Elina; Pakula, Tiina; Limnell, Jenni; Keller, Beat; Laitila, Arja; Vogelgsang, Susanne (2019). TaqMan qPCR for Quantification of Clonostachys rosea Used as a Biological Control Agent Against Fusarium graminearum. Frontiers in Microbiology, 10:1627.

Kropac, Alexandra C; Eshwar, Athmanya K; Stephan, Roger; Tasara, Taurai (2019). New insights on the role of the pLMST6 plasmid in listeria monocytogenes biocide tolerance and virulence. Frontiers in Microbiology, 10:1538.

Banerjee, Samiran; Walder, Florian; Büchi, Lucie; Meyer, Marcel; Held, Alain Y; Gattinger, Andreas; Keller, Thomas; Charles, Raphael; van der Heijden, Marcel G A (2019). Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots. The ISME journal, 13(7):1722-1736.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Álvarez, Fernando; Ardizzone, Michele; De Sanctis, Giacomo; Fernandez Dumont, Antonio; Gennaro, Andrea; Gómez Ruiz, Jose Ángel; Lanzoni, Anna; Neri, Franco Maria; Paraskevopoulos, Konstantinos; Raffaello, Tommaso (2019). Assessment of genetically modified maize MON 87427 × MON 89034 × MIR162 × NK603 and subcombinations, for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2016‐131). EFSA Journal, 17(7):e05734.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michele; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Álvarez, Fernando; Fernandez Dumont, Antonio; Papadopoulou, Nikoletta; Ardizzone, Michele; Devos, Yann; Gennaro, Andrea; Ruiz Gómez, Jose Ángel; Lanzoni, Anna; Neri, Franco Maria; Paraskevopoulos, Konstantinos; Raffaello, Tommaso; De Sanctis, Giacomo (2019). Assessment of genetically modified soybean MON 87708 × MON 89788 × A5547‐127, for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2016‐135). EFSA Journal, 17(7):e05733.

Bulzu, Paul-Adrian; Andrei, Adrian-Ştefan; Salcher, Michaela M; Mehrshad, Maliheh; Inoue, Keiichi; Kandori, Hideki; Beja, Oded; Ghai, Rohit; Banciu, Horia L (2019). Casting light on Asgardarchaeota metabolism in a sunlit microoxic niche. Nature Microbiology, 4(7):1129-1137.

Callieri, Cristiana; Slabakova, Violeta; Dzhembekova, Nina; Slabakova, Nataliya; Peneva, Elisaveta; Cabello-Yeves, Pedro J; Di Cesare, Andrea; Eckert, Ester M; Bertoni, Roberto; Corno, Gianluca; Salcher, Michaela M; Kamburska, Lyudmila; Bertoni, Filippo; Moncheva, Snejana (2019). The mesopelagic anoxic Black Sea as an unexpected habitat for Synechococcus challenges our understanding of global “deep red fluorescence”. The ISME journal, 13(7):1676-1687.

Rocha Martin, Vanesa Natalin; Lacroix, Christophe; Killer, Jiri; Bunesova, Vera; Voney, Evelyn; Braegger, Christian; Schwab, Clarissa (2019). Cutibacterium avidum is phylogenetically diverse with a subpopulation being adapted to the infant gut. Systematic and Applied Microbiology, 42(4):506-516.

Balaban, Nathalie Q; Helaine, Sophie; Lewis, Kim; Ackermann, Martin; Aldridge, Bree; Andersson, Dan I; Brynildsen, Mark P; Bumann, Dirk; Camilli, Andrew; Collins, James J; Dehio, Christoph; Fortune, Sarah; Ghigo, Jean-Marc; Hardt, Wolf-Dietrich; Harms, Alexander; Heinemann, Matthias; Hung, Deborah T; Jenal, Urs; Levin, Bruce R; Michiels, Jan; Storz, Gisela; Tan, Man-Wah; Tenson, Tanel; Van Melderen, Laurence; Zinkernagel, Annelies (2019). Definitions and guidelines for research on antibiotic persistence. Nature Reviews. Microbiology, 17(7):441-448.

Zeaki, Nikoleta; Johler, Sophia; Skandamis, Panagiotis N; Schelin, Jenny (2019). The role of regulatory mechanisms and environmental parameters in Staphylococcal food poisoning and resulting challenges to risk assessment. Frontiers in Microbiology, 10:1307.

Koliwer-Brandl, Hendrik; Knobloch, Paulina; Barisch, Caroline; Welin, Amanda; Hanna, Nabil; Soldati, Thierry; Hilbi, Hubert (2019). Distinct Mycobacterium marinum phosphatases determine pathogen vacuole phosphoinositide pattern, phagosome maturation, and escape to the cytosol. Cellular Microbiology, 21(6):e13008.

More, Simon J; Bampidis, Vasileios; Benford, Diane; Bragard, Claude; Halldorsson, Thorhallur I; Hernández‐Jerez, Antonio F; Hougaard Bennekou, Susanne; Koutsoumanis, Kostas P; Machera, Kyriaki; Naegeli, Hanspeter; Nielsen, Søren S; Schlatter, Josef R; Schrenk, Dieter; Silano, Vittorio; Turck, Dominique; Younes, Maged; Gundert‐Remy, Ursula; Kass, George E N; Kleiner, Juliane; Rossi, Anna Maria; Serafimova, Rositsa; Reilly, Linda; Wallace, Heather M (2019). Guidance on the use of the threshold of toxicological concern approach in food safety assessment. EFSA Journal, 17(6):e05708.

Onorini, Delia; Donati, Manuela; Marti, Hanna; Biondi, Roberta; Levi, Aurora; Nufer, Lisbeth; Prähauser, Barbara; Rigamonti, Sara; Vicari, Nadia; Borel, Nicole (2019). The influence of centrifugation and incubation temperatures on various veterinary and human chlamydial species. Veterinary Microbiology, 233:11-20.

Arnold, Isabelle C; Zhang, Xiaozhou; Artola-Boran, Mariela; Fallegger, Angela; Sander, Peter; Johansen, Pål; Müller, Anne (2019). BATF3-dependent dendritic cells drive both effector and regulatory T-cell responses in bacterially infected tissues. PLoS Pathogens, 15(6):e1007866.

Aguilar-Rodríguez, José; Fares, Mario A; Wagner, Andreas (2019). Chaperonin overproduction and metabolic erosion caused by mutation accumulation in Escherichia coli. FEMS Microbiology Letters, 366(10):fnz121.

Tall, Ben D; Gopinath, Gopal; Gangiredla, Jayanthi; Patel, Isha R; Fanning, Séamus; Lehner, Angelika (2019). Cronobacter Species. In: Doyle, MP; Diez-Gonzales, R; Hill, C. Food Microbiology: Fundamentals and Frontiers. Washington, 389-414.

Pham, Van Thanh; Chassard, Christophe; Rifa, Etienne; Braegger, Christian; Geirnaert, Annelies; Rocha Martin, Vanesa Natalin; Lacroix, Christophe (2019). Lactate Metabolism Is Strongly Modulated by Fecal Inoculum, pH, and Retention Time in PolyFermS Continuous Colonic Fermentation Models Mimicking Young Infant Proximal Colon. mSystems, 4(4):e00264.

Wambui, Joseph; Stephan, Roger (2019). Relevant aspects of Clostridium estertheticum as a specific spoilage organism of vacuum-packed meat. Microorganisms, 7(5):E142.

Ghazaryan, Hrachuhi; Babloyan, Ara; Sarkissian, Ashot; Davtyan, Karapet; Berger, Christoph (2019). Respiratory syncytial and influenza virus detecting rapid tests in children younger than 5 years of age in Armenia. Journal of Infection in Developing Countries, 13(05.1):075S-080S.

Kuratli, Jasmin; Borel, Nicole (2019). Perspective: Water-Filtered Infrared-A-Radiation (wIRA) – novel treatment options for chlamydial infections? Frontiers in Microbiology, 10:1053.

Carroll, Laura M; Gaballa, Ahmed; Guldimann, Claudia; Sullivan, Genevieve; Henderson, Lory O; Wiedmann, Martin (2019). Identification of novel mobilized colistin resistance gene mcr-9 in a multidrug-resistant, colistin-susceptible salmonella enterica serotype typhimurium isolate. mBio, 10(3):e00853-19.

Uehlinger, Christoph (2019). Rez. A. Lykke (Hg.), Macht des Geldes - Macht der Bilder. Kolloquium zur Ikonographie auf Münzen im ostmediterranen Raum in hellenistisch-römischer Zeit (ADPV 41), 2013; A. Lykke, Reign and Religion in Palestine. The Use of Sacred Iconography in Jewish Coinage (ADPV 2015), 2015, in: Bibliotheca Orientalis 76 (3-4, 2019) 397-406. Bibliotheca orientalis, 76(3-4):397-406.

Muchaamba, Francis; Eshwar, Athmanya K; Stevens, Marc J A; von Ah, Ueli; Tasara, Taurai (2019). Variable carbon source utilization, stress resistance, and virulence profiles among Listeria monocytogenes strains responsible for Listeriosis outbreaks in Switzerland. Frontiers in Microbiology, 10:957.

Ziegler, Matthias; Kent, D; Stephan, Roger; Guldimann, Claudia (2019). Growth potential of Listeria monocytogenes in twelve different types of RTE salads: Impact of food matrix, storage temperature and storage time. International Journal of Food Microbiology, 296:83-92.

Islam, Md Mominul; Jelocnik, Martina; Anstey, Susan; Kaltenboeck, Bernhard; Borel, Nicole; Timms, Peter; Polkinghorne, Adam (2019). In vitro analysis of genetically distinct Chlamydia pecorum isolates reveals key growth differences in mammalian epithelial and immune cells. Veterinary Microbiology, 232:22-29.

Chatterjee, Bithi; Deng, Yun; Holler, Angelika; Nunez, Nicolas; Azzi, Tarik; Vanoaica, Liliana Danusia; Müller, Anne; Zdimerova, Hana; Antsiferova, Olga; Zbinden, Andrea; Capaul, Riccarda; Dreyer, Johannes H; Nadal, David; Becher, Burkhard; Robinson, Mark D; Stauss, Hans; Münz, Christian (2019). CD8+ T cells retain protective functions despite sustained inhibitory receptor expression during Epstein-Barr virus infection in vivo. PLoS Pathogens, 15(5):e1007748.

Hohl, Michael; Remm, Sille; Eskandarian, Haig A; Dal Molin, Michael; Arnold, Fabian M; Hürlimann, Lea M; Krügel, Andri; Fantner, Georg E; Sander, Peter; Seeger, Markus A (2019). Increased drug permeability of a stiffened mycobacterial outer membrane in cells lacking MFS transporter Rv1410 and lipoprotein LprG. Molecular Microbiology, 111(5):1263-1282.

Wagner, Karoline; Mancini, Stefano; Ritter, Claudia; Böttger, Erik C; Keller, Peter M (2019). Evaluation of the AID AmpC line probe assay for molecular detection of AmpC-producing Enterobacterales. Journal of Global Antimicrobial Resistance, 19:8-13.

Silva, Marisa O D; Desmond, Peter; Derlon, Nicolas; Morgenroth, Eberhard; Pernthaler, Jakob (2019). Source Community and Assembly Processes Affect the Efficiency of Microbial Microcystin Degradation on Drinking Water Filtration Membranes. Frontiers in Microbiology, 10:843.

Bluemel, Sena; Wang, Lirui; Kuelbs, Claire; Moncera, Kelvin; Torralba, Manolito; Singh, Harinder; Fouts, Derrick E; Schnabl, Bernd (2019). Intestinal and hepatic microbiota changes associated with chronic ethanol administration in mice. Gut Microbes:Epub ahead of print.

Hetzel, Udo; Szirovicza, Leonóra; Smura, Teemu; Prähauser, Barbara; Vapalahti, Olli; Kipar, Anja; Hepojoki, Jussi (2019). Identification of a novel deltavirus in Boa Constrictors. mBio, 10(2):e00014-e00019.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Ardizzone, Michele; Álvarez, Fernando; Fernandez Dumont, Antonio; Gennaro, Andrea; Lanzoni, Anna; Neri, Franco Maria; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos; De Sanctis, Giacomo; Raffaello, Tommaso; Federici, Silvia; Koukoulanaki, Marina (2019). Assessment of genetically modified maize Bt11 × MIR162 × MIR604 × 1507 × 5307 × GA21 and subcombinations, for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐DE‐2011‐103). EFSA Journal, 17(4):e05635.

Sauvala, Mikaela; Laaksonen, Sauli; Laukkanen-Ninios, Riikka; Jalava, Katri; Stephan, Roger; Fredriksson-Ahomaa, Maria (2019). Microbial contamination of moose (Alces alces) and white-tailed deer (Odocoileus virginianus) carcasses harvested by hunters. Food Microbiology, 78:82-88.

Andrei, Adrian-Ştefan; Salcher, Michaela M; Mehrshad, Maliheh; Rychtecký, Pavel; Znachor, Petr; Ghai, Rohit (2019). Niche-directed evolution modulates genome architecture in freshwater Planctomycetes. The ISME journal, 13(4):1056-1071.

Bommana, Sankhya; Jelocnik, Martina; Borel, Nicole; Marsh, Ian; Carver, Scott; Polkinghorne, Adam (2019). The limitations of commercial serological assays for detection of chlamydial infections in Australian livestock. Journal of Medical Microbiology, 68(4):627-632.

Altobelli, Aleksandra; Bauer, Michael; Velez, Karelia; Cover, Timothy L; Müller, Anne (2019). VacA Targets Myeloid Cells in the Gastric Lamina Propria To Promote Peripherally Induced Regulatory T-Cell Differentiation and Persistent Infection. mBio, 10(2):e00261-19.

Zurfluh, Katrin; Zogg, Anna Lena; Klumpp, Jochen; Schmitt, Sarah; Stephan, Roger; Nüesch-Inderbinen, Magdalena (2019). Complete nucleotide sequences of six blaCTX-M-1-encoding plasmids from Escherichia coli isolated from urinary tract and wound infections in dogs. Journal of Global Antimicrobial Resistance, 16:117-119.

More, Simon John; Bampidis, Vasileios; Benford, Diane; Bennekou, Susanne Hougaard; Bragard, Claude; Halldorsson, Thorhallur Ingi; Hernández‐Jerez, Antonio F; Koutsoumanis, Konstantinos; Naegeli, Hanspeter; Schlatter, Josef R; Silano, Vittorio; Nielsen, Søren Saxmose; Schrenk, Dieter; Turck, Dominique; Younes, Maged; Benfenati, Emilio; Castle, Laurence; Cedergreen, Nina; Hardy, Anthony; Laskowski, Ryszard; Leblanc, Jean Charles; Kortenkamp, Andreas; Ragas, Ad; Posthuma, Leo; Svendsen, Claus; Solecki, Roland; Testai, Emanuela; Dujardin, Bruno; Kass, George E N; et al (2019). Guidance on harmonised methodologies for human health, animal health and ecological risk assessment of combined exposure to multiple chemicals. EFSA Journal, 17(3):e05634.

Damania, Blossom; Münz, Christian (2019). Immunodeficiencies that predispose to pathologies by human oncogenic γ-herpesviruses. FEMS Microbiology Reviews, 43(2):181-192.

Kombrink, Anja; Tayyrov, Annageldi; Essig, Andreas; Stöckli, Martina; Micheller, Sebastian; Hintze, John; van Heuvel, Yasemin; Dürig, Natalia; Lin, Chia-Wei; Kallio, Pauli T; Aebi, Markus; Künzler, Markus (2019). Induction of antibacterial proteins and peptides in the coprophilous mushroom Coprinopsis cinerea in response to bacteria. The ISME journal, 13(3):588-602.

Vogler, Barbara; Hartnack, Sonja; Ziegler, Ute; Lelli, Davide; Vögtlin, Andrea; Hoop, Richard; Albini, Sarah (2019). Resource-effective serosurveillance for the detection of West Nile Virus in Switzerland using abattoir samples of free-range laying hens. Vector Borne and Zoonotic Diseases, 19(3):222-224.

Hochstrasser, Ramon; Kessler, Aline; Sahr, Tobias; Simon, Sylvia; Schell, Ursula; Gomez-Valero, Laura; Buchrieser, Carmen; Hilbi, Hubert (2019). The pleotropic Legionella transcription factor LvbR links the Lqs and c-di-GMP regulatory networks to control biofilm architecture and virulence. Environmental Microbiology, 21(3):1035-1053.

Sparber, Florian; De Gregorio, Corinne; Steckholzer, Simone; Ferreira, Filipa M; Dolowschiak, Tamas; Ruchti, Fiorella; Kirchner, Florian R; Mertens, Sarah; Prinz, Immo; Joller, Nicole; Buch, Thorsten; Glatz, Martin; Sallusto, Federica; LeibundGut-Landmann, Salomé (2019). The skin commensal yeast malassezia triggers a type 17 response that coordinates anti-fungal immunity and exacerbates skin inflammation. Cell Host & Microbe, 25(3):389-403.e6.

Pitsch, Gianna; Bruni, Estelle Patricia; Forster, Dominik; Qu, Zhishuai; Sonntag, Bettina; Stoeck, Thorsten; Posch, Thomas (2019). Seasonality of Planktonic Freshwater Ciliates: Are Analyses Based on V9 Regions of the 18S rRNA Gene Correlated With Morphospecies Counts? Frontiers in Microbiology, 10:248.

Schlaepfer, Erika; Fahrny, Audrey; Gruenbach, Maarja; Kuster, Stefan P; Simon, Viviana; Schreiber, Gideon; Speck, Roberto F (2019). Dose-Dependent Differences in HIV Inhibition by Different Interferon Alpha Subtypes While Having Overall Similar Biologic Effects. mSphere, 4(1):e00637-18.

Buckley, Catherine M; Heath, Victoria L; Guého, Aurélie; Bosmani, Cristina; Knobloch, Paulina; Sikakana, Phumzile; Personnic, Nicolas; Dove, Stephen K; Michell, Robert H; Meier, Roger; Hilbi, Hubert; Soldati, Thierry; Insall, Robert H; King, Jason S (2019). PIKfyve/Fab1 is required for efficient V-ATPase and hydrolase delivery to phagosomes, phagosomal killing, and restriction of Legionella infection. PLoS Pathogens, 15(2):e1007551.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Álvarez, Fernando; Ardizzone, Michele; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos (2019). Assessment of genetically modified oilseed rape T45 for renewal of authorisation under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐RX‐012). EFSA Journal, 17(2):e05597.

Romanens, Edwina; Freimüller Leischtfeld, Susette; Volland, Andrea; Stevens, Marc J A; Krähenmann, Ursina; Isele, Désirée; Fischer, Birgit; Meile, Leo; Miescher Schwenninger, Susanne (2019). Screening of lactic acid bacteria and yeast strains to select adapted anti-fungal co-cultures for cocoa bean fermentation. International Journal of Food Microbiology, 290:262-272.

Moura, Alexandra; Disson, Olivier; Lavina, Morgane; Thouvenot, Pierre; Huang, Lei; Leclercq, Alexandre; Fredriksson-Ahomaa, Maria; Eshwar, Athmanya K; Stephan, Roger; Lecuit, Marc (2019). Atypical hemolytic Listeria innocua isolates are virulent, albeit less than Listeria monocytogenes. Infection and Immunity, 87(4):e00758-18.

Murer, Anita; Rühl, Julia; Zbinden, Andrea; Capaul, Riccarda; Hammerschmidt, Wolfgang; Chijioke, Obinna; Münz, Christian (2019). MicroRNAs of Epstein-Barr Virus Attenuate T-Cell-Mediated Immune Control In Vivo. mBio, 10:e01941-18.

Spiewak, Helena L; Shastri, Sravanthi; Zhang, Lili; Schwager, Stephan; Eberl, Leo; Vergunst, Annette C; Thomas, Mark S (2019). Burkholderia cenocepacia utilizes a type VI secretion system for bacterial competition. MicrobiologyOpen:e774.

Rocha Martin, Vanesa Natalin; Schwab, Clarissa; Krych, Lukasz; Voney, Evelyn; Geirnaert, Annelies; Braegger, Christian; Lacroix, Christophe (2019). Colonization of Cutibacterium avidum during infant gut microbiota establishment. FEMS Microbiology Ecology, 95(1):fiy215.

Kindle, Patrick; Nüesch-Inderbinen, Magdalena; Cernela, Nicole; Stephan, Roger (2019). Detection, isolation, and characterization of Shiga Toxin-Producing Escherichia coli in flour. Journal of Food Protection, 82(1):164-167.

Toyofuku, Masanori; Nomura, Nobuhiko; Eberl, Leo (2019). Types and origins of bacterial membrane vesicles. Nature Reviews. Microbiology, 17(1):13-24.

Grabinger, Thomas; Glaus Garzon, Jesus Francisco; Hausmann, Martin; Geirnaert, Annelies; Lacroix, Christophe; Hennet, Thierry (2019). Alleviation of Intestinal Inflammation by Oral Supplementation With 2-Fucosyllactose in Mice. Frontiers in Microbiology, 10:1385.

Fernández, Noemí; Cabrera, Juan J; Varadarajan, Adithi R; Lutz, Stefanie; Ledermann, Raphael; Roschitzki, Bernd; Eberl, Leo; Bedmar, Eulogio J; Fischer, Hans-Martin; Pessi, Gabriella; Ahrens, Christian H; Mesa, Socorro (2019). An Integrated Systems Approach Unveils New Aspects of Microoxia-Mediated Regulation in Bradyrhizobium diazoefficiens. Frontiers in Microbiology, 10:924.

Bağcıoğlu, M; Fricker, M; Johler, Sophia; Ehling-Schulz, M (2019). Detection and identification of Bacillus cereus, Bacillus cytotoxicus, Bacillus thuringiensis, Bacillus mycoides and Bacillus weihenstephanensis via machine learning based FTIR Spectroscopy. Frontiers in Microbiology, 10:902.

Mansfeldt, Cresten; Achermann, Stefan; Men, Yujie; Walser, Jean-Claude; Villez, Kris; Joss, Adriano; Johnson, David R; Fenner, Kathrin (2019). Microbial residence time is a controlling parameter of the taxonomic composition and functional profile of microbial communities. The ISME journal, 13(6):1589-1601.

Allemann, Aurélie; Kraemer, Julia G; Korten, Insa; Ramsey, Kathryn; Casaulta, Carmen; SCILD Study Group; Wüthrich, Daniel; Ramette, Alban; Endimiani, Andrea; Latzin, Philipp; Hilty, Markus (2019). Nasal Resistome Development in Infants With Cystic Fibrosis in the First Year of Life. Frontiers in Microbiology, 10:212.

Poeker, Sophie A; Lacroix, Christophe; de Wouters, Tomas; Spalinger, Marianne R; Scharl, Michael; Geirnaert, Annelies (2019). Stepwise Development of an in vitro Continuous Fermentation Model for the Murine Caecal Microbiota. Frontiers in Microbiology, 10:1166.

Calderón, Claudia E; Tienda, Sandra; Heredia-Ponce, Zaira; Arrebola, Eva; Cárcamo-Oyarce, Gerardo; Eberl, Leo; Cazorla, Francisco M (2019). The Compound 2-Hexyl, 5-Propyl Resorcinol Has a Key Role in Biofilm Formation by the Biocontrol Rhizobacterium Pseudomonas chlororaphis PCL1606. Frontiers in Microbiology, 10:396.

Delecluse, Susanne; Tsai, Ming-Han; Shumilov, Anatoliy; Bencun, Maja; Arrow, Sebastian; Beshirova, Aisha; Cottignies-Calamarte, Andréa; Lasitschka, Felix; Bulut, Olcay Cem; Münz, Christian; Zeier, Martin; Behrends, Uta; Delecluse, Henri-Jacques (2019). The Epstein-Barr virus induces the expression of the LPAM-1 integrin in B-cells in vitro and in vivo. Journal of Virology, 93(5):e01618-18.

2018

Weber, Stephen; Steiner, Bernhard; Welin, Amanda; Hilbi, Hubert (2018). Legionella-Containing Vacuoles Capture PtdIns(4)-Rich Vesicles Derived from the Golgi Apparatus. mBio, 9(6):pii: e02420-18.

Bourras, Salim; Praz, Coraline R; Spanu, Pietro D; Keller, Beat (2018). Cereal powdery mildew effectors: a complex toolbox for an obligate pathogen. Current Opinion in Microbiology, 46:26-33.

Hartman, Kyle; van der Heijden, Marcel G A; Wittwer, Raphaël A; Banerjee, Samiran; Walser, Jean-Claude; Schlaeppi, Klaus (2018). Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming. Microbiome, 6(1):14.

Tackmann, Janko; Arora, Natasha; Schmidt, Thomas Sebastian Beedikt; Rodrigues, João Frederico Matias; von Mering, Christian (2018). Ecologically informed microbial biomarkers and accurate classification of mixed and unmixed samples in an extensive cross-study of human body sites. Microbiome, 6:192.

Peterhans, Sophie; Stevens, Marc J A; Nüesch-Inderbinen, Magdalena; Schmitt, Sarah; Stephan, R; Zurfluh, Katrin (2018). First report of a blaNDM-5-harbouring Escherichia coli ST167 isolated from a wound infection in a dog in Switzerland. Journal of Global Antimicrobial Resistance, 15:226-227.

Mehrshad, Maliheh; Salcher, Michaela M; Okazaki, Yusuke; Nakano, Shin-ichi; Šimek, Karel; Andrei, Adrian-Stefan; Ghai, Rohit (2018). Hidden in plain sight—highly abundant and diverse planktonic freshwater Chloroflexi. Microbiome, 6(1):176.

Sirová, Dagmara; Bárta, Jiří; Šimek, Karel; Posch, Thomas; Pech, Jiří; Stone, James; Borovec, Jakub; Adamec, Lubomír; Vrba, Jaroslav (2018). Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant. Microbiome, 6(1):225.

San Millan, Alvaro; Toll-Riera, Macarena; Qi, Qin; Betts, Alex; Hopkinson, Richard J; McCullagh, James; MacLean, R Craig (2018). Integrative analysis of fitness and metabolic effects of plasmids in Pseudomonas aeruginosa PAO1. The ISME journal, 12(12):3014-3024.

Granato, Elisa T; Ziegenhain, Christoph; Marvig, Rasmus L; Kümmerli, Rolf (2018). Low spatial structure and selection against secreted virulence factors attenuates pathogenicity in Pseudomonas aeruginosa. The ISME journal, 12(12):2907-2918.

Onjong, Hillary A; Ngayo, Musa Otieno; Mwaniki, Mercy; Wambui, Joseph; Njage, P M K (2018). Microbiological safety of fresh Tilapia (Oreochromis niloticus) from Kenyan fresh water fish value chains. Journal of Food Protection, 81(12):1973-1981.

Knauf, Sascha; Gogarten, Jan F; Schuenemann, Verena J; De Nys, Hélène M; et al (2018). Nonhuman primates across sub-Saharan Africa are infected with the yaws bacterium Treponema pallidum subsp. pertenue. Emerging Microbes and Infections, 7(1):157.

Koutsoumanis, Kostas; Allende, Ana; Alvarez‐Ordóñez, Avelino; Bolton, Declan; Bover‐Cid, Sara; Chemaly, Marianne; Davies, Robert; De Cesare, Alessandra; Herman, Lieve; Hilbert, Friederike; Lindqvist, Roland; Nauta, Maarten; Peixe, Luisa; Ru, Giuseppe; Simmons, Marion; Skandamis, Panagiotis; Suffredini, Elisabetta; Cacciò, Simone; Chalmers, Rachel; Deplazes, Peter; Devleesschauwer, Brecht; Innes, Elisabeth; Romig, Thomas; van der Giessen, Joke; Hempen, Michaela; Van der Stede, Yves; Robertson, Lucy (2018). Public health risks associated with food‐borne parasites. EFSA Journal, 16(12):5495.

Gomes, Margarida C; Tasrini, Yara; Subramoni, Sujatha; Agnoli, Kirsty; Feliciano, Joana R; Eberl, Leo; Sokol, Pamela; O'Callaghan, David; Vergunst, Annette C (2018). The afc antifungal activity cluster, which is under tight regulatory control of ShvR, is essential for transition from intracellular persistence of Burkholderia cenocepacia to acute pro-inflammatory infection. PLoS Pathogens, 14(12):e1007473.

Keller, Annika; Nuvolone, Mario; Abakumova, Irina; Chincisan, Andra; Reimann, Regina; Avar, Merve; Heinzer, Daniel; Hornemann, Simone; Wagner, Josephin; Kirschenbaum, Daniel; Voigt, Fabian F; Zhu, Caihong; Regli, Luca; Helmchen, Fritjof; Aguzzi, Adriano (2018). Prion pathogenesis is unaltered in a mouse strain with a permeable blood-brain barrier. PLoS Pathogens, 14(11):e1007424.

Personnic, Nicolas; Striednig, Bianca; Hilbi, Hubert (2018). Legionella quorum sensing and its role in pathogen-host interactions. Current Opinion in Microbiology, 41:29-35.

Okazaki, Yusuke; Salcher, Michaela M; Callieri, Cristiana; Nakano, Shin-ichi (2018). The Broad Habitat Spectrum of the CL500-11 Lineage (Phylum Chloroflexi), a Dominant Bacterioplankton in Oxygenated Hypolimnia of Deep Freshwater Lakes. Frontiers in Microbiology, 9:2891.

Yakimovich, Artur; Witte, Robert; Andriasyan, Vardan; Georgi, Fanny; Greber, Urs F (2018). Label-Free Digital Holo-tomographic Microscopy Reveals Virus-Induced Cytopathic Effects in Live Cells. mSphere, 3(6):e00599-18.

Kuratli, Jasmin; Pesch, Theresa; Marti, Hanna; Leonard, Cory Ann; Blenn, Christian; Torgerson, Paul R; Borel, Nicole (2018). Water filtered infrared A and visible light (wIRA/VIS) irradiation reduces chlamydia trachomatis infectivity independent of targeted cytokine inhibition. Frontiers in Microbiology, 9:2757.

Hepojoki, Jussi; Hepojoki, Satu; Smura, Teemu; Szirovicza, Leonóra; Dervas, Eva; Prähauser, Barbara; Nufer, Lisbeth; Schraner, Elisabeth M; Vapalahti, Olli; Kipar, Anja; Hetzel, Udo (2018). Characterization of Haartman Institute snake virus-1 (HISV-1) and HISV-like viruses—The representatives of genus Hartmanivirus, family Arenaviridae. PLoS Pathogens, 14(11):e1007415.

Meyer Sauteur, Patrick M; de Bruijn, Adrianus C J M; Graça, Catarina; Tio-Gillen, Anne P; Estevão, Silvia C; Hoogenboezem, Theo; Hendriks, Rudi W; Berger, Christoph; Jacobs, Bart C; van Rossum, Annemarie M C; Huizinga, Ruth; Unger, Wendy W J (2018). Antibodies to protein but not glycolipid structures are important for host defense against. Infection and Immunity, 87(2):e00663-18.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Álvarez, Fernando; Ardizzone, Michele; Paraskevopoulos, Konstantinos (2018). Assessment of genetically modified LLCotton25 for renewal of authorisation under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐RX‐010). EFSA Journal, 16(11):5473.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Álvarez, Fernando; Ardizzone, Michele; Paraskevopoulos, Konstantinos (2018). Assessment of genetically modified soybean MON 89788 for renewal of authorisation under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐RX‐011). EFSA Journal, 16(11):5468.

García-Martín, Ana B; Perreten, Vincent; Rossano, Alexandra; Schmitt, Sarah; Nathues, Heiko; Zeeh, Friederike (2018). Predominance of a macrolide-lincosamide-resistant Brachyspira hyodysenteriae of sequence type 196 in Swiss pig herds. Veterinary Microbiology, 226:97-102.

Heini, Nicole; Stephan, R; Ehling-Schulz, Monika; Johler, Sophia (2018). Characterization of Bacillus cereus group isolates from powdered food products. International Journal of Food Microbiology, 283:59-64.

Neuenschwander, Stefan M; Ghai, Rohit; Pernthaler, Jakob; Salcher, Michaela M (2018). Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria. The ISME journal, 12:185-198.

Bardelli, Marco; Frontzek, Karl; Simonelli, Luca; Hornemann, Simone; Pedotti, Mattia; Mazzola, Federica; Carta, Manfredi; Eckhardt, Valeria; D’Antuono, Rocco; Virgilio, Tommaso; González, Santiago F; Aguzzi, Adriano; Varani, Luca (2018). A bispecific immunotweezer prevents soluble PrP oligomers and abolishes prion toxicity. PLoS Pathogens, 14(10):e1007335.

Inglin, Raffael C; Delbrück, Alessia I; Fässler, Benjamin; Siebenmann, Katharina E; Lacroix, Christophe; Stevens, Marc J A; Meile, Leo (2018). An approach to select Lactobacillus isolates as protective cultures for food fermentations. Journal of food safety, 38(5):e12483.

Alfreider, Albin; Grimus, Victoria; Luger, Martin; Ekblad, Anja; Salcher, Michaela M; Summerer, Monika (2018). Autotrophic carbon fixation strategies used by nitrifying prokaryotes in freshwater lakes. FEMS Microbiology Ecology, 94(10):fiy163.

Probst, Maraike; Gómez-Brandón, María; Bardelli, Tommaso; Egli, Markus; Insam, Heribert; Ascher-Jenull, Judith (2018). Bacterial communities of decaying Norway spruce follow distinct slope exposure and time-dependent trajectories. Environmental Microbiology, 20(10):3657-3670.

Butaitė, Elena; Kramer, Jos; Wyder, Stefan; Kümmerli, Rolf (2018). Environmental determinants of pyoverdine production, exploitation and competition in natural Pseudomonas communities. Environmental Microbiology, 20(10):3629-3642.

Nüesch-Inderbinen, Magdalena; Morach, Marina; Cernela, Nicole; Althaus, Denise; Jost, Marianne; Mäusezahl, Mirjam; Bloomberg, Guido; Stephan, R (2018). Serotypes and virulence profiles of Shiga toxin-producing Escherichia coli strains isolated during 2017 from human infections in Switzerland. International Journal of Medical Microbiology : IJMM, 308(7):933-939.

Cernikova, Lenka; Faso, Carmen; Hehl, Adrian B (2018). Five facts about Giardia lamblia. PLoS Pathogens, 14(9):e1007250.

Schiavi, E; Plattner, S; Rodriguez-Perez, N; Barcik, W; Frei, R; Ferstl, R; Kurnik-Lucka, M; Groeger, D; Grant, R; Roper, J; Altmann, F; van Sinderen, D; Akdis, C A; O'Mahony, L (2018). Exopolysaccharide from Bifidobacterium longum subsp. longum 35624™ modulates murine allergic airway responses. Beneficial Microbes, 9(5):761-773.

Roulin, Pascal S; Murer, Luca P; Greber, Urs F (2018). A single point mutation in the rhinovirus 2B protein reduces the requirement for phosphatidylinositol 4-kinase class 3beta in viral replication. Journal of Virology, 92(23):e01462-18.

Hornok, Sándor; Szőke, Krisztina; Estók, Péter; Krawczyk, Aleksandra; Haarsma, Anne-Jifke; Kováts, Dávid; Boldogh, Sándor A; Morandini, Pál; Szekeres, Sándor; Takács, Nóra; Kontschán, Jenő; Meli, Marina L; Fernández de Mera, Isabel G; de la Fuente, José; Gyuranecz, Miklós; Sulyok, Kinga M; Weibel, Beatrice; Gönczi, Enikő; de Bruin, Arnout; Sprong, Hein; Hofmann-Lehmann, Regina (2018). Assessing bat droppings and predatory bird pellets for vector-borne bacteria: molecular evidence of bat-associated Neorickettsia sp. in Europe. Antonie van Leeuwenhoek, 111(9):1707-1717.

Banerjee, Samiran; Schlaeppi, Klaus; van der Heijden, Marcel G A (2018). Keystone taxa as drivers of microbiome structure and functioning. Nature Reviews. Microbiology, 16(9):567-576.

Hornok, S; Baneth, G; Grima, A; Takács, N; Kontschán, J; Meli, Marina L; Suter, V; Salant, H; Farkas, R; Hofmann-Lehmann, Regina (2018). Molecular investigations of cat fleas (Ctenocephalides felis) provide the first evidence of Rickettsia felis in Malta and Candidatus Rickettsia senegalensis in Israel. New Microbes and New Infections, 25:3-6.

Wambui, Joseph; Tasara, Taurai; Njage, P M K; Stephan, R (2018). Species distribution and antimicrobial profiles of Enterococcus spp. isolates from Kenyan small and medium enterprise slaughterhouses. Journal of Food Protection, 81(9):1445-1449.

Carrión, Víctor J; Cordovez, Viviane; Tyc, Olaf; Etalo, Desalegn W; de Bruijn, Irene; de Jager, Victor C L; Medema, Marnix H; Eberl, Leo; Raaijmakers, Jos M (2018). Involvement of Burkholderiaceae and sulfurous volatiles in disease-suppressive soils. The ISME journal, 12(9):2307-2321.

Zurfluh, Katrin; Stevens, Marc J A; Stephan, R; Nüesch-Inderbinen, Magdalena (2018). Complete and assembled genome sequence of an NDM-5 and CTX-M-15 producing Escherichia coli sequence type 617 isolated from wastewater in Switzerland. Journal of Global Antimicrobial Resistance, 15:105-106.

Johler, Sophia; Kalbhenn, Eva M; Heini, Nicole; Brodmann, Peter; Gautsch, Sylvia; Bağcioğlu, Murat; Contzen, Matthias; Stephan, R; Ehling-Schulz, Monika (2018). Enterotoxin production of Bacillus thuringiensis isolates from biopesticides, foods, and outbreaks. Frontiers in Microbiology, 9:1915.

Ujmajuridze, Aleksandre; Chanishvili, Nina; Goderdzishvili, Marina; Leitner, Lorenz; Mehnert, Ulrich; Chkhotua, Archil; Kessler, Thomas M; Sybesma, Wilbert (2018). Adapted Bacteriophages for Treating Urinary Tract Infections. Frontiers in Microbiology, 9:1832.

Naegeli, Hanspeter; Birch, Andrew Nicholas; Casacuberta, Josep; De Schrijver, Adinda; Gralak, Mikołaj Antoni; Jones, Huw; Manachini, Barbara; Messéan, Antoine; Nielsen, Elsa Ebbesen; Nogué, Fabien; Robaglia, Christophe; Rostoks, Nils; Sweet, Jeremy; Tebbe, Christoph; Visioli, Francesco; Wal, Jean‐Michel; Álvarez, Fernando; Ardizzone, Michele; Fernandez Dumont, Antonio; Gómez Ruiz, José Ángel; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos (2018). Assessment of genetically modified soybean MON 87751 for food and feed uses under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2014‐121). EFSA Journal, 16(8):e05346.

Kessi, Janine; Hörtensteiner, Stefan (2018). Inhibition of bacteriochlorophyll biosynthesis in the purple phototrophic bacteria Rhodospirillumrubrum and Rhodobacter capsulatus grown in the presence of a toxic concentration of selenite. BMC Microbiology, 18(1):81.

Eshwar, Athmanya Konegadde; Wolfrum, Nina; Stephan, R; Fanning, Séamus; Lehner, Angelika (2018). Interaction of matrix metalloprotease-9 and Zpx in Cronobacter turicensis LMG 23827T mediated infections in the zebrafish model. Cellular Microbiology, 20(11):e12888.

Marti, Hanna; Borel, Nicole; Dean, Deborah; Leonard, Cory A (2018). Evaluating the antibiotic susceptibility of chlamydia – new approaches for in vitro assays. Frontiers in Microbiology, 9:1414.

Naegeli, Hanspeter; Birch, Andrew Nicholas; Casacuberta, Josep; De Schrijver, Adinda; Gralak, Mikołaj Antoni; Guerche, Philippe; Jones, Huw; Manachini, Barbara; Messéan, Antoine; Nielsen, Elsa Ebbesen; Nogué, Fabien; Robaglia, Christophe; Rostoks, Nils; Sweet, Jeremy; Tebbe, Christoph; Visioli, Francesco; Wal, Jean‐Michel; Ardizzone, Michele; Fernandez‐Dumont, Antonio; Gennaro, Andrea; Gómez Ruiz, José Ángel; Lanzoni, Anna; Neri, Franco Maria; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos (2018). Assessment of genetically modified cotton GHB614 × T304‐40 × GHB119 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2014‐122). EFSA Journal, 16(7):e05349.

Naegeli, Hanspeter; Birch, Andrew Nicholas; Casacuberta, Josep; De Schrijver, Adinda; Gralak, Mikołaj Antoni; Guerche, Philippe; Jones, Huw; Manachini, Barbara; Messéan, Antoine; Nielsen, Elsa Ebbesen; Nogué, Fabien; Robaglia, Christophe; Rostoks, Nils; Sweet, Jeremy; Tebbe, Christoph; Visioli, Francesco; Wal, Jean‐Michel; Álvarez, Fernando; Ardizzone, Michele; De Sanctis, Giacomo; Fernandez Dumont, Antonio; Ruiz Gómez, José Ángel; Lanzoni, Anna; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos (2018). Assessment of genetically modified maize 1507 × NK603 for renewal of authorisation under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐RX‐008). EFSA Journal, 16(7):e05347-.

Naegeli, Hanspeter; Birch, Andrew Nicholas; Casacuberta, Josep; De Schrijver, Adinda; Gralak, Mikołaj Antoni; Guerche, Philippe; Jones, Huw; Manachini, Barbara; Messéan, Antoine; Nielsen, Elsa Ebbesen; Nogué, Fabien; Robaglia, Christophe; Rostoks, Nils; Sweet, Jeremy; Tebbe, Christoph; Visioli, Francesco; Ardizzone, Michele; Federici, Silvia; Fernandez Dumont, Antonio; Gennaro, Andrea; Gómez Ruiz, Jose Ángel; Lanzoni, Anna; Neri, Franco Maria; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos (2018). Assessment of genetically modified maize Bt11 x MIR162 x 1507 x GA21 and three subcombinations independently of their origin, for food and feed uses under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐DE‐2010‐86). EFSA Journal, 16(7):e05309.

Grujcic, Vesna; Nuy, Julia K; Salcher, Michaela M; Shabarova, Tanja; Kasalicky, Vojtech; Boenigk, Jens; Jensen, Manfred; Simek, Karel (2018). Cryptophyta as major bacterivores in freshwater summer plankton. The ISME journal, 12(7):1668-1681.

Nüesch-Inderbinen, Magdalena; Cernela, Nicole; Wüthrich, Daniel; Egli, Adrian; Stephan, R (2018). Genetic characterization of Shiga toxin producing Escherichia coli belonging to the emerging hybrid pathotype O80:H2 isolated from humans 2010–2017 in Switzerland. International Journal of Medical Microbiology : IJMM, 308(5):534-538.

Hardy, Anthony; Benford, Diane; Halldorsson, Thorhallur; Jeger, Michael John; Knutsen, Helle Katrine; More, Simon; Naegeli, Hanspeter; Noteborn, Hubert; Ockleford, Colin; Ricci, Antonia; Rychen, Guido; Schlatter, Josef R; Silano, Vittorio; Solecki, Roland; Turck, Dominique; Younes, Maged; Chaudhry, Qasim; Cubadda, Francesco; Gott, David; Oomen, Agnes; Weigel, Stefan; Karamitrou, Melpo; Schoonjans, Reinhilde; Mortensen, Alicja (2018). Guidance on risk assessment of the application of nanoscience and nanotechnologies in the food and feed chain: Part 1, human and animal health. EFSA Journal, 16(7):e05327.

Casacuberta, Josep; Nogué, Fabien; Naegeli, Hanspeter; Birch, Andrew Nicholas; De Schrijver, Adinda; Gralak, Mikołaj Antoni; Guerche, Philippe; Manachini, Barbara; Messéan, Antoine; Nielsen, Elsa Ebbesen; Robaglia, Christophe; Rostoks, Nils; Sweet, Jeremy; Tebbe, Christoph; Visioli, Francesco; Wal, Jean‐Michel; Moxon, Simon; Schneeberger, Korbinian; Federici, Silvia; Ramon, Matthew; Papadopoulou, Nikoletta; Jones, Huw (2018). Technical Note on the quality of DNA sequencing for the molecular characterisation of genetically modified plants. EFSA Journal, 16(7):e05345.

Bock, Christina; Salcher, Michaela M; Jensen, Manfred; Pandey, Ram Vinay; Boenigk, Jens (2018). Synchrony of Eukaryotic and Prokaryotic Planktonic Communities in Three Seasonally Sampled Austrian Lakes. Frontiers in Microbiology, 9:1290.

Naegeli, Hanspeter; Birch, Andrew Nicholas; Casacuberta, Josep; De Schrijver, Adinda; Gralak, Mikołaj Antoni; Guerche, Philippe; Jones, Huw; Manachini, Barbara; Messéan, Antoine; Nielsen, Elsa Ebbesen; Nogué, Fabien; Robaglia, Christophe; Rostoks, Nils; Sweet, Jeremy; Tebbe, Christoph; Visioli, Francesco; Wal, Jean‐Michel; Ardizzone, Michele; De Sanctis, Giacomo; Fernandez Dumont, Antonio; Gennaro, Andrea; Gómez Ruiz, José Angel; Lanzoni, Anna; Neri, Franco Maria; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos; Ramon, Matthew (2018). Assessment of genetically modified maize MON 87411 for food and feed uses, import and processing, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2015‐124). EFSA Journal, 16(6):e05310.

Nüesch-Inderbinen, Magdalena; Zurfluh, Katrin; Stevens, Marc J A; Stephan, R (2018). Complete and assembled genome sequence of an NDM-9- and CTX-M-15-producing Klebsiella pneumoniae ST147 wastewater isolate from Switzerland. Journal of Global Antimicrobial Resistance, 13:53-54.

Thurnheer, T; Belibasakis, G N (2018). Streptococcus oralis maintains homeostasis in oral biofilms by antagonizing the cariogenic pathogen Streptococcus mutans. Molecular Oral Microbiology, 33(3):234-239.

Naegeli, Hanspeter; Birch, Andrew Nicholas; Casacuberta, Josep; De Schrijver, Adinda; Gralak, Mikołaj Antoni; Guerche, Philippe; Jones, Huw; Manachini, Barbara; Messéan, Antoine; Nielsen, Elsa Ebbesen; Nogué, Fabien; Robaglia, Christophe; Rostoks, Nils; Sweet, Jeremy; Tebbe, Christoph; Visioli, Francesco; Wal, Jean‐Michel; Àlvarez, Fernando; Ardizzone, Michele; Paraskevopoulos, Konstantinos; Broll, Hermann; Devos, Yann; Fernandez Dumont, Antonio; Gómez Ruiz, Jose Ángel; Lanzoni, Anna; Neri, Franco Maria; Olaru, Irina; Papadopoulou, Nikoletta (2018). Assessment of genetically modified maize 4114 for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2014‐123). EFSA Journal, 16(5):e05280.

Silva, Marisa O D; Blom, Judith F; Yankova, Yana; Villiger, Jörg; Pernthaler, Jakob (2018). Priming of microbial microcystin degradation in biomass-fed gravity driven membrane filtration biofilms. Systematic and Applied Microbiology, 41(3):221-231.

Schuenemann, Verena J; Avanzi, Charlotte; Krause-Kyora, Ben; Seitz, Alexander; Herbig, Alexander; Inskip, Sarah; Bonazzi, Marion; Reiter, Ella; Urban, Christian; Dangvard Pedersen, Dorthe; Taylor, G Michael; Singh, Pushpendra; Stewart, Graham R; Velemínský, Petr; Likovsky, Jakub; Marcsik, Antónia; Molnár, Erika; Pálfi, György; Mariotti, Valentina; Riga, Alessandro; Belcastro, M Giovanna; Boldsen, Jesper L; Nebel, Almut; Mays, Simon; Donoghue, Helen D; Zakrzewski, Sonia; Benjak, Andrej; Nieselt, Kay; Cole, Stewart T; Krause, Johannes (2018). Ancient genomes reveal a high diversity of Mycobacterium leprae in medieval Europe. PLoS Pathogens, 14(5):e1006997.

Askari, Zeynab; Mas-Coma, Santiago; Bouwman, Abigail S; Boenke, Nicole; Stöllner, Thomas; Aali, Abolfazl; Rezaiian, Mostafa; Mowlavi, Gholamreza (2018). Fasciola hepatica eggs in paleofaeces of the Persian onager Equus hemionus onager, a donkey from Chehrabad archaeological site, dating back to the Sassanid Empire (224-651 AD), in ancient Iran. Infection, Genetics and Evolution, 62:233-243.

Naegeli, Hanspeter; Birch, Andrew Nicholas; Casacuberta, Josep; De Schrijver, Adinda; Gralak, Mikołaj Antoni; Guerche, Philippe; Jones, Huw; Manachini, Barbara; Messéan, Antoine; Nielsen, Elsa Ebbesen; Nogué, Fabien; Robaglia, Christophe; Rostoks, Nils; Sweet, Jeremy; Tebbe, Christoph; Visioli, Francesco; Wal, Jean‐Michel; Broll, Hermann; Gennaro, Andrea; Neri, Franco Maria; Paraskevopoulos, Konstantinos (2018). Assessment of genetically modified cotton GHB614 × LLCotton25 × MON 15985 for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2011‐94). EFSA Journal, 16(4):e05213.

Wambui, Joseph; Lamuka, Peter; Karuri, Edward; Matofari, Joseph; Njage, P M K (2018). Microbial contamination level profiles attributed to contamination of beef carcasses, personnel, and equipment: case of small and medium enterprise slaughterhouses. Journal of Food Protection, 81(4):684-691.

Naegeli, Hanspeter; Birch, Andrew Nicholas; Casacuberta, Josep; De Schrijver, Adinda; Gralak, Mikołaj Antoni; Guerche, Philippe; Jones, Huw; Manachini, Barbara; Messéan, Antoine; Nielsen, Elsa Ebbesen; Nogué, Fabien; Robaglia, Christophe; Rostoks, Nils; Sweet, Jeremy; Tebbe, Christoph; Visioli, Francesco; Wal, Jean‐Michel; Paraskevopoulos, Konstantinos; Lanzoni, Anna (2018). Statement complementing the EFSA Scientific Opinion on application (EFSA‐GMO‐DE‐2011‐95) for the placing on the market of genetically modified maize 5307 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Syngenta Crop Protection AG taking into consideration an additional toxicological study. EFSA Journal, 16(4):e05233.

Novacco, Marilisa; Sugiarto, Sarah; Willi, Barbara; Baumann, Julia; Spiri, Andrea M; Oestmann, Angelina; Riond-Schade, Barbara; Boretti, Felicitas S; Naegeli, Hanspeter; Hofmann-Lehmann, Regina (2018). Consecutive antibiotic treatment with doxycycline and marbofloxacin clears bacteremia in Mycoplasma haemofelis-infected cats. Veterinary Microbiology, 217:112-120.

Murer, Anita; McHugh, Donal; Caduff, Nicole; Kalchschmidt, Jens; Barros, Mario; Zbinden, Andrea; Capaul, Riccarda; Niedobitek, Gerald; Allday, Martin; Chijioke, Obinna; Münz, Christian (2018). EBV persistence without its EBNA3A and 3C oncogenes in vivo. PLoS Pathogens, 14(4):e1007039.

Stichling, Nicole; Suomalainen, Maarit; Flatt, Justin W; Schmid, Markus; Pacesa, Martin; Hemmi, Silvio; Jungraithmayr, Wolfgang; Maler, Mareike D; Freudenberg, Marina A; Plückthun, Andreas; May, Tobias; Köster, Mario; Fejer, György; Greber, Urs F (2018). Lung macrophage scavenger receptor SR-A6 (MARCO) is an adenovirus type-specific virus entry receptor. PLoS Pathogens, 14(3):e1006914.

Losasso, Carmen; Eckert, Ester M; Mastrorilli, Eleonora; Villiger, Jorg; Mancin, Marzia; Patuzzi, Ilaria; Di Cesare, Andrea; Cibin, Veronica; Barrucci, Federica; Pernthaler, Jakob; Corno, Gianluca; Ricci, Antonia (2018). Assessing the Influence of Vegan, Vegetarian and Omnivore Oriented Westernized Dietary Styles on Human Gut Microbiota: A Cross Sectional Study. Frontiers in Microbiology:9:317.

Naegeli, Hanspeter; Birch, Andrew Nicholas; Casacuberta, Josep; De Schrijver, Adinda; Gralak, Mikołaj Antoni; Guerche, Philippe; Jones, Huw; Manachini, Barbara; Messéan, Antoine; Nielsen, Elsa Ebbesen; Nogué, Fabien; Robaglia, Christophe; Rostoks, Nils; Sweet, Jeremy; Tebbe, Christoph; Visioli, Francesco; Wal, Jean‐Michel; Devos, Yann; Broll, Hermann; Ramon, Matthew (2018). Assessment of genetically modified maize MON 87403 for food and feed uses, import and processing, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐BE‐2015‐125). EFSA Journal, 16(3):e05225.

Bühl, H; Eibach, D; Nagel, M; Greub, G; Borel, Nicole; Sarpong, N; Rettig, T; Pesch, T; Aeby, S; Klöckner, A; Brunke, M; Krannich, S; Kreuels, B; Owusu-Dabo, E; Hogan, B; May, J; Henrichfreise, B (2018). Chlamydiae in febrile children with respiratory tract symptoms and age-matched controls, Ghana. New Microbes and New Infections, 22:44-48.

Knutsen, Helle Katrine; Alexander, Jan; Barregård, Lars; Bignami, Margherita; Brüschweiler, Beat; Ceccatelli, Sandra; Cottrill, Bruce; Dinovi, Michael; Grasl‐Kraupp, Bettina; Hogstrand, Christer; Hoogenboom, Laurentius (Ron); Nebbia, Carlo Stefano; Oswald, Isabelle P; Petersen, Annette; Rose, Martin; Roudot, Alain‐Claude; Schwerdtle, Tanja; Vleminckx, Christiane; Vollmer, Günter; Wallace, Heather; De Saeger, Sarah; Eriksen, Gunnar Sundstøl; Farmer, Peter; Fremy, Jean‐Marc; Gong, Yun Yun; Meyer, Karsten; Naegeli, Hanspeter; Parent‐Massin, Dominique; van Egmond, Hans; et al (2018). Risks to human and animal health related to the presence of moniliformin in food and feed. EFSA Journal, 16(3):e05082.

Morger, Damien; Zosel, Franziska; Bühlmann, Martin; Züger, Sara; Mittelviefhaus, Maximilian; Schuler, Benjamin; Luban, Jeremy; Grütter, Markus G (2018). The Three-Fold Axis of the HIV-1 Capsid Lattice Is the Species-Specific Binding Interface for TRIM5α. Journal of Virology, 92(5):e01541-17.

Zogg, Anna Lena; Zurfluh, Katrin; Schmitt, S; Nüesch-Inderbinen, Magdalena; Stephan, R (2018). Antimicrobial resistance, multilocus sequence types and virulence profiles of ESBL producing and non-ESBL producing uropathogenic Escherichia coli isolated from cats and dogs in Switzerland. Veterinary Microbiology, 216:79-84.

Naegeli, Hanspeter; Birch, Andrew Nicholas; Casacuberta, Josep; De Schrijver, Adinda; Gralak, Mikołaj Antoni; Guerche, Philippe; Jones, Huw; Manachini, Barbara; Messéan, Antoine; Nielsen, Elsa Ebbesen; Nogué, Fabien; Robaglia, Christophe; Rostoks, Nils; Sweet, Jeremy; Tebbe, Christoph; Visioli, Francesco; Wal, Jean‐Michel; Broll, Hermann; Fernandez Dumont, Antonio; Olaru, Irina (2018). Assessment of genetically modified maize NK603 x MON810 for renewal of authorisation under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐RX‐007). EFSA Journal, 16(2):e05163.

Ramirez, Kelly S; Knight, Christopher G; de Hollander, Mattias; Brearley, Francis Q; Constantinides, Bede; Cotton, Anne; et al; Crowther, Thomas W; Hartman, Kyle; van der Heijden, Marcel G A (2018). Detecting macroecological patterns in bacterial communities across independent studies of global soils. Nature Microbiology, 3(2):189-196.

Schwarz, Carsten; Hartl, Dominik; Eickmeier, Olaf; Hector, Andreas; Benden, Christian; Durieu, Isabelle; Sole, Amparo; Gartner, Silvia; Milla, Carlos E; Barry, Peter James (2018). Progress in Definition, Prevention and Treatment of Fungal Infections in Cystic Fibrosis. Mycopathologia, 183(1):21-32.

Kühnert, Denise; Kouyos, Roger; Shirreff, George; Pečerska, Jūlija; Scherrer, Alexandra U; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Günthard, Huldrych F; Stadler, Tanja; Bonhoeffer, Sebastian; Swiss HIV Cohort Study (2018). Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics. PLoS Pathogens, 14(2):e1006895.

Wagner, Karoline; Springer, Burkard; Imkamp, Frank; Opota, Onya; Greub, Gilbert; Keller, Peter M (2018). Detection of respiratory bacterial pathogens causing atypical pneumonia by multiplex Lightmix® RT-PCR. International Journal of Medical Microbiology : IJMM, 308(3):317-323.

Benford, Diane; Halldorsson, Thorhallur; Jeger, Michael John; Knutsen, Helle Katrine; More, Simon; Naegeli, Hanspeter; Noteborn, Hubert; Ockleford, Colin; Ricci, Antonia; Rychen, Guido; Schlatter, Josef R; Silano, Vittorio; Solecki, Roland; Turck, Dominique; Younes, Maged; Craig, Peter; Hart, Andrew; Von Goetz, Natalie; Koutsoumanis, Kostas; Mortensen, Alicja; Ossendorp, Bernadette; Martino, Laura; Merten, Caroline; Mosbach‐Schulz, Olaf; Hardy, Anthony (2018). Guidance on Uncertainty Analysis in Scientific Assessments. EFSA Journal, 16(1):e05123.

Benford, Diane; Halldorsson, Thorhallur; Jeger, Michael John; Knutsen, Helle Katrine; More, Simon; Naegeli, Hanspeter; Noteborn, Hubert; Ockleford, Colin; Ricci, Antonia; Rychen, Guido; Schlatter, Josef R; Silano, Vittorio; Solecki, Roland; Turck, Dominique; Younes, Maged; Craig, Peter; Hart, Andrew; Von Goetz, Natalie; Koutsoumanis, Kostas; Mortensen, Alicja; Ossendorp, Bernadette; Germini, Andrea; Martino, Laura; Merten, Caroline; Mosbach‐Schulz, Olaf; Smith, Anthony; Hardy, Anthony (2018). The principles and methods behind EFSA's Guidance on Uncertainty Analysis in Scientific Assessment. EFSA Journal, 16(1):e05122.

Reh, Lucia; Magnus, Carsten; Kadelka, Claus; Kühnert, Denise; Uhr, Therese; Weber, Jacqueline; Morris, Lynn; Moore, Penny L; Trkola, Alexandra (2018). Phenotypic deficits in the HIV-1 envelope are associated with the maturation of a V2-directed broadly neutralizing antibody lineage. PLoS Pathogens, 14:e1006825.

Sekaggya-Wiltshire, Christine; Lamorde, Mohammed; Kiragga, Agnes N; Dooley, Kelly E; Kamya, Moses R; Kambugu, Andrew; Fehr, Jan; Manabe, Yukari C; Castelnuovo, Barbara (2018). The utility of pharmacokinetic studies for the evaluation of exposure-response relationships for standard dose anti-tuberculosis drugs. Tuberculosis, 108:77-82.

Swart, A Leoni; Harrison, Christopher F; Eichinger, Ludwig; Steinert, Michael; Hilbi, Hubert (2018). Acanthamoeba and Dictyostelium as Cellular Models for Legionella Infection. Frontiers in Cellular and Infection Microbiology, 8:61.

Trejo-Cerro, Óscar; Eichwald, Catherine; Schraner, Elisabeth M; Silva-Ayala, Daniela; López, Susana; Arias, Carlos F (2018). Actin-dependent non-lytic rotavirus exit and infectious virus morphogenetic pathway in non-polarized cells. Journal of Virology, 92(6):e02076-17.

Bao, Kai; Bostanci, Nagihan; Thurnheer, Thomas; Grossmann, Jonas; Wolski, Witold E; Thay, Bernard; Belibasakis, Georgios N; Oscarsson, Jan (2018). Aggregatibacter actinomycetemcomitans H-NS promotes biofilm formation and alters protein dynamics of other species within a polymicrobial oral biofilm. npj Biofilms and Microbiomes, 4:12.

Brozy, Johannes; Schlaepfer, Erika; Mueller, Christina K S; Rochat, Mary-Aude; Rampini, Silvana K; Myburgh, Renier; Raum, Tobias; Kufer, Peter; Baeuerle, Patrick A; Muenz, Markus; Speck, Roberto F (2018). Antiviral Activity of HIV gp120-Targeting Bispecific T Cell Engager Antibody Constructs. Journal of Virology, 92(14):1-13.

Jans, C; Sarno, Eleonora; Collineau, L; Meile, L; Stärk, K D C; Stephan, R (2018). Consumer exposure to antimicrobial resistant bacteria from food at Swiss retail level. Frontiers in Microbiology, 9:362.

Asare, P T; Greppi, A; Stettler, M; Schwab, C; Stevens, Marc J A; Lacroix, C (2018). Decontamination of minimally-processed fresh lettuce using reuterin produced by cactobacillus reuteri. Frontiers in Microbiology, 9:1421.

Ramsauer, Anna Sophie; Kubacki, Jakub; Welle, Monika; Bachofen, Claudia; Fraefel, Cornel; Hoby, Stefan; Tobler, Kurt; Wenker, Christian (2018). Detection and Characterization of Okapi ( Okapia johnstoni )—specific Papillomavirus type 1 (OjPV1). Veterinary Microbiology, 223:113-118.

Giannini, P; Jermini, M; Leggeri, L; Nüesch-Inderbinen, Magdalena; Stephan, R (2018). Detection of Hepatitis E virus (HEV) RNA in raw cured sausages and raw cured sausages containing pig liver at retail stores in Switzerland. Journal of Food Protection, 81(1):43-45.

Seth-Smith, Helena M B; Imkamp, Frank; Tagini, Florian; Cuénod, Aline; Hömke, Rico; Jahn, Kathleen; Tschacher, Anne; Grendelmeier, Peter; Bättig, Veronika; Erb, Stefan; Reinhard, Miriam; Rütimann, Gottfried; Borrell, Sonia; Gagneux, Sebastien; Casanova, Carlo; Droz, Sara; Osthoff, Michael; Tamm, Michael; Nübel, Ulrich; Greub, Gilbert; Keller, Peter M; Egli, Adrian (2018). Discovery and Characterization of Mycobacterium basiliense sp. nov., a Nontuberculous Mycobacterium Isolated From Human Lungs. Frontiers in Microbiology, 9:3184.

Steiner, Bernhard; Weber, Stephen; Hilbi, Hubert (2018). Formation of the Legionella-containing vacuole: phosphoinositide conversion, GTPase modulation and ER dynamics. International Journal of Medical Microbiology : IJMM, 308(1):49-57.

Gopinath, G R; Chase, H R; Gangiredla, J; Eshwar, A; Jang, H; Patel, I; Negrete, F; Finkelstein, S; Park, E; Chung, T J; Yoo, Y J; Woo, J H; Lee, Y Y; Park, J; Choi, H; Jeong, S; Jun, S; Kim, M; Lee, C; Jeong, H; Fanning, S; Stephan, R; Iversen, C; Reich, F; Klein, G; Lehner, Angelika; Tall, B D (2018). Genomic characterization of malonate positive Cronobacter sakazakii serotype O:2, sequence type 64 strains, isolated from clinical, food, and environment samples. Gut Pathogens, 10:11.

Hornok, Sándor; Ágh, Nóra; Takács, Nóra; Kontschán, Jenő; Hofmann-Lehmann, Regina (2018). Haematospirillum and insect Wolbachia DNA in avian blood. Antonie van Leeuwenhoek, 111(3):479-483.

Tritten, Lucienne; Geary, Timothy G (2018). Helminth extracellular vesicles in host–parasite interactions. Current Opinion in Microbiology, 46:73-79.

Meir, Juliane; Hartmann, Elena; Eckstein, Marie-Therese; Guiducci, Eva; Kirchner, Florian; Rosenwald, Andreas; LeibundGut-Landmann, Salomé; Pérez, J. Christian (2018). Identification of Candida albicans regulatory genes governing mucosal infection. Cellular Microbiology, 20(8):e12841.

Eichwald, Catherine; De Lorenzo, Giuditta; Schraner, Elisabeth M; Papa, Guido; Bollati, Michela; Swuec, Paolo; de Rosa, Matteo; Milani, Mario; Mastrangelo, Eloise; Ackermann, Mathias; Burrone, Oscar R; Arnoldi, Francesca (2018). Identification of a small molecule that compromises the structural integrity of viroplasms and rotavirus double-layered particles. Journal of Virology, 92(3):e01943-17.

Seijsing, Johan; Sobieraj, Anna M; Keller, Nadia; Shen, Yang; Zinkernagel, Annelies S; Loessner, Martin J; Schmelcher, Mathias (2018). Improved Biodistribution and Extended Serum Half-Life of a Bacteriophage Endolysin by Albumin Binding Domain Fusion. Frontiers in Microbiology, 9:2927.

Richter, Anja M; Fazli, Mustafa; Schmid, Nadine; Shilling, Rebecca; Suppiger, Angela; Givskov, Michael; Eberl, Leo; Tolker-Nielsen, Tim (2018). Key Players and Individualists of Cyclic-di-GMP Signaling in Burkholderia cenocepacia. Frontiers in Microbiology, 9:3286.

Sparber, Florian; Dolowschiak, Tamas; Mertens, Sarah; Lauener, Laura; Clausen, Björn E; Joller, Nicole; Stoitzner, Patrizia; Tussiwand, Roxane; LeibundGut-Landmann, Salomé (2018). Langerin+ DCs regulate innate IL-17 production in the oral mucosa during Candida albicans-mediated infection. PLoS Pathogens, 14(5):e1007069.

Zuflauf, Marc; Zweifel, Claudio; Stephan, R (2018). Microbiological quality of raw milk sold directly from farms to consumers in Switzerland. Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 69:140-144.

Vogt, Cédric M; Armúa-Fernández, Maria Teresa; Tobler, Kurt; Hilbe, Monika; Aguilar, Claudio; Ackermann, Mathias; Deplazes, Peter; Eichwald, Catherine (2018). Oral application of recombinant Bacillus subtilis spores to dogs results in a humoral response against specific Echinococcus granulosus paramyosin and tropomyosin antigens. Infection and Immunity, 86(3):e00495-17.

Cieplik, Fabian; Steinwachs, Viktoria-Sophia; Muehler, Denise; Hiller, Karl-Anton; Thurnheer, Thomas; Belibasakis, Georgios N; Buchalla, Wolfgang; Maisch, Tim (2018). Phenalen-1-one-Mediated Antimicrobial Photodynamic Therapy: Antimicrobial Efficacy in a Periodontal Biofilm Model and Flow Cytometric Evaluation of Cytoplasmic Membrane Damage. Frontiers in Microbiology, 9:688.

Perraki, Artemis; Gronnier, Julien; Gouguet, Paul; Boudsocq, Marie; Deroubaix, Anne-Flore; Simon, Vincent; German-Retana, Sylvie; Legrand, Anthony; Habenstein, Birgit; Zipfel, Cyril; Bayer, Emmanuelle; Mongrand, Sébastien; Germain, Véronique (2018). REM1.3's phospho-status defines its plasma membrane nanodomain organization and activity in restricting PVX cell-to-cell movement. PLoS Pathogens, 14(11):e1007378.

Hicks Pries, Caitlin E; Sulman, Benjamin N; West, Corinna; O'Neill, Caitlin; Poppleton, Erik; Porras, Rachel C; Castanha, Cristina; Zhu, Biao; Wiedemeier, Daniel B; Torn, Margaret S (2018). Root litter decomposition slows with soil depth. Soil Biology and Biochemistry, 125:103-114.

Guariglia-Oropeza, Veronica; Hohl Orsi, R; Guldimann, Claudia; Wiedmann, M; Boor, K J (2018). The Listeria monocytogenes bile stimulon under acidic conditions is characterized by strain-specific patterns and the upregulation of motility, cell wall modification functions, and the PrfA regulon. Frontiers in Microbiology, 9:120.

Luthra, Sakshi; Rominski, Anna; Sander, Peter (2018). The Role of Antibiotic-Target-Modifying and Antibiotic-Modifying Enzymes in Drug Resistance. Frontiers in Microbiology, 9:2179.

Turkington, H L; Juozapaitis, M; Tsolakos, N; Corrales-Aguilar, E; Schwemmle, M; Hale, B G (2018). Unexpected Functional Divergence of Bat Influenza Virus NS1 Proteins. Journal of Virology, 92(5):e02097-17.

2017

Johler, Sophia (2017). A glimpse into the future - new therapeutic targets could transform the way we treat staphylococcal infections. Virulence, 8(8):1508-1510.

Maul, Julia-Tatjana; Maier, Philipp W; Anzengruber, Florian; Murer, Carla; Bosshard, Philipp P; Kerl, Katrin; French, Lars E; Navarini, Alexander A (2017). A case of tinea incognita and differential diagnosis of figurate erythema. Medical Mycology Case Reports, 18:8-11.

Seidl, Kati; Leemann, Michèle; Palheiros Marques, Miguel; Rachmühl, Carole; Leimer, Nadja; Andreoni, Federica; Achermann, Yvonne; Zinkernagel, Annelies S (2017). High level methicillin resistance correlates with reduced Staphylococcus aureus endothelial cell damage. International Journal of Medical Microbiology : IJMM, 307(1):11-20.

Goniotaki, Despoina; Lakkaraju, Asvin K K; Shrivastava, Amulya N; Bakirci, Pamela; Sorce, Silvia; Senatore, Assunta; Marpakwar, Rajlakshmi; Hornemann, Simone; Gasparini, Fabrizio; Triller, Antoine; Aguzzi, Adriano (2017). Inhibition of group-I metabotropic glutamate receptors protects against prion toxicity. PLoS Pathogens, 13(11):e1006733.

Higgins, Steven; Sanchez-Contreras, Maria; Gualdi, Stefano; Pinto-Carbó, Marta; Carlier, Aurélien; Eberl, Leo (2017). The Essential Genome of Burkholderia cenocepacia H111. Journal of Bacteriology, 199(22):e00260-17.

Lewandowska, Dagmara Wanda; Zagordi, Osvaldo; Geissberger, Fabienne-Desirée; Kufner, Verena; Schmutz, Stefan; Böni, Jürg; Metzner, Karin J; Trkola, Alexandra; Huber, Michael (2017). Correction to: Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples. Microbiome, 5(1):137.

Lopes, A M; Domingues, P; Zell, R; Hale, B G (2017). Structure-Guided Functional Annotation of the Influenza A Virus NS1 Protein Reveals Dynamic Evolution of the p85β-Binding Site during Circulation in Humans. Journal of Virology, 91(21):e01081-17.

Pitsch, Gianna; Adamec, Lubomír; Dirren, Sebastian; Nitsche, Frank; Šimek, Karel; Sirová, Dagmara; Posch, Thomas (2017). The green tetrahymena utriculariae n. sp. (ciliophora, oligohymenophorea) with its endosymbiotic algae (micractinium sp.), living in traps of a carnivorous aquatic plant. Journal of Eukaryotic Microbiology, 64(3):322-335.

Šimek, Karel; Pitsch, Gianna; Salcher, Michaela M; Sirová, Dagmara; Shabarova, Tanja; Adamec, Lubomír; Posch, Thomas (2017). Ecological Traits of the Algae-Bearing Tetrahymena utriculariae (Ciliophora) from Traps of the Aquatic Carnivorous Plant Utricularia reflexa. Journal of Eukaryotic Microbiology, 64(3):336-348.

Escoll, Pedro; Song, Ok-Ryul; Viana, Flávia; Steiner, Bernhard; Lagache, Thibault; Olivo-Marin, Jean-Christophe; Impens, Francis; Brodin, Priscille; Hilbi, Hubert; Buchrieser, Carmen (2017). Legionella pneumophila Modulates Mitochondrial Dynamics to Trigger Metabolic Repurposing of Infected Macrophages. Cell Host & Microbe, 22(3):302-316.e7.

Niewoehner, Ole; Jinek, Martin (2017). Specialized weaponry: how a type III-A CRISPR-cas system excels at combating phages. Cell Host & Microbe, 22(3):258-259.

Rissanen, Ilona; Stass, Robert; Zeltina, Antra; Li, Sai; Hepojoki, Jussi; Harlos, Karl; Gilbert, Robert J. C; Huiskonen, Juha T; Bowden, Thomas A (2017). Structural transitions of the conserved and metastable hantaviral glycoprotein envelope. Journal of Virology, 91(21):e00378-17.

Basso, Virginia; Znaidi, Sadri; Lagage, Valentine; Cabral, Vitor; Schönherr, Franziska Annett; LeibundGut-Landmann, Salomé; d'Enfert, Christophe; Bachellier-Bassi, Sophie (2017). The two-component response regulator Skn7 belongs to a network of transcription factors regulating morphogenesis in Candida albicans and independently limits morphogenesis-induced ROS accumulation. Molecular Microbiology, 106(1):157-182.

Lewandowska, Dagmara W; Zagordi, Osvaldo; Geissberger, Fabienne-Desirée; Kufner, Verena; Schmutz, Stefan; Böni, Jürg; Metzner, Karin J; Trkola, Alexandra; Huber, Michael (2017). Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples. Microbiome, 5(1):94.

Sabaté Brescó, Marina; Harris, Llinos G; Thompson, Keith; Stanic, Barbara; Morgenstern, Mario; O'Mahony, Liam; Richards, R Geoff; Moriarty, T Fintan (2017). Pathogenic Mechanisms and Host Interactions in Staphylococcus epidermidis Device-Related Infection. Frontiers in Microbiology:8:1401.

Dirren, Sebastian; Pitsch, Gianna; Silva, Marisa O D; Posch, Thomas (2017). Grazing of Nuclearia thermophila and Nuclearia delicatula (Nucleariidae, Opisthokonta) on the toxic cyanobacterium Planktothrix rubescens. European Journal of Protistology, 60:87-101.

Maler, Mareike D; Nielsen, Peter J; Stichling, Nicole; Cohen, Idan; Ruzsics, Zsolt; Wood, Connor; Engelhard, Peggy; Suomalainen, Maarit; Gyory, Ildiko; Huber, Michael; Müller-Quernheim, Joachim; Schamel, Wolfgang W A; Gordon, Siamon; Jakob, Thilo; Martin, Stefan F; Jahnen-Dechent, Willi; Greber, Urs F; Freudenberg, Marina A; Fejer, György (2017). Key role of the scavenger receptor MARCO in mediating adenovirus infection and subsequent innate responses of macrophages. mBio, 8(4):e00670-17.

Fazli, Mustafa; Rybtke, Morten; Steiner, Elisabeth; Weidel, Elisabeth; Berthelsen, Jens; Groizeleau, Julie; Bin, Wu; Zhi, Boo Zhao; Yaming, Zhang; Kaever, Volkhard; Givskov, Michael; Hartmann, Rolf W; Eberl, Leo; Tolker-Nielsen, Tim (2017). Regulation of Burkholderia cenocepacia biofilm formation by RpoN and the c-di-GMP effector BerB. MicrobiologyOpen, 6(4):e00480.

Mika, Moana; Maurer, Josua; Korten, Insa; Allemann, Aurélie; Aebi, Suzanne; Brugger, Silvio D; Qi, Weihong; Frey, Urs; Latzin, Philipp; Hilty, Markus (2017). Influence of the pneumococcal conjugate vaccines on the temporal variation of pneumococcal carriage and the nasal microbiota in healthy infants: a longitudinal analysis of a case-control study. Microbiome:5:85.

McHugh, Donal; Caduff, Nicole; Barros, Mario Henrique M; Rämer, Patrick C; Raykova, Ana; Murer, Anita; Landtwing, Vanessa; Quast, Isaak; Styles, Christine T; Spohn, Michael; Fowotade, Adeola; Delecluse, Henri-Jacques; Papoudou-Bai, Alexandra; Lee, Yong-Moon; Kim, Jin-Man; Middeldorp, Jaap; Schulz, Thomas F; Cesarman, Ethel; Zbinden, Andrea; Capaul, Riccarda; White, Robert E; Allday, Martin J; Niedobitek, Gerald; Blackbourn, David J; Grundhoff, A; Münz, Christian (2017). Persistent KSHV Infection Increases EBV-Associated Tumor Formation In Vivo via Enhanced EBV Lytic Gene Expression. Cell Host & Microbe, 22(1):61-73.

Yakimovich, Artur; Huttunen, Moona; Zehnder, Benno; Coulter, Lesley J; Gould, Victoria; Schneider, Christoph; Kopf, Manfred; McInnes, Colin J; Greber, Urs F; Mercer, Jason (2017). Inhibition of Poxvirus Gene Expression and Genome Replication by Bisbenzimide Derivatives. Journal of Virology:00838-17.

Kok, Yik Lim; Ciuffi, Angela; Metzner, Karin J (2017). Unravelling HIV-1 latency, one cell at a time. Trends in Microbiology, 25(11):932-941.

Shaw, Megan L; Stertz, S (2017). Role of Host Genes in Influenza Virus Replication. In: Shaw, Megan L; Stertz, S. Current Topics in Microbiology and Immunology. Berlin, Heidelberg: Springer, 1-39.

Ostapchuk, Philomena; Suomalainen, Maarit; Zheng, Yueting; Boucke, Karin; Greber, Urs F; Hearing, Patrick (2017). The adenovirus major core protein VII is dispensable for virion assembly but is essential for lytic infection. PLoS Pathogens, 13(6):e1006455.

Baumgartner, Michael; Roffler, Stefan; Wicker, Thomas; Pernthaler, Jakob (2017). Letting go: bacterial genome reduction solves the dilemma of adapting to predation mortality in a substrate-restricted environment. The ISME journal, 11(10):2258-2266.

Toyofuku, Masanori; Morinaga, Kana; Hashimoto, Yohei; Uhl, Jenny; Shimamura, Hiroko; Inaba, Hideki; Schmitt-Kopplin, Philippe; Eberl, Leo; Nomura, Nobuhiko (2017). Membrane vesicle-mediated bacterial communication. The ISME journal, 11(6):1504-1509.

Pernthaler, Jakob (2017). Competition and niche separation of pelagic bacteria in freshwater habitats. Environmental Microbiology, 19(6):2133-2150.

Leonard, Cory Ann; Schoborg, Robert V; Borel, Nicole (2017). Productive and penicillin-stressed chlamydia pecorum infection induces nuclear factor kappa b activation and interleukin-6 secretion in vitro. Frontiers in Cellular and Infection Microbiology, 7:180.

Brandenberg, Oliver F; Magnus, Carsten; Rusert, Peter; Günthard, Huldrych F; Regoes, Roland Robert; Trkola, Alexandra (2017). Predicting HIV-1 transmission and antibody neutralization efficacy in vivo from stoichiometric parameters. PLoS Pathogens, 13(5):e1006313.

Schmid, Nadine; Suppiger, Angela; Steiner, Elisabeth; Pessi, Gabriella; Kaever, Volkhard; Fazli, Mustafa; Tolker-Nielsen, Tim; Jenal, Urs; Eberl, Leo (2017). High intracellular c-di-GMP levels antagonize quorum sensing and virulence gene expression in Burkholderia cenocepacia H111. Microbiology, 163(5):754-764.

Althaus, Denise; Jermini, Marco; Giannini, Petra; Martinetti, Gladys; Reinholz, Danuta; Nüesch-Inderbinen, Magdalena; Lehner, Angelika; Stephan, Roger (2017). Local outbreak of Listeria monocytogenes serotype 4b sequence type 6 due to contaminated meat pâté. Foodborne Pathogens and Disease, 14(4):219-222.

Buess, Simone; Nüesch-Inderbinen, Magdalena; Stephan, Roger; Zurfluh, Katrin (2017). Assessment of animals as a reservoir for colistin resistance: no MCR-1/MCR-2 producing Enterobacteriaceae detected in Swiss livestock. Journal of global antimicrobial resistance, 8:33-34.

Seth-Smith, Helena M B; Katharios, Pantelis; Dourala, Nancy; Mateos, José M; Fehr, Alexander G J; Nufer, Lisbeth; Ruetten, Maja; Guevara Soto, Maricruz; Vaughan, Lloyd (2017). Ca. Similichlamydia in epitheliocystis co-infection of gilthead seabream gills: unique morphological features of a deep branching chlamydial family. Frontiers in Microbiology, 8:508.

Sihto, Henna-Maria; Stephan, Roger; Engl, Christoph; Chen, J; Johler, Sophia (2017). Effect of food-related stress conditions and loss of agr and sigB on seb promoter activity in S. aureus. Food Microbiology, 65:205-212.

Arand, Michael; Marowsky, Anne (2017). Misclassification of PfEH1 and PfEH2 as epoxide hydrolases. mBio, 8(2):04-17.

Bloch, Susanne; Thurnheer, Thomas; Murakami, Yukitaka; Belibasakis, Georgios N; Schäffer, Christina (2017). Behavior of two Tannerella forsythia strains and cell surface mutants in multispecies oral biofilms. Molecular Oral Microbiology, 32(5):404-418.

Beauparlant, David; Rusert, Peter; Magnus, Carsten; Kadelka, Claus; Weber, Jacqueline; Uhr, Therese; Zagordi, Osvaldo; Oberle, Corinna; Duenas-Decamp, Maria J; Clapham, Paul R; Metzner, Karin J; Günthard, Huldrych F; Trkola, Alexandra (2017). Delineating CD4 dependency of HIV-1: Adaptation to infect low level CD4 expressing target cells widens cellular tropism but severely impacts on envelope functionality. PLoS Pathogens, 13(3):e1006255.

Shabarova, Tanja; Kasalický, Vojtěch; Šimek, Karel; Nedoma, Jiří; Znachor, Petr; Posch, Thomas; Pernthaler, Jakob; Salcher, Michaela M (2017). Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach. Environmental Microbiology, 19(3):1296-1309.

Feigelman, Rounak; Kahlert, Christian R; Baty, Florent; Rassouli, Frank; Kleiner, Rebekka L; Kohler, Philipp; Brutsche, Martin H; von Mering, Christian (2017). Sputum DNA sequencing in cystic fibrosis: non-invasive access to the lung microbiome and to pathogen details. Microbiome, 5(1):20.

Müller, A; Collineau, Lucy; Stephan, Roger; Müller, Andrea; Stärk, K D C (2017). Assessment of the risk of foodborne transmission and burden of hepatitis E in Switzerland. International Journal of Food Microbiology, 242:107-115.

Keller, Saskia; Hetzel, Udo; Sironen, T; Korzyukov, Y; Vapalahti, O; Kipar, Anja; Hepojoki, Jussi (2017). Co-Infecting reptarenaviruses can be vertically transmitted in Boa Constrictor. PLoS Pathogens, 13(1):e1006179.

Greber, Urs F; Bartenschlager, Ralf (2017). An expanded view of viruses. FEMS Microbiology Reviews, 41(1):1-4.

Carlier, Aurelien; Cnockaert, Margo; Fehr, Linda; Vandamme, Peter; Eberl, Leo (2017). Draft genome and description of Orrella dioscoreae gen. nov. sp. nov., a new species of Alcaligenaceae isolated from leaf acumens of Dioscorea sansibarensis. Systematic and Applied Microbiology, 40(1):11-21.

Rime, Thomas; Niklaus, Pascal A (2017). Spatio-temporal dynamics of soil CH4 uptake after application of N fertilizer with and without the nitrification inhibitor 3,4- dimethylpyrazole phosphate (DMPP). Soil Biology and Biochemistry, 104:218-225.

Emond Rheault, J G; Jeukens, J; Freschi, L; Kukavica-Ibrulj, I; Boyle, B; Dupont, M J; Stephan, Roger; Goodridge, Lawrence; Levesque, Roger (2017). A Syst-OMICS approach to ensuring food safety and reducing the economic burden of Salmonellosis. Frontiers in Microbiology, 8:996.

Schmidt, Thomas Sebastian Benedikt; Matias Rodrigues, João Frederico; von Mering, Christian (2017). A family of interaction-adjusted indices of community similarity. The ISME journal, 11(3):791-807.

Mossoun, A; Calvignac-Spencer, S; Anoh, A E; Pauly, M S; Driscoll, D A; Michel, A O; Grah Nazaire, L; Pfister, S; Sabwe, P; Thiesen, U; Vogler, Barbara; Wiersma, L; Muyembe-Tamfum, J J; Karhemere, S; Akoua-Koffi, C; Couacy-Hymann, E; Fruth, B; Wittig, R; Leendertz, F; Schubert, G (2017). Bushmeat hunting and zoonotic transmission of Simian T-lymphotropic virus 1 in tropical West and Central Africa. Journal of Virology, 91(10):e02479-16.

Alfreider, Albin; Baumer, Andreas; Bogensperger, Teresa; Posch, Thomas; Salcher, Michaela M; Summerer, Monika (2017). CO2 assimilation strategies in stratified lakes: Diversity and distribution patterns of chemolithoautotrophs. Environmental Microbiology, 19(7):2754-2768.

Franzoso, Francesca D; Seyffert, Michael; Vogel, Rebecca; Yakimovich, Artur; de Andrade Pereira, Bruna; Meier, Anita F; Sutter, Sereina O; Tobler, Kurt; Vogt, Bernd; Greber, Urs F; Büning, Hildegard; Ackermann, Mathias; Fraefel, Cornel (2017). Cell cycle-dependent expression of AAV2 Rep in HSV-1 co-infections gives rise to a mosaic of cells replicating either AAV2 or HSV-1. Journal of Virology:JVI.00357-17.

Zweifel, Claudio; Fierz, L; Cernela, Nicole; Laaksonen, S; Fredriksson-Ahomaa, Maria; Stephan, Roger (2017). Characteristics of Shiga toxin-producing E. coli O157 in slaughtered reindeer from northern Finland. Journal of Food Protection, 80(3):454-458.

Leinweber, Anne; Fredrik Inglis, R; Kümmerli, Rolf (2017). Cheating fosters species co-existence in well-mixed bacterial communities. The ISME journal, 11(5):1179-1188.

Nüesch-Inderbinen, Magdalena; Baschera, Marco; Zurfluh, Katrin; Hächler, Herbert; Nüesch, H R; Stephan, Roger (2017). Clonal diversity, virulence potential and antimicrobial resistance of Escherichia coli causing community acquired urinary tract infection in Switzerland. Frontiers in Microbiology, 8:2334.

Eshwar, A K; Guldimann, Claudia; Oevermann, Anna; Tasara, Taurai (2017). Cold-shock domain family proteins (Csps) are involved in regulation of virulence, cellular aggregation and flagella-based motility in Listeria monocytogenes. Frontiers in Cellular and Infection Microbiology, 7:453.

Chase, H R; Gopinath, G R; Eshwar, A K; Stoller, A; Fricker-Feer, C; Gangiredla, J; Patel, I R; Cinar, H N; Jeong, H; Lee, C; Negrete, F; Finkelstein, S; Stephan, Roger; Tall, B D; Lehner, Angelika (2017). Comparative genomic characterization of the highly persistent and potentially virulent Cronobacter sakazakii ST83, CC65 strain H322 and other ST83 strains. Frontiers in Microbiology, 8:1136.

Meier, A B; Guldimann, Claudia; Markkula, A; Pöntinen, A; Korkeala, H; Tasara, Taurai (2017). Comparative phenotypic and genotypic analysis of Swiss and Finnish Listeria monocytogenes isolates with respect to benzalkonium chloride resistance. Frontiers in Microbiology, 8:397.

Lardi, Martina; de Campos, Samanta Bolzan; Purtschert, Gabriela; Eberl, Leo; Pessi, Gabriella (2017). Competition Experiments for Legume Infection Identify Burkholderia phymatum as a Highly Competitive β-Rhizobium. Frontiers in Microbiology, 8:1527.

Wang, Shaopu; Giller, Katrin; Kreuzer, Michael; Ulbrich, Susanne E; Braun, Ueli; Schwarm, Angela (2017). Contribution of ruminal fungi, archaea, protozoa, and bacteria to the methane suppression caused by oilseed supplemented diets. Frontiers in Microbiology, 8:1864.

Taylor-Brown, Alyce; Pillonel, Trestan; Bridle, Andrew; Qi, Weihong; Bachmann, Nathan L; Miller, Terrence L; Greub, Gilbert; Nowak, Barbara; Seth-Smith, Helena M B; Vaughan, Lloyd; Polkinghorne, Adam (2017). Culture-independent genomics of a novel chlamydial pathogen of fish provides new insight into host-specific adaptations utilized by these intracellular bacteria. Environmental Microbiology, 19(5):1899-1913.

Davis, Leyla R; Bigler, Laurent; Woodhams, Douglas C (2017). Developmental trajectories of amphibian microbiota: response to bacterial therapy depends on initial community structure. Environmental Microbiology, 19(4):1502-1517.

Leppert, Katrin N; Niklaus, Pascal A; Scherer-Lorenzen, Michael (2017). Does species richness of subtropical tree leaf litter affect decomposition, nutrient release, transfer and subsequent uptake by plants? Soil Biology and Biochemistry, 115:44-53.

Jans, C; Merz, Axel; Johler, Sophia; Younan, M; Tanner, S A; Wambua Mulwa Kaindi, D; Wangoh, J; Bonfoh, B; Meile, Leo; Tasara, Taurai (2017). East and West African milk products are reservoirs for human and livestock-associated Staphylococcus aureus. Food Microbiology, 65:64-73.

Blodkamp, Stefanie; Kadlec, Kristina; Gutsmann, Thomas; Quiblier, Chantal; Naim, Hassan Y; Schwarz, Stefan; von Köckritz-Blickwede, Maren (2017). Effects of SecDF on the antimicrobial functions of cathelicidins against Staphylococcus aureus. Veterinary Microbiology, 200:52-58.

Zehnder, Matthias; Rechenberg, D-K; Thurnheer, T; Lüthi-Schaller, H; Belibasakis, G N (2017). FISHing for gutta-percha-adhered biofilms in purulent post-treatment apical periodontitis. Molecular Oral Microbiology, 32(3):226-235.

Bärlocher, Kevin; Welin, Amanda; Hilbi, Hubert (2017). Formation of the legionella replicative compartment at the crossroads of retrograde trafficking. Frontiers in Cellular and Infection Microbiology, 7:482.

Hingston, P; Chen, J; Dhillon, B; Brinkman, F; Laing, C; Gannon, V; Truelstrup Hansen, L; Tasara, Taurai; Allen, Kevin; Wang, S (2017). Genotypes associated with Listeria monocytogenes isolates displaying impaired or enhanced tolerances to cold, salt, acid, or desiccation stress. Frontiers in Microbiology, 8:369.

Lempereur, Laetitia; Beck, Relja; Fonseca, Isabel; Marques, Cátia; Duarte, Ana; Santos, Marcos; Zúquete, Sara; Gomes, Jacinto; Walder, Gernot; Domingos, Ana; Antunes, Sandra; Baneth, Gad; Silaghi, Cornelia; Holman, Patricia; Zintl, Annetta (2017). Guidelines for the detection of babesia and theileria parasites. Vector Borne and Zoonotic Diseases, 17(1):51-65.

Portillo, Aránzazu; de Sousa, Rita; Santibáñez, Sonia; Duarte, Ana; Edouard, Sophie; Fonseca, Isabel P; Marques, Cátia; Novakova, Marketa; Palomar, Ana M; Santos, Marcos; Silaghi, Cornelia; Tomassone, Laura; Zúquete, Sara; Oteo, José A (2017). Guidelines for the detection of rickettsia spp. Vector Borne and Zoonotic Diseases, 17(1):23-32.

Silaghi, Cornelia; Santos, Ana Sofia; Gomes, Jacinto; Christova, Iva; Matei, Ioana Adriana; Walder, Gernot; Domingos, Ana; Bell-Sakyi, Lesley; Sprong, Hein; von Loewenich, Friederike D; Oteo, José A; de la Fuente, José; Dumler, J Stephen (2017). Guidelines for the direct detection of anaplasma spp. in diagnosis and epidemiological studies. Vector Borne and Zoonotic Diseases, 17(1):12-22.

Kyburz, Andreas; Müller, Anne (2017). Helicobacter pylori and Extragastric Diseases. In: Tegtmeyer, Nicole; Backert, Steffen. Molecular Pathogenesis and Signal Transduction by Helicobacter pylori. Springer International Publishing: Springer, 325-347.

Fierz, Lisa; Cernela, Nicole; Hauser, E; Nüesch-Inderbinen, Magdalena; Stephan, Roger (2017). Human infections with Shiga toxin-producing Escherichia coli, Switzerland, 2010-2014. Frontiers in Microbiology, 8:1471.

Erktan, Amandine; Balmot, Joan; Merino-Martín, Luis; Monnier, Yogan; Pailler, François; Coq, Sylvain; Abiven, Samuel; Stokes, Alexia; Le Bissonnais, Yves (2017). Immediate and long-term effect of tannins on the stabilization of soil aggregates. Soil Biology and Biochemistry, 105:197-205.

Work, Thierry M; Dagenais, Julie; Weatherby, Tina M; Balazs, George H; Ackermann, Mathias (2017). In-vitro replication of Chelonid herpesvirus 5 in organotypic skin cultures from Hawaiian green turtles (Chelonia mydas). Journal of Virology, 91(17):e00404-17.

Hochstrasser, Ramon; Hilbi, Hubert (2017). Intra-species and inter-kingdom signaling of Legionella pneumophila. Frontiers in Microbiology, 8:79.

Becker, Katja; Haldimann, Klara; Selchow, Petra; Reinau, Lukas M; Dal Molin, Michael; Sander, Peter (2017). Lipoprotein Glycosylation by Protein-O-Mannosyltransferase (MAB_1122c) Contributes to Low Cell Envelope Permeability and Antibiotic Resistance of Mycobacterium abscessus. Frontiers in Microbiology, 8:2123.

Bailly, Aurélien; Weisskopf, Laure (2017). Mining the Volatilomes of Plant-Associated Microbiota for New Biocontrol Solutions. Frontiers in Microbiology:8:1638.

Morganti, Giulia; Gavaudan, Stefano; Canonico, Cristina; Ravagnan, Silvia; Olivieri, Emanuela; Diaferia, Manuela; Marenzoni, Maria Luisa; Antognoni, Maria Teresa; Capelli, Gioia; Silaghi, Cornelia; Veronesi, Fabrizia (2017). Molecular survey on Rickettsia spp., Anaplasma phagocytophilum, Borrelia burgdorferi sensu lato, and Babesia spp. in Ixodes ricinus Ttcks infesting dogs in central Italy. Vector Borne and Zoonotic Diseases, 17(11):743-748.

de Campos, Samanta Bolzan; Lardi, Martina; Gandolfi, Alessia; Eberl, Leo; Pessi, Gabriella (2017). Mutations in Two Paraburkholderia phymatum Type VI Secretion Systems Cause Reduced Fitness in Interbacterial Competition. Frontiers in Microbiology:8:2473.

Dervas, Eva; Hepojoki, Jussi; Laimbacher, Andrea; Romero-Palomo, Fernando; Jelinek, Christine; Keller, Saskia; Smura, Teemu; Hepojoki, Satu; Kipar, Anja; Hetzel, Udo (2017). Nidovirus-Associated proliferative pneumonia in the green tree python (Morelia viridis). Journal of Virology, 91(21):e00718-17.

Rochat, M A; Schlaepfer, E; Speck, R F (2017). Promising role of toll-like receptor 8 agonist in concert with prostratin for activation of silent HIV. Journal of Virology, 91(4):e02084-16.

Schweneker, Marc; Laimbacher, Andrea S; Zimmer, Gert; Wagner, Susanne; Schraner, Elisabeth M; Wolferstätter, Michael; Klingenberg, Marieken; Dirmeier, Ulrike; Steigerwald, Robin; Lauterbach, Henning; Hochrein, Hubertus; Chaplin, Paul; Suter, Mark; Hausmann, Jürgen (2017). Recombinant modified vaccinia virus Ankara generating Ebola virus-like particles. Journal of Virology, 91(11):e00343-17.

Kane, Sarah J; Swanson, Eric; Gordon, Elizabeth O; Rocha, Savannah; Bender, Heather R; Donius, Luke R; Aguzzi, Adriano; Hannan, Jonathan P; Zabel, Mark D; Imperiale, Michael J; Mabbott, Neil; Horiuchi, Motohiro (2017). Relative Impact of Complement Receptors CD21/35 (Cr2/1) on Scrapie Pathogenesis in Mice. mSphere, 2(6):e00493-17.

Hindermann, Denise; Gopinath, G; Chase, H; Negrete, F; Althaus, Denise; Zurfluh, Katrin; Tall, B D; Stephan, Roger; Nüesch-Inderbinen, Magdalena (2017). Salmonella enterica serovar Infantis from food and human infections, Switzerland, 2010-2015: poultry-related multidrug resistant clones and an emerging ESBL producing clonal lineage. Frontiers in Microbiology, 8:1322.

Broecker, Felix; Russo, Giancarlo; Klumpp, Jochen; Moelling, Karin (2017). Stable core virome despite variable microbiome after fecal transfer. Gut Microbes, 8(3):214-220.

Guldimann, Claudia; Guariglia-Oropeza, V; Harrand, S; Kentner, David; Boor, K J; Wiedmann, Martin (2017). Stochastic and differential activation of σB and PrfA in Listeria monocytogenes at the single cell level under different environmental stress conditions. Frontiers in Microbiology, 8:348.

Münz, Christian (2017). The Autophagic Machinery in Viral Exocytosis. Frontiers in Microbiology, 8:269.

Joller, Nicole; Kuchroo, Vijay K (2017). Tim-3, Lag-3, and TIGIT. In: Yoshimura, Akihiko. Emerging Concepts Targeting Immune Checkpoints in Cancer and Autoimmunity. Cham: Springer, 127-156.

Bünter, Julia P; Seth-Smith, Helena M B; Rüegg, Simon; Heikinheimo, Annamari; Borel, Nicole; Johler, Sophia (2017). Wild type agr-negative livestock-associated MRSA exhibits high adhesive capacity to human and porcine cells. Research in Microbiology, 168(2):130-138.

2016

Granato, Elisa; Harrison, Freya; Kümmerli, Rolf (2016). Do bacterial “virulence factors” always increase virulence? A meta-analysis of pyoverdine production in Pseudomonas aeruginosa as a test case. Frontiers in Microbiology, 7:1952.

Joutsen, S; Eklund, K M; Laukkanen-Ninios, R; Stephan, Roger; Fredriksson-Ahomaa, Maria (2016). Sheep carrying pathogenic Yersinia enterocolitica bioserotypes 2/O:9 and 5/O:3 in the feces at slaughter. Veterinary Microbiology, 179:78-82.

Margot, Heike; Zwietering, M H; Joosten, Han; Stephan, Roger (2016). Determination of single cell lag times of Cronobacter spp. strains exposed to different stress conditions: impact on detection. International Journal of Food Microbiology, 236:161-166.

Walker, Andreas; Skibbe, Kathrin; Steinmann, Eike; Pfaender, Stephanie; Kuntzen, Thomas; Megger, Dominik A; Groten, Svenja; Sitek, Barbara; Lauer, Georg M; Kim, Arthur Y; Pietschmann, Thomas; Allen, Todd M; Timm, Joerg (2016). Distinct escape pathway by hepatitis C virus genotype 1a from a dominant CD8+T cell response by selection of altered epitope processing. Journal of Virology, 90(1):33-42.

Altmeier, Simon; Toska, Albulena; Sparber, Florian; Teijeira, Alvaro; Halin, Cornelia; LeibundGut-Landmann, Salomé (2016). IL-1 Coordinates the neutrophil response to C.Albicans in the oral mucosa. PLoS Pathogens, 12:9.

Dolowschiak, Tamas; Mueller, Anna Angelika; Pisan, Lynn Joanna; Feigelman, Rounak; Felmy, Boas; Sellin, Mikael Erik; Namineni, Sukumar; Nguyen, Bidong Dinh; Wotzka, Sandra Yvonne; Heikenwalder, Mathias; von Mering, Christian; Mueller, Christoph; Hardt, Wolf-Dietrich (2016). IFN-γ Hinders Recovery from Mucosal Inflammation during Antibiotic Therapy for Salmonella Gut Infection. Cell Host & Microbe, 20(2):238-249.

Krtková, Jana; Thomas, Elizabeth B; Alas, Germain C M; Schraner, Elisabeth M; Behjatnia, Habib R; Hehl, Adrian B; Paredez, Alexander R (2016). Rac regulates giardia lamblia encystation by coordinating cyst wall protein trafficking and secretion. mBio, 7(4):e01003-e01016.

Scherrer, Simone; Borgström, Anna; Frei, Daniel; Wittenbrink, Max (2016). First screening for Brachyspira hampsonii in Swiss pigs applying a new high resolution melting assay. Veterinary Microbiology, 193:17-21.

Birch, Andrew N E; Casacuberta, Josep; De Schrijver, Adinda; Gralak, Mikolaj Antoni; Guerche, Philippe; Jones, Huw; Manachini, Barbara; Messéan, Antoine; Naegeli, Hanspeter; Ebbesen Nielsen, Elsa; Nogué, Fabien; Robaglia, Christophe; Rostoks, Nils; Sweet, Jeremy; Tebbe, Christoph; Visioli, Francesco; Wal, Jean-Michel (2016). Scientific Opinion on an application by Syngenta (EFSA-GMO-DE-2011-99) for the placing on the market of maize Bt11 × 59122 × MIR604 × 1507 × GA21 and twenty subcombinations, which have not been authorised previously independently of their origin, for food and feed uses, import and processing under Regulation (EC) No 1829/2003. EFSA Journal, 14(8):e04567.

Green, Victoria A; Pelkmans, Lucas (2016). A Systems Survey of Progressive Host-Cell Reorganization during Rotavirus Infection. Cell Host & Microbe, 20(1):107-120.

Pires, João; Kuenzli, Esther; Kasraian, Sara; Tinguely, Regula; Furrer, Hansjakob; Hilty, Markus; Hatz, Christoph; Endimiani, Andrea (2016). Polyclonal Intestinal Colonization with Extended-Spectrum Cephalosporin-Resistant Enterobacteriaceae upon Traveling to India. Frontiers in Microbiology, 7:1069.

Pham, Van T; Lacroix, Christophe; Braegger, Christian P; Chassard, Christophe (2016). Early colonization of functional groups of microbes in the infant gut. Environmental Microbiology, 18(7):2246-2258.

Seth-Smith, Helena M B; Dourala, Nancy; Fehr, Alexander; Qi, Weihong; Katharios, Pantelis; Ruetten, Maja; Mateos, José M; Nufer, Lisbeth; Weilenmann, Roseline; Ziegler, Urs; Thomson, Nicholas R; Schlapbach, Ralph; Vaughan, Lloyd (2016). Emerging pathogens of gilthead seabream: characterisation and genomic analysis of novel intracellular β-proteobacteria. The ISME journal, 10(7):1791-1803.

Zumthor, Jon Paulin; Cernikova, Lenka; Rout, Samuel; Kaech, Andres; Faso, Carmen; Hehl, Adrian B (2016). Static clathrin assemblies at the peripheral vacuole-plasma membrane interface of the parasitic protozoan giardia lamblia. PLoS Pathogens, 12(7):e1005756.

Jost, Geraldine; Bloemberg, Guido V; Hombach, Michael (2016). Improved sensitivity for meticillin resistance detection in coagulase-negative staphylococci by moxalactam antibiotic discs or a cefoxitin investigation zone. Journal of Medical Microbiology, 65(6):566-568.

Bender, Ruben R; Muth, Anke; Schneider, Irene C; Friedel, Thorsten; Hartmann, Jessica; Plückthun, Andreas; Maisner, Andrea; Buchholz, Christian J (2016). Receptor-targeted nipah virus glycoproteins improve cell-type selective gene delivery and reveal a preference for membrane-proximal cell attachment. PLoS Pathogens, 12(6):e1005641.

Personnic, Nicolas; Bärlocher, Kevin; Finsel, Ivo; Hilbi, Hubert (2016). Subversion of retrograde trafficking by translocated pathogen effectors. Trends in Microbiology, 24(6):450-462.

Margot, Heike; Tasara, Taurai; Zwietering, M H; Joosten, Han; Stephan, Roger (2016). Effects of different media on the enrichment of low numbers of Shiga toxin-producing Escherichia coli in mung bean sprouts and on the development of the sprout microbiome. International Journal of Food Microbiology, 232:26-34.

Yu, Xiao-Lin; Chan, Yuki; Zhuang, Long-Fei; Lai, Hong-Chang; Lang, Niklaus P; Lacap-Bugler, Donnabella C; Leung, W Keung; Watt, Rory M (2016). Distributions of Synergistetes in clinically-healthy and diseased periodontal and peri-implant niches. Microbial Pathogenesis, 94:90-103.

Bostanci, Nagihan; Thurnheer, T; Belibasakis, G N; Curtis, M A; Kilian, M; Marsh, P D; Kinane, D F; Mombelli, A (2016). Tribute. Molecular Oral Microbiology, 31(3):205-206.

Johler, Sophia; Stephan, Roger; Althaus, Denise; Ehling-Schulz, Monika; Grunert, Tom (2016). High-resolution subtyping of Staphylococcus aureus strains by means of Fourier-transform infrared spectroscopy. Systematic and Applied Microbiology, 39(3):189-194.

Greber, Urs F (2016). Virus and host mechanics support membrane penetration and cell entry. Journal of Virology, 90(8):3802-3805.

Bangerter, Patrick Daniel; Sidler, Xaver; Perreten, Vincent; Overesch, Gudrun (2016). Longitudinal study on the colonisation and transmission of methicillin-resistant Staphylococcus aureus in pig farms. Veterinary Microbiology, 183:125-134.

Naujoks, Jan; Tabeling, Christoph; Dill, Brian D; Hoffmann, Christine; Brown, Andrew S; Kunze, Mareike; Kempa, Stefan; Peter, Andrea; Mollenkopf, Hans-Joachim; Dorhoi, Anca; Kershaw, Olivia; Gruber, Achim D; Sander, Leif E; Witzenrath, Martin; Herold, Susanne; Nerlich, Andreas; Hocke, Andreas C; van Driel, Ian; Suttorp, Norbert; Bedoui, Sammy; Hilbi, Hubert; Trost, Matthias; Opitz, Bastian (2016). IFNs modify the proteome of legionella-containing vacuoles and restrict infection via IRG1-derived itaconic acid. PLoS Pathogens, 12(2):e1005408.

Willi, Barbara; Spiri, Andrea Monika; Meli, Marina L; Samman, Ayman; Hoffmann, Karolin; Sydler, Titus; Cattori, Valentino; Graf, Felix; Diserens, Kevin A; Padrutt, Isabelle; Nesina, Stefanie; Berger, Alice; Ruetten, Maja; Riond, Barbara; Hosie, Margaret J; Hofmann-Lehmann, Regina (2016). Molecular characterization and virus neutralization patterns of severe, non-epizootic forms of feline calicivirus infections resembling virulent systemic disease in cats in Switzerland and in Liechtenstein. Veterinary Microbiology, 182:202-212.

Yakimovich, Artur; Yakimovich, Yauhen; Schmid, Michael; Mercer, Jason; Sbalzarini, Ivo F; Greber, Urs F (2016). Infectio: a Generic Framework for Computational Simulation of Virus Transmission between Cells. mSphere, 1(1):e00078-15.

Mohanty, Soumitra; Dal Molin, Michael; Ganguli, Geetanjali; Padhi, Avinash; Jena, Prajna; Selchow, Petra; Sengupta, Srabasti; Meuli, Michael; Sander, Peter; Sonawane, Avinash (2016). Mycobacterium tuberculosis EsxO (Rv2346c) promotes bacillary survival by inducing oxidative stress mediated genomic instability in macrophages. Tuberculosis, 96:44-57.

Guevara Soto, Maricruz; Vidondo, Beatriz; Vaughan, Lloyd; Seth-Smith, Helena; Nufer, Lisbeth; Segner, Helmut; Rubin, J F; Schmidt-Posthaus, Heike (2016). The emergence of epitheliocystis in the upper Rhone region: evidence for Chlamydiae in wild and farmed salmonid populations. Archives of Microbiology, 198(4):315-324.

Fehr, A; Ruetten, M; Seth-Smith, H; Nufer, Lisbeth; Voegtlin, A; Lehner, Angelika; Greub, Gilbert; Crosier, P; Neuhauss, S C F; Vaughan, Lloyd (2016). A zebrafish model for Chlamydia infection with the obligate intracellular pathogen Waddlia chondrophila. Frontiers in Microbiology:7:1829.

Kohl, Alain; Pondeville, Emilie; Schnettler, Esther; Crisanti, Andrea; Supparo, Clelia; Christophides, George K; Kersey, Paul J; Maslen, Gareth L; Takken, Willem; Koenraadt, Constantianus J M; Oliva, Clelia F; Busquets, Nuria; Abad, F Xavier; Failloux, Anna-Bella; Levashina, Elena A; Wilson, Anthony J; Veronesi, Eva; Pichard, Maëlle; Arnaud Marsh, Sarah; Simard, Frédéric; Vernick, Kenneth D (2016). Advancing vector biology research: a community survey for future directions, research applications and infrastructure requirements. Pathogens and Global Health, 110(4-5):164-172.

Rout, Samuel; Zumthor, Jon Paulin; Schraner, Elisabeth M; Faso, Carmen; Hehl, Adrian B (2016). An interactome-centered protein discovery approach reveals novel components involved in mitosome function and homeostasis in giardia lamblia. PLoS Pathogens, 12(12):e1006036.

Sybesma, Wilbert; Zbinden, Reinhard; Chanishvili, Nino; Kutateladze, Mzia; Chkhotua, Archil; Ujmajuridze, Aleksandre; Mehnert, Ulrich; Kessler, Thomas M (2016). Bacteriophages as Potential Treatment for Urinary Tract Infections. Frontiers in Microbiology, 7:465.

Reimann, Regina R; Sonati, Tiziana; Hornemann, Simone; Herrmann, Uli S; Arand, Michael; Hawke, Simon; Aguzzi, Adriano (2016). Differential toxicity of antibodies to the prion protein. PLoS Pathogens, 12(1):e1005401.

Pinto-Carbó, Marta; Sieber, Simon; Dessein, Steven; Wicker, Thomas; Verstraete, Brecht; Gademann, Karl; Eberl, Leo; Carlier, Aurelien (2016). Evidence of horizontal gene transfer between obligate leaf nodule symbionts. The ISME journal, 10(9):2092-2105.

García, Patricia; Malorny, Burkhard; Rodicio, M Rosario; Stephan, Roger; Hächler, Herbert; Guerra, Beatriz; Lucarelli, Claudia (2016). Horizontal acquisition of a multidrug-resistance module (R-type ASSuT) is responsible for the monophasic phenotype in a widespread clone of Salmonella serovar 4,[5],12:i:-. Frontiers in Microbiology, 7:680.

Meyer Sauteur, Patrick M; Unger, Wendy W J; Nadal, David; Berger, Christoph; Vink, Cornelis; van Rossum, Annemarie M C (2016). Infection with and carriage of Mycoplasma pneumoniae in children. Frontiers in Microbiology:7:329.

Pachathundikandi, Suneesh Kumar; Müller, Anne; Backert, Steffen (2016). Inflammasome activation by helicobacter pylori and its implications for persistence and immunity. In: Backert, Steffen. Inflammasome Signaling and Bacterial Infections. Germany: Springer, 117-131.

Schell, Ursula; Simon, Sylvia; Hilbi, Hubert (2016). Inflammasome recognition and regulation of the legionella flagellum. Current topics in microbiology and immunology, 397:161-181.

Thurnheer, T; Bostanci, N; Belibasakis, G N (2016). Microbial dynamics during conversion from supragingival to subgingival biofilms in an in vitro model. Molecular Oral Microbiology, 31(2):125-135.

Stopnisek, Nejc; Zühlke, Daniela; Carlier, Aurélien; Barberán, Albert; Fierer, Noah; Becher, Dörte; Riedel, Katharina; Eberl, Leo; Weisskopf, Laure (2016). Molecular mechanisms underlying the close association between soil Burkholderia and fungi. The ISME journal, 10(1):253-264.

Margot, Heike; Stephan, Roger; Tasara, Taurai (2016). Mungo bean sprout microbiome and changes associated with culture based enrichment protocols used in detection of Gram-negative foodborne pathogens. Microbiome, 4(1):48.

Arora, Natasha; Schuenemann, Verena J; Jäger, Günter; Peltzer, Alexander; Seitz, Alexander; Herbig, Alexander; Strouhal, Michal; Grillová, Linda; Sánchez-Busó, Leonor; Kühnert, Denise; Bos, Kirsten I; Davis, Leyla Rivero; Mikalová, Lenka; Bruisten, Sylvia; Komericki, Peter; French, Patrick; Grant, Paul R; Pando, María A; Vaulet, Lucía Gallo; Fermepin, Marcelo Rodríguez; Martinez, Antonio; Centurion Lara, Arturo; Giacani, Lorenzo; Norris, Steven J; Šmajs, David; Bosshard, Philipp P; González-Candelas, Fernando; Nieselt, Kay; Krause, Johannes; Bagheri, Homayoun C (2016). Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster. Nature Microbiology, 2:16245.

Häuslein, Ina; Manske, Christian; Goebel, Werner; Eisenreich, Wolfgang; Hilbi, Hubert (2016). Pathway analysis using (13) C-glycerol and other carbon tracers reveals a bipartite metabolism of Legionella pneumophila. Molecular Microbiology, 100(2):229-246.

Leonard, Cory Ann; Dewez, Frederic; Borel, Nicole (2016). Penicillin g-induced chlamydial stress response in a porcine strain of chlamydia pecorum. International Journal of Microbiology, 2016:3832917.

Dirren, Sebastian; Posch, Thomas (2016). Promiscuous and specific bacterial symbiont acquisition in the amoeboid genus Nuclearia (Opisthokonta). FEMS Microbiology Ecology, 92(8):fiw105.

Rampini, Silvana K; Zbinden, Andrea; Speck, Roberto F; Bloemberg, Guido V (2016). Similar efficacy of broad-range ITS PCR and conventional fungal culture for diagnosing fungal infections in non-immunocompromised patients. BMC Microbiology, 16(1):132.

Merz, Axel; Stephan, Roger; Johler, Sophia (2016). Staphylococcus aureus isolates from goat and sheep milk seem to be closely related and differ from isolates detected among bovine milk. Frontiers in Microbiology, 7:319.

Carlier, Aurelien; Fehr, Linda; Pinto, Marta; Schäberle, Till; Reher, Raphael; Dessein, Steven; König, Gabriele; Eberl, Leo (2016). The genome analysis of Candidatus Burkholderia crenata reveals that secondary metabolism may be a key function of the Ardisia crenata leaf nodule symbiosis. Environmental Microbiology, 18(8):2507-2522.

Burgess, C M; Gianotti, A; Gruzdev, N; Holah, J; Knøchel, S; Lehner, A; Margas, E; Schmitz Esser, S; Sela (Saldinger), S; Tresse, O (2016). The response of foodborne pathogens to osmotic and desiccation stresses in the food chain. International Journal of Food Microbiology, 221:37-53.

Schell, Ursula; Simon, Sylvia; Sahr, Tobias; Hager, Dominik; Albers, Michael F; Kessler, Aline; Fahrnbauer, Felix; Trauner, Dirk; Hedberg, Christian; Buchrieser, Carmen; Hilbi, Hubert (2016). The α-hydroxyketone LAI-1 regulates motility, Lqs-dependent phosphorylation signaling and gene expression of Legionella pneumophila. Molecular Microbiology, 99(4):778-793.

Hornok, Sándor; Kartali, Kitti; Takács, Nóra; Hofmann-Lehmann, Regina (2016). Uneven seasonal distribution of Babesia canis and its two 18S rDNA genotypes in questing Dermacentor reticulatus ticks in urban habitats. Ticks and Tick-borne Diseases, 7(5):694-697.

Hunziker, Sibylle; Stephan, Roger (2016). Untersuchungen zur mikrobiologischen Qualität von erhitzten Lebensmitteln aus Bataillonsküchen der Schweizer Armee. Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 67(4):96-100.

2015

Birch, Andrew Nicholas; Casacuberta, Josep; De Schrijver, Adinda; Gathmann, Achim; Gralak, Mikolaj Antoni; Guerche, Philippe; Jones, Huw; Manachini, Barbara; Messéan, Antoine; Naegeli, Hanspeter; Ebbesen Nielsen, Elsa; Fabien Nogué, Fabien; Robaglia, Christophe; Rostoks, Nils; Sweet, Jeremy; Tebbe, Christoph; Visioli, Francesco; Wal, Jean-Michel (2015). Part C notification (reference C/NL/13/01) from Suntory Holdings Limited for the import, distribution and retailing of carnation SHD-27531-4 cut flowers with modified petal colour for ornamental use. EFSA Journal, 13(12):4358.

Tripathi, S; Pohl, M O; Zhou, Y; Rodriguez-Frandsen, A; Wang, G; Stein, D A; Moulton, H M; Che, J; Mulder, L C F; Yangüez, E; Andenmatten, D; Pache, L; Manicassamy, B; Albrecht, R A; Gonzalez, M G; Nguyen, Quy; Brass, A; Elledge, S; White, M; Shapira, S; Hacohen, N; Karlas, A; Meyer, T; Shales, M; Gatorano, A; Johnson, J R; Jang, G; Johnson, T; Verschueren, E; Sanders, D; Krogan, N; Shaw, M; König, R; Stertz, S; García-Sastre, A; Chanda, S K; DeJesus, P (2015). Meta- and orthogonal integration of influenza "OMICs" data defines a role for UBR4 in virus budding. Cell Host & Microbe, 18(6):723-735.

Birch, Andrew Nicholas; Casacuberta, Josep; De Schrijver, Adinda; Gathmann, Achim; Gralak, Mikolaj Antoni; Guerche, Philippe; Jones, Huw; Manachini, Barbara; Messéan, Antoine; Naegeli, Hanspeter; Ebbesen Nielsen, Elsa; Nogué, Fabien; Robaglia, Christophe; Rostoks, Nils; Sweet, Jeremy; Tebbe, Christoph; Visioli, Francesco; Wal, Jean-Michel (2015). Scientific Opinion on an application by Syngenta (EFSA-GMO-DE-2009-66) for placing on the market of herbicide tolerant and insect resistant maize Bt11 × MIR162 × MIR604 × GA21 and subcombinations independently of their origin for food and feed uses, import and processing under Regulation (EC) No 1829/20031. EFSA Journal, 13(12):4297.

Vayssier-Taussat, Muriel; Kazimirova, Maria; Hubalek, Zdenek; Hornok, Sándor; Farkas, Robert; Cosson, Jean-François; Bonnet, Sarah; Vourch, Gwenaël; Gasqui, Patrick; Mihalca, Andrei Daniel; Plantard, Olivier; Silaghi, Cornelia; Cutler, Sally; Rizzoli, Annapaola (2015). Emerging horizons for tick-borne pathogens: from the 'one pathogen-one disease' vision to the pathobiome paradigm. Future Microbiology, 10:2033-2043.

Simon, Sylvia; Schell, Ursula; Heuer, Natalie; Hager, Dominik; Albers, Michael F; Matthias, Jan; Fahrnbauer, Felix; Trauner, Dirk; Eichinger, Ludwig; Hedberg, Christian; Hilbi, Hubert (2015). Inter-kingdom signaling by the Legionella Quorum Sensing Molecule LAI-1 modulates cell migration through an IQGAP1-Cdc42-ARHGEF9-dependent pathway. PLoS Pathogens, 11(12):e1005307.

Brandenberg, Oliver F; Magnus, Carsten; Regoes, Roland R; Trkola, Alexandra (2015). The HIV-1 entry process: A stoichiometric view. Trends in Microbiology, 23(12):763-774.

Möllerherm, Helene; Neumann, Ariane; Schilcher, Katrin; Blodkamp, Stefanie; Zeitouni, Nathalie E; Dersch, Petra; Lüthje, Petra; Naim, Hassan Y; Zinkernagel, Annelies S; von Köckritz-Blickwede, Maren (2015). Yersinia enterocolitica-mediated degradation of neutrophil extracellular traps (NETs). FEMS Microbiology Letters, 362(23):fnv192.

Gregorovic, Goran; Boulden, Elizabeth A; Bosshard, Rachel; Elgueta Karstegl, Claudio; Skalsky, Rebecca; Cullen, Bryan R; Gujer, Cornelia; Rämer, Patrick; Münz, Christian; Farrell, Paul J (2015). Epstein-barr viruses (EBVs) deficient in EBV-encoded RNAs have higher levels of latent membrane protein 2 RNA expression in lymphoblastoid cell lines and efficiently establish persistent infections in humanized mice. Journal of Virology, 89(22):11711-11714.

Kreibich, Saskia; Emmenlauer, Mario; Fredlund, Jennifer; Rämö, Pauli; Münz, Christian; Dehio, Christoph; Enninga, Jost; Hardt, Wolf-Dietrich (2015). Autophagy Proteins Promote Repair of Endosomal Membranes Damaged by the Salmonella Type Three Secretion System 1. Cell Host & Microbe, 18(5):527-537.

Koch, Katrin N; Müller, Anne (2015). Helicobacter pylori activates the TLR2/NLRP3/caspase-1/IL-18 axis to induce regulatory T-cells, establish persistent infection and promote tolerance to allergens. Gut Microbes, 6(6):382-387.

Krause, Sascha; Niklaus, Pascal A; Badwan Morcillo, Sara; Meima Franke, Marion; Lüke, Claudia; Reim, Andreas; Bodelier, Paul L E (2015). Compositional and functional stability of aerobic methane consuming communities in drained and rewetted peat meadows. FEMS Microbiology Ecology, 91(11):fiv119.

Birch, Andrew Nicholas; Casacuberta, Josep; De Schrijver, Adinda; Gathmann, Achim; Gralak, Mikolaj Antoni; Guerche, Philippe; Jones, Huw; Manachini, Barbara; Messéan, Antoine; Naegeli, Hanspeter; Ebbesen Nielsen, Elsa; Nogué, Fabien; Robaglia, Christophe; Rostoks, Nils; Sweet, Jeremy; Tebbe, Christoph; Visioli, Francesco; Wal, Jean-Michel (2015). Risk assessment of new sequencing data on GM maize event MIR604. EFSA Journal:1-6.

Hardy, Anthony; Benford, Diane; PJM Noteborn, Hubert; Halldorsson, Thorhallur Ingi; Josef Schlatter, Josef; Solecki, Roland Alfred; Jeger, Michael; Knutsen, Helle Katrine; Simon More, Simon; Mortensen, Alicja; Naegeli, Hanspeter; Ockleford, Colin; Ricci, Antonia; Rychen, Guido; Silano, Vittorio; Turck, Dominique (2015). Risk profile related to production and consumption of insects as food and feed. EFSA Journal, 13(10):4257.

Birch,, Andrew Nicholas; Casacuberta, Josep; De Schrijver, Adinda; Gathmann, Achim; Gralak, Mikolaj Antoni; Guerche, Philippe; Jones, Huw; Manachini, Barbara; Messéan, Antoine; Naegeli, Hanspeter; Ebbesen Nielsen, Elsa; Nogué, Fabien; Robaglia, Christophe; Rostoks, Nils; weet, Jeremy S; Tebbe, Christoph; Visioli, Francesco; Wal, Jean-Michel (2015). Scientific Opinion on an application (EFSA-GMO-NL-2010-85) for the placing on the market of MON 87769 × MON 89788 soybean, genetically modified to contain stearidonic acid and be tolerant to glyphosate for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 13(10):4256.

Turkington, H L; Juozapaitis, M; Kerry, P S; Aydillo, T; Ayllon, J; García-Sastre, A; Schwemmle, M; Hale, B G (2015). Novel bat influenza virus NS1 proteins bind double-stranded RNA and antagonize host innate immunity. Journal of Virology, 89(20):10696-10701.

Zhang, Naili; Wan, Shiqiang; Guo, Jixun; Han, Guodong; Gutknecht, Jessica; Schmid, Bernhard; Yu, Liang; Liu, Weixing; Bi, Jie; Wang, Zhen; Ma, Keping (2015). Precipitation modifies the effects of warming and nitrogen addition on soil microbial communities in northern Chinese grasslands. Soil Biology and Biochemistry, 89:12-23.

Birger, Ruthie B; Kouyos, Roger D; Cohen, Ted; Griffiths, Emily C; Huijben, Silvie; Mina, Michael; Volkova, Victoriya; Grenfell, Bryan; Metcalf, C Jessica E (2015). The potential impact of coinfection on antimicrobial chemotherapy and drug resistance. Trends in Microbiology, 23(9):537-44.

Belibasakis, G N; Kast, Jeannette I; Thurnheer, Thomas; Akdis, Cezmi A; Bostanci, Nagihan (2015). The expression of gingival epithelial junctions in response to subgingival biofilms. Virulence, 6(7):704-709.

Arpaia, Salvatore; et al (2015). Scientific Opinion on an application (EFSA-GMO-BE-2011-98) for the placing on the market of herbicide-tolerant genetically modified soybean FG72 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Bayer CropScience. EFSA Journal, 13(7):4167.

Arpaia, Salvatore; Birch, Andrew Nicholas Edmund; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, József; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Kaare Magne; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2015). Scientific Opinion on an application (Reference EFSA-GMO-NL-2011-100) for the placing on the market of the herbicide-tolerant, increased oleic acid genetically modified soybean MON 87705 × MON 89788 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 13(7):4178.

Arpaia, Salvatore; Birch, Andrew Nicholas Edmund; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, József; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2015). Scientific Opinion on an application (EFSA-GMO-NL-2010-80) for the placing on the market of herbicide-tolerant genetically modified maize NK603 × T25 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 13(7):4165.

Reh, Lucia; Magnus, Carsten; Schanz, Merle; Weber, Jacqueline; Uhr, Therese; Rusert, Peter; Trkola, Alexandra (2015). Capacity of broadly neutralizing antibodies to inhibit HIV-1 cell-cell transmission is strain- and epitope-dependent. PLoS Pathogens, 11(7):e1004966.

Luisoni, Stefania; Suomalainen, Maarit; Boucke, Karin; Tanner, Lukas B; Wenk, Markus R; Guan, Xue Li; Grzybek, Michał; Coskun, Ünal; Greber, Urs F (2015). Co-option of membrane wounding enables virus penetration into cells. Cell Host & Microbe, 18(1):75-85.

Keil, Daniel; Niklaus, Pascal A; von Riedmatten, Lars R; Boeddinghaus, Runa S; Dormann, Carsten F; Scherer-Lorenzen, Michael; Kandeler, Ellen; Marhan, Sven (2015). Effects of warming and drought on potential N2O emissions and denitrifying bacteria abundance in grasslands with different land-use. FEMS Microbiology Ecology, 91(7):fiv066.

Arpaia, Salvatore; Birch, Andrew Nicholas Edmund; Chesson, Andrew; Patrick du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, József; Kleter, Gijs; Løvik, Martinus; Messéan, Antoine; Perry, Joe; Tebbe, Christoph; Naegeli, H (2015). Updating risk management recommendations to limit exposure of non-target Lepidoptera of conservation concern in protected habitats to Bt-maize pollen. EFSA Journal, 13(7):4127.

Sommerstein, R; Kohler, P; Wilhelm, M J; Kuster, S P; Sax, H (2015). Factors associated with methicillin-resistant coagulase-negative staphylococci as causing organisms in deep sternal wound infections after cardiac surgery. New Microbes and New Infections, 6:15-21.

Myburgh, Renier; Ivic, Sandra; Pepper, Michael S; Gers-Huber, Gustavo; Li, Duo; Audigé, Annette; Rochat, Mary-Aude; Jaquet, Vincent; Regenass, Stephan; Manz, Markus G; Salmon, Patrick; Krause, Karl-Heinz; Speck, Roberto F (2015). Lentivector knockdown of CCR5 in hematopoietic stem and progenitor cells confers functional and persistent HIV-1 resistance in humanized mice. Journal of Virology, 89(13):6761-6772.

König, R; Stertz, S (2015). Recent strategies and progress in identifying host factors involved in virus replication. Current Opinion in Microbiology, (26):79-88.

Arpaia, Salvatore; Nicholas, Andrew; Birch, Edmund; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, József; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2015). Scientific Opinion on application (EFSA-GMO-NL-2012-108) for the placing on the market of the herbicide-tolerant genetically modified soybean MON 87708 × MON 89788 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 13(6):4136.

Arpaia, Salvatore; Nicholas, Andrew; Birch, Edmund; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, József; Gijs Kleter, Gijs; Løvik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesná, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2015). Scientific Opinion on the application (EFSA-GMO-BE-2012-110) for the placing on the market of tissue-selective herbicide-tolerant genetically modified maize MON 87427 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 13(6):4130.

Edinger, T O; Pohl, M O; Yangüez, E; Stertz, S (2015). Cathepsin W is required for escape of influenza a virus from late endosomes. mBio, 6(3):e00297-15.

Fehr, Alexander; Eshwar, Athmanya K; Neuhauss, Stephan Cf; Ruetten, Maja; Lehner, Angelika; Vaughan, Lloyd (2015). Evaluation of zebrafish as a model to study the pathogenesis of the opportunistic pathogen Cronobacter turicensis. Emerging Microbes and Infections, 4(5):e29.

Alves, Lisa; Khosravi, Mojtaba; Avila, Mislay; Ader-Ebert, Nadine; Bringolf, Fanny; Zurbriggen, Andreas; Vandevelde, Marc; Plattet, Philippe (2015). SLAM- and nectin-4-independent noncytolytic spread of canine distemper virus in astrocytes. Journal of Virology, 89(10):5724-5733.

Ader-Ebert, Nadine; Khosravi, Mojtaba; Herren, Michael; Avila, Mislay; Alves, Lisa; Bringolf, Fanny; Örvell, Claes; Langedijk, Johannes P; Zurbriggen, Andreas; Plemper, Richard K; Plattet, Philippe (2015). Sequential conformational changes in the morbillivirus attachment protein initiate the membrane fusion process. PLoS Pathogens, 11(5):e1004880.

Finsel, Ivo; Hilbi, Hubert (2015). Formation of a pathogen vacuole according to Legionella pneumophila: how to kill one bird with many stones. Cellular Microbiology, 17(7):935-950.

Lopez, Rodrigo; Hujoel, Philippe; Belibasakis, Georgios N (2015). On putative periodontal pathogens: an epidemiological perspective. Virulence, 6(3):249-257.

Harrison, Christopher F; Kicka, Sébastien; Kranjc, Agata; Finsel, Ivo; Chiriano, Gianpaolo; Ouertatani-Sakouhi, Hajer; Soldati, Thierry; Scapozza, Leonoardo; Hilbi, Hubert (2015). Adrenergic antagonists restrict replication of Legionella. Microbiology, 161(7):1392-1406.

Belibasakis, Georgios N; Mylonakis, Eleftherios (2015). Oral infections: clinical and biological perspectives. Virulence, 6(3):173-176.

Eichenberger, Ramon Marc; Deplazes, Peter; Mathis, Alexander (2015). Ticks on dogs and cats: a pet owner-based survey in a rural town in northeastern Switzerland. Ticks and Tick-borne Diseases, 6(3):267-271.

Bostanci, Nagihan; Bao, Kai; Wahlander, Asa; Grosmann, Jonas; Thurnheer, Thomas; Belibasakis, Georgios N (2015). Secretome of gingival epithelium in response to subgingival biofilms. Molecular Oral Microbiology, 30(4):323-335.

Arpaia, Salvatore; Birch, Nicholas; Chesson, Andrew; du Jardin,, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesná, Jaroslava; Perry, Joe; Tebbe, Christoph (2015). Scientific Opinion on the annual post-market environmental monitoring (PMEM) report from Monsanto Europe S.A. on the cultivation of genetically modified maize MON 810 in 2013. EFSA Journal, 13(3):4039.

Metcalf, C J E; Birger, R B; Funk, S; Kouyos, R D; Lloyd-Smith, J O; Jansen, V A A (2015). Five challenges in evolution and infectious diseases. Epidemics, 10:40-44.

Wyrzucki, Arkadiusz; Bianchi, Matteo; Kohler, Ines; Steck, Marco; Hangartner, Lars (2015). Heterosubtypic antibodies to influenza A virus have limited activity against cell-bound virus but are not impaired by strain-specific serum antibodies. Journal of Virology, 89(6):3136-3144.

Yang, Wan-Lin; Kouyos, Roger D; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Scherrer, Alexandra U; Shilaih, Mohaned; Hinkley, Trevor; Petropoulos, Christos; Bonhoeffer, Sebastian; Günthard, Huldrych F (2015). Persistence of transmitted HIV-1 drug resistance mutations associated with fitness costs and viral genetic backgrounds. PLoS Pathogens, 11(3):e1004722.

Bethge, Tobias; Hachemi, Helen A; Manzetti, Julia; Gosert, Rainer; Schaffner, Walter; Hirsch, Hans H (2015). Sp1 sites in the noncoding control region of BK polyomavirus are key regulators of bidirectional viral early and late gene expression. Journal of Virology, 89(6):3396-3411.

Akcalı, Aliye; Bostanci, Nagihan; Özçaka, Özgun; Öztürk-Ceyhan, Banu; Gümüş, Pınar; Tervahartiala, Taina; Husu, Heidi; Buduneli, Nurcan; Sorsa, Timo; Belibasakis, Georgios N (2015). Elevated matrix metalloproteinase-8 in saliva and serum in polycystic ovary syndrome and association with gingival inflammation. Innate immunity, 21(6):619-625.

Charalampakis, Georgios; Belibasakis, Georgios N (2015). Microbiome of peri-implant infections: lessons from conventional, molecular and metagenomic analyses. Virulence, 6(3):183-187.

Zehnder, Matthias; Belibasakis, Georgios N (2015). On the dynamics of root canal infections - what we understand and what we don't. Virulence, 6(3):216-222.

Avila, Mislay; Khosravi, Mojtaba; Alves, Lisa; Ader-Ebert, Nadine; Bringolf, Fanny; Zurbriggen, Andreas; Plemper, Richard K; Plattet, Philippe (2015). Canine distemper virus envelope protein interactions modulated by hydrophobic residues in the fusion protein globular head. Journal of Virology, 89(2):1445-1451.

Hepojoki, J; Kipar, A; Korzyukov, Y; Bell-Sakyi, L; Vapalahti, O; Hetzel, U (2015). Replication of Boid Inclusion Body Disease-Associated Arenaviruses Is Temperature Sensitive in both Boid and Mammalian Cells. Journal of Virology, 89(2):1119-1128.

Bao, Kai; Papadimitropoulos, Adam; Akgül, Baki; Belibasakis, Georgios N; Bostanci, Nagihan (2015). Establishment of an oral infection model resembling the periodontal pocket in a perfusion bioreactor system. Virulence, 6(3):265-273.

Brandenberg, Oliver F; Magnus, Carsten; Rusert, Peter; Regoes, Roland R; Trkola, Alexandra (2015). Different infectivity of HIV-1 strains is linked to number of envelope trimers required for entry. PLoS Pathogens, 11(1):e1004595.

Kanengoni, A; Chimonyo, M; Tasara, Taurai; Chimonyo, P; Chapwanya, A; Ndimba, B; Dzama, K (2015). A comparison of faecal microbial populations of South African Windsnyer-type indigenous pigs (SAWIP) and Large White x Landrace (LW x LR) crosses fed diets containing ensiled maize cobs. FEMS Microbiology Letters, 362(13):fnv100.

Schauer, K; Lehner, Angelika; Dietrich, R; Kleinsteuber, I; Canals, R; Zurfluh, Katrin; Weiner, K; Märtlbauer, E (2015). A cronobacter turicensis O1 antigen specific monoclonal antibody inhibits bacterial motility and entry into epithelial cells. Infection and Immunity, 83(3):876-887.

Zurfluh, Katrin; Power, K; Klumpp, Jochen; Wang, J; Fanning, Seammus; Stephan, Roger (2015). A novel Tn3-like composite transposon harbouring blaVIM-1 in Klebsiella pneumoniae ssp. pneumoniae isolated from river water. Microbial Drug Resistance, 21(1):43-49.

Seyffert, Michael; Glauser, Daniel L; Tobler, Kurt; Georgiev, Oleg; Vogel, Rebecca; Vogt, Bernd; Agundez, Leticia; Linden, Michael; Büning, Hildegard; Ackermann, Mathias; Fraefel, Cornel (2015). Adeno-associated virus type 2 Rep68 can bind to consensus rep-binding sites on the herpes simplex virus 1 genome. Journal of Virology, 89(21):11150-11158.

Trautwein-Weidner, Kerstin; Gladiator, André; Kirchner, Florian R; Becattini, Simone; Rülicke, Thomas; Sallusto, Federica; LeibundGut-Landmann, Salomé (2015). Antigen-specific Th17 cells are primed by distinct and complementary dendritic cell subsets in oropharyngeal candidiasis. PLoS Pathogens, 11(10):e1005164.

Nüesch-Inderbinen, Magdalena; Zurfluh, Katrin; Peterhans, Sophie; Hächler, Herbert; Stephan, Roger (2015). Assessment of the prevalence of extended-spectrum β-Lactamase-producing Enterobacteriaceae in ready-to-eat salads, fresh-cut fruit, and sprouts from the Swiss market. Journal of Food Protection, 78(6):1178-1181.

Grant, Dawn M; Dagleish, Mark P; Bachofen, Claudia; Boag, Brian; Deane, David; Percival, Ann; Zadoks, Ruth N; Russell, George C (2015). Assessment of the rabbit as a wildlife reservoir of bovine viral diarrhea virus: serological analysis and generation of trans-placentally infected offspring. Frontiers in Microbiology:6:1000.

Takeuchi, Yayoi; Chaffron, Samuel; Salcher, Michaela M; Shimizu-Inatsugi, Rie; Kobayashi, Masaki J; Diway, Bibian; von Mering, Christian; Pernthaler, Jakob; Shimizu, Kentaro K (2015). Bacterial diversity and composition in the fluid of pitcher plants of the genus Nepenthes. Systematic and Applied Microbiology, 38(5):330-339.

Peng, Silvio; Weik, D; Stephan, Roger; Hummerjohann, J (2015). Behaviour of an Escherichia coli strain deleted in the salt stress response gene kdpA during production and ripening of a semi-hard cheese. Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 66(2):46-50.

Taylor-Brown, Alyce; Rüegg, Simon; Polkinghorne, Adam; Borel, Nicole (2015). Characterisation of Chlamydia pneumoniae and other novel chlamydial infections in captive snakes. Veterinary Microbiology, 178(1-2):88-93.

Sarno, Eleonora; Tasara, Taurai; Stephan, Roger; Zweifel, Claudio (2015). Characteristics of Listeria monocytogenes strains isolated from fecal samples of healthy slaughtered livestock. Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 66(4):113-116.

Nüesch-Inderbinen, Magdalena; Cernela, Nicole; Hächler, Herbert; Stephan, Roger (2015). Characteristics of Salmonella enterica serotype Schwarzengrund associated with human infections in Switzerland: 2006-2010. Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 66:56-60.

Wang, J; Stephan, Roger; Zurfluh, Katrin; Hächler, Herbert; Fanning, Seammus (2015). Characterization of the genetic environment of bla ESBL genes, integrons and toxin-antitoxin systems identified on large transferrable plasmids in multi-drug resistant Escherichia coli. Frontiers in Microbiology:5:716.

Münz, Christian (2015). EBV Infection of Mice with Reconstituted Human Immune System Components. Current topics in microbiology and immunology, 391:407-423.

Coci, Manuela; Odermatt, Nina; Salcher, Michaela M; Pernthaler, Jakob; Corno, Gianluca (2015). Ecology and distribution of thaumarchaea in the deep hypolimnion of Lake Maggiore. Archaea, 2015:590434.

Li, Shuo; Plebanski, Magdalena; Smooker, Peter; Gowans, Eric J (2015). Editorial: why vaccines to HIV, HCV, and Malaria have so far failed—challenges to developing vaccines against immunoregulating pathogens. Frontiers in Microbiology, 6:1318.

Margot, Heike; Zwietering, Marcel; Joosten, Han; O'Mahony, E; Stephan, Roger (2015). Evaluation of different buffered peptone water (BPW) based enrichment broths for detection of Gram-negative foodborne pathogens from various food matrices. International Journal of Food Microbiology, 214:109-115.

Cernela, Nicole; Zweifel, Claudio; Stephan, Roger (2015). Evaluation of the CHROMagarTM STEC medium for the detection of Shiga toxin-producing Escherichia coli. Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 66(2):28-32.

Boesch, A; Cattori, V; Riond, Barbara; Willi, Barbara; Meli, Marina L; Rentsch, K M; Hosie, M J; Hofmann-Lehmann, Regina; Lutz, Hans (2015). Evaluation of the effect of short-term treatment with the integrase inhibitor raltegravir (Isentress™) on the course of progressive feline leukemia virus infection. Veterinary Microbiology, 175(2-4):167-178.

Neuenschwander, Stefan M; Salcher, Michaela M; Pernthaler, Jakob (2015). Fluorescence in situ hybridization and sequential catalyzed reporter deposition (2C-FISH) for the flow cytometric sorting of freshwater ultramicrobacteria. Frontiers in Microbiology, 6:247.

Parlange, Francis; Roffler, Stefan; Menardo, Fabrizio; Ben-David, Roi; Bourras, Salim; McNally, Kaitlin E; Oberhaensli, Simone; Stirnweis, Daniel; Buchmann, Gabriele; Wicker, Thomas; Keller, Beat (2015). Genetic and molecular characterization of a locus involved in avirulence of Blumeria graminis f. sp. tritici on wheat Pm3 resistance alleles. Fungal Genetics and Biology, 82:181-192.

Säle, Verena; Aguilera, Paula; Laczko, Endre; Mäder, Paul; Berner, Alfred; Zihlmann, Urs; van der Heijden, Marcel G A; Oehl, Fritz (2015). Impact of conservation tillage and organic farming on the diversity of arbuscular mycorrhizal fungi. Soil Biology and Biochemistry, 84:38-52.

Opota, Onya; Vanrompay, Daisy; Greub, Gilbert; Branley, James; Longbottom, David; Erard, Veronique; Jaton, Katia; Borel, Nicole (2015). Improving the molecular diagnosis of Chlamydia psittaci and Chlamydia abortus infection with a species-specific duplex real-time PCR. Journal of Medical Microbiology, 64(10):1174-1185.

Eshwar, A; Tasara, Taurai; Stephan, Roger; Lehner, Angelika (2015). Influence of FkpA variants on survival and replication of Cronobacter spp. in human macrophages. Research in Microbiology, 166(3):186-195.

Lünemann, Anna; Rowe, Martin; Nadal, David (2015). Innate Immune Recognition of EBV. In: Münz, Christian. Epstein Barr Virus Volume 2 : One Herpes Virus: Many Diseases. Switzerland: Springer, 265-287.

Dubern, Jean-Frédéric; Cigana, Cristina; De Simone, Maura; Lazenby, James; Juhas, Mario; Schwager, Stephan; Bianconi, Irene; Döring, Gerd; Eberl, Leo; Williams, Paul; Bragonzi, Alessandra; Cámara, Miguel (2015). Integrated whole-genome screening forPseudomonas aeruginosavirulence genes using multiple disease models reveals that pathogenicity is host specific. Environmental Microbiology, 17(11):4379-4393.

Thurnheer, Thomas; Belibasakis, Georgios N (2015). Integration of non-oral bacteria into in vitro oral biofilms. Virulence, 6(3):258-264.

Salcher, Michaela M; Ewert, Claudia; Šimek, Karel; Kasalický, Vojtěch; Posch, Thomas (2015). Interspecific competition and protistan grazing affect the coexistence of freshwater betaproteobacterial strains. FEMS Microbiology Ecology, 92(2):fiv156.

Schmidt, Thomas S B; Matias Rodrigues, João F; von Mering, Christian (2015). Limits to robustness and reproducibility in the demarcation of operational taxonomic units. Environmental Microbiology, 17(5):1689-1706.

Birger, Ruthie; Kouyos, Roger; Dushoff, Jonathan; Grenfell, Bryan (2015). Modeling the effect of HIV coinfection on clearance and sustained virologic response during treatment for hepatitis C virus. Epidemics, 12:1-10.

Obiegala, Anna; Pfeffer, Martin; Pfister, Kurt; Karnath, Carolin; Silaghi, Cornelia (2015). Molecular examinations of Babesia microti in rodents and rodent-attached ticks from urban and sylvatic habitats in Germany. Ticks and Tick-borne Diseases, 6(4):445-449.

Bender, S Franz; Conen, Franz; van der Heijden, Marcel G A (2015). Mycorrhizal effects on nutrient cycling, nutrient leaching and N2O production in experimental grassland. Soil Biology and Biochemistry, 80:283-292.

Jurankova, Jana; Basso, Walter; Neumayerova, Helena; Frencova, Anita; Balaz, Vojtech; Deplazes, Peter; Koudela, Bretislav (2015). Predilection sites for Toxoplasma gondii in sheep tissues revealed by magnetic capture and real-time PCR detection. Food Microbiology, 52:150-153.

Münz, Christian (2015). Preface. Current topics in microbiology and immunology, 390(Pt 1):v-vi.

Nüesch-Inderbinen, Magdalena; Funk, J; Cernela, Nicole; Tasara, Taurai; Klumpp, Jochen; Schmidt, Herbert; Stephan, Roger (2015). Prevalence of Subtilase cytotoxin-encoding subAB variants among Shiga toxin-producing Escherichia coli strains isolated from wild ruminants and sheep differs from that of cattle and pigs and is predominated by the new allelic variant subAB2-2. International Journal of Medical Microbiology : IJMM, 305(1):124-128.

Herrmann, Uli S; Sonati, Tiziana; Falsig, Jeppe; Reimann, Regina R; Dametto, Paolo; O'Connor, Tracy; Li, Bei; Lau, Agnes; Hornemann, Simone; Sorce, Silvia; Wagner, Uli; Sanoudou, Despina; Aguzzi, Adriano (2015). Prion infections and anti-PrP antibodies trigger converging neurotoxic pathways. PLoS Pathogens, 11(2):e1004662.

Herweg, Jo-Ana; Hansmeier, Nicole; Otto, Andreas; Geffken, Anna C; Subbarayal, Prema; Prusty, Bhupesh K; Becher, Dörte; Hensel, Michael; Schaible, Ulrich E; Rudel, Thomas; Hilbi, Hubert (2015). Purification and proteomics of pathogen-modified vacuoles and membranes. Frontiers in Cellular and Infection Microbiology, 5:48.

Nüesch-Inderbinen, Magdalena; Cernela, N; Althaus, Denise; Hächler, Herbert; Stephan, Roger (2015). Salmonella enterica serovar Szentes, a rare serotype causing a 9-month outbreak in 2013 and 2014 in Switzerland. Foodborne Pathogens and Disease, 12(11):887-890.

Costanzo, N; Sarno, Eleonora; Peretti, V; Ciambrone, L; Casalinuovo, F; Santoro, A (2015). Serological and molecular investigation of swine hepatitis E virus in pigs raised in Southern Italy. Journal of Food Protection, 78(11):2099-2102.

Lanz, C; Yangüez, E; Andenmatten, D; Stertz, S (2015). Swine IFITM proteins potently inhibit influenza A virus replication. Journal of Virology, 89(1):863-869.

Klausmann, Stefanie; Sydler, Titus; Summerfield, Artur; Lewis, Fraser I; Weilenmann, Roseline; Sidler, Xaver; Brugnera, Enrico (2015). T-cell reprogramming through targeted CD4-coreceptor and T-cell receptor expression on maturing thymocytes by latent Circoviridae family member porcine circovirus type 2 cell infections in the thymus. Emerging Microbes and Infections, 4(3):e15.

Sihto, Henna-Maria; Tasara, Taurai; Stephan, Roger; Johler, Sophia (2015). Temporal expression of the staphylococcal enterotoxin D gene under NaCl stress conditions encountered during food production and preservation. FEMS Microbiology Letters, 362(6):fnv024.

Guyer, Anouk; De Vrieze, Mout; Bönisch, Denise; Gloor, Ramona; Musa, Tomke; Bodenhausen, Natacha; Bailly, Aurélien; Weisskopf, Laure (2015). The anti-phytophthora effect of selected potato-associated pseudomonas strains: from the laboratory to the field. Frontiers in Microbiology, 6:1309.

Salcher, Michaela M; Neuenschwander, Stefan M; Posch, Thomas; Pernthaler, Jakob (2015). The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign. The ISME journal, 9(11):2442-2453.

Zbinden, A; Bostanci, N; Belibasakis, G N (2015). The novel species Streptococcus tigurinus and its association with oral infection. Virulence, 6(3):177-182.

Hagedorn, Frank; Bruderhofer, Nadia; Ferrari, Adele; Niklaus, Pascal A (2015). Tracking litter-derived dissolved organic matter along a soil chronosequence using 14C imaging: Biodegradation, physico-chemical retention or preferential flow? Soil Biology and Biochemistry, 88:333-343.

De Vrieze, Mout; Pandey, Piyush; Bucheli, Thomas D; Varadarajan, Adithi R; Ahrens, Christian H; Weisskopf, Laure; Bailly, Aurélien (2015). Volatile organic compounds from native potato-associated pseudomonas as potential anti-oomycete agents. Frontiers in Microbiology, 6:1295.

2014

Arpaia, Salvatore; Birch, Andrew Nicholas Edmund; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Lieve, Herman; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, József; Kleter, Gijs; Løvik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesná, Jaroslava; Perry, Joe; Rostoks, Nils (2014). Scientific Opinion on a notification (reference C/NL/09/02) for the placing on the market of the genetically modified carnation IFD-26407-2 with a modified colour, for import of cut flowers for ornamental use, under Part C of Directive 2001/18/EC from Florigene. EFSA Journal, 12(12):3935.

Arpaia, Salvatore; Birch, Andrew Nicholas Edmund; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Lieve, Herman; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, József; Kleter, Gijs; Løvik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesná, Jaroslava; Perry, Joe; Rostoks, Nils (2014). Scientific Opinion on a notification (reference C/NL/09/01) for the placing on the market of the genetically modified carnation IFD-25958-3 with a modified colour, for import of cut flowers for ornamental use, under Part C of Directive 2001/18/EC from Florigene. EFSA Journal, 12(12):3934.

Dudnik, Alexey; Dudler, Robert (2014). Virulence determinants of Pseudomonas syringae strains isolated from grasses in the context of a small type III effector repertoire. BMC Microbiology, 14:304.

Egli, Adrian; Santer, Deanna M; O'Shea, Daire; Barakat, Khaled; Syedbasha, Mohammedyaseen; Vollmer, Madeleine; Baluch, Aliyah; Bhat, Rakesh; Groenendyk, Jody; Joyce, Michael A; Lisboa, Luiz F; Thomas, Brad S; Battegay, Manuel; Khanna, Nina; Mueller, Thomas; Tyrrell, D Lorne J; Houghton, Michael; Humar, Atul; Kumar, Deepali (2014). IL-28B is a Key Regulator of B- and T-Cell Vaccine Responses against Influenza. PLoS Pathogens, 10(12):e1004556.

Arpaia, Salvatore; Birch, Andrew Nicholas Edmund; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Lieve, Herman; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, József; Kleter, Gijs; Løvik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesná, Jaroslava; Perry, Joe; Rostoks, Nils (2014). Scientific Opinion on the use of existing environmental surveillance networks to support the post-market environmental monitoring of genetically modified plants. EFSA Journal, 12(11):3883.

Arpaia, Salvatore; Birch, Andrew Nicholas Edmund; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Lieve, Herman; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, József; Kleter, Gijs; Løvik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesná, Jaroslava; Perry, Joe; Rostoks, Nils (2014). Scientific Opinion on objections of a Member State to a notification (Reference C/NL/13/01) for the placing on the market of the genetically modified carnation SHD-27531-4 with a modified colour, for import of cut flowers for ornamental use, under Part C of Directive 2001/18/EC from Suntory Holdings Limited. EFSA Journal, 12(11):3878.

Roulin, Pascal S; Lötzerich, Mark; Torta, Federico; Tanner, Lukas B; van Kuppeveld, Frank J M; Wenk, Markus R; Greber, Urs F (2014). Rhinovirus uses a phosphatidylinositol 4-phosphate/cholesterol counter-current for the formation of replication compartments at the ER-Golgi interface. Cell Host & Microbe, 16(5):677-690.

Hartmann, Matthias N; Martarelli, Corinna S; Mast, Fred W; Stocker, Kurt (2014). Eye movements during mental time travel follow a diagonal line. Consciousness and Cognition, 30:201-209.

Münz, Christian (2014). Regulation of innate immunity by the molecular machinery of macroautophagy. Cellular Microbiology, 16(11):1627-1636.

Bao, Kai; Belibasakis, Georgios N; Thurnheer, Thomas; Aduse-Opoku, Joseph; Curtis, Michael A; Bostanci, Nagihan (2014). Role of Porphyromonas gingivalis gingipains in multi-species biofilm formation. BMC Microbiology, 14(1):258.

Sundqvist, Emilie; Buck, Dorothea; Warnke, Clemens; Albrecht, Eva; Gieger, Christian; Khademi, Mohsen; Lima Bomfim, Izaura; Fogdell-Hahn, Anna; Link, Jenny; Alfredsson, Lars; Søndergaard, Helle Bach; Hillert, Jan; Oturai, Annette B; Hemme, Bernhard; Kockum, Ingrid; Olsson, Tomas; Martin, Roland (2014). JC polyomavirus infection is strongly controlled by human leucocyte antigen class II variants. PLoS Pathogens, 10(4):e1004084.

Prasad, Vibhu; Suomalainen, Maarit; Pennauer, Mirjam; Yakimovich, Artur; Andriasyan, Vardan; Hemmi, Silvio; Greber, Urs F (2014). Chemical induction of unfolded protein response enhances cancer cell killing through lytic virus infection. Journal of Virology, 88(22):13086-13098.

Schlaepfer, Erika; Rochat, Mary-Aude; Duo, Li; Speck, Roberto F (2014). Triggering TLR2, -3, -4, -5, and -8 reinforces the restrictive nature of M1- and M2-polarized macrophages to HIV. Journal of Virology, 88(17):9769-9781.

Jost, Ted; Lacroix, Christophe; Braegger, Christian P; Rochat, Florence; Chassard, Christophe (2014). Vertical mother-neonate transfer of maternal gut bacteria via breastfeeding. Environmental Microbiology, 16(9):2891-2904.

Antsiferova, Olga; Müller, Anne; Rämer, Patrick C; Chijioke, Obinna; Chatterjee, Bithi; Raykova, Ana; Planas, Raquel; Sospedra, Mireia; Shumilov, Anatoliy; Tsai, Ming-Han; Delecluse, Henri-Jacques; Münz, Christian (2014). Adoptive transfer of EBV specific CD8+ T cell clones can transiently control EBV infection in humanized mice. PLoS Pathogens, 10(8):e1004333.

Burach, F; Pospischil, A; Hanger, J; Loader, J; Pillonel, T; Greub, G; Borel, N (2014). Chlamydiaceae and Chlamydia-like organisms in the koala (Phascolarctos cinereus)-Organ distribution and histopathological findings. Veterinary Microbiology, 172(1-2):230-240.

Arpaia, Salvatore; Birch, Andrew Nicholas Edmund; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Lieve, Herman; Hoen-Sorteberg, Hilde-Gunn; Huw Jones, Huw; Kiss, József; Kleter, Gijs; Løvik, Martinus; Messéan, Messéan; Naegeli, Naegeli; Nielsen, Kaare Magne; Ovesná, Jaroslava; Perry, Joe; Rostoks, Nils (2014). Scientific Opinion on applications (EFSA-GMO-UK-2008-57 and EFSA-GMO-RX-MON15985) for the placing on the market of insect-resistant genetically modified cotton MON 15985 for food and feed uses, import and processing, and for the renewal of authorisation of existing products produced from cotton MON 15985, both under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 12(7):3770.

Borel, N; Pospischil, A; Hudson, A P; Rupp, J; Schoborg, R V (2014). The role of viable but non-infectious developmental forms in chlamydial biology. Frontiers in Cellular and Infection Microbiology:4:97.

Fazli, Mustafa; Almblad, Henrik; Rybtke, Morten Levin; Givskov, Michael; Eberl, Leo; Tolker-Nielsen, Tim (2014). Regulation of biofilm formation in Pseudomonasand Burkholderias pecies. Environmental Microbiology, 16(7):1961-1981.

Whitney, Paul G; Bär, Eva; Osorio, Fabiola; Rogers, Neil C; Schraml, Barbara U; Deddouche, Safia; LeibundGut-Landmann, Salomé; Reis e Sousa, Caetano (2014). Syk signaling in dendritic cells orchestrates innate resistance to systemic fungal infection. PLoS Pathogens, 10(7):e1004276.

EFSA Panel (2014). Scientific Opinion on the annual post-market environmental monitoring (PMEM) report from Monsanto Europe S.A. on the cultivation of genetically modified maize MON 810 in 2012. EFSA Journal, 12(6):3704.

Haas, Florian; Yamauchi, Kazuma; Murat, Monika; Bernasconi, Michele; Yamanaka, Noboru; Speck, Roberto F; Nadal, David (2014). Activation of NF-κB via Endosomal Toll-like Receptor 7 (TLR7)or TLR9 Suppresses Murine Herpes Virus 68 Reactivation. Journal of Virology, 88(17):10002-10012.

EFSA Panel (2014). Scientific Opinion on application (EFSA-GMO-BE-2011-101) for the placing on the market of herbicide-tolerant genetically modified oilseed rape MON 88302 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 12(6):3701.

Meyer Sauteur, Patrick M; Jacobs, Bart C; Spuesens, Emiel B M; Jacobs, Enno; Nadal, David; Vink, Cornelis; van Rossum, Annemarie M C (2014). Antibody responses to Mycoplasma pneumoniae: role in pathogenesis and diagnosis of encephalitis? PLoS Pathogens, 10(6):e1003983.

Abel zur Wiesch, Pia; Kouyos, Roger; Abel, Sören; Viechtbauer, Wolfgang; Bonhoeffer, Sebastian (2014). Cycling empirical antibiotic therapy in hospitals: Meta-analysis and models. PLoS Pathogens, 10(6):e1004225.

EFSA Panel (2014). Scientific Opinion on application (EFSA-GMO-NL-2010-77) for the placing on the market of herbicide-tolerant genetically modified cotton GHB614 × LLCotton25 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Bayer CropScience. EFSA Journal, 12(5):3680.

EFSA Panel (2014). Scientific Opinion on application (EFSA-GMO-UK-2009-76) for the placing on the market of soybean MON 87769 genetically modified to contain stearidonic acid, for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 12(5):3644.

Wyrzucki, A; Dreyfus, C; Kohler, I; Steck, M; Wilson, I A; Hangartner, L (2014). Alternative Recognition of the Conserved Stem Epitope in Influenza A Virus Hemagglutinin by a VH3-30-Encoded Heterosubtypic Antibody. Journal of Virology, 88(12):7083-7092.

Schneider, Christoph; Nobs, Samuel P; Heer, Alex K; Kurrer, Michael; Klinke, Glynis; van Rooijen, Nico; Vogel, Johannes; Kopf, Manfred (2014). Alveolar macrophages are essential for protection from respiratory failure and associated morbidity following influenza virus infection. PLoS Pathogens, 10(4):e1004053.

Jost, Ted; Lacroix, Christophe; Braegger, Christian; Chassard, Christophe (2014). Stability of the maternal gut microbiota during late pregnancy and early lactation. Current Microbiology, 68(4):419-427.

Arpaia, Salvatore; et al (2014). Statement complementing the EFSA opinion on application EFSA GMO UK 2007 41 (cotton MON 88913 for food and feed uses, import and processing) taking into consideration updated bioinformatic analyses. EFSA Journal, 12(3):3591.

Münz, Christian (2014). Influenza A virus lures autophagic protein LC3 to budding sites. Cell Host & Microbe, 15(2):130-131.

Sollberger, Gabriel; Strittmatter, Gerhard E; Garstkiewicz, Martha; Sand, Jennifer; Beer, Hans-Dietmar (2014). Caspase-1: The inflammasome and beyond. Innate immunity, 20(2):115-125.

Arpaia, Salvatore; Birch, Andrew Nicholas Edmund; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, József; Kleter, Gijs; Løvik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesná, Jaroslava; Perry, Joe; Rostoks, Nils (2014). Scientific Opinion on application (EFSA-GMO-NL-2009-64) for the placing on the market of herbicide-tolerant genetically modified soybean BPS-CV127-9 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from BASF Plant Science. EFSA Journal, 12(1):3505.

Kost, Thomas; Stopnisek, Nejc; Agnoli, Kirsty; Eberl, Leo; Weisskopf, Laure (2014). Oxalotrophy, a widespread trait of plant-associated Burkholderia species, is involved in successful root colonization of lupin and maize by Burkholderia phytofirmans. Frontiers in Microbiology:4:421.

Mathew, Anugraha; Eberl, Leo; Carlier, Aurelien L (2014). A novel siderophore-independent strategy of iron uptake in the genus Burkholderia. Molecular Microbiology, 91(4):805-820.

Haas, Florian; Yamauchi, Kazuma; Murat, Monika; Bernasconi, Michele; Yamanaka, Noboru; Speck, Roberto F; Nadal, David (2014). Activation of NF-kappa B via endosomal toll-like receptor 7 (TLR7) or TLR9 suppresses murine herpesvirus 68 reactivation. Journal of Virology, 88(17):10002-10012.

Shabarova, Tanja; Villiger, Jörg; Morenkov, Oleg; Niggemann, Jutta; Dittmar, Thorsten; Pernthaler, Jakob (2014). Bacterial community structure and dissolved organic matter in repeatedly flooded subsurface karst water pools. FEMS Microbiology Ecology, 89(1):111-126.

Eckert, Ester M; Pernthaler, Jakob (2014). Bacterial epibionts of Daphnia: A potential route for the transfer of dissolved organic carbon in freshwater food webs. The ISME journal, 8(9):1808-1819.

Jurankova, J; Basso, W; Neumayerova, H; Balaz, V; Janova, E; Sidler, X; Deplazes, P; Koudela, B (2014). Brain is the predilection site of Toxoplasma gondii in experimentally inoculated pigs as revealed by magnetic capture and real-time PCR. Food Microbiology, 38:167-170.

Humphrey, S; Chaloner, G; Kemmett, K; Davidson, N; Williams, N; Kipar, A; Humphrey, T; Wigley, P (2014). Campylobacter jejuni is not merely a commensal in commercial broiler chickens and affects bird welfare. mBio, 5(4):e01364-14.

Schnell, Barbara; Staubli, Titu; Harris, Nicola L; Rogler, Gerhard; Kopf, Manfred; Loessner, Martin J; Schuppler, Markus (2014). Cell-wall deficient L. monocytogenes L-forms feature abrogated pathogenicity. Frontiers in Cellular and Infection Microbiology:4:60.

Abgottspon, Helga; Stephan, Roger; Bagutti, Claudia; Brodmann, Peter; Hächler, Herbert; Zurfluh, Kati (2014). Characteristics of extended-spectrum cephalosporin resistant Escherichia coli isolated from Swiss and imported poultry meat. Journal of Food Protection, 77:112-115.

Althaus, D; Lehner, A; Brisse, S; Maury, M; Tasara, T; Stephan, R (2014). Characterization of Listeria monocytogenes strains isolated during 2011-2013 from human infections in Switzerland. Foodborne Pathogens and Disease, 11:753-758.

Althaus, Denise Andrea. Characterization of Listeria monocytogenes strains isolated during 2011-2013 from human infections in Switzerland. 2014, University of Zurich, Vetsuisse Faculty.

Merz, Axel; Pflüger, Valentin; Johler, Sophia (2014). Coagulase-negative staphylcococci lead to false-positive results on chromID S. aureus and chromID MRSA agar. Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 65:133-164.

Arguedas-Villa, C; Kovacevic, J; Allen, K; Stephan, R; Tasara, T (2014). Cold growth behavior and genetic comparison of Canadian and Swiss Listeria monocytogenes strains associated with the food supply chain and human listeriosis cases. Food Microbiology, 40:81-87.

Ross-Gillespie, Adin; Kümmerli, Rolf (2014). Collective decision-making in microbes. Frontiers in Microbiology:5:54.

Münz, Christian (2014). Dendritic cells during Epstein Barr virus infection. Frontiers in Microbiology:5:308.

Glatz, Martin; Müllegger, Robert R; Maurer, Florian; Fingerle, Volker; Achermann, Yvonne; Wilske, Bettina; Bloemberg, Guido V (2014). Detection of Candidatus Neoehrlichia mikurensis, Borrelia burgdorferi sensu lato genospecies and Anaplasma phagocytophilum in a tick population from Austria. Ticks and Tick-borne Diseases, 5(2):139-144.

Desirò, Alessandro; Salvioli, Alessandra; Ngonkeu, Eddy L; Mondo, Stephen J; Epis, Sara; Faccio, Antonella; Kaech, Andres; Pawlowska, Teresa E; Bonfante, Paola (2014). Detection of a novel intracellular microbiome hosted in arbuscular mycorrhizal fungi. The ISME journal, 8(2):257-270.

Abdel-Mohsen, Mohamed; Deng, Xutao; Liegler, Teri; Guatelli, John C; Salama, Mohamed S; Ghanem, Hussam El-Din A; Rauch, Andri; Ledergerber, Bruno; Deeks, Steven G; Günthard, Huldrych F; Wong, Joseph K; Pillai, Satish K (2014). Effects of alpha interferon treatment on intrinsic anti-HIV-1 immunity in vivo. Journal of Virology, 88(1):763-767.

Peng, Silvio; Stephan, Roger; Hummerjohann, Jörg; Tasara, Taurai (2014). Evaluation of three reference genes of Escherichia coli for mRNA expression level normalization in view of salt and organic acid stress exposure in food. FEMS Microbiology Letters, 355:78-82.

Shah, Nikunj; Hülsmeier, Andreas J; Hochhold, Nina; Neidhart, Michel; Gay, Steffen; Hennet, Thierry (2014). Exposure to Mimivirus collagen promotes arthritis. Journal of Virology, 88(2):838-845.

Zbinden, Andrea; Aras, Fatma; Zbinden, Reinhard; Mouttet, Forouhar; Schmidlin, Patrick R; Bloemberg, Guido V; Bostanci, Nagihan (2014). Frequent detection of Streptococcus tigurinus in the human oral microbial flora by a specific 16S rRNA gene real-time TaqMan PCR. BMC Microbiology, 14:231.

Meier, Roger; Franceschini, Andrea; Horvath, Peter; Tetard, Marilou; Mancini, Roberta; von Mering, Christian; Helenius, Ari; Lozach, Pierre-Yves (2014). Genome-Wide Small Interfering RNA Screens Reveal VAMP3 as a Novel Host Factor Required for Uukuniemi Virus Late Penetration. Journal of Virology, 88(15):8565-8578.

Stopnisek, Nejc; Bodenhausen, Natacha; Frey, Beat; Fierer, Noah; Eberl, Leo; Weisskopf, Laure (2014). Genus-wide acid tolerance accounts for the biogeographical distribution of soil Burkholderia populations. Environmental Microbiology, 16(6):1503-1512.

Simon, Sylvia; Wagner, Maria A; Rothmeier, Eva; Müller-Taubenberger, Annette; Hilbi, Hubert (2014). Icm/Dot-dependent inhibition of phagocyte migration by Legionella is antagonized by a translocated Ran GTPase activator. Cellular Microbiology, 16(7):977-992.

Duscha, Stefan; Boukari, Heithem; Shcherbakov, Dimitri; Salian, Sumantha; Silva, Sandrina; Kendall, Ann; Kato, Takayuki; Akbergenov, Rashid; Perez-Fernandez, Deborah; Bernet, Bruno; Vaddi, Swapna; Thommes, Pia; Schacht, Jochen; Crich, David; Vasella, Andrea; Böttger, Erik C (2014). Identification and evaluation of improved 4'-O-(alkyl) 4,5-disubstituted 2-deoxystreptamines as next-generation aminoglycoside antibiotics. mBio, 5(5):e01827-e01814.

do Cabo Fernandes, Claudia; Rechenberg, Dan-Krister; Zehnder, Matthias; Belibasakis, Georgios N (2014). Identification of Synergistetes in endodontic infections. Microbial Pathogenesis, 73:1-6.

Manske, Christian; Hilbi, Hubert (2014). Metabolism of the vacuolar pathogen Legionella and implications for virulence. Frontiers in Cellular and Infection Microbiology:4:125.

Dirren, Sebastian; Salcher, Michaela M; Blom, J F; Schweikert, M; Posch, T (2014). Ménage-à-trois: The amoeba Nuclearia sp. from Lake Zurich with its ecto- and endosymbiotic bacteria. Protist, 165(5):745-758.

Morger, Jennifer; Banjok, Jaroslav; Boyce, Kellyanne; Craig, Philip S; Rogan, Michel T; Lun, Zhao-Rong; Hide, Geoff; Tschirren, Barbara (2014). Naturally occurring Toll-like receptor 11 (TLR11) and Toll-like receptor 12 (TLR12) polymorphisms are not associated with Toxoplasma gondii infection in wild wood mice. Infection, Genetics and Evolution, 26:180-184.

Hornok, Sándor; Meli, Marina L; Gönczi, Enikő; Halász, Edina; Takács, Nóra; Farkas, Róbert; Hofmann-Lehmann, Regina (2014). Occurrence of ticks and prevalence of Anaplasma phagocytophilum and Borrelia burgdorferi s.l. in three types of urban biotopes: Forests, parks and cemeteries. Ticks and Tick-borne Diseases, 5(6):785-789.

Schell, Ursula; Kessler, Aline; Hilbi, Hubert (2014). Phosphorylation signalling through the Legionella quorum sensing histidine kinases LqsS and LqsT converges on the response regulator LqsR. Molecular Microbiology, 92(5):1039-1055.

Schoborg, Robert V; Borel, Nicole (2014). Porcine epidemic diarrhea virus (PEDV) co-infection induced chlamydial persistence/stress does not require viral replication. Frontiers in Cellular and Infection Microbiology:4:20.

Belibasakis, Georgios N; Thurnheer, Thomas; Bostanci, Nagihan (2014). Porphyromonas gingivalis: A heartful oral pathogen? Virulence, 5(4):575-580.

Müller, Andreas; Hächler, Herbert; Stephan, Roger; Lehner, Angelika (2014). Presence of AmpC beta-lactamases, CSA-1, CSA-2, CMA-1, and CMA-2 conferring an unusual resistance phenotype in Cronobacter sakazakii and Cronobacter malonaticus. Microbial Drug Resistance, 20:275-280.

Sarno, Eleonora; Costanzo, N; Quaranta, V; Luigi Santoro, A M; Stephan, Roger (2014). Prevalence of IgG against hepatitis E virus, Salmonella spp., and Toxoplasma gondii in meat juice samples from wild boars hunted in Southern Italy (Short communication). Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 65:141-144.

Pohl, M O; Edinger, T O; Stertz, S (2014). Prolidase is required for early trafficking events during influenza a virus entry. Journal of Virology, 88(19):11271-11283.

Stephan, Roger; Grim, Ch; Gopinath, G; Mammel, M; Sathyamoorthy, V; Trach, L; Chase, H; Fanning, S; Tall, B (2014). Re-examination of the taxonomic status of Enterobacter helveticus, Enterobacter pulveris and Enterobacter turicensis as members of the genus Cronobacter and their reclassification in the genera Franconibacter gen. nov. and Siccibacter gen. nov. as Franconibacter helveticus comb. nov., Franconibacter pulveris comb. nov. and Siccibacter turicensis comb. nov., respectively. International Journal of Systematic and Evolutionary Microbiology, 64:3402-3410.

Pedersen, K; Sørensen, G; Szabo, I; Hächler, H; Le Hello, S (2014). Repeated isolation of Salmonella enterica Goverdhan, a very rare serovar, from Danish poultry surveillance samples. Veterinary Microbiology, 174:596-599.

Zurfluh, Katrin; Jakobi, Gianna; Stephan, Roger; Hächler, Herbert; Nüesch-Inderbinen, Magdalena (2014). Replicon typing of plasmids carrying blaCTX-M-1 in Enterobacteriaceae of animal, environmental and human origin. Frontiers in Microbiology, 5:555.

Hetzel, U; Sironen, T; Laurinmäki, P; Liljeroos, L; Patjas, A; Henttonen, H; Vaheri, A; Artelt, A; Kipar, A; Butcher, S J; Vapalahti, O; Hepojoki, J (2014). Reply to "Updated phylogenetic analysis of arenaviruses detected in boid snakes". Journal of Virology, 88(2):1401.

Hartmann, Martin; Niklaus, Pascal A; Zimmermann, Stephan; Schmutz, Stefan; Kremer, Johann; Abarenkov, Kessy; Lüscher, Peter; Widmer, Franco; Frey, Beat (2014). Resistance and resilience of the forest soil microbiome to logging-associated compaction. The ISME journal, 8(1):226-244.

Maestrini, Bernardo; Herrmann, Anke M; Nannipieri, Paolo; Schmidt, Michael W I; Abiven, Samuel (2014). Ryegrass-derived pyrogenic organic matter changes organic carbon and nitrogen mineralization in a temperate forest soil. Soil Biology and Biochemistry, 69:291-301.

Cummings, Kevin J; Rodriguez-Rivera, Lorraine D; Mitchell, Katharyn J; Hoelzer, Karin; Wiedmann, Martin; McDonough, Patrick L; Altier, Craig; Warnick, Lorin D; Perkins, Gillian A (2014). Salmonella enterica serovar Oranienburg outbreak in a veterinary medical teaching hospital with evidence of nosocomial and on-farm transmission. Vector Borne and Zoonotic Diseases, 14(7):496-502.

Neuenschwander, Stefan M; Pernthaler, Jakob; Posch, Thomas; Salcher, Michaela M (2014). Seasonal growth potential of rare lake water bacteria suggest their disproportional contribution to carbon fluxes. Environmental Microbiology, 17(3):781-795.

Braun, Ueli; Reichle, S F; Reichert, C; Hässig, Michael; Stalder, H P; Bachofen, Claudia; Peterhans, E (2014). Sheep persistently infected with Border disease readily transmit virus to calves seronegative to BVD virus. Veterinary Microbiology, 168(1):98-104.

Martin, R; Sospedra, M (2014). Sphingosine-1 phosphate and central nervous system. In: Oldstone, M B A; Rosen, H. Sphingosine-1-Phosphate Signaling in Immunology and Infectious Diseases. Springer: Springer, 149-170.

Bender, S Franz; Plantenga, Faline; Neftel, Albrecht; Jocher, Markus; Oberholzer, Hans-Rudolf; Köhl, Luise; Giles, Madeline; Daniell, Tim J; van der Heijden, Marcel G A (2014). Symbiotic relationships between soil fungi and plants reduce N2O emissions from soil. The ISME journal, 8(6):1336-1345.

Andreoni, Federica; Ogawa, Taiji; Ogawa, Mariko; Madon, Jerzy; Uchiyama, Satoshi; Schuepbach, Reto A; Zinkernagel, Annelies S (2014). The IL-8 protease SpyCEP is detrimental for Group A Streptococcus host-cells interaction and biofilm formation. Frontiers in Microbiology:5:339.

Dolinsky, Stephanie; Haneburger, Ina; Cichy, Adam; Hannemann, Mandy; Itzen, Aymelt; Hilbi, Hubert (2014). The Legionella longbeachae Icm/Dot substrate SidC selectively binds phosphatidylinositol 4-phosphate with nanomolar affinity and promotes pathogen vacuole-endoplasmic reticulum interactions. Infection and Immunity, 82(10):4021-4033.

Dudler, Robert (2014). The role of bacterial phytotoxins in inhibiting the eukaryotic proteasome. Trends in Microbiology, 22(1):28-35.

Sorce, Silvia; Nuvolone, Mario; Keller, Annika; Falsig, Jeppe; Varol, Ahmet; Schwarz, Petra; Bieri, Monika; Budka, Herbert; Aguzzi, Adriano (2014). The role of the NADPH oxidase NOX2 in prion pathogenesis. PLoS Pathogens, 10(12):e1004531.

Krause, Sascha; Le Roux, Xavier; Niklaus, Pascal A; van Bodegom, Peter M; Lennon, Jay T; Bertilsson, Stefan; Grossart, Hans-Peter; Philippot, Laurent; Bodelier, Paul L E (2014). Trait-based approaches for understanding microbial biodiversity and ecosystem functioning. Frontiers in Microbiology:5:251.

Peng, Silvio; Stephan, Roger; Hummerjohann, Jörg; Tasara, Taurai (2014). Transcriptional analysis of different stress response genes in Escherichia coli strains subjected to sodium chloride and lactic acid stress. FEMS Microbiology Letters, 361(2):131-137.

Belibasakis, G N; Bao, K; Bostanci, N (2014). Transcriptional profiling of human gingival fibroblasts in response to multi-species in vitro subgingival biofilms. Molecular Oral Microbiology, 29(4):174-183.

Seidl, Kati; Leimer, Nadja; Palheiros Marques, Miguel; Furrer, Alexandra; Senn, Gabriela; Holzmann-Bürgel, Anne; Matt, Ulrich; Zinkernagel, Annelies S (2014). USA300 methicillin-resistant Staphylococcus aureus in Zurich, Switzerland between 2001 and 2013. International Journal of Medical Microbiology : IJMM, 304(8):1118-1122.

Sihto, Henna-Maria; Tasara, Taurai; Stephan, Roger; Johler, Sophia (2014). Validation of reference genes for normalization of qPCR mRNA expression levels in Staphylococcus aureus exposed to osmotic and lactic acid stress conditions encountered during food production and preservation. FEMS Microbiology Letters, 356(1):134-140.

Hornok, Sándor; Földvári, Gábor; Rigó, Krisztina; Meli, Marina L; Tóth, Mária; Molnár, Viktor; Gönczi, Enikő; Farkas, Róbert; Hofmann-Lehmann, Regina (2014). Vector-borne agents detected in fleas of the northern white-breasted hedgehog. Vector Borne and Zoonotic Diseases, 14(1):74-76.

Zurfluh, Katrin; Wang, Juan; Klumpp, Jochen; Nüesch-Inderbinen, Magdalena; Fanning, Séamus; Stephan, Roger (2014). Vertical transmission of highly similar blaCTX-M-1-harbouring IncI1 plasmids in Escherichia coli with different MLST types in the poultry production pyramid. Frontiers in Microbiology, 5:519.

Baumgartner, A; Niederhauser, I; Johler, S (2014). Virulence and resistance gene profiles of Staphylococcus aureus strains isolated from ready-to-eat foods. Journal of Food Protection, 77:1232-1236.

Wongfun, Nuttakan; Plötze, Michael; Furrer, Gerhard; Brandl, Helmut (2014). Weathering of granite from the Damma glacier area: the contribution of cyanogenic bacteria. Geomicrobiology Journal, 31(2):93-100.

Alonso-Sáez, Laura; Zeder, Michael; Harding, Tommy; Pernthaler, Jakob; Lovejoy, Connie; Bertilsson, Stefan; Pedrós-Alió, Carlos (2014). Winter bloom of a rare betaproteobacterium in the Arctic Ocean. Frontiers in Microbiology:5:425.

2013

Gladiator, André; LeibundGut-Landmann, Salomé (2013). Innate lymphoid cells: new players in IL-17-mediated antifungal immunity. PLoS Pathogens, 9(12):e1003763.

Wang, I-Hsuan; Suomalainen, Maarit; Andriasyan, Vardan; Kilcher, Samuel; Mercer, Jason; Neef, Anne; Luedtke, Nathan W; Greber, Urs F (2013). Tracking viral genomes in host cells at single-molecule resolution. Cell Host & Microbe, 14(4):468-480.

Suomalainen, Maarit; Luisoni, Stefania; Boucke, Karin; Bianchi, Sarah; Engel, Daniel A; Greber, Urs F (2013). A direct and versatile assay measuring membrane penetration of adenovirus in single cells. Journal of Virology, (01833):13.

Hauber, I; Hofmann-Sieber, H; Chemnitz, J; Dubrau, D; Chusainow, J; Stucka, R; Hartjen, P; Schambach, A; Ziegler, P; Hackmann, K; Schröck, E; Schumacher, U; Lindner, C; Grundhoff, A; Baum, C; Manz, M G; Buchholz, F; Hauber, J (2013). Highly significant antiviral activity of HIV-1 LTR-specific tre-recombinase in humanized mice. PLoS Pathogens, 9(9):e1003587.

Lohrmann, F; Dijkman, R; Stertz, S; Thiel, V; Haller, O; Staeheli, P; Kochs, G (2013). Emergence of a C-terminal seve 1 n amino acid elongation of NS1 around 1950 2 conferred a minor growth advantage to former seasonal influenza A viruses. Journal of Virology, 87(20):11300-11303.

Vale-Silva, Luís; Ischer, Françoise; LeibundGut-Landmann, Salomé; Sanglard, Dominique (2013). Gain-of-function mutations inPDR1, a regulator of antifungal drug resistance in Candida glabrata, control adherence to host cells. Infection and Immunity, 81(5):1709-1720.

Vonaesch, Pascale; Cardini, Steven; Sellin, Mikael E; Goud, Bruno; Hardt, Wolf-Dietrich; Schauer, Kristine (2013). Quantitative insights into actin rearrangements and bacterial target site selection fromSalmonella Typhimurium infection of micropatterned cells. Cellular Microbiology, 15(11):1851-1865.

Zeitz, Johanna O; Kreuzer, Michael; Soliva, Carla R (2013). In vitro methane formation and carbohydrate fermentation by rumen microbes as influenced by selected rumen ciliate species. European Journal of Protistology, 49(3):389-399.

Alamares-Sapuay, J G; Martinez-Gil, L; Stertz, S; Miller, M S; Shaw, M L; Palese, P (2013). Serum- and glucocorticoid-regulated kinase 1 is required for nuclear export of the ribonucleoprotein of influenza A virus. Journal of Virology, 87(10):6020-6026.

Hoot, Sam; McGuire, Andrew T; Cohen, Kristen W; Strong, Roland K; Hangartner, Lars; Klein, Florian; Diskin, Ron; Scheid, Johannes F; Sather, D Noah; Burton, Dennis R; Stamatatos, Leonidas (2013). Recombinant HIV Envelope Proteins Fail to Engage Germline Versions of Anti-CD4bs bNAbs. PLoS Pathogens, 9(1):e003106.

Mally, Manuela; Fontana, Carolina; LeibundGut-Landmann, Salomé; Laacisse, Lamia; Fan, Yao-Yun; Widmalm, Göran; Aebi, Markus (2013). Glycoengineering of host mimicking type-2 LacNAc polymers and Lewis X antigens on bacterial cell surfaces. Molecular Microbiology, 87(1):112-131.

Mohammadi, Pejman; Desfarges, Sébastien; Bartha, István; Joos, Beda; Zangger, Nadine; Muñoz, Miguel; Günthard, Huldrych F; Beerenwinkel, Niko; Telenti, Amalio; Ciuffi, Angela (2013). 24 hours in the life of HIV-1 in a T cell line. PLoS Pathogens, 9(1):e1003161.

de Melo Oliveira, Maria G; Abels, Susanne; Zbinden, Reinhard; Bloemberg, Guido V; Zbinden, Andrea (2013). Accurate identification of fastidious Gram-negative rods: integration of both conventional phenotypic methods and 16S rRNA gene analysis. BMC Microbiology, 13:162.

Wolfrum, Nina; Greber, Urs F (2013). Adenovirus Signalling in Entry. Cellular Microbiology, 15(1):53-62.

Spycher, Cornelia; Herman, Emily K; Morf, Laura; Qi, Weihong; Rehrauer, Hubert; Aquino Fournier, Catharine; Dacks, Joel B; Hehl, Adrian B (2013). An ER-directed transcriptional response to unfolded protein stress in the absence of conserved sensor-transducer proteins in Giardia lamblia. Molecular Microbiology, 88(4):754-771.

Gobeli, S; Thomann, A; Wyss, F; Kuehni-Boghenbor, K; Brodard, I; Perreten, V (2013). Arsenicicoccus dermatophilus sp. nov., a hypha-forming bacterium isolated from the skin of greater flamingos (Phoenicopterus roseus) with pododermatitis. International Journal of Systematic and Evolutionary Microbiology, 63:4046-4051.

Nüesch-Inderbinen, Magdalena; Hofer, Eveline; Hächler, Herbert; Beutin, L; Stephan, Roger (2013). Characteristics of enteroaggregative Escherichia coli isolated from healthy carriers and from patients with diarrhea. Journal of Medical Microbiology, 62:1828-1834.

Gallati, Christine; Stephan, Roger; Hächler, Herbert; Malorny, Burkchard; Schroeter, Andreas; Nüesch-Inderbinen, Magdalena (2013). Characterization of Salmonella enterica serovar 4,[5],12:i:- clones isolated from human and other sources in Switzerland between 2007 and 2011. Foodborne Pathogens and Disease, 10(6):549-554.

Schärer, K; Stephan, R; Tasara, T (2013). Cold shock proteins contribute to the regulation of listeriolysin o production in listeria monocytogenes. Foodborne Pathogens and Disease, 10:1023-1029.

Schärer, K. Cold shock proteins contribute to the regulation of listeriolysin o production in listeria monocytogenes. 2013, University of Zurich, Vetsuisse Faculty.

Margot, H; Stephan, R; O'Mahony, E; Iversen, C (2013). Comparison of rapid cultural methods for the detection of Salmonella species. International Journal of Food Microbiology, 163(2-3):47-50.

Lange, Christian E; Tobler, Kurt; Schraner, Elisabeth M; Vetsch, Elisabeth; Fischer, Nina M; Ackermann, Mathias; Favrot, Claude (2013). Complete canine papillomavirus life cycle in pigmented lesions. Veterinary Microbiology, 162(2-4):388-395.

Mann, Axel; Friedrich, Nikolas; Krarup, Anders; Weber, Jacqueline; Stiegeler, Emanuel; Dreier, Birgit; Pugach, Pavel; Robbiani, Melissa; Riedel, Tina; Moehle, Kerstin; Robinson, John A; Rusert, Peter; Plückthun, Andreas; Trkola, Alexandra (2013). Conformation-dependent recognition of HIV gp120 by designed ankyrin repeat proteins provides access to novel HIV entry inhibitors. Journal of Virology, 87(10):5868-5881.

Nüesch-Inderbinen, Magdalena; Abgottspon, Helga; Zurfluh, Katrin; Nüesch, Hans-Jakob; Stephan, Roger; Hächler, Herbert (2013). Cross-sectional study on fecal carriage of Enterobacteriaceae with resistance to extended-spectrum cephalosporins in primary care patients. Microbial Drug Resistance, 19(5):362-369.

Vratskikh, Oksana; Stiasny, Karin; Zlatkovic, Jürgen; Tsouchnikas, Georgios; Jarmer, Johanna; Karrer, Urs; Roggendorf, Michael; Roggendorf, Hedwig; Allwinn, Regina; Heinz, Franz X (2013). Dissection of antibody specificities induced by yellow fever vaccination. PLoS Pathogens, 9(6):e1003458.

Choudhary, P K; Duret, A; Rohrbach-Brandt, E; Holliger, C; Sigel, Roland K O; Maillard, J (2013). Diversity of cobalamin riboswitches in the corrinoid-producing organohalide respirer Desulfitobacterium hafniense. Journal of Bacteriology, 195(22):5186-5195.

Belibasakis, Georgios N; Guggenheim, Bernhard; Bostanci, Nagihan (2013). Down-regulation of NLRP3 inflammasome in gingival fibroblasts by subgingival biofilms: Involvement of Porphyromonas gingivalis. Innate Immunity, 19(1):3-9.

Hombach, Michael; Somoskövi, Akos; Hömke, Rico; Ritter, Claudia; Böttger, Erik C (2013). Drug susceptibility distributions in slowly growing non-tuberculous mycobacteria using MGIT 960 TB eXiST. International Journal of Medical Microbiology : IJMM, 303(5):270-276.

Huber, H; Zweifel, C; Wittenbrink, M M; Stephan, R (2013). ESBL-producing uropathogenic Escherichia coli isolated from dogs and cats in Switzerland. Veterinary Microbiology, 162(2-4):992-996.

Alonso, Cecilia; Piccini, Claudia; Unrein, Fernando; Bertoglio, Florencia; Conde, Daniel; Pernthaler, Jakob (2013). Environmental dynamics as a structuring factor for microbial carbon utilization in a subtropical coastal lagoon. Frontiers in Microbiology:4:14.

Baumann, J; Novacco, M; Riond, B; Boretti, F S; Hofmann-Lehmann, R (2013). Establishment and characterization of a low-dose Mycoplasma haemofelis infection model. Veterinary Microbiology, 167(3-4):410-416.

Margot, H; Cernela, N; Iversen, C; Zweifel, C; Stephan, R (2013). Evaluation of seven different commercially available real-time PCR assays for detection of shiga toxin 1 and 2 gene subtypes. Journal of Food Protection, 76(5):871-873.

Faso, C; Konrad, C; Schraner, E M; Hehl, A B (2013). Export of cyst wall material and Golgi organelle neogenesis in Giardia lamblia depends on ER exit sites. Cellular Microbiology, 15(4):537-553.

Krengel, Annika; Meli, Marina L; Cattori, Valentino; Wachter, Bettina; Willi, Barbara; Thalwitzer, Susanne; Melzheimer, Jörg; Hofer, Heribert; Lutz, Hans; Hofmann-Lehmann, Regina (2013). First evidence of hemoplasma infection in free-ranging Namibian cheetahs (Acinonyx jubatus). Veterinary Microbiology, 162(2-4):972-976.

Drummond, N; Stephan, R; Haughton, P; Murphy, B; Fanning, S (2013). Further characterization of three Yersinia enterocolitica strains with a nalidixic acid-resistant phenotype isolated from humans with diarrhea. Foodborne Pathogens and Disease, 10(8):744-746.

Müller, A; Stephan, R; Fricker-Feer, C; Lehner, A (2013). Genetic diversity of Cronobacter sakazakii isolates collected from a Swiss infant formula production facility. Journal of Food Protection, 76(5):883-887.

Eckert, Ester M; Baumgartner, Michael; Huber, Iris M; Pernthaler, Jakob (2013). Grazing resistant freshwater bacteria profit from chitin and cell-wall-derived organic carbon. Environmental Microbiology, 15(7):2019-2030.

Arpaia, Salvatore; Birch, Nicholas; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Guidance on the environmental risk assessment of genetically modified animals. EFSA Journal, 11(5):3200.

Dudnik, Alexey; Bigler, Laurent; Dudler, Robert (2013). Heterologous expression of a Photorhabdus luminescens syrbactin-like gene cluster results in production of the potent proteasome inhibitor glidobactin A. Microbiological Research, 168(2):73-76.

Glasner, C; Sabat, A J; Chlebowicz, M A; Butaye, P; Fetsch, A; Guerra, B; Huber, H; Stephan, R; Torres, C; Vanderhaeghen, W; Voss, A; Wulff, M; van Dijl, J M (2013). High-resolution typing by MLVF unveils extensive heterogeneity of European livestock-associated methicillin-resistant Staphylococcus aureus isolates with the sequence type 398. International Journal of Medical Microbiology : IJMM, 303(3):124-127.

Kouyos, Roger; Klein, Eili; Grenfell, Bryan (2013). Hospital-community interactions foster coexistence between methicillin-resistant strains of Staphylococcus aureus. PLoS Pathogens, 9(2):e1003134.

Schwager, S; Agnoli, K; Kothe, M; Feldmann, F; Givskov, M; Carlier, A; Eberl, L (2013). Identification of Burkholderia cenocepacia Strain H111 virulence factors using nonmammalian infection hosts. Infection and Immunity, 81(1):143-153.

Schwizer, S; Tasara, T; Zurfluh, K; Stephan, R; Lehner, A (2013). Identification of genes involved in serum tolerance in the clinical strain Cronobacter sakazakii ES5. BMC Microbiology, 13:38.

Schwizer, S. Identification of genes involved in serum tolerance in the clinical strain Cronobacter sakazakii ES5. 2013, University of Zurich, Vetsuisse Faculty.

Salcher, Michaela M; Posch, Thomas; Pernthaler, Jakob (2013). In situ substrate preferences of abundant bacterioplankton populations in a prealpine freshwater lake. The ISME journal, 7(5):896-907.

Margot, H; Stephan, R; Guarino, S; Jagadeesan, B; Chilton, C; O'Mahony, E; Iversen, C (2013). Inclusivity, exclusivity and limit of detection of commercially available real-time PCR assays for the detection of Salmonella. International Journal of Food Microbiology, 165(3):221-226.

Martin, Oliver Y; Puniamoorthy, Nalini; Gubler, Andrea; Wimmer, Corinne; Bernasconi, Marco V (2013). Infections with Wolbachia, Spiroplasma, and Rickettsia in the Dolichopodidae and other Empidoidea. Infection, Genetics and Evolution, 13:317-330.

Schoster, A; Kokotovic, B; Permin, A; Pedersen, P D; Bello, F Dal; Guardabassi, L (2013). In vitro inhibition of Clostridium difficile and Clostridium perfringens by commercial probiotic strains. Anaerobe, 20:36-41.

Hetzel, U; Sironen, T; Laurinmäki, P; Liljeroos, L; Patjas, A; Henttonen, H; Vaheri, A; Artelt, A; Kipar, A; Butcher, S J; Vapalahti, O; Hepojoki, J (2013). Isolation, identification, and characterization of novel arenaviruses, the etiological agents of boid inclusion body disease. Journal of Virology, 87(20):10918-10935.

Salama, Nina R; Hartung, Mara L; Müller, Anne (2013). Life in the human stomach: persistence strategies of the bacterial pathogen Helicobacter pylori. Nature Reviews. Microbiology, 11(6):385-399.

Brülle, Juliane K; Tschumi, Andreas; Sander, Peter (2013). Lipoproteins of slow-growing Mycobacteria carry three fatty acids and are N-acylated by apolipoprotein N-acyltransferase BCG_2070c. BMC Microbiology, 13:223.

Vögtlin, Andrea; Hofmann, Martin A; Nenniger, Christoph; Renzullo, Sandra; Steinrigl, Adolf; Loitsch, Angelika; Schwermer, Heinzpeter; Kaufmann, Christian; Thür, Barbara (2013). Long-term infection of goats with bluetongue virus serotype 25. Veterinary Microbiology, 166(1-2):165-173.

Richter, Kirsten; Perriard, Guillaume; Behrendt, Rayk; Schwendener, Reto A; Sexl, Veronika; Dunn, Robert; Kamanaka, Masahito; Flavell, Richard A; Roers, Axel; Oxenius, Annette (2013). Macrophage and T cell produced IL-10 promotes viral chronicity. PLoS Pathogens, 9(11):e1003735.

Shabarova, Tanja; Widmer, Franco; Pernthaler, Jakob (2013). Mass effects meet species sorting: transformations of microbial assemblages in epiphreatic subsurface karst water pools. Environmental Microbiology, 15(9):2476-2488.

Greber, Urs F; Arnberg, Niklas; Wadell, Göran; Benkő, Mária; Kremer, Eric J (2013). Meeting Report: Adenoviruses - from pathogens to therapeutics. Cellular Microbiology, 15(1):16-23.

Ebner, R; Johler, S; Sihto, H M; Stephan, R; Zweifel, C (2013). Microarray-based characterization of Staphylococcus aureus isolates obtained from chicken carcasses. Journal of Food Protection, 76(8):1471-1474.

Maier, Lisa; Vyas, Rounak; Cordova, Carmen Dolores; Lindsay, Helen; Schmidt, Thomas Sebastian Benedikt; Brugiroux, Sandrine; Periaswamy, Balamurugan; Bauer, Rebekka; Sturm, Alexander; Schreiber, Frank; von Mering, Christian; Robinson, Mark D; Stecher, Bärbel; Hardt, Wolf-Dietrich (2013). Microbiota-derived hydrogen fuels salmonella typhimurium invasion of the gut ecosystem. Cell Host & Microbe, 14(6):641-651.

Wang, J; Stephan, R; Karczmarczyk, M; Yan, Q; Hächler, H; Fanning, S (2013). Molecular characterisation of blaESBL-harbouring conjugative plasmids identified in multi-drug resistant Escherichia coli isolated from food-producing animals and healthy humans. Frontiers in Microbiology:4:188.

Hornok, Sándor; Dénes, Béla; Meli, Marina L; Tánczos, Balázs; Fekete, Lilla; Gyuranecz, Miklós; de la Fuente, José; de Mera, Isabel G Fernández; Farkas, Róbert; Hofmann-Lehmann, Regina (2013). Non-pet dogs as sentinels and potential synanthropic reservoirs of tick-borne and zoonotic bacteria. Veterinary Microbiology, 167(3-4):700-703.

Kautz, Timo; Amelung, Wulf; Ewert, Frank; Gaiser, Thomas; Horn, Rainer; Jahn, Reinhold; Javaux, Matthieu; Kemna, Andreas; Kuzyakov, Yakov; Munch, Jean-Charles; Pätzold, Stefan; Peth, Stephan; Scherer, Heinrich W; Schloter, Michael; Schneider, Heike; Vanderborght, Jan; Vetterlein, Doris; Walter, Achim; Wiesenberg, Guido L B; Köpke, Ulrich (2013). Nutrient acquisition from arable subsoils in temperate climates: A review. Soil Biology and Biochemistry, 57:1003-1022.

Johler, S; Tichaczek-Dischinger, P; Rau, J; Sihto, H M; Lehner, A; Adam, M; Stephan, R (2013). Outbreak of Staphylococcal food poisoning due to SEA-producing Staphylococcus aureus. Foodborne Pathogens and Disease, 10(9):777-781.

Steeb, Benjamin; Claudi, Beatrice; Burton, Neil A; Tienz, Petra; Schmidt, Alexander; Farhan, Hesso; Mazé, Alain; Bumann, Dirk (2013). Parallel Exploitation of Diverse Host Nutrients Enhances Salmonella Virulence. PLoS Pathogens, 9(4):e1003301.

Francis, S M S; Tan, M E; Fung, P R; Shaw, J G; Semmler, A; Nataatmadja, M; Bowman, R V; Fong, K M; Yang, I A (2013). Peripheral compartment innate immune response to Haemophilus influenzae and Streptococcus pneumoniae in chronic obstructive pulmonary disease patients. Innate immunity, 19(4):428-437.

Kreizinger, Zsuzsa; Hornok, Sándor; Dán, Adám; Hresko, Stanislav; Makrai, László; Magyar, Tibor; Bhide, Mangesh; Erdélyi, Károly; Hofmann-Lehmann, Regina; Gyuranecz, Miklós (2013). Prevalence of francisella tularensis and francisella-like endosymbionts in the tick population of hungary and the genetic variability of francisella-like agents. Vector Borne and Zoonotic Diseases, 13(3):160-163.

Sauteur, Patrick M Meyer; Relly, Christa; Hug, Martina; Wittenbrink, Max M; Berger, Christoph (2013). Risk factors for invasive reptile-associated salmonellosis in children. Vector Borne and Zoonotic Diseases, 13(6):419-421.

Subramoni, S; Agnoli, K; Eberl, L; Lewenza, S; Sokol, P A (2013). Role of Burkholderia cenocepacia afcE and afcF genes in determining lipid-metabolism-associated phenotypes. Microbiology, 159(Pt_3):603-614.

Arpaia, Salvatore; Birch, Nicholas; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on a request from the European Commission related to the emergency measure notified by Italy on genetically modified maize MON 810 according to Article 34 of Regulation (EC) No 1829/2003. EFSA Journal, 11(9):3371.

Arpaia, Salvatore; Birch, Nicholas; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on a request from the European Commission related to the emergency measure notified by Luxembourg on genetically modified maize MON 810 according to Article 34 of Regulation (EC) No 1829/2003. EFSA Journal, 11(9):3372.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on a request from the European Commission related to the prolongation of prohibition of the placing on the market of genetically modified oilseed rape event GT73 for import, processing and feed uses in Austria. EFSA Journal, 11(4):3201.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on a request from the European Commission related to the prolongation of prohibition of the placing on the market of genetically modified oilseed rape events Ms8, Rf3 and Ms8 x Rf3 for import, processing and feed uses in Austria. EFSA Journal, 11(4):3202.

Arpaia, Salvatore; Birch, Nicholas; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on an application from Pioneer Hi-Bred International and Dow AgroSciences LLC (EFSA-GMO-NL-2005-23) for placing on the market of genetically modified maize 59122 for food and feed uses, import, processing and cultivation under Regulation (EC) No 1829/2003. EFSA Journal, 11(3):3135.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on application (EFSA-GMO-NL-2010-87) for the placing on the market of genetically modified herbicide tolerant oilseed rape GT73 for food containing or consisting of, and food produced from or containing ingredients produced from, oilseed rape GT73 (with the exception of refined oil and food additives) under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 11(2):3079.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on application (EFSA-GMO-UK-2006-34) for the placing on the market of genetically modified maize 3272 with a thermotolerant alpha-amylase, for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Syngenta Crop Protection AG. EFSA Journal, 11(6):3252.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on application (EFSA-GMO-UK-2008-53) for the placing on the market of herbicide tolerant genetically modified maize 98140 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Pioneer Overseas Corporation. EFSA Journal, 11(4):3139.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on application EFSA-GMO-NL-2007-45 for the placing on the market of herbicide-tolerant, high-oleic acid, genetically modified soybean 305423 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Pioneer. EFSA Journal, 11(12):3499.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on application EFSA-GMO-NL-2011-93 for the placing on the market of the herbicide-tolerant genetically modified soybean MON 87708 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 11(10):3355.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne (2013). Scientific Opinion on application EFSA-GMO-NL-2011-97 for the placing on the market of insect-resistant and herbicide-tolerant genetically modified cotton T304-40 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Bayer CropScience AG. EFSA Journal, 11(6):3251.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on application EFSA-GMO-UK-2007-41 for the placing on the market of herbicide-tolerant genetically modified cotton MON 88913 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 11(7):3311.

Arpaia, Salvatore; Birch, Nicholas; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on the annual Post-Market Environmental Monitoring (PMEM) report from BASF Plant Science Company GmbH on genetically modified potato EH92-527-1 in 2012. EFSA Journal, 11(10):3445.

Arpaia, Salvatore; Birch, Nicholas; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on the annual Post-Market Environmental Monitoring (PMEM) report from Monsanto Europe S.A. on the cultivation of genetically modified maize MON 810 in 2011. EFSA Journal, 11(12):3500.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific opinion on applications EFSA-GMO-RX-T25 and EFSA-GMO-NL-2007-46 for the renewal of authorisation of maize T25, and for the placing on the market of herbicide-tolerant genetically modified maize T25, both for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Bayer CropScience AG. EFSA Journal, 11(10):3356.

Margot, H; Sägesser, G; Zweifel, C; Stephan, R (2013). Short communication: Performance of a commercially available latex agglutination test kit for the identification of Salmonella. Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 64(3):75-77.

Hombach, Michael; Zbinden, Reinhard; Böttger, Erik C (2013). Standardisation of disk diffusion results for antibiotic susceptibility testing using the sirscan automated zone reader. BMC Microbiology, 13:225.

Chan, Yvonne G Y; Frankel, Matthew B; Dengler, Vanina; Schneewind, Olaf; Missiakas, Dominique (2013). Staphylococcus aureus mutants lacking the LytR-CpsA-Psr family of enzymes release cell wall teichoic acids into the extracellular medium. Journal of Bacteriology, 195(20):4650-4659.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Statement complementing the scientific opinion on application EFSA-GMO-NL-2010-78 to cover the safety of soybean MON 87705 oil for commercial frying. EFSA Journal, 11(12):3507.

Arpaia, Salvatore; Birch, Nicholas; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Statement supplementing the environmental risk assessment conclusions and risk management recommendations on genetically modified insect-resistant maize 59122 for cultivation in the light of new scientific information on non-target organisms and regionally sensitive areas. EFSA Journal, 11(11):3443.

Veloso, Tiago Rafael; Zbinden, Andrea; Andreoni, Federica; Giddey, Marlyse; Vouillamoz, Jacques; Moreillon, Philippe; Zinkernagel, Annelies Sophie; Entenza, José Manuel (2013). Streptococcus tigurinus is highly virulent in a rat model of experimental endocarditis. International Journal of Medical Microbiology : IJMM, 303(8):498-504.

Hornok, Sándor; Csörgő, Tibor; de la Fuente, José; Gyuranecz, Miklós; Privigyei, Csaba; Meli, Marina L; Kreizinger, Zsuzsa; Gönczi, Enikő; Fernández de Mera, Isabel G; Hofmann-Lehmann, Regina (2013). Synanthropic birds associated with high prevalence of tick-borne rickettsiae and with the first detection of rickettsia aeschlimannii in Hungary. Vector Borne and Zoonotic Diseases, 13(2):77-83.

Jelcic, I; Aly, L; Binder, T M C; Jelcic, I; Bofill-Mas, S; Planas, R; Demina, V; Eiermann, T H; Weber, T; Girones, R; Sospedra, M; Martin, R (2013). T cell epitope mapping of JC polyoma virus-encoded proteome reveals reduced T cell responses in HLA-DRB1*04:01+ donors. Journal of Virology, 87(6):3393-3408.

Limenitakis, Julien; Oppenheim, Rebecca D; Creek, Darren J; Foth, Bernardo J; Barrett, Michael P; Soldati-Favre, Dominique (2013). The 2-methylcitrate cycle is implicated in the detoxification of propionate in Toxoplasma gondii. Molecular Microbiology, 87(4):894-908.

Seidl, Kati; Zinkernagel, Annelies S (2013). The MTT assay is a rapid and reliable quantitative method to assess Staphylococcus aureus induced endothelial cell damage. Journal of Microbiological Methods, 92(3):307-309.

Sass, Andrea M; Schmerk, Crystal; Agnoli, Kirsty; Norville, Phillip J; Eberl, Leo; Valvano, Miguel A; Mahenthiralingam, Eshwar (2013). The unexpected discovery of a novel low-oxygen-activated locus for the anoxic persistence of Burkholderia cenocepacia. The ISME journal, 7(8):1568-1581.

Novacco, M; Riond, B; Meli, M L; Grest, P; Hofmann-Lehmann, R (2013). Tissue sequestration of 'Candidatus Mycoplasma turicensis'. Veterinary Microbiology, 167(3-4):403-409.

Suppiger, Angela; Schmid, Nadine; Aguilar, Claudio; Pessi, Gabriella; Eberl, Leo (2013). Two quorum sensing systems control biofilm formation and virulence in members of the Burkholderia cepacia complex. Virulence, 4(5):400-409.

Mercer, Jason; Greber, Urs F (2013). Virus interactions with endocytic pathways in macrophages and dendritic cells. Trends in Microbiology, 21(8):380-388.

2012

Arpaia, Salvatore; Birch, Nicholas; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion on a request from the European Commission for the assessment of the scientific elements put forward by Hungary to support the prohibition for the placing on the market of GM potato EH92-527-1 for cultivation purposes in Hungary. EFSA Journal, 10(12):3321.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gjis; Lagiou, Pagona; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Oresna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion on an application (EFSA-GMO-NL-2012-107) for the placing on the market of maize MON 810 pollen under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 10(12):3022.

Arpaia, Salvatore; Birch, Nicholas; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare M; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific opinion on the annual Post-Market Environmental Monitoring (PMEM) report from BASF Plant Science Company GmbH on the cultivation of genetically modified potato EH92-527-1 in 2011. EFSA Journal, 10(12):3015.

Arpaia, Salvatore; Birch, Nicholas; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare M; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion supplementing the conclusions of the environmental risk assessment and risk management recommendations for the cultivation of the genetically modified insect resistant maize Bt11 and MON 810. EFSA Journal, 10(12):3016.

Arpaia, Salvatore; Birch, Nicholas; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion updating the risk assessment conclusions and risk management recommendations on the genetically modified insect resistant maize Bt11. EFSA Journal, 10(12):3018.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion updating the risk assessment conclusions and risk management recommendations on the genetically modified insect resistant maize MON 810. EFSA Journal, 10(12):3017.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lagiou, Pagona; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion on an application (EFSA-GMO-NL-2009-70) for the placing on the market of genetically modified drought tolerant maize MON 87460 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 10(11):2936.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lagiou, Pagona; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion updating the risk assessment conclusions and risk management recommendations on the genetically modified insect resistant maize 1507. EFSA Journal, 10(10):2933.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lagiou, Pagona; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare M; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion supplementing the conclusions of the environmental risk assessment and risk management recommendations on the genetically modified insect resistant maize 1507 for cultivation. EFSA Journal, 10(11):2934.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lagiou, Pagona; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion on application (EFSA-GMO-NL-2010-78) for the placing on the market of herbicide-tolerant, increased oleic acid genetically modified soybean MON 87705 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 10(10):2909.

Jurgeit, Andreas; McDowell, Robert; Moese, Stefan; Meldrum, Eric; Schwendener, Reto; Greber, Urs F (2012). Niclosamide is a proton carrier and targets acidic endosomes with broad antiviral effects. PLoS Pathogens, 8(10):e1002976.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lagiou, Pagona; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific opinion addressing the safety assessment of plants developed using Zinc Finger Nuclease 3 and other site-directed Nucleases with similar function. EFSA Journal, 10(10):2943.

Noerrung, B; Collins, D; Budka, H; Hugas, M (2012). Risk assessment of biological hazards for consumer protection. EFSA Journal:1-8.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lagiou, Pagona; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion on a request from the European Commission for the assessment of the scientific elements put forward by Luxembourg to support the prohibition for the placing on the market of GM potato EH92-527-1 for cultivation purposes in Luxembourg. EFSA Journal, 10(9):2874.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gatham, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lagiou, Pagona; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion on a request from the European Commission related to the prolongation of prohibition of the placing on the market of genetically modified oilseed rape event GT73 for import, processing and feed uses in Austria. EFSA Journal, 10(9):2876.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lagiou, Pagona; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion on a request from the European Commission related to the prolongation of prohibition of the placing on the market of genetically modified oilseed rape events Ms8, Rf3 and Ms8 x Rf3 for import, processing and feed uses in Austria. EFSA Journal, 10(9):2878.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gatham, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lagiou, Pagona; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific opinion on a request from the European Commission related to the safeguard clause notified by Greece on genetically modified maize MON 810 according to Article 23 of Directive 2001/18/EC. EFSA Journal, 10(9):2877.

Schliehe, Christopher; Bitzer, Annegret; van den Broek, Maries; Groettrup, Marcus (2012). Stable antigen is most effective for eliciting CD8+ T-cell responses after DNA vaccination and infection with recombinant vaccinia virus in vivo. Journal of Virology, 86(18):9782-9793.

Schirrmeister, Bettina E; Dalquen, Daniel A; Anisimova, Maria; Bagheri, Homayoun C (2012). Gene copy number variation and its significance in cyanobacterial phylogeny. BMC Microbiology, 12:177.

Filippini, Manuela; Qi, Weihong; Jaenicke, Sebastian; Goesmann, Alexander; Smits, Theo H M; Bagheri, Homayoun C (2012). Genome sequence of the filamentous bacterium Fibrisoma limi BUZ 3T. Journal of Bacteriology, 16(194):4445.

Yakimovich, A; Gumpert, H; Burckhardt, C J; Lutschg, V A; Jurgeit, A; Sbalzarini, I F; Greber, U F (2012). Cell-free transmission of human adenovirus by passive mass transfer in cell culture simulated in a computer model. Journal of Virology, 86(18):10123-10137.

Schubert, Mario; Bleuler-Martinez, Silvia; Butschi, Alex; Wälti, Martin A; Egloff, Pascal; Stutz, Katrin; Yan, Shi; Wilson, Iain B H; Hengartner, Michael O; Aebi, Markus; Allain, Frédéric H-T; Künzler, Markus (2012). Plasticity of the β-Trefoil Protein Fold in the Recognition and Control of Invertebrate Predators and Parasites by a Fungal Defence System. PLoS Pathogens, 8(5):e1002706.

Dieckmann, Sarah M; Hoelzle, Katharina; Dieckmann, Michael P; Straube, Iris; Hofmann-Lehmann, Regina; Hoelzle, Ludwig E (2012). Occurrence of hemotrophic mycoplasmas in horses with correlation to hematological findings. Veterinary Microbiology, 160(1-2):43-52.

Günther, V; Strassen, T; Lindert, U; Dagani, P; Waldvogel, D; Georgiev, O; Schaffner, W; Bethge, T (2012). Simian virus 40 (SV40) strains with novel properties generated by replacing the viral enhancer with synthetic oligonucleotides. Journal of Virology, 86(6):3135-3142.

Ruhl, Marianne; Chhatwal, Patrick; Strathmann, Heiko; Kuntzen, Thomas; Bankwitz, Dorothea; Skibbe, Kathrin; Walker, Andreas; Heinemann, Falko M; Horn, Peter A; Allen, Todd M; Hoffmann, Daniel; Pietschmann, Thomas; Timm, Jörg (2012). Escape from a dominant HLA-B*15-restricted CD8+ T cell response against hepatitis C virus requires compensatory mutations outside the epitope. Journal of Virology, 86(2):991-1000.

Schmidt-Posthaus, H; Polkinghorne, A; Nufer, L; Schifferli, A; Zimmermann, D R; Segner, H; Steiner, P; Vaughan, L (2012). A natural freshwater origin for two chlamydial species, Candidatus Piscichlamydia salmonis and Candidatus Clavochlamydia salmonicola, causing mixed infections in wild brown trout (Salmo trutta). Environmental Microbiology, 14(8):2048-2057.

Medlock, J M; Hansford, K M; Schaffner, Francis; Versteirt, V; Hendrickx, G; Zeller, H; Van Bortel, W (2012). A review of the invasive mosquitoes in Europe: Ecology, public health risks, and control options. Vector-Borne and Zoonotic Diseases, 12(6):435-447.

Johler, S; Moser, M; Corti, S; Stephan, R (2012). A β-galactosidase negative E. coli leading to atypical colonies on RAPID’E.coli 2 agar. Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 63(6):179-181.

Vogel, R; Seyffert, M; Strasser, R; de Oliveira, A P; Dresch, C; Glauser, D L; Jolinon, N; Salvetti, A; Weitzman, M D; Fraefel, C; Ackermann, M (2012). Adeno-associated virus type 2 modulates the host DNA damage response induced by herpes simplex virus type 1 during co-infection. Journal of Virology, 86(1):143-155.

Ammann, Thomas W; Gmür, Rudolf; Thurnheer, Thomas (2012). Advancement of the 10-species subgingival Zurich Biofilm model by examining different nutritional conditions and defining the structure of the in vitro biofilms. BMC Microbiology, 12:227.

Ascher, Judith; Sartori, G; Graefe, U; Thornton, B; Ceccherini, M T; Pietramellara, G; Egli, Markus (2012). Are humus forms, mesofauna and microflora in subalpine forest soils sensitive to thermal conditions? Biology and Fertility of Soils, 48(6):709-725.

Trinh, H V; Lesage, G; Chennamparampil, V; Vollenweider, B; Burckhardt, C J; Schauer, S; Havenga, M; Greber, U F; Hemmi, S (2012). Avidity binding of human adenovirus serotypes 3 and 7 to the membrane cofactor CD46 triggers infection. Journal of Virology, 86(3):1623-1637.

Althaus, D; Hofer, E; Corti, S; Julmi, A; Stephan, R (2012). Bacteriological survey of ready-to-eat lettuce, fresh-cut fruits and sprouts collected from the Swiss market. Journal of Food Protection, 75(7):1338-1341.

Abela, Irene A; Berlinger, Livia; Schanz, Merle; Reynell, Lucy; Günthard, Huldrych F; Rusert, Peter; Trkola, Alexandra (2012). Cell-cell transmission enables HIV-1 to evade inhibition by potent CD4bs directed antibodies. PLoS Pathogens, 8(4):e1002634.

Beerenwinkel, Niko; Günthard, Huldrych F; Roth, Volker; Metzner, Karin J (2012). Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data. Frontiers in Microbiology, 3:329.

Di Palma, Stefano; Brunetti, Barbara; Doherr, Marcus G; Forster, Ursula; Hilbe, Monika; Zurbriggen, Andreas; Vandevelde, Marc; Oevermann, Anna (2012). Comparative spatiotemporal analysis of the intrathecal immune response in natural listeric rhombencephalitis of cattle and small ruminants. Comparative Immunology, Microbiology & Infectious Diseases, 35(5):429-441.

Uchiyama, Satoshi; Andreoni, Federica; Schuepbach, Reto A; Nizet, Victor; Zinkernagel, Annelies S (2012). DNase Sda1 allows invasive M1T1 Group A Streptococcus to prevent TLR9-dependent recognition. PLoS Pathogens, 8(6):e1002736.

Dengler, Vanina; Meier, Patricia Stutzmann; Heusser, Ronald; Kupferschmied, Peter; Fazekas, Judit; Friebe, Sarah; Staufer, Sibylle Burger; Majcherczyk, Paul A; Moreillon, Philippe; Berger-Bächi, Brigitte; McCallum, Nadine (2012). Deletion of hypothetical wall teichoic acid ligases in Staphylococcus aureus activates the cell wall stress response. FEMS Microbiology Letters, 333(2):109-120.

Bonke, R; Wacheck, S; Stüber, E; Stephan, R; Fredriksson-Ahomaa, M (2012). Detection of Salmonella spp. in small ruminants using immunoassy and PCR. Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 63(6):175-178.

Brengi, S; O'Brien, S B; Pichel, M; Iversen, C; Arduino, M; Binsztein, N; Jensen, B; Pagotto, F; Ribot, E; Stephan, R; Cernela, N; Cooper, K; Fanning, S (2012). Development and validation of a PulseNet standardized protocol for sub-typing isolates of Cronobacter species. Foodborne Pathogens and Disease, 9(9):861-867.

Sais, Giovanni; Wyler, Stephen; Hudolin, Tvrtko; Banzola, Irina; Mengus, Chantal; Bubendorf, Lukas; Wild, Peter J; Hirsch, Hans H; Sulser, Tullio; Spagnoli, Giulio C; Provenzano, Maurizio (2012). Differential patterns of Large Tumor Antigen specific immune responsiveness in patients with BK polyomavirus positive prostate cancer or benign prostatic hyperplasia. Journal of Virology, 86(16):8461-8471.

Bostanci, Nagihan; Belibasakis, Georgios N (2012). Doxycycline inhibits TREM-1 induction by Porphyromonas gingivalis. FEMS Immunology and Medical Microbiology, 66(1):37-44.