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  - Microbiology (1530)

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Number of items at this level: 1530.

2023

Pondeville, Emilie; Failloux, Anna-Bella; Simard, Frederic; Volf, Petr; Crisanti, Andrea; Haghighat-Khah, Roya Elaine; Busquets, Núria; Abad, Francesc Xavier; Wilson, Anthony J; Bellini, Romeo; Marsh Arnaud, Sarah; Kohl, Alain; Veronesi, Eva (2023). Infravec2 guidelines for the design and operation of containment level 2 and 3 insectaries in Europe. Pathogens and global health, 117(3):293-307.

Kendlbacher, Fabian L; Bloch, Susanne; Hager-Mair, Fiona F; Bacher, Johanna; Janesch, Bettina; Thurnheer, Thomas; Andrukhov, Oleh; Schäffer, Christina (2023). Multispecies biofilm behavior and host interaction support the association of Tannerella serpentiformis with periodontal health. Molecular Oral Microbiology, 38(2):115-133.

Kronenberg, Philipp Andreas; Reinehr, Michael; Eichenberger, Ramon M; Hasler, Sina; Laurimäe, Teivi; Weber, Achim; Deibel, Ansgar; Müllhaupt, Beat; Gottstein, Bruno; Müller, Norbert; Hemphill, Andrew; Deplazes, Peter (2023). Monoclonal antibody-based localization of major diagnostic antigens in metacestode tissue, excretory/secretory products, and extracellular vesicles of Echinococcus species. Frontiers in Cellular and Infection Microbiology, 13:1162530.

Morrissette, Naomi; Abbaali, Izra; Ramakrishnan, Chandra; Hehl, Adrian B (2023). The Tubulin Superfamily in Apicomplexan Parasites. Microorganisms, 11(3):706.

Schiedung, Marcus; Bellè, Severin-Luca; Hoeschen, Carmen; Schweizer, Steffen A; Abiven, Samuel (2023). Enhanced loss but limited mobility of pyrogenic and organic matter in continuous permafrost-affected forest soils. Soil Biology and Biochemistry, 178:108959.

Kavagutti, Vinicius S; Bulzu, Paul-Adrian; Chiriac, Cecilia M; Salcher, Michaela M; Mukherjee, Indranil; Shabarova, Tanja; Grujčić, Vesna; Mehrshad, Maliheh; Kasalický, Vojtěch; Andrei, Adrian-Stefan; Jezberová, Jitka; Seďa, Jaromir; Rychtecký, Pavel; Znachor, Petr; Šimek, Karel; Ghai, Rohit (2023). High-resolution metagenomic reconstruction of the freshwater spring bloom. Microbiome, 11(1):15.

Laganenka, Leanid; Lee, Jae-Woo; Malfertheiner, Lukas; Dieterich, Cora Lisbeth; Fuchs, Lea; Piel, Jörn; von Mering, Christian; Sourjik, Victor; Hardt, Wolf-Dietrich (2023). Chemotaxis and autoinducer-2 signalling mediate colonization and contribute to co-existence of Escherichia coli strains in the murine gut. Nature Microbiology, 8(2):204-217.

Eberl, Leo (2023). Rehabilitation of the ‘bad guys’ for biocontrol applications. Environmental Microbiology, 25(1):97-101.

2022

Muchaamba, Francis; von Ah, Ueli; Stephan, Roger; Stevens, Marc J A; Tasara, Taurai (2022). Deciphering the global roles of Cold shock proteins in Listeria monocytogenes nutrient metabolism and stress tolerance. Frontiers in Microbiology, 13:1057754.

Schnyder, Anya; Eberl, Leo; Agnoli, Kirsty (2022). Investigating the Biocontrol Potential of the Natural Microbiota of the Apple Blossom. Microorganisms, 10(12):2480.

Mullins, Ewen; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Naegeli, Hanspeter; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Camargo, Ana M; Goumperis, Tilemachos; Lewandowska, Aleksandra; Raffaello, Tommaso; Streissl, Franz (2022). Assessment of genetically modified soybean MON 87701 for renewal authorisation under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐RX‐021). EFSA Journal, 20(12):e07683.

Negrete, Flavia J; Ko, Katie; Jang, Hyein; Hoffmann, Maria; Lehner, Angelika; Stephan, Roger; Fanning, Séamus; Tall, Ben D; Gopinath, Gopal R (2022). Complete genome sequences and genomic characterization of five plasmids harbored by environmentally persistent Cronobacter sakazakii strains ST83 H322 and ST64 GK1025B obtained from powdered infant formula manufacturing facilities. Gut Pathogens, 14(1):23.

Dogga, Sunil Kumar; Lunghi, Matteo; Maco, Bohumil; Li, Jiagui; Claudi, Beatrice; Marq, Jean‐Baptiste; Chicherova, Natalia; Kockmann, Tobias; Bumann, Dirk; Hehl, Adrian B; Soldati‐Favre, Dominique; Hammoudi, Pierre‐Mehdi (2022). Importance of aspartyl protease 5 in the establishment of the intracellular niche during acute and chronic infection of Toxoplasma gondii. Molecular Microbiology, 118(6):601-622.

Meyer Sauteur, Patrick M; Chalker, Victoria J; Berger, Christoph; Nir-Paz, Ran; Beeton, Michael L; et al (2022). Mycoplasma pneumoniae beyond the COVID-19 pandemic: where is it? The Lancet Microbe, 3(12):e897.

Coenye, Tom; Spittaels, Karl-Jan; Achermann, Yvonne (2022). The role of biofilm formation in the pathogenesis and antimicrobial susceptibility of Cutibacterium acnes. Biofilm, 4:100063.

Steiner, Elisabeth; Shilling, Rebecca E; Richter, Anja M; Schmid, Nadine; Fazli, Mustafa; Kaever, Volkhard; Jenal, Urs; Tolker-Nielsen, Tim; Eberl, Leo (2022). The BDSF quorum sensing receptor RpfR regulates Bep exopolysaccharide synthesis in Burkholderia cenocepacia via interaction with the transcriptional regulator BerB. npj Biofilms and Microbiomes, 8:93.

Gruenbach, Maarja; Muller, Christina K S; Schlaepfer, Erika; Baroncini, Luca; Russenberger, Doris; Kadzioch, Nicole P; Escher, Benjamin; Schlapschy, Martin; Skerra, Arne; Bredl, Simon; Speck, Roberto F (2022). cART Restores Transient Responsiveness to IFN Type 1 in HIV-Infected Humanized Mice. Journal of Virology, 96(21):e0082722.

Mullins, Ewen; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Naegeli, Hanspeter; Nogué, Fabien; Rostoks, Nils; Serrano, Jose Juan Sánchez; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Ardizzone, Michele; Camargo, Ana Martin; de Sanctis, Giacomo; Federici, Silvia; Dumont, Antonio Fernandez; Gennaro, Andrea; Ruiz, Jose Angel Gomez; Goumperis, Tilemachos; Kagkli, Dafni Maria; Lanzoni, Anna; Lewandowska, Aleksandra; Lenzi, Paolo; Neri, Franco Maria; et al (2022). Assessment of genetically modified Maize MON 87429 for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2019‐161). EFSA Journal, 20(11):e07589.

Mullins, Ewen; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Naegeli, Hanspeter; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Camargo, Ana M; Goumperis, Tilemachos; Lenzi, Paolo; Lewandowska, Aleksandra; Raffaello, Tommaso; Streissl, Franz (2022). Assessment of genetically modified cotton 281‐24‐236 × 3006‐210‐23 for renewal authorisation under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐RX‐019). EFSA Journal, 20(11):e07587.

Mullins, Ewen; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Naegeli, Hanspeter; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Ardizzone, Michele; Martin Camargo, Ana; De Sanctis, Giacomo; Fernandez Dumont, Antonio; Gennaro, Andrea; Gómez Ruiz, Jose Ángel; Goumperis, Tilemachos; Kagkli, Dafni Maria; Neri, Franco Maria; Papadopoulou, Nikoletta; Raffaello, Tommaso; Streissl, Franz (2022). Assessment of genetically modified maize DP4114 × MON 89034 × MON 87411 × DAS‐40278‐9 and subcombinations, for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA GMO‐NL‐2020‐171). EFSA Journal, 20(11):e07619.

Mullins, Ewen; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Naegeli, Hanspeter; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Ardizzone, Michele; Camargo, Ana M; De Sanctis, Giacomo; Fernandez, Antonio; Gennaro, Andrea; Gomez Ruiz, Jose Angel; Goumperis, Tilemachos; Kagkli, Dafni Maria; Lenzi, Paolo; Neri, Franco Maria; Raffaello, Tommaso; Streissl, Franz (2022). Assessment of genetically modified maize MON 95379 for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2020‐170). EFSA Journal, 20(11):e07588.

Mullins, Ewen; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Naegeli, Hanspeter; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Fernandez, Antonio; Gennaro, Andrea; Gomez Ruiz, Jose Angel; Lenzi, Paolo; Martin Camargo, Ana; Lewandowska, Aleksandra; Piffanelli, Pietro; Raffaello, Tommaso (2022). Assessment of genetically modified oilseed rape GT73 for placing on the market of isolated seed protein for food under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐RX‐026/2). EFSA Journal, 20(11):e07590.

Walder, Florian; Schmid, Marc W; Riedo, Judith; Valzano-Held, Alain Y; Banerjee, Samiran; Büchi, Lucie; Bucheli, Thomas D; van der Heijden, Marcel G A (2022). Soil microbiome signatures are associated with pesticide residues in arable landscapes. Soil Biology and Biochemistry, 174:108830.

Biggel, Michael; Horlbog, Jule; Nüesch-Inderbinen, Magdalena; Chattaway, Marie Anne; Stephan, Roger (2022). Epidemiological links and antimicrobial resistance of clinical Salmonella enterica ST198 isolates: a nationwide microbial population genomic study in Switzerland. Microbial genomics, 8(10):mgen000877.

Jayakumar, Priyanikha; Figueiredo, Alexandre R T; Kümmerli, Rolf (2022). Evolution of Quorum Sensing in <i>Pseudomonas aeruginosa</i> Can Occur via Loss of Function and Regulon Modulation. mSystems, 7(5):e0035422.

Bulzu, Paul-Adrian; Kavagutti, Vinicius S; Andrei, Adrian-Stefan; Ghai, Rohit (2022). The Evolutionary Kaleidoscope of Rhodopsins. mSystems, 7(5):e0040522.

Frey, Beat; Rast, Basil M; Qi, Weihong; Stierli, Beat; Brunner, Ivano (2022). Long-term mercury contamination does not affect the microbial gene potential for C and N cycling in soils but enhances detoxification gene abundance. Frontiers in Microbiology, 13:1034138.

Mullins, Ewen; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Naegeli, Hanspeter; Nogué, Fabien; Rostoks, Nils; Sánchez‐Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Camargo, Ana M; Goumperis, Tilemachos; Lenzi, Paolo; Lewandowska, Aleksandra; Raffaello, Tommaso (2022). Assessment of genetically modified oilseed rape GT73 for renewal authorisation under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐RX‐026/1). EFSA Journal, 20(10):e07563.

Mullins, Ewen; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Naegeli, Hanspeter; Nogué, Fabien; Serrano, Jose Juan Sánchez; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Casacuberta, Josep; Dumont, Antonio Fernandez; Gennaro, Andrea; Lenzi, Paolo; Lewandowska, Aleksandra; Guajardo, Irene Pilar Munoz; Papadopoulou, Nikoletta; Rostoks, Nils (2022). Updated scientific opinion on plants developed through cisgenesis and intragenesis. EFSA Journal, 20(10):e07621.

Pacher, Nicola; Burtscher, Johanna; Johler, Sophia; Etter, Danai; Bender, Denisse; Fieseler, Lars; Domig, Konrad J (2022). Ropiness in Bread—A Re-Emerging Spoilage Phenomenon. Foods, 11(19):3021.

Oyewole, Oluwaseun Rume-Abiola; Latzin, Philipp; Brugger, Silvio D; Hilty, Markus (2022). Strain-level resolution and pneumococcal carriage dynamics by single-molecule real-time (SMRT) sequencing of the plyNCR marker: a longitudinal study in Swiss infants. Microbiome, 10:152.

Prodić, Ivana; Smiljanić, Katarina; Nagl, Christoph; Ballmer-Weber, Barbara; Hoffmann-Sommergruber, Karin; Veličković, Tanja Ćirković (2022). INFOGEST Digestion Assay of Raw and Roasted Hazelnuts and Its Impact on Allergens and Their IgE Binding Activity. Foods, 11(18):2914.

Purtschert-Montenegro, Gabriela; Cárcamo-Oyarce, Gerardo; Pinto-Carbó, Marta; Agnoli, Kirsty; Bailly, Aurélien; Eberl, Leo (2022). Pseudomonas putida mediates bacterial killing, biofilm invasion and biocontrol with a type IVB secretion system. Nature Microbiology, 7(10):1547-1557.

Salar-Vidal, Llanos; Aguilera-Correa, John Jairo; Brüggemann, Holger; Achermann, Yvonne; Esteban, Jaime (2022). Microbiological Characterization of Cutibacterium acnes Strains Isolated from Prosthetic Joint Infections. Antibiotics, 11(9):1260.

Ianiri, Giuseppe; Leibundgut-Landmann, Salomé; Dawson, Thomas L (2022). Malassezia: A Commensal, Pathogen, and Mutualist of Human and Animal Skin. Annual Review of Microbiology, 76(1):757-782.

Yarahmadov, Tural; Wang, Junhua; Sanchez-Taltavull, Daniel; Alvarez Rojas, Cristian A; Brodie, Tess; Büchi, Isabel; Keogh, Adrian; Gottstein, Bruno; Stroka, Deborah; Beldi, Guido (2022). Primary Infection by E. multilocularis Induces Distinct Patterns of Cross Talk between Hepatic Natural Killer T Cells and Regulatory T Cells in Mice. Infection and Immunity, 90(8):e0017422.

Annaheim, Désirée; Vogler, Barbara Renate; Sigrist, Brigitte; Vögtlin, Andrea; Hüssy, Daniela; Breitler, Christian; Hartnack, Sonja; Grund, Christian; King, Jacqueline; Wolfrum, Nina; Albini, Sarah (2022). Screening of Healthy Feral Pigeons (Columba livia domestica) in the City of Zurich Reveals Continuous Circulation of Pigeon Paramyxovirus-1 and a Serious Threat of Transmission to Domestic Poultry. Microorganisms, 10(8):1656.

Jans, Christoph; Wambui, Joseph; Stevens, Marc J A; Tasara, Taurai (2022). Comparative genomics of dairy-associated Staphylococcus aureus from selected sub-Saharan African regions reveals milk as reservoir for human-and animal-derived strains and identifies a putative animal-related clade with presumptive novel siderophore. Frontiers in Microbiology, 13:923080.

Kaczmarczyk, Lech; Schleif, Melvin; Dittrich, Lars; Williams, Rhiannan H; Koderman, Maruša; Bansal, Vikas; Rajput, Ashish; Schulte, Theresa; Jonson, Maria; Krost, Clemens; Testaquadra, Fabio J; Bonn, Stefan; Jackson, Walker S (2022). Distinct translatome changes in specific neural populations precede electroencephalographic changes in prion-infected mice. PLoS Pathogens, 18(8):e1010747.

Uribe, Manuel; Segeritz, Lisa; Schnyder, Manuela; Taubert, Anja; Hermosilla, Carlos; López-Osorio, Sara; Góngora-Orjuela, Agustín; Chaparro-Gutiérrez, Jenny J (2022). Nationwide Seroprevalence Survey of Angiostrongylus vasorum-Derived Antigens and Specific Antibodies in Dogs from Colombia. Microorganisms, 10(8):1565.

Etter, Danai; Büchel, Ramona; Patt, Tabea; Biggel, Michael; Tasara, Taurai; Cernela, Nicole; Stevens, Marc J A; Johler, Sophia (2022). Nitrite stress increases staphylococcal enterotoxin C transcription and triggers the SigB regulon. FEMS Microbiology Letters, 369(1):fnac059.

Mullins, Ewen; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Naegeli, Hanspeter; Moreno, Francisco Javier; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Ardizzone, Michele; De Sanctis, Giacomo; Dumont, Antonio Fernandez; Federici, Silvia; Gennaro, Andrea; Gomez Ruiz, Jose Angel; Goumperis, Tilemachos; Kagkli, Dafni Maria; Lanzoni, Anna; Lenzi, Paolo; Lewandowska, Aleksandra; Neri, Franco Maria; Paraskevopoulos, Konstantinos; et al (2022). Assessment of genetically modified maize MON 89034 × 1507 × MIR162 × NK603 × DAS‐40278‐9 for food and feed uses, under regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2018‐151). EFSA Journal, 20(8):e07451.

Biggel, Michael; Jessberger, Nadja; Kovac, Jasna; Johler, Sophia (2022). Recent paradigm shifts in the perception of the role of Bacillus thuringiensis in foodborne disease. Food Microbiology, 105:104025.

Hochstrasser, Ramon; Michaelis, Sarah; Brülisauer, Sabrina; Sura, Thomas; Fan, Mingzhen; Maaß, Sandra; Becher, Dörte; Hilbi, Hubert (2022). Migration of Acanthamoeba through Legionella biofilms is regulated by the bacterial Lqs-LvbR network, effector proteins and the flagellum. Environmental Microbiology, 24(8):3672-3692.

Cavallaro, Alessio; Rhoads, William J; Huwiler, Simona G; Stachler, Elyse; Hammes, Frederik (2022). Potential probiotic approaches to control Legionella in engineered aquatic ecosystems. FEMS Microbiology Ecology, 98(8):fiac071.

Jahn, Katharina; Dreifuss, David; Topolsky, Ivan; Kull, Anina; Ganesanandamoorthy, Pravin; Fernandez-Cassi, Xavier; Bänziger, Carola; Devaux, Alexander J; Stachler, Elyse; Caduff, Lea; Cariti, Federica; Corzón, Alex Tuñas; Fuhrmann, Lara; Chen, Chaoran; Jablonski, Kim Philipp; Nadeau, Sarah; Feldkamp, Mirjam; Beisel, Christian; Aquino, Catharine; Stadler, Tanja; Ort, Christoph; Kohn, Tamar; Julian, Timothy R; Beerenwinkel, Niko (2022). Early detection and surveillance of SARS-CoV-2 genomic variants in wastewater using COJAC. Nature Microbiology, 7(8):1151-1160.

Sanders, Christopher; Veronesi, Eva; Rajko-Nenow, Paulina; Mertens, Peter Paul Clement; Batten, Carrie; Gubbins, Simon; Carpenter, Simon; Darpel, Karin (2022). Field-Reassortment of Bluetongue Virus Illustrates Plasticity of Virus Associated Phenotypic Traits in the Arthropod Vector and Mammalian Host In Vivo. Journal of Virology, 96(13)::e0053122.

Jang, Hyein; Eshwar, Athmanya; Lehner, Angelika; Gangiredla, Jayanthi; Patel, Isha R; Beaubrun, Junia Jean-Gilles; Chase, Hannah R; Negrete, Flavia; Finkelstein, Samantha; Weinstein, Leah M; Ko, Katie; Addy, Nicole; Ewing, Laura; Woo, Jungha; Lee, Youyoung; Seo, Kunho; Jaradat, Ziad; Srikumar, Shabarinath; Fanning, Séamus; Stephan, Roger; Tall, Ben D; Gopinath, Gopal R (2022). Characterization of Cronobacter sakazakii Strains Originating from Plant-Origin Foods Using Comparative Genomic Analyses and Zebrafish Infectivity Studies. Microorganisms, 10(7):1396.

Onorini, Delia; Borel, Nicole; Schoborg, Robert V; Leonard, Cory Ann (2022). Neisseria gonorrhoeae Limits Chlamydia trachomatis Inclusion Development and Infectivity in a Novel In Vitro Co-Infection Model. Frontiers in Cellular and Infection Microbiology, 12:911818.

Mullins, Ewen; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Naegeli, Hanspeter; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Ardizzone, Michele; De Sanctis, Giacomo; Federici, Silvia; Fernandez Dumont, Antonio; Gennaro, Andrea; Gomez Ruiz, Jose Angel; Goumperis, Tilemachos; Lanzoni, Anna; Lenzi, Paolo; Neri, Franco Maria; Papadopoulou, Nikoletta; Raffaello, Tommaso; Streissl, Franz (2022). Assessment of genetically modified oilseed rape MON 94100 for food and feed uses, under regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2020‐169). EFSA Journal, 20(7):e07411.

Mullins, Ewen; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Nogue, Fabien; Rostoks, Nils; Sanchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Casacuberta, Josep; Zurbriggen, Matias D; Fernandez, Antonio; Gomez Ruiz, Jose Angel; Gennaro, Andrea; Papadopoulou, Nikoletta; Lanzoni, Anna; Naegeli, Hanspeter (2022). Evaluation of existing guidelines for their adequacy for the food and feed risk assessment of genetically modified plants obtained through synthetic biology. EFSA Journal, 20(7):e07410.

Scalisi, Nadia; Kuhnert, Peter; Vargas-Amado, Maria Elena; Overesch, Gudrun; Stärk, Katharina D C; Ruggli, Nicolas; Jores, Joerg (2022). Seroprevalence of Mycoplasma hyopneumoniae in sows fifteen years after implementation of a control programme for enzootic pneumonia in Switzerland. Veterinary Microbiology, 270:109455.

Gopinath, Gopal R; Jang, Hyein; Beaubrun, Junia Jean-Gilles; Gangiredla, Jayanthi; Mammel, Mark K; Müller, Andrea; Tamber, Sandeep; Patel, Isha R; Ewing, Laura; Weinstein, Leah M; Wang, Caroline Z; Finkelstein, Samantha; Negrete, Flavia; Muruvanda, Tim; Allard, Marc; Sockett, Donald C; Pagotto, Franco; Tall, Ben D; Stephan, Roger (2022). Phylogenomic Analysis of Salmonella enterica subsp. enterica Serovar Bovismorbificans from Clinical and Food Samples Using Whole Genome Wide Core Genes and kmer Binning Methods to Identify Two Distinct Polyphyletic Genome Pathotypes. Microorganisms, 10(6):1199.

Chiriac, Maria-Cecilia; Bulzu, Paul-Adrian; Andrei, Adrian-Stefan; Okazaki, Yusuke; Nakano, Shin-ichi; Haber, Markus; Kavagutti, Vinicius Silva; Layoun, Paul; Ghai, Rohit; Salcher, Michaela M (2022). Ecogenomics sheds light on diverse lifestyle strategies in freshwater CPR. Microbiome, 10(1):84.

Mullins, Ewen; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Naegeli, Hanspeter; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Ardizzone, Michele; Fernandez, Antonio; Kagkli, Dafni Maria; Lewandowska, Aleksandra; Raffaello, Tommaso; Streissl, Franz (2022). Assessment of genetically modified soybean A5547‐127 for renewal authorisation under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐RX‐020). EFSA Journal, 20(6):e07340.

Mullins, Ewen; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Naegeli, Hanspeter; Moreno, Francisco Javier; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Fernandez Dumont, Antonio; Federici, Silvia; Kagkli, Dafni Maria; Lanzoni, Anna; Papadopoulou, Nikoletta; Raffaello, Tommaso (2022). Assessment of new sequencing information for genetically modified cotton DAS‐24236‐5 × DAS‐21Ø23‐5. EFSA Journal, 20(6):e07345.

Arnold, M; Schmitt, S; Collaud, A; Rossano, A; Hübschke, Ella; Zeeh, Friederike; Nathues, Heiko; Perreten, Vincent (2022). Distribution, genetic heterogeneity, and antimicrobial susceptibility of Brachyspira pilosicoli in Swiss pig herds. Veterinary Microbiology, 269:109421.

Bächli, Patrik; Baars, Sibylle; Simmler, Anita; Zbinden, Reinhard; Schulthess, Bettina (2022). Impact of MALDI-TOF MS identification on anaerobic species and genus diversity in routine diagnostics. Anaerobe, 75:102554.

Isenring, Julia; Stevens, Marc J A; Jans, Christoph; Lacroix, Christophe; Geirnaert, Annelies (2022). Identification of Valerate as Carrying Capacity Modulator by Analyzing Lactiplantibacillus plantarum Colonization of Colonic Microbiota in vitro. Frontiers in Microbiology, 13:910609.

Kubacki, Jakub; Qi, Weihong; Fraefel, Cornel (2022). Differential Viral Genome Diversity of Healthy and RSS-Affected Broiler Flocks. Microorganisms, 10(6):1092.

Nüesch-Inderbinen, Magdalena; Haussmann, Adrian; Treier, Andrea; Zurfluh, Katrin; Biggel, Michael; Stephan, Roger (2022). Fattening Pigs Are a Reservoir of Florfenicol-Resistant Enterococci Harboring Oxazolidinone Resistance Genes. Journal of Food Protection, 85(5):740-746.

Bajer, Anna; Beck, Ana; Beck, Relja; Behnke, Jerzy M; Dwużnik-Szarek, Dorota; Eichenberger, Ramon M; Farkas, Róbert; Fuehrer, Hans-Peter; Heddergott, Mike; Jokelainen, Pikka; Leschnik, Michael; Oborina, Valentina; Paulauskas, Algimantas; Radzijevskaja, Jana; Ranka, Renate; Schnyder, Manuela; Springer, Andrea; Strube, Christina; Tolkacz, Katarzyna; Walochnik, Julia (2022). Babesiosis in Southeastern, Central and Northeastern Europe: An Emerging and Re-Emerging Tick-Borne Disease of Humans and Animals. Microorganisms, 10(5):945.

Boumasmoud, Mathilde; Dengler Haunreiter, Vanina; Schweizer, Tiziano A; Meyer, Lilly; Chakrakodi, Bhavya; Schreiber, Peter W; Seidl, Kati; Kühnert, Denise; Kouyos, Roger D; Zinkernagel, Annelies S (2022). Genomic Surveillance of Vancomycin-Resistant Enterococcus faecium Reveals Spread of a Linear Plasmid Conferring a Nutrient Utilization Advantage. mBio, 13(2):e0377121.

Čaušević, Senka; Tackmann, Janko; Sentchilo, Vladimir; von Mering, Christian; van der Meer, Jan Roelof (2022). Reproducible Propagation of Species-Rich Soil Bacterial Communities Suggests Robust Underlying Deterministic Principles of Community Formation. mSystems, 7(2):e0016022.

Muchaamba, Francis; Barmettler, Karen; Treier, Andrea; Houf, Kurt; Stephan, Roger (2022). Microbiology and Epidemiology of Escherichia albertii—An Emerging Elusive Foodborne Pathogen. Microorganisms, 10(5):875.

Sigg, Aurelia Pahnita; Mariotti, Max; Grütter, Anabel E; Lafranca, Tecla; Leitner, Lorenz; Bonkat, Gernot; Braissant, Olivier (2022). A Method to Determine the Efficacy of a Commercial Phage Preparation against Uropathogens in Urine and Artificial Urine Determined by Isothermal Microcalorimetry. Microorganisms, 10(5):845.

Etter, Danai; Ukowitz, Christina; Eicher, Corinne; Tasara, Taurai; Johler, Sophia (2022). Mild NaCl Stress Influences Staphylococcal Enterotoxin C Transcription in a Time-Dependent Manner and Reduces Protein Expression. Frontiers in Microbiology, 13:820067.

Lemberg, Christina; de San Vicente, Kontxi Martinez; Fróis-Martins, Ricardo; Altmeier, Simon; Tran, Van Du T; Mertens, Sarah; Amorim-Vaz, Sara; Rai, Laxmi Shanker; d’Enfert, Christophe; Pagni, Marco; Sanglard, Dominique; LeibundGut-Landmann, Salomé (2022). Candida albicans commensalism in the oral mucosa is favoured by limited virulence and metabolic adaptation. PLoS Pathogens, 18(4):e1010012.

Nüesch-Inderbinen, Magdalena; Hänni, Claudia; Zurfluh, Katrin; Hartnack, Sonja; Stephan, Roger (2022). Antimicrobial resistance profiles of <i>Escherichia coli</i> and prevalence of extended‐spectrum beta‐lactamase‐producing Enterobacteriaceae in calves from organic and conventional dairy farms in Switzerland. MicrobiologyOpen, 11(2):e1269.

Striednig, Bianca; Hilbi, Hubert (2022). Bacterial quorum sensing and phenotypic heterogeneity: how the collective shapes the individual. Trends in Microbiology, 30(4):379-389.

Scherrer, Simone; Peterhans, Sophie; Neupert, Christine; Rademacher, Fenja; Bartolomei, Giody; Sidler, Xaver; Stephan, Roger (2022). Development of a novel high resolution melting assay for identification and differentiation of all known 19 serovars of Actinobacillus pleuropneumoniae. MicrobiologyOpen, 11(2):752.

Paqué, Pune N; Karygianni, Lamprini; Kneubuehler, Julien; Fiscalini, Lorenzo; Wiedemeier, Daniel B; Müller, Marcel; Attin, Thomas; Thurnheer, Thomas (2022). Microbial approaches for the assessment of toothpaste efficacy against oral species: A method comparison. MicrobiologyOpen, 11(2):e1271.

Gichure, Josphat N; Kamau Njage, Patrick Murigu; Wambui, Joseph M; Dykes, Gary A; Buys, Elna M; Coorey, Ranil (2022). Systematic-review and meta-analysis on effect of decontamination interventions on prevalence and concentration of Campylobacter spp. during primary processing of broiler chickens. Food Microbiology, 102:103923.

Brewer, Tess E; Wagner, Andreas (2022). Translation stalling proline motifs are enriched in slow-growing, thermophilic, and multicellular bacteria. The ISME journal, 16(4):1065-1073.

Walker, Timothy M; Miotto, Paolo; Köser, Claudio U; Fowler, Philip W; Knaggs, Jeff; Iqbal, Zamin; Hunt, Martin; Chindelevitch, Leonid; Farhat, Maha R; Cirillo, Daniela Maria; Comas, Iñaki; Posey, James; Omar, Shaheed V; Peto, Timothy Ea; Suresh, Anita; Uplekar, Swapna; Laurent, Sacha; Colman, Rebecca E; Nathanson, Carl-Michael; Zignol, Matteo; Walker, Ann Sarah; CRyPTIC Consortium; Seq&Treat Consortium; Crook, Derrick W; Ismail, Nazir; Rodwell, Timothy C (2022). The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: A genotypic analysis. The Lancet Microbe, 3(4):e265-e273.

Wambui, Joseph; Stevens, Marc J A; Cernela, Nicole; Stephan, Roger (2022). Unraveling the Genotypic and Phenotypic Diversity of the Psychrophilic Clostridium estertheticum Complex, a Meat Spoilage Agent. Frontiers in Microbiology, 13:856810.

Zhao, Lele; Wymant, Chris; Blanquart, François; Golubchik, Tanya; Gall, Astrid; Bakker, Margreet; Bezemer, Daniela; Hall, Matthew; Ong, Swee Hoe; Albert, Jan; Bannert, Norbert; Fellay, Jacques; Grabowski, M Kate; Gunsenheimer-Bartmeyer, Barbara; Günthard, Huldrych F; Kivelä, Pia; Kouyos, Roger D; Laeyendecker, Oliver; Meyer, Laurence; Porter, Kholoud; van Sighem, Ard; van der Valk, Marc; Berkhout, Ben; Kellam, Paul; Cornelissen, Marion; Reiss, Peter; Fraser, Christophe; Ferretti, Luca (2022). Phylogenetic estimation of the viral fitness landscape of HIV-1 set-point viral load. Virus Evolution, 8(1):veac022.

Marti, Hanna; Suchland, Robert J; Rockey, Daniel D (2022). The Impact of Lateral Gene Transfer in Chlamydia. Frontiers in Cellular and Infection Microbiology, 12:861899.

Mullins, Ewen; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Naegeli, Hanspeter; Moreno, Francisco Javier; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Ardizzone, Michele; Dumont, Antonio Fernandez; Federici, Silvia; Gennaro, Andrea; Gómez Ruiz, Jose Ángel; Goumperis, Tilemachos; Kagkli, Dafni Maria; Lanzoni, Anna; Lenzi, Paolo; Neri, Franco Maria; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos; Raffaello, Tommaso; et al (2022). Assessment of genetically modified maize DP4114 × MON 810 × MIR604 × NK603 and subcombinations, for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2018‐150). EFSA Journal, 20(3):e07134.

Frey, Beat; Varliero, Gilda; Qi, Weihong; Stierli, Beat; Walthert, Lorenz; Brunner, Ivano (2022). Shotgun Metagenomics of Deep Forest Soil Layers Show Evidence of Altered Microbial Genetic Potential for Biogeochemical Cycling. Frontiers in Microbiology, 13:828977.

Mullins, Ewen; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Naegeli, Hanspeter; Moreno, Francisco Javier; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Gennaro, Andrea; Neri, Franco Maria (2022). Statement complementing the EFSA Scientific Opinion on the assessment of genetically modified oilseed rape MS11 for food and feed uses, import and processing, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐BE‐2016‐138). EFSA Journal, 20(3):e07190.

Steffen, Robert (2022). Tick-borne encephalitis (TBE) vaccine ‘FSME-IMMUN’ boosters — response to the letter by Bernard Hoet and Victoria Jenkins. Ticks and Tick-borne Diseases, 13(2):101889.

Lovey, Thibault; Bielecki, M; Gültekin, N; Stettbacher, A; Muggli, F; Stanga, Z; Farnham, A; Deuel, J; Schlagenhauf, Patricia (2022). Illness tracking in SARS-CoV-2 tested persons using a smartphone app: a non-interventional, prospective, cohort study. New Microbes and New Infections, 46:100967.

Nampoothiri, Vrinda; Bonaconsa, Candice; Surendran, Surya; Mbamalu, Oluchi; Nambatya, Winnie; Ahabwe Babigumira, Peter; Ahmad, Raheelah; Castro-Sanchez, Enrique; Broom, Alex; Szymczak, Julia; Zingg, Walter; Gilchrist, Mark; Holmes, Alison; Mendelson, Marc; Singh, Sanjeev; McLeod, Monsey; Charani, Esmita (2022). What does antimicrobial stewardship look like where you are? Global narratives from participants in a massive open online course. JAC - Antimicrobial Resistance, 4(1):dlab186.

van Dorsten, Rebecca T; Reh, Lucia; Trkola, Alexandra; Morris, Lynn; Moore, Penny L (2022). Single-Chain Variable Fragments of Broadly Neutralizing Antibodies Prevent HIV Cell-Cell Transmission. Journal of Virology, 96(4):e0193421.

Borel, Nicole; Greub, Gilbert (2022). International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Chlamydiae, minutes of the closed meeting, 07 October 2021, via Webex. International Journal of Systematic and Evolutionary Microbiology, 72(2):1-3.

Schmitt, Kira; Biggel, Michael; Stephan, Roger; Willi, Barbara (2022). Massive Spread of OXA-48 Carbapenemase-Producing Enterobacteriaceae in the Environment of a Swiss Companion Animal Clinic. Antibiotics, 11(2):213.

Frantal, Daniela; Agatha, Sabine; Beisser, Daniela; Boenigk, Jens; Darienko, Tatyana; Dirren-Pitsch, Gianna; Filker, Sabine; Gruber, Michael; Kammerlander, Barbara; Nachbaur, Laura; Scheffel, Ulrike; Stoeck, Thorsten; Qian, Kuimei; Weißenbacher, Birgit; Pröschold, Thomas; Sonntag, Bettina (2022). Molecular Data Reveal a Cryptic Diversity in the Genus Urotricha (Alveolata, Ciliophora, Prostomatida), a Key Player in Freshwater Lakes, With Remarks on Morphology, Food Preferences, and Distribution. Frontiers in Microbiology, 12:787290.

Emmenegger, Marc; Kumar, Sreedhar Saseendran; Emmenegger, Vishalini; Malinauskas, Tomas; Buettner, Thomas; Rosen, Laura E; Schierack, Peter; Sprinzl, Martin F; Sommer, Clemens J; Lackner, Karl J; Aguzzi, Adriano; Roggenbuck, Dirk; Frauenknecht, Katrin Barbara Magda (2022). Correction: Anti-prothrombin autoantibodies enriched after infection with SARS-CoV-2 and influenced by strength of antibody response against SARS-CoV-2 proteins. PLoS Pathogens, 18(2):e1010289.

De Gruyter, Johan; Weedon, James T; Elst, Evelyne M; Geisen, Stefan; van der Heijden, Marcel G A; Verbruggen, Erik (2022). Arbuscular mycorrhizal inoculation and plant response strongly shape bacterial and eukaryotic soil community trajectories. Soil Biology and Biochemistry, 165:108524.

Gualdi, Stefano; Agnoli, Kirsty; Vitale, Alessandra; Higgins, Steven; Eberl, Leo (2022). Identification of genes required for gold and silver tolerance in Burkholderia cenocepacia H111 by transposon sequencing. Environmental Microbiology, 24(2):737-751.

Wambui, Joseph; Stevens, Marc J A; Sieber, Simon; Cernela, Nicole; Perreten, Vincent; Stephan, Roger (2022). Targeted Genome Mining Reveals the Psychrophilic Clostridium estertheticum Complex as a Potential Source for Novel Bacteriocins, Including Cesin A and Estercticin A. Frontiers in Microbiology, 12:801467.

Biggel, Michael; Etter, Danai; Corti, Sabrina; Brodmann, Peter; Stephan, Roger; Ehling-Schulz, Monika; Johler, Sophia (2022). Whole Genome Sequencing Reveals Biopesticidal Origin of Bacillus thuringiensis in Foods. Frontiers in Microbiology, 12:775669.

Muchaamba, Francis; Eshwar, Athmanya K; Stevens, Marc J A; Stephan, Roger; Tasara, Taurai (2022). Different Shades of Listeria monocytogenes: Strain, Serotype, and Lineage-Based Variability in Virulence and Stress Tolerance Profiles. Frontiers in Microbiology, 12:792162.

Saghaï, Aurélien; Banjeree, Samiran; Degrune, Florine; Edlinger, Anna; García‐Palacios, Pablo; Garland, Gina; van der Heijden, Marcel G A; Herzog, Chantal; Maestre, Fernando T; Pescador, David S; Philippot, Laurent; Rillig, Matthias C; Romdhane, Sana; Hallin, Sara (2022). Diversity of archaea and niche preferences among putative ammonia‐oxidizing Nitrososphaeria dominating across European arable soils. Environmental Microbiology, 24(1):341-356.

Mullins, Ewen; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; George Firbank, Leslie; Guerche, Philippe; Hejatko, Jan; Naegeli, Hanspeter; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Fernandez Dumont, Antonio; Moreno, Francisco Javier (2022). Scientific Opinion on development needs for the allergenicity and protein safety assessment of food and feed products derived from biotechnology. EFSA Journal, 20(1):e07044.

Schlagenhauf, Patricia (2022). New microbes, new infections, new editor, new directions. New Microbes and New Infections, 45:100968.

Muigg, Veronika; Cuénod, Aline; Purushothaman, Srinithi; Siegemund, Martin; Wittwer, Matthias; Pflüger, Valentin; Schmidt, Kristina M; Weisser, Maja; Ritz, Nicole; Widmer, Andreas; Goldenberger, Daniel; Hinic, Vladimira; Roloff, Tim; Søgaard, Kirstine K; Egli, Adrian; Seth-Smith, Helena M B (2022). Diagnostic challenges within the Bacillus cereus-group: finding the beast without teeth. New Microbes and New Infections, 49-50:101040.

Al-Tawfiq, Jaffar A; Gautret, Philippe; Schlagenhauf, Patricia (2022). Infection risks associated with the 2022 FIFA World Cup in Qatar. New Microbes and New Infections, 49-50:101055.

Romdhane, Sana; Spor, Aymé; Banerjee, Samiran; Breuil, Marie-Christine; Bru, David; Chabbi, Abad; Hallin, Sara; van der Heijden, Marcel G A; Saghai, Aurélien; Philippot, Laurent (2022). Land-use intensification differentially affects bacterial, fungal and protist communities and decreases microbiome network complexity. Environmental Microbiome, 17:1.

Sikorski, Johannes; Baumgartner, Vanessa; Birkhofer, Klaus; Boeddinghaus, Runa S; Bunk, Boyke; Fischer, Markus; Fösel, Bärbel U; Friedrich, Michael W; Göker, Markus; Hölzel, Norbert; Huang, Sixing; Huber, Katharina J; Kandeler, Ellen; Klaus, Valentin H; Kleinebecker, Till; Marhan, Sven; von Mering, Christian; Oelmann, Yvonne; Prati, Daniel; Regan, Kathleen M; Richter-Heitmann, Tim; Rodrigues, João F Matias; Schmitt, Barbara; Schöning, Ingo; Schrumpf, Marion; Schurig, Elisabeth; Solly, Emily F; Wolters, Volkmar; Overmann, Jörg (2022). The Evolution of Ecological Diversity in Acidobacteria. Frontiers in Microbiology, 13:715637.

Buchs, Aline; Conde, Alma; Frank, Andrina; Gottet, Celina; Hedrich, Nadja; Lovey, Thibault; Shindleman, Henry; Schlagenhauf, Patricia (2022). The threat of dengue in Europe. New Microbes and New Infections, 49-50:101061.

2021

Caparrós, Esther; Wiest, Reiner; Scharl, Michael; Rogler, Gerhard; Gutiérrez Casbas, Ana; Yilmaz, Bahtiyar; Wawrzyniak, Marcin; Francés, Rubén (2021). Dysbiotic microbiota interactions in Crohn's disease. Gut Microbes, 13:e1949096.

Muchaamba, Francis; Wambui, Joseph; Stephan, Roger; Tasara, Taurai (2021). Cold Shock Proteins Promote Nisin Tolerance in Listeria monocytogenes Through Modulation of Cell Envelope Modification Responses. Frontiers in Microbiology, 12:811939.

Asare, Paul Tetteh; Greppi, Anna; Pennacchia, Alessia; Brenig, Katharina; Geirnaert, Annelies; Schwab, Clarissa; Stephan, Roger; Lacroix, Christophe (2021). In vitro Modeling of Chicken Cecal Microbiota Ecology and Metabolism Using the PolyFermS Platform. Frontiers in Microbiology, 12:780092.

Emmenegger, Marc; Kumar, Sreedhar Saseendran; Emmenegger, Vishalini; Malinauskas, Tomas; Buettner, Thomas; Rose, Laura; Schierack, Peter; Sprinzl, Martin F; Sommer, Clemens J; Lackner, Karl J; Aguzzi, Adriano; Roggenbuck, Dirk; Frauenknecht, Katrin B M (2021). Anti-prothrombin autoantibodies enriched after infection with SARS-CoV-2 and influenced by strength of antibody response against SARS-CoV-2 proteins. PLoS Pathogens, 17(12):e1010118.

Isenring, Julia; Geirnaert, Annelies; Lacroix, Christophe; Stevens, Marc J A (2021). Bistable auto-aggregation phenotype in Lactiplantibacillus plantarum emerges after cultivation in in vitro colonic microbiota. BMC Microbiology, 21:268.

Torres, Diana Albertos; Seth-Smith, Helena M B; Joosse, Nicole; Lang, Claudia; Dubuis, Olivier; Nüesch-Inderbinen, Magdalena; Hinic, Vladimira; Egli, Adrian (2021). Colistin resistance in Gram-negative bacteria analysed by five phenotypic assays and inference of the underlying genomic mechanisms. BMC Microbiology, 21:321.

Nüesch-Inderbinen, Magdalena; Stevens, Marc J A; Cernela, Nicole; Müller, Andrea; Biggel, Michael; Stephan, Roger (2021). Distribution of virulence factors, antimicrobial resistance genes and phylogenetic relatedness among Shiga toxin-producing Escherichia coli serogroup O91 from human infections. International Journal of Medical Microbiology : IJMM, 311(8):151541.

Cadot, Selma; Guan, Hang; Bigalke, Moritz; Walser, Jean-Claude; Jander, Georg; Erb, Matthias; van der Heijden, Marcel G A; Schlaeppi, Klaus (2021). Specific and conserved patterns of microbiota-structuring by maize benzoxazinoids in the field. Microbiome, 9:103.

Biggel, Michael; Nüesch-Inderbinen, Magdalena; Raschle, Susanne; Stevens, Marc J A; Stephan, Roger (2021). Spread of vancomycin-resistant Enterococcus faecium ST133 in the aquatic environment in Switzerland. Journal of Global Antimicrobial Resistance, 27:31-36.

EFSA Panel on Genetically Modified Organisms (GMO); Mullins, Ewen; Bresson, Jean-Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Naegeli, Hanspeter; Moreno, Francisco Javier; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Ardizzone, Michele; De Sanctis, Giacomo; Fernandez Dumont, Antonio; Federici, Silvia; Gennaro, Andrea; Gomez Ruiz, Jose Angel; Kagkli, Dafni Maria; Lanzoni, Anna; Neri, Franco Maria; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos; Raffaello, Tommaso (2021). Assessment of genetically modified maize NK603 × T25 × DAS-40278-9 and subcombinations, for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA-GMO-NL-2019-164). EFSA Journal, 19(12):e06942.

EFSA Scientific Committee; More, Simon John; Bampidis, Vasileios; Benford, Diane; Bragard, Claude; Hernandez-Jerez, Antonio; Bennekou, Susanne Hougaard; Halldorsson, Thorhallur Ingi; Koutsoumanis, Konstantinos Panagiotis; Lambré, Claude; Machera, Kyriaki; Naegeli, Hanspeter; Nielsen, Søren Saxmose; Schlatter, Josef Rudolf; Schrenk, Dieter; Silano, Vittorio; Turck, Dominique; Younes, Maged; Benfenati, Emilio; Crépet, Amélie; Te Biesebeek, Jan Dirk; Testai, Emanuela; Dujardin, Bruno; Dorne, Jean Lou Cm; Hogstrand, Christer (2021). Guidance Document on Scientific criteria for grouping chemicals into assessment groups for human risk assessment of combined exposure to multiple chemicals. EFSA Journal, 19(12):e07033.

Chen, Chaoran; Nadeau, Sarah Ann; Topolsky, Ivan; Manceau, Marc; Huisman, Jana S; Jablonski, Kim Philipp; Fuhrmann, Lara; Dreifuss, David; Jahn, Katharina; Beckmann, Christiane; Redondo, Maurice; Noppen, Christoph; Risch, Lorenz; Risch, Martin; Wohlwend, Nadia; Kas, Sinem; Bodmer, Thomas; Roloff, Tim; Stange, Madlen; Egli, Adrian; Eckerle, Isabella; Kaiser, Laurent; Denes, Rebecca; Feldkamp, Mirjam; Nissen, Ina; Santacroce, Natascha; Burcklen, Elodie; Aquino, Catharine; de Gouvea, Andreia Cabral; Moccia, Maria Domenica; et al (2021). Quantification of the spread of SARS-CoV-2 variant B.1.1.7 in Switzerland. Epidemics, 37:100480.

Gillis-Germitsch, Nina; Kockmann, Tobias; Asmis, Lars M; Tritten, Lucienne; Schnyder, Manuela (2021). The Angiostrongylus vasorum Excretory/Secretory and Surface Proteome Contains Putative Modulators of the Host Coagulation. Frontiers in Cellular and Infection Microbiology, 11:753320.

Stertz, Silke; Hale, Benjamin G (2021). Interferon system deficiencies exacerbating severe pandemic virus infections. Trends in Microbiology, 29(11):973-982.

Heinzer, Daniel; Avar, Merve; Pease, Daniel Patrick; Dhingra, Ashutosh; Yin, Jiang-An; Schaper, Elke; Doğançay, Berre; Emmenegger, Marc; Spinelli, Anna; Maggi, Kevin; Chincisan, Andra; Mead, Simon; Hornemann, Simone; Heutink, Peter; Aguzzi, Adriano (2021). Novel regulators of PrPC biosynthesis revealed by genome-wide RNA interference. PLoS Pathogens, 17(10):e1010013.

Flores Ramos, Stephany; Brugger, Silvio D; Escapa, Isabel Fernandez; Skeete, Chelsey A; Cotton, Sean L; Eslami, Sara M; Gao, Wei; Bomar, Lindsey; Tran, Tommy H; Jones, Dakota S; Minot, Samuel; Roberts, Richard J; Johnston, Christopher D; Lemon, Katherine P (2021). Genomic Stability and Genetic Defense Systems in Dolosigranulum pigrum, a Candidate Beneficial Bacterium from the Human Microbiome. mSystems, 6(5):e0042521.

Läderach, Fabienne; Münz, Christian (2021). Epstein Barr Virus Exploits Genetic Susceptibility to Increase Multiple Sclerosis Risk. Microorganisms, 9(11):2191.

Gerhard, Nicolas; Thurnheer, Thomas; Kreutzer, Susanne; Gmür, Rudolf Dominik; Attin, Thomas; Russo, Giancarlo; Karygianni, Lamprini (2021). Necrotizing Gingivitis: Microbial Diversity and Quantification of Protein Secretion in Necrotizing Gingivitis. Antibiotics, 10(10):1197.

Jia, Yufu; Zhai, Guoqing; Zhu, Shanshan; Liu, Xiaojuan; Schmid, Bernhard; Wang, Zhiheng; Ma, Keping; Feng, Xiaojuan (2021). Plant and microbial pathways driving plant diversity effects on soil carbon accumulation in subtropical forest. Soil Biology and Biochemistry, 161:108375.

Pinheiro, Ericka T; Karygianni, Lamprini; Attin, Thomas; Thurnheer, Thomas (2021). Antibacterial Effect of Sodium Hypochlorite and EDTA in Combination with High-Purity Nisin on an Endodontic-like Biofilm Model. Antibiotics, 10(9):1141.

Wambui, Joseph; Cernela, Nicole; Stevens, Marc J A; Stephan, Roger (2021). Whole Genome Sequence-Based Identification of Clostridium estertheticum Complex Strains Supports the Need for Taxonomic Reclassification Within the Species Clostridium estertheticum. Frontiers in Microbiology, 12:727022.

Steffen, Robert; Erber, W; Schmitt, H J (2021). Can the booster interval for the tick-borne encephalitis (TBE) vaccine ‘FSME-IMMUN’ be prolonged? — A systematic review. Ticks and Tick-borne Diseases, 12(5):101779.

Sauvala, Mikaela; Woivalin, Emma; Kivistö, Rauni; Laukkanen-Ninios, Riikka; Laaksonen, Sauli; Stephan, Roger; Fredriksson-Ahomaa, Maria (2021). Hunted game birds – Carriers of foodborne pathogens. Food Microbiology, 98:103768.

Walter, Adrian; Bodendoerfer, Elias; Kolesnik-Goldmann, Natalia; Mancini, Stefano (2021). Rapid identification of CTX-M-type extended-spectrum β-lactamase-producing Enterobacterales from blood cultures using a multiplex lateral flow immunoassay. Journal of Global Antimicrobial Resistance, 26:130-132.

Niggli, Selina; Wechsler, Tobias; Kümmerli, Rolf (2021). Single-Cell Imaging Reveals That Staphylococcus aureus Is Highly Competitive Against Pseudomonas aeruginosa on Surfaces. Frontiers in Cellular and Infection Microbiology, 11:733991.

Knapp, Deborah; Fernández Castro, Bieito; Marty, Daniel; Loher, Eugen; Köster, Oliver; Wüest, Alfred; Posch, Thomas (2021). The Red Harmful Plague in Times of Climate Change: Blooms of the Cyanobacterium Planktothrix rubescens Triggered by Stratification Dynamics and Irradiance. Frontiers in Microbiology, 12:705914.

Denoth, Luisa; Juillerat, Pascal; Kremer, Andreas E; Rogler, Gerhard; Scharl, Michael; Yilmaz, Bahtiyar; Bluemel, Sena (2021). Modulation of the Mucosa-Associated Microbiome Linked to the PTPN2 Risk Gene in Patients with Primary Sclerosing Cholangitis and Ulcerative Colitis. Microorganisms, 9(8):1752.

Hepojoki, Jussi; Cabrera, Luz E; Hepojoki, Satu; Bellomo, Carla; Kareinen, Lauri; Andersson, Leif C; Vaheri, Antti; Mäkelä, Satu; Mustonen, Jukka; Vapalahti, Olli; Martinez, Valeria; Strandin, Tomas (2021). Hantavirus infection-induced B cell activation elevates free light chains levels in circulation. PLoS Pathogens, 17(8):e1009843.

Audigé, Annette; Böni, Jürg; Schreiber, Peter W; Scheier, Thomas; Buonomano, Roberto; Rudiger, Alain; Braun, Dominique L; Eich, Gerhard; Keller, Dagmar I; Hasse, Barbara; Berger, Christoph; Günthard, Huldrych F; Manrique, Amapola; Trkola, Alexandra; Huber, Michael (2021). Reduced Relative Sensitivity of the Elecsys SARS-CoV-2 Antigen Assay in Saliva Compared to Nasopharyngeal Swabs. Microorganisms, 9(8):1700.

Qiu, Liping; Zhang, Qian; Zhu, Hansong; Reich, Peter B; Banerjee, Samiran; van der Heijden, Marcel G A; Sadowsky, Michael J; Ishii, Satoshi; Jia, Xiaoxu; Shao, Mingan; Liu, Baoyuan; Jiao, Huan; Li, Haiqiang; Wei, Xiaorong (2021). Erosion reduces soil microbial diversity, network complexity and multifunctionality. The ISME journal, 15(8):2474-2489.

EFSA Panel on Genetically Modified Organisms (GMO); Naegeli, Hanspeter; Bresson, Jean Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Ardizzone, Michele; De Sanctis, Giacomo; Fernandez, Antonio; Federici, Silvia; Gennaro, Andrea; Gómez Ruiz, Jose Ángel; Lanzoni, Anna; Neri, Franco Maria; Paraskevopoulos, Konstantinos; Raffaello, Tommaso (2021). Assessment of genetically modified cotton GHB811 for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA-GMO-ES-2018-154). EFSA Journal, 19(8):e06781.

EFSA Scientific Committee (SC); More, Simon John; Bampidis, Vasileios; Bragard, Claude; Halldorsson, Thorhallur Ingi; Hernández-Jerez, Antonio F; Hougaard Bennekou, Susanne; Koutsoumanis, Kostas; Lambré, Claude; Machera, Kyriaki; Naegeli, Hanspeter; Nielsen, Søren Saxmose; Schlatter, Josef; Schrenk, Dieter; Turck, Dominique; Younes, Maged; Aquilina, Gabriele; Bignami, Margherita; Bolognesi, Claudia; Crebelli, Riccardo; Gürtler, Rainer; Marcon, Francesca; Nielsen, Elsa; Vleminckx, Christiane; Carfì, Maria; Martino, Carla; Maurici, Daniela; Parra Morte, Juan; Rossi, Annamaria; Benford, Diane (2021). Guidance on aneugenicity assessment. EFSA Journal, 19(8):e06770.

EFSA Scientific Committee; More, Simon; Bampidis, Vasileios; Benford, Diane; Bragard, Claude; Halldorsson, Thorhallur; Hernández-Jerez, Antonio; Hougaard Bennekou, Susanne; Koutsoumanis, Kostas; Lambré, Claude; Machera, Kyriaki; Naegeli, Hanspeter; Nielsen, Søren; Schlatter, Josef; Schrenk, Dieter; Silano Deceased, Vittorio; Turck, Dominique; Younes, Maged; Castenmiller, Jacqueline; Chaudhry, Qasim; Cubadda, Francesco; Franz, Roland; Gott, David; Mast, Jan; Mortensen, Alicja; Oomen, Agnes G; Weigel, Stefan; Barthelemy, Eric; Rincon, Ana; Tarazona, José; et al (2021). Guidance on risk assessment of nanomaterials to be applied in the food and feed chain: human and animal health. EFSA Journal, 19(8):e06768.

EFSA Scientific Committee; More, Simon; Bampidis, Vasileios; Benford, Diane; Bragard, Claude; Halldorsson, Thorhallur; Hernández-Jerez, Antonio; Bennekou, Susanne Hougaard; Koutsoumanis, Kostas; Lambré, Claude; Machera, Kyriaki; Naegeli, Hanspeter; Nielsen, Søren; Schlatter, Josef; Schrenk, Dieter; Silano Deceased, Vittorio; Turck, Dominique; Younes, Maged; Castenmiller, Jacqueline; Chaudhry, Qasim; Cubadda, Francesco; Franz, Roland; Gott, David; Mast, Jan; Mortensen, Alicja; Oomen, Agnes G; Weigel, Stefan; Barthelemy, Eric; Rincon, Ana; Tarazona, Jose; et al (2021). Guidance on technical requirements for regulated food and feed product applications to establish the presence of small particles including nanoparticles. EFSA Journal, 19(8):e06769.

Brügger, Melanie; Démoulins, Thomas; Barut, G Tuba; Zumkehr, Beatrice; Oliveira Esteves, Blandina I; Mehinagic, Kemal; Haas, Quentin; Schögler, Aline; Rameix-Welti, Marie-Anne; Eléouët, Jean-François; Moehrlen, Ueli; Marti, Thomas M; Schmid, Ralph A; Summerfield, Artur; Posthaus, Horst; Ruggli, Nicolas; Hall, Sean R R; Alves, Marco P (2021). Pulmonary mesenchymal stem cells are engaged in distinct steps of host response to respiratory syncytial virus infection. PLoS Pathogens, 17(7):e1009789.

Treier, Andrea; Stephan, Roger; Stevens, Marc J A; Cernela, Nicole; Nüesch-Inderbinen, Magdalena (2021). High Occurrence of Shiga Toxin-Producing Escherichia coli in Raw Meat-Based Diets for Companion Animals—A Public Health Issue. Microorganisms, 9(8):1556.

Eras, Pien; Simões-Wüst, Ana Paula; Thijs, Carel (2021). Influence of Alternative Lifestyles on Antibiotic Use during Pregnancy, Lactation and in Children. Antibiotics, 10(7):837.

Zürcher, K; Reichmuth, M L; Ballif, M; Loiseau, C; Borrell, S; Reinhard, M; Skrivankova, V; Hömke, R; Sander, P; Avihingsanon, A; Abimiku, A G; Marcy, O; Collantes, J; Carter, E Jane; Wilkinson, R J; Cox, H; Yotebieng, M; Huebner, R; Fenner, L; Böttger, E C; Gagneux, S; Egger, M (2021). Mortality from drug-resistant tuberculosis in high-burden countries comparing routine drug susceptibility testing with whole-genome sequencing: a multicentre cohort study. The Lancet Microbe, 2(7):e320-e330.

Sengupta, Srabasti; Nayak, Barsa; Meuli, Michael; Sander, Peter; Mishra, Snehasish; Sonawane, Avinash (2021). Mycobacterium tuberculosis Phosphoribosyltransferase Promotes Bacterial Survival in Macrophages by Inducing Histone Hypermethylation in Autophagy-Related Genes. Frontiers in Cellular and Infection Microbiology, 11:676456.

Marti, Hanna; Bommana, Sankhya; Read, Timothy D; Pesch, Theresa; Prähauser, Barbara; Dean, Deborah; Borel, Nicole (2021). Generation of Tetracycline and Rifamycin Resistant Chlamydia Suis Recombinants. Frontiers in Microbiology, 12:630293.

Anes, João; Dever, Katherine; Eshwar, Athmanya; Nguyen, Scott; Cao, Yu; Sivasankaran, Sathesh K; Sakalauskaitė, Sandra; Lehner, Angelika; Devineau, Stéphanie; Daugelavičius, Rimantas; Stephan, Roger; Fanning, Séamus; Srikumar, Shabarinath (2021). Analysis of the Oxidative Stress Regulon Identifies soxS as a Genetic Target for Resistance Reversal in Multidrug-Resistant Klebsiella pneumoniae. mBio, 12(3):e0086721.

Horlbog, Jule Anna; Stephan, Roger; Stevens, Marc J A; Overesch, Gudrun; Kittl, Sonja; Napoleoni, Maira; Silenzi, Valentina; Nüesch-Inderbinen, Magdalena; Albini, Sarah (2021). Feedborne Salmonella enterica Serovar Jerusalem Outbreak in Different Organic Poultry Flocks in Switzerland and Italy Linked to Soya Expeller. Microorganisms, 9(7):1367.

Meier, Anita Felicitas; Tobler, Kurt; Michaelsen, Kevin; Vogt, Bernd; Henckaerts, Els; Fraefel, Cornel (2021). Herpes Simplex Virus 1 Coinfection Modifies Adeno-associated Virus Genome End Recombination. Journal of Virology, 95(13):e00486-21.

Meier, Anita Felicitas; Tobler, Kurt; Leisi, Remo; Lkharrazi, Anouk; Ros, Carlos; Fraefel, Cornel (2021). Herpes simplex virus co-infection facilitates rolling circle replication of the adeno-associated virus genome. PLoS Pathogens, 17(6):e1009638.

Suleiman, Marcel; Choffat, Yves; Daugaard, Uriah; Petchey, Owen L (2021). Large and interacting effects of temperature and nutrient addition on stratified microbial ecosystems in a small, replicated, and liquid-dominated Winogradsky column approach. MicrobiologyOpen, 10(3):e1189.

Nüesch-Inderbinen, Magdalena; Raschle, Susanne; Stevens, Marc J A; Schmitt, Kira; Stephan, Roger (2021). Linezolid-resistant Enterococcus faecalis ST16 harbouring optrA on a Tn6674-like element isolated from surface water. Journal of Global Antimicrobial Resistance, 25:89-92.

Kamali-Jamil, Razieh; Vázquez-Fernández, Ester; Tancowny, Brian; Rathod, Vineet; Amidian, Sara; Wang, Xiongyao; Tang, Xinli; Fang, Andrew; Senatore, Assunta; Hornemann, Simone; Dudas, Sandor; Aguzzi, Adriano; Young, Howard S; Wille, Holger (2021). The ultrastructure of infectious L-type bovine spongiform encephalopathy prions constrains molecular models. PLoS Pathogens, 17(6):e1009628.

Seth-Smith, Helena M B; Biggel, Michael; Roloff, Tim; Hinic, Vladimira; Bodmer, Thomas; Risch, Martin; Casanova, Carlo; Widmer, Andreas; Sommerstein, Rami; Marschall, Jonas; Tschudin-Sutter, Sarah; Egli, Adrian (2021). Transition From PCR-Ribotyping to Whole Genome Sequencing Based Typing of Clostridioides difficile. Frontiers in Cellular and Infection Microbiology, 11:681518.

EFSA Panel on Genetically Modified Organisms (GMO); Naegeli, Hanspeter; Bresson, Jean-Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Ardizzone, Michele; Devos, Yann; Federici, Silvia; Dumont, Antonio Fernandez; Gennaro, Andrea; Gómez Ruiz, Jose Ángel; Neri, Franco Maria; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos; Lanzoni, Anna (2021). Assessment of genetically modified oilseed rape 73496 for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA-GMO-NL-2012-109). EFSA Journal, 19(6):e06610.

Echavarría-Consuegra, Liliana; Cook, Georgia M; Busnadiego, Idoia; Lefèvre, Charlotte; Keep, Sarah; Brown, Katherine; Doyle, Nicole; Dowgier, Giulia; Franaszek, Krzysztof; Moore, Nathan A; Siddell, Stuart G; Bickerton, Erica; Hale, Benjamin G; Firth, Andrew E; Brierley, Ian; Irigoyen, Nerea (2021). Manipulation of the unfolded protein response: A pharmacological strategy against coronavirus infection. PLoS Pathogens, 17(6):e1009644.

Garber, Jolene M; Hennet, Thierry; Szymanski, Christine M (2021). Significance of fucose in intestinal health and disease. Molecular Microbiology, 115(6):1086-1093.

Mannweiler, Olga; Pinto-Carbó, Marta; Lardi, Martina; Agnoli, Kirsty; Eberl, Leo (2021). Investigation of Burkholderia cepacia Complex Methylomes via Single-Molecule, Real-Time Sequencing and Mutant Analysis. Journal of Bacteriology, 203(12):00683-20.

Rusanen, Juuso; Kareinen, Lauri; Szirovicza, Leonora; Uğurlu, Hasan; Levanov, Lev; Jääskeläinen, Anu; Ahava, Maarit; Kurkela, Satu; Saksela, Kalle; Hedman, Klaus; Vapalahti, Olli; Hepojoki, Jussi (2021). A Generic, Scalable, and Rapid Time-Resolved Förster Resonance Energy Transfer-Based Assay for Antigen Detection—SARS-CoV-2 as a Proof of Concept. mBio, 12(3):e00902-21.

Oyewole, Oluwaseun Rume-Abiola; Lang, Phung; Albrich, Werner C; Wissel, Kerstin; Leib, Stephen L; Casanova, Carlo; Hilty, Markus (2021). The Impact of Pneumococcal Conjugate Vaccine (PCV) Coverage Heterogeneities on the Changing Epidemiology of Invasive Pneumococcal Disease in Switzerland, 2005-2019. Microorganisms, 9(5):1078.

Muchaamba, Francis; Stephan, Roger; Tasara, Taurai (2021). Listeria monocytogenes Cold Shock Proteins: Small Proteins with A Huge Impact. Microorganisms, 9(5):1061.

Risely, Alice; Gillingham, Mark A F; Béchet, Arnaud; Brändel, Stefan; Heni, Alexander C; Heurich, Marco; Menke, Sebastian; Manser, Marta B; et al (2021). Phylogeny- and Abundance-Based Metrics Allow for the Consistent Comparison of Core Gut Microbiome Diversity Indices Across Host Species. Frontiers in Microbiology, 12:659918.

Etter, Danai; Jenni, Céline; Tasara, Taurai; Johler, Sophia (2021). Mild Lactic Acid Stress Causes Strain-Dependent Reduction in SEC Protein Levels. Microorganisms, 9(5):1014.

González, Jaime; Salvador, Manuel; Özkaya, Özhan; Spick, Matt; Reid, Kate; Costa, Catia; Bailey, Melanie J; Avignone Rossa, Claudio; Kümmerli, Rolf; Jiménez, José I (2021). Loss of a pyoverdine secondary receptor in Pseudomonas aeruginosa results in a fitter strain suitable for population invasion. The ISME journal, 15(5):1330-1343.

Ofiti, Nicholas O E; Zosso, Cyrill U; Soong, Jennifer L; Solly, Emily F; Torn, Margaret S; Wiesenberg, Guido L B; Schmidt, Michael W I (2021). Warming promotes loss of subsoil carbon through accelerated degradation of plant-derived organic matter. Soil Biology and Biochemistry, 156:108185.

EFSA Scientific Committee; More, Simon; Bampidis, Vasileios; Benford, Diane; Bragard, Claude; Halldorsson, Thorhallur; Hernández-Jerez, Antonio; Bennekou, Susanne Hougaard; Koutsoumanis, Kostas; Machera, Kyriaki; Naegeli, Hanspeter; Nielsen, Søren Saxmose; Schlatter, Josef; Schrenk, Dieter; Silano, Vittorio; Turck, Dominique; Younes, Maged; Arnold, Gerard; Dorne, Jean-Lou; Maggiore, Angelo; Pagani, Stephen; Szentes, Csaba; Terry, Simon; Tosi, Simone; Vrbos, Domagoj; Zamariola, Giorgia; Rortais, Agnes (2021). A systems-based approach to the environmental risk assessment of multiple stressors in honey bees. EFSA Journal, 19(5):e06607.

Hüsler, Dario; Steiner, Bernhard; Welin, Amanda; Striednig, Bianca; Swart, A Leoni; Molle, Virginie; Hilbi, Hubert; Letourneur, François (2021). Dictyostelium lacking the single atlastin homolog Sey1 shows aberrant ER architecture, proteolytic processes and expansion of the Legionella-containing vacuole. Cellular Microbiology, 23(5):e13318.

EFSA Panel on Genetically Modified Organisms (GMO); Naegeli, Hanspeter; Bresson, Jean Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Frenzel, Thomas; Gómez Ruiz, Jose Ángel (2021). Statement complementing the EFSA Scientific Opinion on application (EFSA-GMO-NL-2010-85) for authorisation of food and feed containing, consisting of and produced from genetically modified soybean MON 87769 × MON 89788. EFSA Journal, 19(5):e06589.

Smith, Nicholas C; Sinden, Robert E; Ramakrishnan, Chandra (2021). Editorial: Get Over the Gut: Apicomplexan Parasite Interaction, Survival and Stage Progression in Vertebrate and Invertebrate Digestive Tracts. Frontiers in Cellular and Infection Microbiology, 11:680555-30.

Isenring, Julia; Geirnaert, Annelies; Hall, Alex R; Jans, Christoph; Lacroix, Christophe; Stevens, Marc J A (2021). In Vitro Gut Modeling as a Tool for Adaptive Evolutionary Engineering of Lactiplantibacillus plantarum. mSystems, 6(2):01085-20.

Dmitrijeva, Marija; Kahlert, Christian R; Feigelman, Rounak; Kleiner, Rebekka L; Nolte, Oliver; Albrich, Werner C; Baty, Florent; von Mering, Christian (2021). Strain-Resolved Dynamics of the Lung Microbiome in Patients with Cystic Fibrosis. mBio, 12(2):e02863-20.

Fenn, Samuel; Dubern, Jean-Frédéric; Cigana, Cristina; De Simone, Maura; Lazenby, James; Juhas, Mario; Schwager, Stephan; Bianconi, Irene; Döring, Gerd; Elmsley, Jonas; Eberl, Leo; Williams, Paul; Bragonzi, Alessandra; Cámara, Miguel (2021). NirA is an alternative nitrite reductase from Pseudomonas aeruginosa with potential as an antivirulence target. mBio, 12(2):e00207-21.

Karygianni, Lamprini; Paqué, Pune N; Attin, Thomas; Thurnheer, Thomas (2021). Single DNase or Proteinase Treatment Induces Change in Composition and Structural Integrity of Multispecies Oral Biofilms. Antibiotics, 10(4):400.

Heredia‐Ponce, Zaira; Gutiérrez‐Barranquero, José Antonio; Purtschert‐Montenegro, Gabriela; Eberl, Leo; de Vicente, Antonio; Cazorla, Francisco M (2021). Role of extracellular matrix components in the formation of biofilms and their contribution to the biocontrol activity of Pseudomonas chlororaphis PCL1606. Environmental Microbiology, 23(4):2086-2101.

Bernal, Patricia; Eberl, Leo; de Jonge, Ronnie; Lepek, Viviana C; Malone, Jacob G (2021). Understanding plant–microorganism interactions to envision a future of sustainable agriculture. Environmental Microbiology, 23(4):1809-1811.

EFSA Panel on Genetically Modified Organisms (GMO); Naegeli, Hanspeter; Bresson, Jean Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Álvarez, Fernando; Ardizzone, Michele; Fernandez, Antonio; Gennaro, Andrea; Gómez Ruiz, Jose Ángel; Kagkli, Dafni Maria; Lanzoni, Anna; Neri, Franco Maria; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos; Raffaello, Tommaso; Streissl, Franz; De Sanctis, Giacomo (2021). Assessment of genetically modified soybean GMB151 for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA-GMO-NL-2018-153). EFSA Journal, 19(4):e06424.

Rodionov, Roman N; Biener, Anne; Spieth, Peter; Achleitner, Martin; Hölig, Kristina; Aringer, Martin; Mingrone, Geltrude; Corman, Victor M; Drosten, Christian; Bornstein, Stefan R; Tonn, Torsten; Kolditz, Martin (2021). Potential benefit of convalescent plasma transfusions in immunocompromised patients with COVID-19. The Lancet Microbe, 2(4):e138.

Perez-Mon, Carla; Qi, Weihong; Vikram, Surendra; Frossard, Aline; Makhalanyane, Thulani; Cowan, Don; Frey, Beat (2021). Shotgun metagenomics reveals distinct functional diversity and metabolic capabilities between 12 000-year-old permafrost and active layers on Muot da Barba Peider (Swiss Alps). Microbial genomics, 7:000558.

Espinosa-Gongora, Carmen; Jessen, Lisbeth Rem; Dyar, Oliver James; Bousquet-Melou, Alain; González-Zorn, Bruno; Pulcini, Céline; Re, Giovanni; Schwarz, Stefan; Timofte, Dorina; Toutain, Pierre-Louis; Guardabassi, Luca; Müntener, Cedric R; Naegeli, Hanspeter; ESCMID Study Group for Antimicrobial stewardshiP (ESGAP); The PREPARE-VET Working Group; ESCMID Study Group for Veterinary Microbiology (ESGVM) (2021). Towards a Better and Harmonized Education in Antimicrobial Stewardship in European Veterinary Curricula. Antibiotics, 10(4):364.

Goncalves Cabecinhas, Ana Rita; Roloff, Tim; Stange, Madlen; Bertelli, Claire; Huber, Michael; Ramette, Alban; Chen, Chaoran; Nadeau, Sarah; Gerth, Yannick; Yerly, Sabine; Opota, Onya; Pillonel, Trestan; Schuster, Tobias; Metzger, Cesar M J A; Sieber, Jonas; Bel, Michael; Wohlwend, Nadia; Baumann, Christian; Koch, Michel C; Bittel, Pascal; Leuzinger, Karoline; Brunner, Myrta; Suter-Riniker, Franziska; Berlinger, Livia; Søgaard, Kirstine K; Beckmann, Christiane; Noppen, Christoph; Redondo, Maurice; Steffen, Ingrid; Seth-Smith, Helena M B; et al (2021). SARS-CoV-2 N501Y Introductions and Transmissions in Switzerland from Beginning of October 2020 to February 2021—Implementation of Swiss-Wide Diagnostic Screening and Whole Genome Sequencing. Microorganisms, 9(4):677.

Huber, Michael; Schreiber, Peter Werner; Scheier, Thomas; Audigé, Annette; Buonomano, Roberto; Rudiger, Alain; Braun, Dominique L; Eich, Gerhard; Keller, Dagmar I; Hasse, Barbara; Böni, Jürg; Berger, Christoph; Günthard, Huldrych F; Manrique, Amapola; Trkola, Alexandra (2021). High Efficacy of Saliva in Detecting SARS-CoV-2 by RT-PCR in Adults and Children. Microorganisms, 9(3):642.

Breuninger, Taylor A; Wawro, Nina; Breuninger, Jakob; Reitmeier, Sandra; Clavel, Thomas; Six-Merker, Julia; Pestoni, Giulia; Rohrmann, Sabine; Rathmann, Wolfgang; Peters, Annette; Grallert, Harald; Meisinger, Christa; Haller, Dirk; Linseisen, Jakob (2021). Associations between habitual diet, metabolic disease, and the gut microbiota using latent Dirichlet allocation. Microbiome, 9:61.

Hetzel, Udo; Korzyukov, Y; Keller, S; Szirovicza, L; Pesch, T; Vapalahti, O; Kipar, A; Hepojoki, Jussi (2021). Experimental Reptarenavirus Infection of Boa constrictor and Python regius. Journal of Virology, 95(7):e01968-20.

Forster, Dominik; Qu, Zhishuai; Pitsch, Gianna; Bruni, Estelle P; Kammerlander, Barbara; Pröschold, Thomas; Sonntag, Bettina; Posch, Thomas; Stoeck, Thorsten (2021). Lake ecosystem robustness and resilience inferred from a climate-stressed protistan plankton network. Microorganisms, 9(2):549.

Capozza, Paolo; Lanave, Gianvito; Diakoudi, Georgia; Stasi, Fabio; Ghergo, Paola; Ricci, Dominga; Santo, Giacinto; Arena, Gianluca; Grillo, Isidoro; Delle Donne, Elisabetta; Di Lisio, Francesca; Zini, Eric; Callegari, Carolina; Valente, Luciana; Camero, Michele; Di Martino, Barbara; Beatty, Julia; Barrs, Vanessa R; Buonavoglia, Canio; Martella, Vito (2021). A longitudinal observational study in two cats naturally-infected with hepadnavirus. Veterinary Microbiology, 254:108999.

Meyer Sauteur, P M; Kleger, G -R; Albrich, W C (2021). Acute respiratory distress syndrome during the COVID-19 pandemic: not only SARS-CoV-2. New Microbes and New Infections, 40:100836.

Zosso, Cyrill U; Wiesenberg, Guido L B (2021). Methylation procedures affect PLFA results more than selected extraction parameters. Journal of Microbiological Methods, 182:106164.

Rohner, Lea; Marti, Hanna; Torgerson, Paul; Hoffmann, Karolin; Jelocnik, Martina; Borel, Nicole (2021). Prevalence and molecular characterization of C. pecorum detected in Swiss fattening pigs. Veterinary Microbiology, 256:109062.

EFSA Scientific Committee; More, Simon; Bampidis, Vasileios; Benford, Diane; Bragard, Claude; Halldorsson, Thorhallur; Hougaard Bennekou, Susanne; Koutsoumanis, Kostas; Machera, Kyriaki; Naegeli, Hanspeter; Nielsen, Søren; Schlatter, Josef; Schrenk, Dieter; Silano, Vittorio; Turck, Dominique; Younes, Maged; Aggett, Peter; Castenmiller, Jacqueline; Giarola, Alessandra; de Sesmaisons-Lecarré, Agnès; Tarazona, José; Verhagen, Hans; Hernández-Jerez, Antonio (2021). Statement on the derivation of Health-Based Guidance Values (HBGVs) for regulated products that are also nutrients. EFSA Journal, 19(3):e06479.

LeibundGut-Landmann, Salomé; Dawson, Thomas L (2021). Editorial: Malassezia: A skin commensal yeast impacting both health and disease. Frontiers in Cellular and Infection Microbiology, 11:659219.

Schmitt, Kira; Kuster, Stefan P; Zurfluh, Katrin; Jud, Rahel S; Sykes, Jane E; Stephan, Roger; Willi, Barbara (2021). Transmission chains of extended-spectrum beta-lactamase-producing enterobacteriaceae at the companion animal veterinary clinic–household interface. Antibiotics, 10(2):171.

Zhang, Xiaozhou; Borbet, Timothy C; Fallegger, Angela; Wipperman, Matthew F; Blaser, Martin J; Müller, Anne (2021). An Antibiotic-Impacted Microbiota Compromises the Development of Colonic Regulatory T Cells and Predisposes to Dysregulated Immune Responses. mBio, 12:e03335-20.

Pinheiro, Ericka T; Karygianni, Lamprini; Attin, Thomas; Thurnheer, Thomas (2021). Antibacterial Effect of High-Purity Nisin Alone and in Combination with D-Amino Acids or Chlorhexidine in an Endodontic-Like Biofilm Model. Antibiotics, 10(2):149.

Frey, Pascal M; Baer, Julian; Bergada-Pijuan, Judith; Lawless, Conor; Bühler, Philipp K; Kouyos, Roger D; Lemon, Katherine P; Zinkernagel, Annelies S; Brugger, Silvio D (2021). Quantifying Variation in Bacterial Reproductive Fitness: a High-Throughput Method. mSystems, 6(1):e01323-20.

Hanna, Nabil; Koliwer-Brandl, Hendrik; Lefrançois, Louise H; Kalinina, Vera; Cardenal-Muñoz, Elena; Appiah, Joddy; Leuba, Florence; Gueho, Aurélie; Hilbi, Hubert; Soldati, Thierry; Barisch, Caroline (2021). Zn 2+ Intoxication of Mycobacterium marinum during Dictyostelium discoideum Infection Is Counteracted by Induction of the Pathogen Zn 2+ Exporter CtpC. mBio, 12:e01313-20.

Scherrer, Simone; Stephan, Roger (2021). Novel multiplex TaqMan assay for differentiation of the four major pathogenic Brachyspira species in swine. MicrobiologyOpen, 10:e1169.

EFSA Panel on Genetically Modified Organisms (GMO); Naegeli, Hanspeter; Bresson, Jean-Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Nogue, Fabien; Rostoks, Nils; Sanchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Casacuberta, Josep; De Schrijver, Adinda; Messean, Antoine; Patron, Nicola; Zurbriggen, Matias; Alvarez, Fernando; Devos, Yann; Gennaro, Andrea; Streissl, Franz; Papadopoulou, Nikoletta; Mullins, Ewen (2021). Evaluation of existing guidelines for their adequacy for the molecular characterisation and environmental risk assessment of genetically modified plants obtained through synthetic biology. EFSA Journal, 19(2):e06301.

Schnurr, Etyene; Paqué, Pune N; Attin, Thomas; Nanni, Paolo; Grossmann, Jonas; Holtfreter, Silva; Bröker, Barbara M; Kohler, Christian; Diep, Binh An; Ribeiro, Apoena de Aguiar; Thurnheer, Thomas (2021). Staphylococcus aureus Interferes with Streptococci Spatial Distribution and with Protein Expression of Species within a Polymicrobial Oral Biofilm. Antibiotics, 10(2):116.

Wallace, Megan A; Coffman, Kelsey A; Gilbert, Clément; Ravindran, Sanjana; Albery, Gregory F; Abbott, Jessica; et al; Kapun, Martin (2021). The discovery, distribution, and diversity of DNA viruses associated with Drosophila melanogaster in Europe. Virus Evolution, 7(1):1-23.

Karygianni, Lamprini; Ruf, Sandra; Hellwig, Elmar; Follo, Marie; Vach, Kirstin; Al-Ahmad, Ali (2021). Antimicrobial Photoinactivation of In Situ Oral Biofilms by Visible Light Plus Water-Filtered Infrared A and Tetrahydroporphyrin-tetratosylate (THPTS). Microorganisms, 9:145.

Muchaamba, Francis; Stoffers, Helena; Blase, Ralf; von Ah, Ueli; Tasara, Taurai (2021). Potassium Lactate as a Strategy for Sodium Content Reduction without Compromising Salt-Associated Antimicrobial Activity in Salami. Foods, 10:114.

Tayyrov, Annageldi; Schnetzler, Michèle; Gillis-Germitsch, Nina; Schnyder, Manuela (2021). Genetic diversity of the cardiopulmonary canid nematode Angiostrongylus vasorum within and between rural and urban fox populations. Infection, Genetics and Evolution, 87:104618.

EFSA Panel on Genetically Modified Organisms (GMO); Naegeli, Hanspeter; Bresson, Jean-Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Álvarez, Fernando; Ardizzone, Michele; De Sanctis, Giacomo; Devos, Yann; Fernandez, Antonio; Gennaro, Andrea; Gómez Ruiz, Jose Ángel; Lanzoni, Anna; Neri, Franco Maria; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos; Raffaello, Tommaso (2021). Assessment of genetically modified maize 1507 × MIR162 × MON810 × NK603 and subcombinations, for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA-GMO-NL-2015-127). EFSA Journal, 19(1):e06348.

EFSA Panel on Genetically Modified Organisms (GMO); Naegeli, Hanspeter; Bresson, Jean-Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Álvarez, Fernando; Ardizzone, Michele; De Sanctis, Giacomo; Fernandez, Antonio; Gennaro, Andrea; Gómez Ruiz, Jose Ángel; Kagkli, Dafni Maria; Lanzoni, Anna; Neri, Franco Maria; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos; Raffaello, Tommaso (2021). Assessment of genetically modified maize MON 87427 × MON 87460 × MON 89034 × 1507 × MON 87411 × 59122 and subcombinations, for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA-GMO-NL-2017-139). EFSA Journal, 19(1):e06351.

Weiss, Gisela Adrienne; Grabinger, Thomas; Glaus Garzon, Jesus; Hasler, Tobias; Greppi, Anna; Lacroix, Christophe; Khanzhin, Nikolay; Hennet, Thierry (2021). Intestinal inflammation alters mucosal carbohydrate foraging and monosaccharide incorporation into microbial glycans. Cellular Microbiology, 23(1):e13269.

Personnic, Nicolas; Striednig, Bianca; Hilbi, Hubert (2021). Quorum sensing controls persistence, resuscitation, and virulence of Legionella subpopulations in biofilms. The ISME journal, 15(1):196-210.

Mujakić, Izabela; Andrei, Adrian-Stefan; Shabarova, Tanja; Fecskeová, Lívia Kolesár; Salcher, Michaela M; Piwosz, Kasia; Ghai, Rohit; Koblížek, Michal (2021). Common Presence of Phototrophic Gemmatimonadota in Temperate Freshwater Lakes. mSystems, 6(2):01241-20.

Durán‐Viseras, Ana; Andrei, Adrian-Stefan; Vera‐Gargallo, Blanca; Ghai, Rohit; Sánchez‐Porro, Cristina; Ventosa, Antonio (2021). Culturomics-based genomics sheds light on the ecology of the new haloarchaeal genus Halosegnis. Environmental Microbiology, 23(7):3418-3434.

Otaru, Nize; Ye, Kun; Mujezinovic, Denisa; Berchtold, Laura; Constancias, Florentin; Cornejo, Fabián A; Krzystek, Adam; de Wouters, Tomas; Braegger, Christian; Lacroix, Christophe; Pugin, Benoit (2021). GABA Production by Human Intestinal Bacteroides spp.: Prevalence, Regulation, and Role in Acid Stress Tolerance. Frontiers in Microbiology, 12:656895.

Bulzu, Paul-Adrian; Kavagutti, Vinicius Silva; Chiriac, Maria-Cecilia; Vavourakis, Charlotte D; Inoue, Keiichi; Kandori, Hideki; Andrei, Adrian-Stefan; Ghai, Rohit (2021). Heliorhodopsin Evolution Is Driven by Photosensory Promiscuity in Monoderms. mSphere, 6(6):e00661-21.

Münz, Christian (2021). Immune Escape by Non-coding RNAs of the Epstein Barr Virus. Frontiers in Microbiology, 12:657387.

Urban, Christian; Blom, Alette A; Pfrengle, Saskia; Walker-Meikle, Kathleen; Stone, Anne C; Inskip, Sarah A; Schuenemann, Verena J (2021). One Health Approaches to Trace Mycobacterium leprae's Zoonotic Potential Through Time. Frontiers in Microbiology, 12:762263.

Irwin, Adam D; Coin, Lachlan J M; Harris, Patrick N A; Cotta, Menino Osbert; Bauer, Michelle J; Buckley, Cameron; et al; Schlapbach, Luregn J (2021). Optimising Treatment Outcomes for Children and Adults Through Rapid Genome Sequencing of Sepsis Pathogens. A Study Protocol for a Prospective, Multi-Centre Trial (DIRECT). Frontiers in Cellular and Infection Microbiology, 11:667680.

Baricz, Andreea; Chiriac, Cecilia Maria; Andrei, Adrian-Stefan; Bulzu, Paul‐Adrian; Levei, Erika Andrea; Cadar, Oana; Battes, Karina Paula; Cîmpean, Mirela; Șenilă, Marin; Cristea, Adorján; Muntean, Vasile; Alexe, Mircea; Coman, Cristian; Szekeres, Edina Kriszta; Sicora, Cosmin Ionel; Ionescu, Artur; Blain, David; O'Neill, William Kenneth; Edwards, Jessica; Hallsworth, John Edward; Banciu, Horia Leonard (2021). Spatio-temporal insights into microbiology of the freshwater-to-hypersaline, oxic-hypoxic-euxinic waters of Ursu Lake. Environmental Microbiology, 23(7):3523-3540.

Münz, Christian (2021). The Role of Lytic Infection for Lymphomagenesis of Human γ-Herpesviruses. Frontiers in Cellular and Infection Microbiology, 11:605258.

2020

Tektas, Sibel; Thurnheer, Thomas; Eliades, Theodore; Attin, Thomas; Karygianni, Lamprini (2020). Initial Bacterial Adhesion and Biofilm Formation on Aligner Materials. Antibiotics, 9(12):908.

Heredia-Ponce, Zaira; Gutiérrez-Barranquero, Jose Antonio; Purtschert-Montenegro, Gabriela; Eberl, Leo; Cazorla, Francisco M; de Vicente, Antonio (2020). Biological role of EPS from Pseudomonas syringae pv. syringae UMAF0158 extracellular matrix, focusing on a Psl-like polysaccharide. npj Biofilms and Microbiomes, 6:875.

Zamudio, Roxana; Haigh, Richard D; Ralph, Joseph D; De Ste Croix, Megan; Tasara, Taurai; Zurfluh, Katrin; Kwun, Min Jung; Millard, Andrew D; Bentley, Stephen D; Croucher, Nicholas J; Stephan, Roger; Oggioni, Marco R (2020). Lineage‐specific evolution and gene flow in Listeria monocytogenes are independent of bacteriophages. Environmental Microbiology, 22(12):5058-5072.

Kuratli, Jasmin; Leonard, Cory Ann; Nufer, Lisbeth; Marti, Hanna; Schoborg, Robert; Borel, Nicole (2020). Maraviroc, celastrol and azelastine alter Chlamydia trachomatis development in HeLa cells. Journal of Medical Microbiology, 69(12):1351-1366.

Zurfluh, Katrin; Treier, Andrea; Schmitt, Kira; Stephan, Roger (2020). Mobile fosfomycin resistance genes in Enterobacteriaceae—An increasing threat. MicrobiologyOpen, 9(12):e1135.

Scheffold, Alexander; Bacher, Petra; LeibundGut-Landmann, Salomé (2020). T cell immunity to commensal fungi. Current Opinion in Microbiology, 58:116-123.

Caduff, Nicole; McHugh, Donal; Murer, Anita; Rämer, Patrick; Raykova, Ana; Landtwing, Vanessa; Rieble, Lisa; Keller, Christian W; Prummer, Michael; Hoffmann, Laurent; Lam, Janice K P; Chiang, Alan K S; Raulf, Friedrich; Azzi, Tarik; Berger, Christoph; Rubic-Schneider, Tina; Traggiai, Elisabetta; Lünemann, Jan D; Kammüller, Michael; Münz, Christian (2020). Correction: Immunosuppressive FK506 treatment leads to more frequent EBV-associated lymphoproliferative disease in humanized mice. PLoS Pathogens, 16(12):e1009167.

Peros, Georgios; Gronki, Ferda; Molitor, Nadine; Streit, Michael; Sugimoto, Kiyoshi; Karrer, Urs; Lunger, Fabian; Adamina, Michel; Breitenstein, Stefan; Lamdark, Tenzin (2020). Organizing a COVID-19 triage unit: a Swiss perspective. Emerging Microbes and Infections, 9(1):1506-1513.

Martínez-González, Nahara Anani; Di Gangi, Stefania; Pichierri, Giuseppe; Neuner-Jehle, Stefan; Senn, Oliver; Plate, Andreas (2020). Time Trends and Factors Associated with Antibiotic Prescribing in Swiss Primary Care (2008 to 2020). Antibiotics, 9(11):837.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian C; Epstein, Michelle M; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco J; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose J; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Bonsall, Michael B; Mumford, John; Wimmer, Ernst A; Devos, Yann; Paraskevopoulos, Konstantinos; Firbank, Leslie G (2020). Adequacy and sufficiency evaluation of existing EFSA guidelines for the molecular characterisation, environmental risk assessment and post‐market environmental monitoring of genetically modified insects containing engineered gene drives. EFSA Journal, 18(11):e06297.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Álvarez, Fernando; Ardizzone, Michele; De Sanctis, Giacomo; Devos, Yann; Dumont, Antonio Fernandez; Federici, Silvia; Gennaro, Andrea; Gómez Ruiz, Jose Ángel; Lanzoni, Anna; Neri, Franco Maria; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos; Raffaello, Tommaso (2020). Scientific Opinion on application EFSA‐GMO‐NL‐2016‐132 for authorisation of genetically modified of insect‐resistant and herbicide‐tolerant soybean DAS–81419–2 × DAS–44406–6 for food and feed uses, import and processing submitted in accordance with Regulation (EC) No 1829/2003 by Dow Agrosciences LCC. EFSA Journal, 18(11):e06302.

Crippa, S; Kägi, G; Graf, L; Meyer Sauteur, P M; Kohler, P (2020). Stroke in a young adult with mild COVID-19 suggesting endotheliitis. New Microbes and New Infections, 38:100781.

Le Moigne, Alizée; Bartosiewicz, Maciej; Schaepman‐Strub, Gabriela; Abiven, Samuel; Pernthaler, Jakob (2020). The biogeochemical variability of Arctic thermokarst ponds is reflected by stochastic and niche‐driven microbial community assembly processes. Environmental Microbiology, 22(11):4847-4862.

Senn, Viola; Bassler, Dirk; Choudhury, Rashikh; Scholkmann, Felix; Righini-Grunder, Franziska; Vuille-dit-Bile, Raphael N; Restin, Tanja (2020). Microbial Colonization From the Fetus to Early Childhood—A Comprehensive Review. Frontiers in Cellular and Infection Microbiology, 10:573735.

Zbinden, Florian R; De Ste Croix, Megan; Grandgirard, Denis; Haigh, Richard D; Vacca, Irene; Zamudio, Roxana; Goodall, Emily C A; Stephan, Roger; Oggioni, Marco R; Leib, Stephen L (2020). Pathogenic differences of Type 1 restriction-modification allele variants in experimental Listeria monocytogenes meningitis. Frontiers in Cellular and Infection Microbiology, 10:590657.

Steiner, Fiona; Pavlovic, Jovan (2020). Subcellular Localization of MxB Determines Its Antiviral Potential against Influenza A Virus. Journal of Virology, 94(22):e00125-20.

Mattila, Mirjami; Somervuo, Panu; Korkeala, Hannu; Stephan, Roger; Tasara, Taurai (2020). Transcriptomic and phenotypic analyses of the Sigma B-dependent characteristics and the synergism between Sigma B and Sigma L in Listeria monocytogenes EGD-e. Microorganisms, 8(11):1644.

Šimek, Karel; Grujčić, Vesna; Mukherjee, Indranil; Kasalický, Vojtěch; Nedoma, Jiří; Posch, Thomas; Mehrshad, Maliheh; Salcher, Michaela M (2020). Cascading effects in freshwater microbial food webs by predatory Cercozoa, Katablepharidacea and ciliates feeding on aplastidic bacterivorous cryptophytes. FEMS Microbiology Ecology, 96(10):fiaa121.

Wambui, Joseph; Eshwar, Athmanya K; Aalto-Araneda, Mariella; Pöntinen, Anna; Stevens, Marc J A; Njage, Patrick M K; Tasara, Taurai (2020). The analysis of field strains isolated from food, animal and clinical sources uncovers natural mutations in Listeria monocytogenes Nisin resistance genes. Frontiers in Microbiology, 11:549531.

More, Simon; Bampidis, Vasileios; Benford, Diane; Bragard, Claude; Halldorsson, Thorhallur; Hernández‐Jerez, Antonio; Susanne, Hougaard Bennekou; Koutsoumanis, Kostas; Machera, Kyriaki; Naegeli, Hanspeter; Nielsen, Søren Saxmose; Schlatter, Josef; Schrenk, Dieter; Silano, Vittorio; Turck, Dominique; Younes, Maged; Glandorf, Boet; Herman, Lieve; Tebbe, Christoph; Vlak, Just; Aguilera, Jaime; Schoonjans, Reinhilde; Cocconcelli, Pier Sandro (2020). Evaluation of existing guidelines for their adequacy for the microbial characterisation and environmental risk assessment of microorganisms obtained through synthetic biology. EFSA Journal, 18(10):e06263.

Swart, Anna Leoni; Gomez-Valero, Laura; Buchrieser, Carmen; Hilbi, Hubert (2020). Evolution and function of bacterial RCC1 repeat effectors. Cellular Microbiology, 22(10):e13246.

Jang, Hyein; Chase, Hannah R; Gangiredla, Jayanthi; Grim, Christopher J; Patel, Isha R; Kothary, Mahendra H; Jackson, Scott A; Mammel, Mark K; Carter, Laurenda; Negrete, Flavia; Finkelstein, Samantha; Weinstein, Leah; Yan, QiongQiong; Iversen, Carol; Pagotto, Franco; Stephan, Roger; Lehner, Angelika; Eshwar, Athmanya K; Fanning, Séamus; Farber, Jeffery; Gopinath, Gopal R; Tall, Ben D; Pava-Ripoll, Monica (2020). Analysis of the molecular diversity among cronobacter species isolated from filth flies using targeted PCR, pan genomic DNA microarray, and whole Genome sequencing analyses. Frontiers in Microbiology, 11:561204.

Muchaamba, Francis; Stephan, Roger; Tasara, Taurai (2020). β-Phenylethylamine as a natural food additive shows antimicrobial activity against Listeria monocytogenes on Ready-to-Eat Foods. Foods, 9(10):1363.

Sobieraj, Anna M; Huemer, Markus; Zinsli, Léa V; Meile, Susanne; Keller, Anja P; Röhrig, Christian; Eichenseher, Fritz; Shen, Yang; Zinkernagel, Annelies S; Loessner, Martin J; Schmelcher, Mathias (2020). Engineering of long-circulating peptidoglycan hydrolases enables efficient treatment of systemic Staphylococcus aureus infection. mBio, 11(5):e01781-20.

Martínez-González, Nahara Anani; Keizer, Ellen; Plate, Andreas; Coenen, Samuel; Valeri, Fabio; Verbakel, Jan Yvan Jos; Rosemann, Thomas; Neuner-Jehle, Stefan; Senn, Oliver (2020). Point-of-Care C-Reactive protein testing to reduce antibiotic prescribing for respiratory tract infections in primary care: Systematic review and meta-analysis of randomised controlled trials. Antibiotics, 9(9):E610.

Busnadiego, Idoia; Fernbach, Sonja; Pohl, Marie O; Karakus, Umut; Huber, Michael; Trkola, Alexandra; Stertz, Silke; Hale, Benjamin G (2020). Antiviral Activity of Type I, II, and III Interferons Counterbalances ACE2 Inducibility and Restricts SARS-CoV-2. mBio, 11(5):e01928-20.

Brugger, Silvio D; Eslami, Sara M; Pettigrew, Melinda M; Escapa, Isabel F; Henke, Matthew T; Kong, Yong; Lemon, Katherine P (2020). Dolosigranulum pigrum cooperation and competition in human nasal microbiota. mSphere, 5(5):e00852-20.

Vitale, Alessandra; Paszti, Sarah; Takahashi, Kohei; Toyofuku, Masanori; Pessi, Gabriella; Eberl, Leo (2020). Mapping of the denitrification pathway in Burkholderia thailandensis by genome-wide mutant profiling. Journal of Bacteriology, 202(23):00304-20.

Applen Clancey, Shelly; Ruchti, Fiorella; LeibundGut-Landmann, Salomé; Heitman, Joseph; Ianiri, Giuseppe (2020). A Novel Mycovirus Evokes Transcriptional Rewiring in the Fungus Malassezia and Stimulates Beta Interferon Production in Macrophages. mBio, 11:e01534-20.

Kragh, Martin Laage; Muchaamba, Francis; Tasara, Taurai; Truelstrup Hansen, Lisbeth (2020). Cold-shock proteins affect desiccation tolerance, biofilm formation and motility in Listeria monocytogenes. International Journal of Food Microbiology, 329:108662.

Van Nguyen, Scott; Muthappa, Dechamma Mundanda; Eshwar, Athmanya K; Buckley, James F; Murphy, Brenda P; Stephan, Roger; Lehner, Angelika; Fanning, Séamus (2020). Comparative genomic insights into Yersinia hibernica – a commonly misidentified Yersinia enterocolitica-like organism. Microbial genomics, 6(9):mgen000411.

Donhauser, Johanna; Niklaus, Pascal A; Rousk, Johannes; Larose, Catherine; Frey, Beat (2020). Temperatures beyond the community optimum promote the dominance of heat-adapted, fast growing and stress resistant bacteria in alpine soils. Soil Biology and Biochemistry, 148:107873.

Appert, Olivia; Garcia, Alejandro Ramirez; Frei, Remo; Roduit, Caroline; Constancias, Florentin; Neuzil-Bunesova, Vera; Ferstl, Ruth; Zhang, Jianbo; Akdis, Cezmi; Lauener, Roger; Lacroix, Christophe; Schwab, Clarissa (2020). Initial butyrate producers during infant gut microbiota development are endospore formers. Environmental Microbiology, 22(9):3909-3921.

Dervas, Eva; Hepojoki, Jussi; Smura, Teemu; Prähauser, Barbara; Windbichler, Katharina; Blümich, Sandra; Ramis, Antonio; Hetzel, Udo; Kipar, Anja (2020). Serpentoviruses: More than Respiratory Pathogens. Journal of Virology, 94(18):e00649-20.

Spieler, Eva E; Moritz, Eva; Stertz, Silke; Hale, Benjamin G (2020). Application of a biologically contained reporter system to study gain-of-function H5N1 influenza a viruses with pandemic potential. mSphere, 5(4):e00423-20.

Vandenbussche, Ian; Sass, Andrea; Pinto-Carbó, Marta; Mannweiler, Olga; Eberl, Leo; Coenye, Tom (2020). DNA methylation epigenetically regulates gene expression in Burkholderia cenocepacia and controls biofilm formation, cell aggregation, and motility. mSphere, 5(4):00455-20.

Tennert, Christian; Zinovieva, Yoana; Shishkov, Kalin; Karygianni, Lamprini; Altenburger, Makus Jörg; Wierichs, Richard J; Al-Ahmad, Ali (2020). Improving the Efficiency of Photodynamic Chemotherapy in Root Canals against Enterococcus faecalis In Vitro. Antibiotics, 9(9):543.

Wambui, Joseph; Cernela, Nicole; Corti, Sabrina; Stephan, Roger (2020). Comparative genome analysis and phenotypic characterization of Clostridium gasigenes CGAS001 isolated from chilled vacuum-packed lamb meat. Frontiers in Microbiology, 11:2048.

Burchard, Thomas; Karygianni, Lamprini; Hellwig, Elmar; Wittmer, Annette; Al-Ahmad, Ali (2020). Microbial Composition of Oral Biofilms after Visible Light and Water-Filtered Infrared a Radiation (VIS+wIRA) in Combination with Indocyanine Green (ICG) as Photosensitizer. Antibiotics, 9(9):532.

Frick-Cheng, Arwen E; Sintsova, Anna; Smith, Sara N; Krauthammer, Michael; Eaton, Kathryn A; Mobley, Harry L T (2020). The Gene Expression Profile of Uropathogenic Escherichia coli in Women with Uncomplicated Urinary Tract Infections Is Recapitulated in the Mouse Model. mBio, 11(4):e01412-20..

Vach, Kirstin; Al-Ahmad, Ali; Anderson, Annette; Woelber, Johan Peter; Karygianni, Lamprini; Wittmer, Annette; Hellwig, Elmar (2020). Analysing the Relationship between Nutrition and the Microbial Composition of the Oral Biofilm-Insights from the Analysis of Individual Variability. Antibiotics, 9(8):479.

Eicher, Corinne; Ruiz Subira, Andres; Corti, Sabrina; Meusburger, Arnulf; Stephan, Roger; Guldimann, Claudia (2020). Growth potential of Listeria monocytogenes in three different salmon products. Foods, 9(8):1048.

Karygianni, L; Ren, Z; Koo, H; Thurnheer, T (2020). Biofilm Matrixome: Extracellular Components in Structured Microbial Communities. Trends in Microbiology, 28(8):668-681.

Gu, Shaohua; Wei, Zhong; Shao, Zhengying; Friman, Ville-Petri; Cao, Kehao; Yang, Tianjie; Kramer, Jos; Wang, Xiaofang; Li, Mei; Mei, Xinlan; Xu, Yangchun; Shen, Qirong; Kümmerli, Rolf; Jousset, Alexandre (2020). Competition for iron drives phytopathogen control by natural rhizosphere microbiomes. Nature Microbiology, 5(8):1002-1010.

More, Simon; Bambidis, Vasileos; Benford, Diane; Bragard, Claude; Hernandez‐Jerez, Antonio; Bennekou, Susanne Hougaard; Koutsoumanis, Kostas; Machera, Kyriaki; Naegeli, Hanspeter; Nielsen, Soren Saxmose; Schlatter, Josef R; Schrenk, Dieter; Silano, Vittorio; Turck, Dominique; Younes, Maged; Fletcher, Tony; Greiner, Matthias; Ntzani, Evangelia; Pearce, Neil; Vinceti, Marco; Ciccolallo, Laura; Georgiadis, Marios; Gervelmeyer, Andrea; Halldorsson, Thorhallur I (2020). Draft for internal testing Scientific Committee guidance on appraising and integrating evidence from epidemiological studies for use in EFSA's scientific assessments. EFSA Journal, 18(8):e06221.

Tennert, Christian; Reinmuth, Ann-Christin; Bremer, Katharina; Al-Ahmad, Ali; Karygianni, Lamprini; Hellwig, Elmar; Vach, Kirstin; Ratka-Krüger, Petra; Wittmer, Annette; Woelber, Johan Peter (2020). An oral health optimized diet reduces the load of potential cariogenic and periodontal bacterial species in the supragingival oral plaque: A randomized controlled pilot study. MicrobiologyOpen, 9(8):e1056.

The Respond Study Group (2020). How to RESPOND to Modern Challenges for People Living with HIV: A Profile for a New Cohort Consortium. Microorganisms, 8(8):1164.

Muchaamba, Francis; Eshwar, Athmanya K; von Ah, Ueli; Stevens, Marc J A; Tasara, Taurai (2020). Evolution of Listeria monocytogenes during a persistent human prosthetic hip joint infection. Frontiers in Microbiology, 11:1726.

Vitale, Alessandra; Pessi, Gabriella; Urfer, Matthias; Locher, Hans H; Zerbe, Katja; Obrecht, Daniel; Robinson, John A; Eberl, Leo (2020). Identification of genes required for resistance to peptidomimetic antibiotics by transposon sequencing. Frontiers in Microbiology, 11:1681.

Habjanič, Jelena; Mathew, Anugraha; Eberl, Leo; Freisinger, Eva (2020). Deciphering the Enigmatic Function of Pseudomonas Metallothioneins. Frontiers in Microbiology, 11:1709.

Nemeth, Johannes; Olson, Gregory S; Rothchild, Alissa C; Jahn, Ana N; Mai, Dat; Duffy, Fergal J; Delahaye, Jared L; Srivatsan, Sanjay; Plumlee, Courtney R; Urdahl, Kevin B; Gold, Elizabeth S; Aderem, Alan; Diercks, Alan H (2020). Contained Mycobacterium tuberculosis infection induces concomitant and heterologous protection. PLoS Pathogens, 16(7):e1008655.

Liu, Yilei; Bellich, Barbara; Hug, Sebastian; Eberl, Leo; Cescutti, Paola; Pessi, Gabriella (2020). The exopolysaccharide Cepacian plays a role in the establishment of the Paraburkholderia phymatum – Phaseolus vulgaris symbiosis. Frontiers in Microbiology, 11:1600.

Emond-Rheault, Jean-Guillaume; Hamel, Jérémie; Jeukens, Julie; Freschi, Luca; Kukavica-Ibrulj, Irena; Boyle, Brian; Tamber, Sandeep; Malo, Danielle; Franz, Eelco; Burnett, Elton; Daigle, France; Arya, Gitanjali; Sanderson, Kenneth; Wiedmann, Martin; Slawson, Robin M; Weadge, Joel T; Stephan, Roger; Bekal, Sadjia; Gruenheid, Samantha; Goodridge, Lawrence D; Levesque, Roger C (2020). The Salmonella enterica plasmidome as a reservoir of antibiotic resistance. Microorganisms, 8(7):1016.

Persson, B David; Lenman, Annasara; Frängsmyr, Lars; Schmid, Markus; Ahlm, Clas; Plückthun, Andreas; Jenssen, Håvard; Arnberg, Niklas (2020). Lactoferrin-hexon interactions mediate CAR-independent adenovirus infection of human respiratory cells. Journal of Virology, 94(14):e00542-20.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Ardizzone, Michele; Lanzoni, Anna; Paraskevopoulos, Konstantinos (2020). Statement complementing the EFSA Scientific Opinion on application (EFSA‐GMO‐NL‐2009‐75) for placing on the market of genetically modified oilseed rape Ms8 × Rf3 × GT73 and subcombinations, which have not been authorised previously (i.e. Ms8 × GT73 and Rf3 × GT73) independently of their origin, for food and feed uses, import and processing, with the exception of isolated seed protein for food, under Regulation (EC) No 1829/2003), taking into consideration additional information. EFSA Journal, 18(7):e06200.

Sorce, Silvia; Nuvolone, Mario; Russo, Giancarlo; Chincisan, Andra; Heinzer, Daniel; Avar, Merve; Pfammatter, Manuela; Schwarz, Petra; Delic, Mirzet; Müller, Micha; Hornemann, Simone; Sanoudou, Despina; Scheckel, Claudia; Aguzzi, Adriano (2020). Genome-wide transcriptomics identifies an early preclinical signature of prion infection. PLoS Pathogens, 16(6):e1008653.

Fritschi, Janine; Marti, Hanna; Seth-Smith, Helena M B; Aeby, Sébastien; Greub, Gilbert; Meli, Marina L; Hofmann-Lehmann, Regina; Mühldorfer, Kristin; Stokar-Regenscheit, Nadine; Wiederkehr, Danja; Pilo, Paola; Van Den Broek, Peggy Rüegg-; Borel, Nicole (2020). Prevalence and phylogeny of Chlamydiae and hemotropic mycoplasma species in captive and free-living bats. BMC Microbiology, 20(1):182.

Pyöriä, Lari; Jokinen, Maija; Toppinen, Mari; Salminen, Henri; Vuorinen, Tytti; Hukkanen, Veijo; Schmotz, Constanze; Elbasani, Endrit; Ojala, Päivi M; Hedman, Klaus; Välimaa, Hannamari; Perdomo, Maria F (2020). HERQ-9 Is a New Multiplex PCR for Differentiation and Quantification of All Nine Human Herpesviruses. mSphere, 5(3):e00265-20.

Etter, Danai; Corti, Sabrina; Spirig, Simona; Cernela, Nicole; Stephan, Roger; Johler, Sophia (2020). Staphylococcus aureus population structure and genomic profiles in asymptomatic carriers in Switzerland. Frontiers in Microbiology, 11:1289.

Kuca, Thibaud; Passler, Thomas; Newcomer, Benjamin W; Neill, John D; Galik, Patricia K; Riddell, Kay P; Zhang, Yijing; Bayles, Darrell O; Walz, Paul H (2020). Changes introduced in the open reading frame of bovine viral diarrhea virus during serial infection of pregnant swine. Frontiers in Microbiology, 11:1138.

Greppi, Anna; Asare, Paul Tetteh; Schwab, Clarissa; Zemp, Niklaus; Stephan, Roger; Lacroix, Christophe (2020). Isolation and comparative genomic analysis of reuterin-producing Lactobacillus reuteri from the chicken gastrointestinal tract. Frontiers in Microbiology, 11:1166.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Álvarez, Fernando; Ardizzone, Michele; De Sanctis, Giacomo; Devos, Yann; Dumont, Antonio Fernandez; Gennaro, Andrea; Gómez Ruiz, Jose Ángel; Lanzoni, Anna; Neri, Franco Maria; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos; Raffaello, Tommaso (2020). Assessment of genetically modified maize MZIR098 for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐DE‐2017‐142). EFSA Journal, 18(6):e06171.

Hausmann, Annika; Russo, Giancarlo; Grossmann, Jonas; Zünd, Mirjam; Schwank, Gerald; Aebersold, Ruedi; Liu, Yansheng; Sellin, Mikael E; Hardt, Wolf-Dietrich (2020). Germ-free and microbiota-associated mice yield small intestinal epithelial organoids with equivalent and robust transcriptome/proteome expression phenotypes. Cellular Microbiology, 22(6):e13191.

Hochstrasser, Ramon; Hilbi, Hubert (2020). Legionella quorum sensing meets cyclic-di-GMP signaling. Current Opinion in Microbiology, 55(Juni):9-16.

Hochstrasser, Ramon; Hutter, Cedric A J; Arnold, Fabian M; Bärlocher, Kevin; Seeger, Markus A; Hilbi, Hubert (2020). The structure of the Legionella response regulator LqsR reveals amino acids critical for phosphorylation and dimerization. Molecular Microbiology, 113(6):1070-1084.

Duguet, Thomas B; Soichot, Julien; Kuzyakiv, Rostyslav; Malmström, Lars; Tritten, Lucienne (2020). Extracellular vesicle-contained microRNA of C. elegans as a tool to decipher the molecular basis of nematode parasitism. Frontiers in Cellular and Infection Microbiology, 10:217.

Jiménez-Meléndez, Alejandro; Ramakrishnan, Chandra; Hehl, Adrian B; Russo, Giancarlo; Álvarez-García, Gema (2020). RNA-seq analyses reveal that endothelial activation and fibrosis are induced early and progressively by Besnoitia besnoiti host cell invasion and proliferation. Frontiers in Cellular and Infection Microbiology, 10:218.

Lukic, Dejana; Karygianni, Lamprini; Flury, Manuela; Attin, Thomas; Thurnheer, Thomas. Endodontic-Like Oral Biofilms as Models for Multispecies Interactions in Endodontic Diseases. 2020, University of Zurich, Faculty of Medicine.

Sparber, Florian; Ruchti, Fiorella; LeibundGut-Landmann, Salomé (2020). Host Immunity to Malassezia in Health and Disease. Frontiers in Cellular and Infection Microbiology, 10:198.

Bluemel, Sena; Wang, Lirui; Kuelbs, Claire; Moncera, Kelvin; Torralba, Manolito; Singh, Harinder; Fouts, Derrick E; Schnabl, Bernd (2020). Intestinal and hepatic microbiota changes associated with chronic ethanol administration in mice. Gut Microbes, 11(3):265-275.

Heini, Nicole; Stephan, Roger; Filter, Matthias; Plaza-Rodriguez, Carolina; Frentzel, Hendrik; Ehling-Schulz, Monika; Johler, Sophia (2020). Temperature-dependent growth characteristics of Bacillus thuringiensis in a ratatouille food model. Journal of Food Protection, 83(5):816-820.

Sahrmann, Philipp; Gilli, Fabienne; Wiedemeier, Daniel B; Attin, Thomas; Schmidlin, Patrick R; Karygianni, Lamprini (2020). The Microbiome of Peri-Implantitis: A Systematic Review and Meta-Analysis. Microorganisms, 8(5):661.

Knobloch, Paulina; Koliwer-Brandl, Hendrik; Arnold, Fabian M; Hanna, Nabil; Gonda, Imre; Adenau, Sophia; Personnic, Nicolas; Barisch, Caroline; Seeger, Markus A; Soldati, Thierry; Hilbi, Hubert (2020). Mycobacterium marinum produces distinct mycobactin and carboxymycobactin siderophores to promote growth in broth and phagocytes. Cellular Microbiology, 22(5):e13163.

De Vrieze, Mout; Varadarajan, Adithi R; Schneeberger, Kerstin; Bailly, Aurélien; Rohr, Rudolf P; Ahrens, Christian H; Weisskopf, Laure (2020). Linking comparative genomics of nine potato-associated Pseudomonas isolates with their differing biocontrol potential against late blight. Frontiers in Microbiology, 11:857.

Meerwein, Milton; Tarnutzer, Andrea; Böni, Michelle; Van Bambeke, Françoise; Hombach, Michael; Zinkernagel, Annelies S (2020). Increased azithromycin susceptibility of multidrug-resistant gram-negative bacteria on RPMI-1640 agar assessed by disk diffusion testing. Antibiotics, 9(5):218.

Forconi, Catherine S; Oduor, Cliff I; Oluoch, Peter O; Ong'echa, John M; Münz, Christian; Bailey, Jeffrey A; Moormann, Ann M (2020). A New Hope for CD56negCD16pos NK Cells as Unconventional Cytotoxic Mediators: An Adaptation to Chronic Diseases. Frontiers in Cellular and Infection Microbiology, 10:162.

Unterweger, Christine; Schwarz, Lukas; Jelocnik, Martina; Borel, Nicole; Brunthaler, René; Inic-Kanada, Aleksandra; Marti, Hanna (2020). Isolation of tetracycline-resistant Chlamydia suis from a pig herd affected by reproductive disorders and conjunctivitis. Antibiotics, 9(4):E187.

Röhrig, Christian; Huemer, Markus; Lorgé, Dominique; Luterbacher, Samuel; Phothaworn, Preeda; Schefer, Christopher; Sobieraj, Anna M; Zinsli, Léa V; Mairpady Shambat, Srikanth; Leimer, Nadja; Keller, Anja P; Eichenseher, Fritz; Shen, Yang; Korbsrisate, Sunee; Zinkernagel, Annelies S; Loessner, Martin J; Schmelcher, Mathias (2020). Targeting hidden pathogens: cell-penetrating enzybiotics eradicate intracellular drug-resistant staphylococcus aureus. mBio, 11(2):e00209-e00220.

Ertuğrul, Bülent; Uçkay, İlker; Schöni, Madlaina; Peter-Riesch, Bettina; Lipsky, Benjamin A (2020). Management of diabetic foot infections in the light of recent literature and new international guidelines. Expert Review of Anti-Infective Therapy, 18(4):293-305.

Russell, George C; Zadoks, Ruth N; Willoughby, Kim; Bachofen, Claudia (2020). Bovine viral diarrhoea virus loses quasispecies diversity rapidly in culture. Microbial genomics, 6(4):e000343.

Argenta, Fernando Froner; Hepojoki, Jussi; Smura, Teemu; Szirovicza, Leonora; Hammerschmitt, Márcia Elisa; Driemeier, David; Kipar, Anja; Hetzel, Udo (2020). Identification of reptarenaviruses, hartmaniviruses, and a novel chuvirus in captive native Brazilian Boa Constrictors with boid inclusion body disease. Journal of Virology, 94(11):e00001-20.

Scherrer, Simone; Rademacher, Fenja; Spoerry Serrano, Nathalie; Schrenzel, Jacques; Gottschalk, Marcelo; Stephan, Roger; Landolt, Patricia (2020). Rapid high resolution melting assay to differentiate Streptococcus suis serotypes 2, 1/2, 1, and 14. MicrobiologyOpen, 9(4):e995.

Schoster, Angelika; van Spijk, Julia N; Damborg, P; Moodley, A; Kirchgaessner, C; Hartnack, Sonja; Schmitt, S (2020). The effect of different antimicrobial treatment regimens on the faecal shedding of ESBL-producing Escherichia coli in horses. Veterinary Microbiology, 243:108617.

Caduff, Nicole; McHugh, Donal; Murer, Anita; Rämer, Patrick; Raykova, Ana; Landtwing, Vanessa; Rieble, Lisa; Keller, Christian W; Prummer, Michael; Hoffmann, Laurent; Lam, Janice K P; Chiang, Alan K S; Raulf, Friedrich; Azzi, Tarik; Berger, Christoph; Rubic-Schneider, Tina; Traggiai, Elisabetta; Lünemann, Jan D; Kammüller, Michael; Münz, Christian (2020). Immunosuppressive FK506 treatment leads to more frequent EBV-associated lymphoproliferative disease in humanized mice. PLoS Pathogens, 16(4):e1008477.

Zhang, Xiaozhou; Arnold, Isabelle C; Müller, Anne (2020). Mechanisms of persistence, innate immune activation and immunomodulation by the gastric pathogen Helicobacter pylori. Current Opinion in Microbiology, 54:1-10.

Krauss, Jochen; Vikuk, Veronika; Young, Carolyn A; Krischke, Markus; Mueller, Martin J; Baerenfaller, Katja (2020). Epichloë Endophyte Infection Rates and Alkaloid Content in Commercially Available Grass Seed Mixtures in Europe. Microorganisms, 8(4):498.

Shrestha, Neeta; Tobler, Kurt; Uster, Stephanie; Sigrist-Nagy, Romina; Hierweger, Melanie Michaela; Ackermann, Mathias (2020). Ovine herpesvirus 2 encodes a previously unrecognized protein, pOv8.25, that targets mitochondria and triggers apoptotic cell death. Journal of Virology, 94(8):e01536-19.

Swart, A Leoni; Steiner, Bernhard; Gomez-Valero, Laura; Schütz, Sabina; Hannemann, Mandy; Janning, Petra; Irminger, Michael; Rothmeier, Eva; Buchrieser, Carmen; Itzen, Aymelt; Panse, Vikram Govind; Hilbi, Hubert (2020). Divergent Evolution of Legionella RCC1 Repeat Effectors Defines the Range of Ran GTPase Cycle Targets. mBio, 11(2):e00405-20.

Szirovicza, Leonora; Hetzel, Udo; Kipar, Anja; Martinez-Sobrido, Luis; Vapalahti, Olli; Hepojoki, Jussi (2020). Snake deltavirus utilizes envelope proteins of different viruses to generate infectious particles. mBio, 11(2):e03250-19.

Piwosz, Kasia; Shabarova, Tanja; Pernthaler, Jakob; Posch, Thomas; Šimek, Karel; Porcal, Petr; Salcher, Michaela M (2020). Bacterial and eukaryotic small-subunit amplicon data do not provide a quantitative picture of microbial communities, but they are reliable in the context of ecological interpretations. mSphere, 5(2):00052-20.

Kramer, Jos; Özkaya, Özhan; Kümmerli, Rolf (2020). Bacterial siderophores in community and host interactions. Nature Reviews. Microbiology, 18(3):152-163.

Díaz-Sánchez, Adrian Alberto; Meli, Marina L; Obregón Álvarez, Dasiel; Fonseca-Rodríguez, Osvaldo; Cabezas-Cruz, Alejandro; Hofmann-Lehmann, Regina; Corona-González, Belkis (2020). Development and application of a multiplex TaqMan® real-time qPCR assay for the simultaneous detection of Anaplasma marginale and Theileria annulata and molecular characterization of Anaplasma marginale from cattle in Western Cuba. Ticks and Tick-borne Diseases, 11(2):101356.

Anes, João; Van Nguyen, Scott; Eshwar, Athmanya K; McCabe, Evonne; Macori, Guerrino; Hurley, Daniel; Lehner, Angelika; Fanning, Séamus (2020). Molecular characterisation of multi-drug resistant Escherichia coli of bovine origin. Veterinary Microbiology, 242:108566.

Cernikova, Lenka; Faso, Carmen; Hehl, Adrian B (2020). Phosphoinositide-binding proteins mark, shape and functionally modulate highly-diverged endocytic compartments in the parasitic protist Giardia lamblia. PLoS Pathogens, 16(2):e1008317.

Wist, Valerie; Morach, Marina; Schneeberger, Marianne; Cernela, Nicole; Stevens, Marc J A; Zurfluh, Katrin; Stephan, Roger; Nüesch-Inderbinen, Magdalena (2020). Phenotypic and genotypic traits of vancomycin-resistant enterococci from healthy food-producing animals. Microorganisms, 8(2):261.

Jang, Hyein; Gopinath, Gopal R; Eshwar, Athmanya; Srikumar, Shabarinath; Nguyen, Scott; Gangiredla, Jayanthi; Patel, Isha R; Finkelstein, Samantha B; Negrete, Flavia; Woo, JungHa; Lee, YouYoung; Fanning, Séamus; Stephan, Roger; Tall, Ben D; Lehner, Angelika (2020). The secretion of toxins and other exoproteins of cronobacter: role in virulence, adaption, and persistence. Microorganisms, 8(2):229.

Bernardi, Sara; Karygianni, Lamprini; Filippi, Andreas; Anderson, Annette Carola; Zürcher, Andrea; Hellwig, Elmar; Vach, Kirstin; Macchiarelli, Guido; Al-Ahmad, Ali (2020). Combining culture and culture-independent methods reveals new microbial composition of halitosis patients' tongue biofilm. MicrobiologyOpen, 9(2):e958.

Krishnan, Aarti; Kloehn, Joachim; Lunghi, Matteo; Chiappino-Pepe, Anush; Waldman, Benjamin S; Nicolas, Damien; Varesio, Emmanuel; Hehl, Adrian B; Lourido, Sebastian; Hatzimanikatis, Vassily; Soldati-Favre, Dominique (2020). Functional and computational genomics reveal unprecedented flexibility in stage-specific toxoplasma metabolism. Cell Host & Microbe, 27(2):290-306.

Rezzoagli, Chiara; Granato, Elisa T; Kümmerli, Rolf (2020). Harnessing bacterial interactions to manage infections: a review on the opportunistic pathogen Pseudomonas aeruginosa as a case example. Journal of Medical Microbiology, 69(2):147-161.

Winter, S; Meyer-Lindenberg, Andrea; Wolf, G; Reese, S; Nolff, M C (2020). In vitro evaluation of the decontamination effect of cold atmospheric argon plasma on selected bacteria frequently encountered in small animal bite injuries. Journal of Microbiological Methods, 169:105728.

Hanna, Nabil; Kicka, Sébastien; Chiriano, Gianpaolo; Harrison, Christopher; Sakouhi, Hajer Ouertatani; Trofimov, Valentin; Kranjc, Agata; Nitschke, Jahn; Pagni, Marco; Cosson, Pierre; Hilbi, Hubert; Scapozza, Leonardo; Soldati, Thierry (2020). Identification of Anti-Mycobacterium and Anti-Legionella Compounds With Potential Distinctive Structural Scaffolds From an HD-PBL Using Phenotypic Screens in Amoebae Host Models. Frontiers in Microbiology, 11:266.

Buttafuoco, Antonino; Michaelsen, Kevin; Tobler, Kurt; Ackermann, Mathias; Fraefel, Cornel; Eichwald, Catherine (2020). Conserved rotavirus NSP5 and VP2 domains interact and affect viroplasm. Journal of Virology, 94(7):e01965-19.

Asare, Paul Tetteh; Zurfluh, Katrin; Greppi, Anna; Lynch, Denise; Schwab, Clarissa; Stephan, Roger; Lacroix, Christophe (2020). Reuterin demonstrates potent antimicrobial activity against a broad panel of human and poultry meat Campylobacter spp. isolates. Microorganisms, 8(1):78.

Laroucau, K; Aaziz, R; Lécu, A; Laidebeure, S; Marquis, O; Vorimore, F; Thierry, S; Briend-Marchal, A; Miclard, J; Izembart, A; Borel, N; Redon, L (2020). A cluster of Chlamydia serpentis cases in captive snakes. Veterinary Microbiology, 240:108499.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Álvarez, Fernando; Ardizzone, Michele; Dumont, Antonio Fernandez; Devos, Yann; Gennaro, Andrea; Gómez Ruiz, Jose Ángel; Lanzoni, Anna; Neri, Franco Maria; Paraskevopoulos, Konstantinos (2020). Assessment of genetically modified soybean SYHT0H2 for food and feed uses, import and processing, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐DE‐2012‐111). EFSA Journal, 18(1):e05946.

Ballas, Panagiotis; Rückert, Christian; Wagener, Karen; Drillich, Marc; Kämpfer, Peter; Busse, Hans-Jürgen; Ehling-Schulz, Monika (2020). Corynebacterium endometrii sp. nov., isolated from the uterus of a cow with endometritis. International Journal of Systematic and Evolutionary Microbiology, 70(1):146-152.

Wambui, Joseph; Püntener, Sabrina; Corti, Sabrina; Cernela, Nicole; Stephan, Roger (2020). Detection of Psychrophilic Clostridium spp. causing “Blown Pack” spoilage in meat juice samples from chilled vacuum-packed beef and lamb meat imported from different countries to Switzerland. Journal of Food Protection, 83(1):56-59.

Kramer, Jos; López Carrasco, Miguel Ángel; Kümmerli, Rolf (2020). Positive linkage between bacterial social traits reveals that homogeneous rather than specialised behavioral repertoires prevail in natural Pseudomonas communities. FEMS Microbiology Ecology, 96(1):fiz185.

Egli, Adrian; Koch, Daniel; Danuser, Jürg; Hendriksen, Rene S; Driesen, Susanne; Schmid, Diana Coman; Neher, Richard; Mäusezahl, Mirjam; Seth-Smith, Helena M B; Bloemberg, Guido; Tschudin-Sutter, Sarah; Endimiani, Andrea; Perreten, Vincent; Greub, Gilbert; Schrenzel, Jacques; Stephan, Roger (2020). Symposium report: One Health meets sequencing. Microbes and infection, 22(1):1-7.

Karakus, Umut; Pohl, Marie O; Stertz, Silke (2020). Breaking the convention: Sialoglycan variants, Co-receptors and Alternative Receptors for Influenza A Virus Entry. Journal of Virology, 94(4):e01357-19.

Veronesi, Eva; Darpel, Karin; Gubbins, Simon; Batten, Carrie; Nomikou, Kyriaki; Mertens, Peter; Carpenter, Simon (2020). Diversity of transmission outcomes following co-infection of sheep with strains of bluetongue virus serotype 1 and 8. Microorganisms, 8(6):851.

Kappler, Katharina; Lasanajak, Yi; Smith, David F; Opitz, Lennart; Hennet, Thierry (2020). Increased Antibody Response to Fucosylated Oligosaccharides and Fucose-Carrying Bacteroides Species in Crohn's Disease. Frontiers in Microbiology, 11:1553.

Meerwein, Milton. Increased Azithromycin Susceptibility of Multidrug-Resistant Gram-Negative Bacteria on RPMI-1640 Agar Assessed by Disk Diffusion Testing. 2020, University of Zurich, Faculty of Medicine.

Häffner, Nicola; Bär, Julian; Dengler Haunreiter, Vanina; Mairpady Shambat, Srikanth; Seidl, Kati; Crosby, Heidi A; Horswill, Alexander R; Zinkernagel, Annelies S (2020). Intracellular environment and agr system affect colony size heterogeneity of Staphylococcus aureus. Frontiers in Microbiology, 11:1415.

Lamrabet, Otmane; Melotti, Astrid; Burdet, Frédéric; Hanna, Nabil; Perrin, Jackie; Nitschke, Jahn; Pagni, Marco; Hilbi, Hubert; Soldati, Thierry; Cosson, Pierre (2020). Transcriptional Responses of Dictyostelium discoideum Exposed to Different Classes of Bacteria. Frontiers in Microbiology, 11:410.

2019

Nur, Selim; Sparber, Florian; Lemberg, Christina; Guiducci, Eva; Schweizer, Tiziano A; Zwicky, Pascale; Becher, Burkhard; LeibundGut-Landmann, Salomé (2019). IL-23 supports host defense against systemic Candida albicans infection by ensuring myeloid cell survival. PLoS Pathogens, 15(12):e1008115.

Banerjee, Samiran; Schlaeppi, Klaus; van der Heijden, Marcel G A (2019). Reply to ‘Can we predict microbial keystones?’. Nature Reviews. Microbiology, 17(3):194.

Kulik, Eva M; Thurnheer, Thomas; Karygianni, Lamprini; Walter, Clemens; Sculean, Anton; Eick, Sigrun (2019). Antibiotic Susceptibility Patterns of Aggregatibacter actinomycetemcomitans and Porphyromonas gingivalis Strains from Different Decades. Antibiotics, 8(4):253.

Hernandez, Matthew M; Fahrny, Audrey; Jayaprakash, Anitha; Gers-Huber, Gustavo; Dillon-White, Marsha; Audigé, Annette; Mulder, Lubbertus C F; Sachidanandam, Ravi; Speck, Roberto F; Simon, Viviana (2019). Impact of suboptimal APOBEC3G neutralization on the emergence of HIV drug resistance in humanized mice. Journal of Virology, 94(5):0.

Kuenzli, Esther; Büdel, Thomas; Bernasconi, Odette J; Schlagenhauf, Patricia; Florek, Peter; Gültekin, Nejla; Hatz, Christoph; Endimiani, Andrea (2019). Intestinal colonisation with multidrug-resistant Enterobacteriaceae: Screening of Swiss military deployed to Kosovo. Journal of Global Antimicrobial Resistance, 19:93-95.

Kavagutti, Vinicius S; Andrei, Adrian-Stefan; Mehrshad, Maliheh; Salcher, Michaela M; Ghai, Rohit (2019). Phage-centric ecological interactions in aquatic ecosystems revealed through ultra-deep metagenomics. Microbiome, 7:135.

Landolt, Patricia; Stephan, Roger; Stevens, Marc J A; Scherrer, Simone (2019). Three‐reaction high‐resolution melting assay for rapid differentiation of Mycobacterium tuberculosis complex members. MicrobiologyOpen, 8(12):e919.

Work, Thierry M; Dagenais, Julie; Willimann, Anna; Balazs, George; Mansfield, Kate; Ackermann, Mathias (2019). Differences in antibody responses against Chelonid Alphaherpesvirus 5 (ChHV5) suggest differences in virus biology in ChHV5-seropositive green turtles from Hawaii and ChHV5-seropositive green turtles from Florida. Journal of Virology, 94(4):e01658-19.

Wambui, Joseph; Njage, Patrick Murigu Kamau; Tasara, Taurai; Buys, Elna Maria (2019). Meta-analysis and meta-regression indicate dynamic prevalence and moderators of foodborne pathogens in African indigenous fermented milk. Microorganisms, 7(11):563.

Harro, Janette M; Achermann, Yvonne; Freiberg, Jeffrey A; Allison, Devon L; Brao, Kristen J; Marinos, Dimitrius P; Sanjari, Salar; Leid, Jeff G; Shirtliff, Mark E (2019). Clearance of Staphylococcus aureus from In Vivo Models of Chronic Infection by Immunization Requires Both Planktonic and Biofilm Antigens. Infection and Immunity, 88(1):0.

Borel, Nicole; Horn, Matthias; Greub, Gilbert (2019). . Minutes of the closed meeting, 20 March 2019, Seattle, WA, USAInternational Committee on Systematics of Prokaryotes (ICSP) Subcommittee on the taxonomy of Chlamydiae. International Journal of Systematic and Evolutionary Microbiology, 69(11):3654-3656.

Zurfluh, Katrin; Albini, Sarah; Mattmann, Prisca; Kindle, Patrick; Nüesch-Inderbinen, Magdalena; Stephan, Roger; Vogler, Barbara Renate (2019). Antimicrobial resistant and extended‐spectrum β‐lactamase producing Escherichia coli in common wild bird species in Switzerland. MicrobiologyOpen, 8(11):e845.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Álvarez, Fernando; Ardizzone, Michele; De Sanctis, Giacomo; Fernandez Dumont, Antonio; Gennaro, Andrea; Gómez Ruiz, Jose Ángel; Lanzoni, Anna; Neri, Franco Maria; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos (2019). Assessment of genetically modified maize MON 87427 × MON 89034 × MIR162 × MON 87411 and subcombinations, for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2017‐144). EFSA Journal, 17(11):e05848.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Álvarez, Fernando; Ardizzone, Michele; De Sanctis, Giacomo; Devos, Yann; Dumont, Antonio Fernandez; Gennaro, Andrea; Gómez Ruiz, Jose Ángel; Lanzoni, Anna; Neri, Franco Maria; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos; Raffaello, Tommaso (2019). Assessment of genetically modified soybean MON 87751 × MON 87701 × MON 87708 × MON 89788 for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2016‐128). EFSA Journal, 17(11):5847.

Loaiza Puerta, Viviana; Six, Johan; Wittwer, Raphael; van der Heijden, Marcel; Pujol Pereira, Engil Isadora (2019). Comparable bacterial-mediated nitrogen supply and losses under organic reduced tillage and conventional intensive tillage. Soil Biology and Biochemistry, 95:103121.

Salcher, Michaela M; Schaefle, Daniel; Kaspar, Melissa; Neuenschwander, Stefan M; Ghai, Rohit (2019). Evolution in action: habitat transition from sediment to the pelagial leads to genome streamlining in Methylophilaceae. The ISME journal, 13(11):2764-2777.

Silva, Marisa O D; Pernthaler, Jakob (2019). Priming of microcystin degradation in carbon-amended membrane biofilm communities is promoted by oxygen-limited conditions. FEMS Microbiology Ecology, 95(11):157.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Álvarez, Fernando; Ardizzone, Michele; Lanzoni, Anna; Gómez Ruiz, Jose Ángel; De Sanctis, Giacomo; Fernández Dumont, Antonio; Gennaro, Andrea; Neri, Franco Maria (2019). Statement complementing the EFSA Scientific Opinion on application (EFSA‐GMO‐UK‐2006‐34) for authorisation of food and feed containing, consisting of and produced from genetically modified maize 3272. EFSA Journal, 17(11):e05844.

Münz, Christian (2019). Latency and lytic replication in Epstein-Barr virus-associated oncogenesis. Nature Reviews. Microbiology, 17(11):691-700.

Horlbog, Jule Anna; Stevens, Marc J A; Stephan, Roger; Guldimann, Claudia (2019). Global transcriptional response of three highly acid-tolerant field strains of listeria monocytogenes to HCl stress. Microorganisms, 7(10):455.

Papa, Guido; Venditti, Luca; Arnoldi, Francesca; Schraner, Elisabeth M; Potgieter, Christiaan; Borodavka, Alexander; Eichwald, Catherine; Burrone, Oscar R (2019). Recombinant rotaviruses rescued by reverse genetics reveal the role of NSP5 hyperphosphorylation in the assembly of viral factories. Journal of Virology, 94(1):e01110-e01119.

Rezzoagli, Chiara; Granato, Elisa T; Kümmerli, Rolf (2019). In-vivo microscopy reveals the impact of Pseudomonas aeruginosa social interactions on host colonization. The ISME journal, 13(10):2403-2414.

Schoster, Angelika; Kunz, T; Lauper, M; Graubner, C; Schmitt, S; Weese, J S (2019). Prevalence of Clostridium difficile and Clostridium perfringens in Swiss horses with and without gastrointestinal disease and microbiota composition in relation to Clostridium difficile shedding. Veterinary Microbiology, 239:108433.

Martínez, José L; Arnoldi, Francesca; Schraner, Elisabeth M; Eichwald, Catherine; Silva-Ayala, Daniela; Lee, Eunjoo; Sztul, Elizabeth; Burrone, Óscar R; López, Susana; Arias, Carlos F (2019). The guanine nucleotide exchange factor GBF1 participates in rotavirus replication. Journal of Virology, 93(19):October 2019 Volume 93 Issue 19 e01062-19.

Leong, Cheryl; Schmid, Bettina; Toi, Min Jet; Wang, Joyce; Irudayaswamy, Antony Sagayaraj; Goh, Joleen Peh Zhen; Bosshard, Philipp P; Glatz, Martin; Dawson, Thomas L (2019). Geographical and Ethnic Differences Influence Culturable Commensal Yeast Diversity on Healthy Skin. Frontiers in Microbiology, 10:1891.

Hurley, Daniel; Luque-Sastre, Laura; Parker, Craig T; Huynh, Steven; Eshwar, Athmanya K; Nguyen, Scott V; Andrews, Nicholas; Moura, Alexandra; Fox, Edward M; Jordan, Kieran; Lehner, Angelika; Stephan, Roger; Fanning, Séamus (2019). Whole-genome sequencing-based characterization of 100 Listeria monocytogenes isolates collected from food processing environments over a four-year period. mSphere, 4(4):e00252-19.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Álvarez, Fernando; Ardizzone, Michele; De Sanctis, Giacomo; Fernandez Dumont, Antonio; Gennaro, Andrea; Gómez Ruiz, Jose Ángel; Lanzoni, Anna; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos (2019). Assessment of genetically modified maize MON 87427 × MON 87460 × MON 89034 × MIR162 × NK603 and subcombinations, for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2016‐134). EFSA Journal, 17(8):e05774.

Borel, Nicole; Greub, Gilbert (2019). International Committee on Systematics of Prokaryotes (ICSP) Subcommittee on the taxonomy of Chlamydiae. Minutes of the closed meeting, 5 July 2018, Woudschoten, Zeist, The Netherlands. International Journal of Systematic and Evolutionary Microbiology, 69(8):2606-2608.

Grillová, Linda; Oppelt, Jan; Mikalová, Lenka; Novakova, Marketa; Giacani, Lorenzo; Niesnerová, Anežka; Noda, Angel A; Mechaly, Ariel E; Pospíšilová, Petra; Čejková, Darina; Grange, Philippe A; Dupin, Nicolas; Strnadel, Radim; Chen, Marcus; Denham, Ian; Arora, Natasha; Picardeau, Mathieu; Weston, Christopher; Forsyth, R Allyn; Šmajs, David (2019). Directly Sequenced Genomes of Contemporary Strains of Syphilis Reveal Recombination-Driven Diversity in Genes Encoding Predicted Surface-Exposed Antigens. Frontiers in Microbiology, 10:1691.

Schlaepfer, Erika; Fahrny, Audrey; Gruenbach, Maarja; Kuster, Stefan P; Simon, Viviana; Schreiber, Gideon; Speck, Roberto F (2019). Reply to Hasenkrug et al., "Different Biological Activities of Specific Interferon Alpha Subtypes". mSphere, 4(4):e00275.

Gimeno, Alejandro; Sohlberg, Elina; Pakula, Tiina; Limnell, Jenni; Keller, Beat; Laitila, Arja; Vogelgsang, Susanne (2019). TaqMan qPCR for Quantification of Clonostachys rosea Used as a Biological Control Agent Against Fusarium graminearum. Frontiers in Microbiology, 10:1627.

Kropac, Alexandra C; Eshwar, Athmanya K; Stephan, Roger; Tasara, Taurai (2019). New insights on the role of the pLMST6 plasmid in listeria monocytogenes biocide tolerance and virulence. Frontiers in Microbiology, 10:1538.

Banerjee, Samiran; Walder, Florian; Büchi, Lucie; Meyer, Marcel; Held, Alain Y; Gattinger, Andreas; Keller, Thomas; Charles, Raphael; van der Heijden, Marcel G A (2019). Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots. The ISME journal, 13(7):1722-1736.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Álvarez, Fernando; Ardizzone, Michele; De Sanctis, Giacomo; Fernandez Dumont, Antonio; Gennaro, Andrea; Gómez Ruiz, Jose Ángel; Lanzoni, Anna; Neri, Franco Maria; Paraskevopoulos, Konstantinos; Raffaello, Tommaso (2019). Assessment of genetically modified maize MON 87427 × MON 89034 × MIR162 × NK603 and subcombinations, for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2016‐131). EFSA Journal, 17(7):e05734.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michele; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Álvarez, Fernando; Fernandez Dumont, Antonio; Papadopoulou, Nikoletta; Ardizzone, Michele; Devos, Yann; Gennaro, Andrea; Ruiz Gómez, Jose Ángel; Lanzoni, Anna; Neri, Franco Maria; Paraskevopoulos, Konstantinos; Raffaello, Tommaso; De Sanctis, Giacomo (2019). Assessment of genetically modified soybean MON 87708 × MON 89788 × A5547‐127, for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2016‐135). EFSA Journal, 17(7):e05733.

Bulzu, Paul-Adrian; Andrei, Adrian-Stefan; Salcher, Michaela M; Mehrshad, Maliheh; Inoue, Keiichi; Kandori, Hideki; Beja, Oded; Ghai, Rohit; Banciu, Horia L (2019). Casting light on Asgardarchaeota metabolism in a sunlit microoxic niche. Nature Microbiology, 4(7):1129-1137.

Callieri, Cristiana; Slabakova, Violeta; Dzhembekova, Nina; Slabakova, Nataliya; Peneva, Elisaveta; Cabello-Yeves, Pedro J; Di Cesare, Andrea; Eckert, Ester M; Bertoni, Roberto; Corno, Gianluca; Salcher, Michaela M; Kamburska, Lyudmila; Bertoni, Filippo; Moncheva, Snejana (2019). The mesopelagic anoxic Black Sea as an unexpected habitat for Synechococcus challenges our understanding of global “deep red fluorescence”. The ISME journal, 13(7):1676-1687.

Rocha Martin, Vanesa Natalin; Lacroix, Christophe; Killer, Jiri; Bunesova, Vera; Voney, Evelyn; Braegger, Christian; Schwab, Clarissa (2019). Cutibacterium avidum is phylogenetically diverse with a subpopulation being adapted to the infant gut. Systematic and Applied Microbiology, 42(4):506-516.

Balaban, Nathalie Q; Helaine, Sophie; Lewis, Kim; Ackermann, Martin; Aldridge, Bree; Andersson, Dan I; Brynildsen, Mark P; Bumann, Dirk; Camilli, Andrew; Collins, James J; Dehio, Christoph; Fortune, Sarah; Ghigo, Jean-Marc; Hardt, Wolf-Dietrich; Harms, Alexander; Heinemann, Matthias; Hung, Deborah T; Jenal, Urs; Levin, Bruce R; Michiels, Jan; Storz, Gisela; Tan, Man-Wah; Tenson, Tanel; Van Melderen, Laurence; Zinkernagel, Annelies (2019). Definitions and guidelines for research on antibiotic persistence. Nature Reviews. Microbiology, 17(7):441-448.

Zeaki, Nikoleta; Johler, Sophia; Skandamis, Panagiotis N; Schelin, Jenny (2019). The role of regulatory mechanisms and environmental parameters in Staphylococcal food poisoning and resulting challenges to risk assessment. Frontiers in Microbiology, 10:1307.

Koliwer-Brandl, Hendrik; Knobloch, Paulina; Barisch, Caroline; Welin, Amanda; Hanna, Nabil; Soldati, Thierry; Hilbi, Hubert (2019). Distinct Mycobacterium marinum phosphatases determine pathogen vacuole phosphoinositide pattern, phagosome maturation, and escape to the cytosol. Cellular Microbiology, 21(6):e13008.

More, Simon J; Bampidis, Vasileios; Benford, Diane; Bragard, Claude; Halldorsson, Thorhallur I; Hernández‐Jerez, Antonio F; Hougaard Bennekou, Susanne; Koutsoumanis, Kostas P; Machera, Kyriaki; Naegeli, Hanspeter; Nielsen, Søren S; Schlatter, Josef R; Schrenk, Dieter; Silano, Vittorio; Turck, Dominique; Younes, Maged; Gundert‐Remy, Ursula; Kass, George E N; Kleiner, Juliane; Rossi, Anna Maria; Serafimova, Rositsa; Reilly, Linda; Wallace, Heather M (2019). Guidance on the use of the threshold of toxicological concern approach in food safety assessment. EFSA Journal, 17(6):e05708.

Onorini, Delia; Donati, Manuela; Marti, Hanna; Biondi, Roberta; Levi, Aurora; Nufer, Lisbeth; Prähauser, Barbara; Rigamonti, Sara; Vicari, Nadia; Borel, Nicole (2019). The influence of centrifugation and incubation temperatures on various veterinary and human chlamydial species. Veterinary Microbiology, 233:11-20.

Arnold, Isabelle C; Zhang, Xiaozhou; Artola-Boran, Mariela; Fallegger, Angela; Sander, Peter; Johansen, Pål; Müller, Anne (2019). BATF3-dependent dendritic cells drive both effector and regulatory T-cell responses in bacterially infected tissues. PLoS Pathogens, 15(6):e1007866.

Aguilar-Rodríguez, José; Fares, Mario A; Wagner, Andreas (2019). Chaperonin overproduction and metabolic erosion caused by mutation accumulation in Escherichia coli. FEMS Microbiology Letters, 366(10):fnz121.

Tall, Ben D; Gopinath, Gopal; Gangiredla, Jayanthi; Patel, Isha R; Fanning, Séamus; Lehner, Angelika (2019). Cronobacter Species. In: Doyle, MP; Diez-Gonzales, R; Hill, C. Food Microbiology: Fundamentals and Frontiers. Washington, 389-414.

Pham, Van Thanh; Chassard, Christophe; Rifa, Etienne; Braegger, Christian; Geirnaert, Annelies; Rocha Martin, Vanesa Natalin; Lacroix, Christophe (2019). Lactate Metabolism Is Strongly Modulated by Fecal Inoculum, pH, and Retention Time in PolyFermS Continuous Colonic Fermentation Models Mimicking Young Infant Proximal Colon. mSystems, 4(4):e00264.

Wambui, Joseph; Stephan, Roger (2019). Relevant aspects of Clostridium estertheticum as a specific spoilage organism of vacuum-packed meat. Microorganisms, 7(5):142.

Ghazaryan, Hrachuhi; Babloyan, Ara; Sarkissian, Ashot; Davtyan, Karapet; Berger, Christoph (2019). Respiratory syncytial and influenza virus detecting rapid tests in children younger than 5 years of age in Armenia. Journal of Infection in Developing Countries, 13(05.1):075S-080S.

Kuratli, Jasmin; Borel, Nicole (2019). Perspective: Water-Filtered Infrared-A-Radiation (wIRA) – novel treatment options for chlamydial infections? Frontiers in Microbiology, 10:1053.

Carroll, Laura M; Gaballa, Ahmed; Guldimann, Claudia; Sullivan, Genevieve; Henderson, Lory O; Wiedmann, Martin (2019). Identification of novel mobilized colistin resistance gene mcr-9 in a multidrug-resistant, colistin-susceptible salmonella enterica serotype typhimurium isolate. mBio, 10(3):e00853-19.

Uehlinger, Christoph (2019). Rez. A. Lykke (Hg.), Macht des Geldes - Macht der Bilder. Kolloquium zur Ikonographie auf Münzen im ostmediterranen Raum in hellenistisch-römischer Zeit (ADPV 41), 2013; A. Lykke, Reign and Religion in Palestine. The Use of Sacred Iconography in Jewish Coinage (ADPV 2015), 2015, in: Bibliotheca Orientalis 76 (3-4, 2019) 397-406. Bibliotheca orientalis, 76(3-4):397-406.

Muchaamba, Francis; Eshwar, Athmanya K; Stevens, Marc J A; von Ah, Ueli; Tasara, Taurai (2019). Variable carbon source utilization, stress resistance, and virulence profiles among Listeria monocytogenes strains responsible for Listeriosis outbreaks in Switzerland. Frontiers in Microbiology, 10:957.

Ziegler, Matthias; Kent, D; Stephan, Roger; Guldimann, Claudia (2019). Growth potential of Listeria monocytogenes in twelve different types of RTE salads: Impact of food matrix, storage temperature and storage time. International Journal of Food Microbiology, 296:83-92.

Islam, Md Mominul; Jelocnik, Martina; Anstey, Susan; Kaltenboeck, Bernhard; Borel, Nicole; Timms, Peter; Polkinghorne, Adam (2019). In vitro analysis of genetically distinct Chlamydia pecorum isolates reveals key growth differences in mammalian epithelial and immune cells. Veterinary Microbiology, 232:22-29.

Chatterjee, Bithi; Deng, Yun; Holler, Angelika; Núñez, Nicolás Gonzalo; Azzi, Tarik; Vanoaica, Liliana Danusia; Müller, Anne; Zdimerova, Hana; Antsiferova, Olga; Zbinden, Andrea; Capaul, Riccarda; Dreyer, Johannes H; Nadal, David; Becher, Burkhard; Robinson, Mark D; Stauss, Hans; Münz, Christian (2019). CD8+ T cells retain protective functions despite sustained inhibitory receptor expression during Epstein-Barr virus infection in vivo. PLoS Pathogens, 15(5):e1007748.

Hohl, Michael; Remm, Sille; Eskandarian, Haig A; Dal Molin, Michael; Arnold, Fabian M; Hürlimann, Lea M; Krügel, Andri; Fantner, Georg E; Sander, Peter; Seeger, Markus A (2019). Increased drug permeability of a stiffened mycobacterial outer membrane in cells lacking MFS transporter Rv1410 and lipoprotein LprG. Molecular Microbiology, 111(5):1263-1282.

Wagner, Karoline; Mancini, Stefano; Ritter, Claudia; Böttger, Erik C; Keller, Peter M (2019). Evaluation of the AID AmpC line probe assay for molecular detection of AmpC-producing Enterobacterales. Journal of Global Antimicrobial Resistance, 19:8-13.

Silva, Marisa O D; Desmond, Peter; Derlon, Nicolas; Morgenroth, Eberhard; Pernthaler, Jakob (2019). Source Community and Assembly Processes Affect the Efficiency of Microbial Microcystin Degradation on Drinking Water Filtration Membranes. Frontiers in Microbiology, 10:843.

Hetzel, Udo; Szirovicza, Leonóra; Smura, Teemu; Prähauser, Barbara; Vapalahti, Olli; Kipar, Anja; Hepojoki, Jussi (2019). Identification of a novel deltavirus in Boa Constrictors. mBio, 10(2):e00014-e00019.

Naegeli, Hanspeter; Bresson, Jean‐Louis; Dalmay, Tamas; Dewhurst, Ian Crawford; Epstein, Michelle M; Firbank, Leslie George; Guerche, Philippe; Hejatko, Jan; Moreno, Francisco Javier; Mullins, Ewen; Nogué, Fabien; Rostoks, Nils; Sánchez Serrano, Jose Juan; Savoini, Giovanni; Veromann, Eve; Veronesi, Fabio; Ardizzone, Michele; Álvarez, Fernando; Fernandez Dumont, Antonio; Gennaro, Andrea; Lanzoni, Anna; Neri, Franco Maria; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos; De Sanctis, Giacomo; Raffaello, Tommaso; Federici, Silvia; Koukoulanaki, Marina (2019). Assessment of genetically modified maize Bt11 × MIR162 × MIR604 × 1507 × 5307 × GA21 and subcombinations, for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐DE‐2011‐103). EFSA Journal, 17(4):e05635.

Sauvala, Mikaela; Laaksonen, Sauli; Laukkanen-Ninios, Riikka; Jalava, Katri; Stephan, Roger; Fredriksson-Ahomaa, Maria (2019). Microbial contamination of moose (Alces alces) and white-tailed deer (Odocoileus virginianus) carcasses harvested by hunters. Food Microbiology, 78:82-88.

Andrei, Adrian-Stefan; Salcher, Michaela M; Mehrshad, Maliheh; Rychtecký, Pavel; Znachor, Petr; Ghai, Rohit (2019). Niche-directed evolution modulates genome architecture in freshwater Planctomycetes. The ISME journal, 13(4):1056-1071.

Nicholson, Pamela; Furrer, Julia; Hässig, Michael; Strauss, Christian; Heller, Manfred; Braga-Lagache, Sophie; Frey, Joachim (2019). Production of neutralizing antibodies against the secreted Clostridium chauvoei toxin A (CctA) upon blackleg vaccination. Anaerobe, 56:78-87.

Bommana, Sankhya; Jelocnik, Martina; Borel, Nicole; Marsh, Ian; Carver, Scott; Polkinghorne, Adam (2019). The limitations of commercial serological assays for detection of chlamydial infections in Australian livestock. Journal of Medical Microbiology, 68(4):627-632.

Altobelli, Aleksandra; Bauer, Michael; Velez, Karelia; Cover, Timothy L; Müller, Anne (2019). Helicobacter pylori VacA Targets Myeloid Cells in the Gastric Lamina Propria To Promote Peripherally Induced Regulatory T-Cell Differentiation and Persistent Infection. mBio, 10(2):e00261.

Zurfluh, Katrin; Zogg, Anna Lena; Klumpp, Jochen; Schmitt, Sarah; Stephan, Roger; Nüesch-Inderbinen, Magdalena (2019). Complete nucleotide sequences of six blaCTX-M-1-encoding plasmids from Escherichia coli isolated from urinary tract and wound infections in dogs. Journal of Global Antimicrobial Resistance, 16:117-119.

More, Simon John; Bampidis, Vasileios; Benford, Diane; Bennekou, Susanne Hougaard; Bragard, Claude; Halldorsson, Thorhallur Ingi; Hernández‐Jerez, Antonio F; Koutsoumanis, Konstantinos; Naegeli, Hanspeter; Schlatter, Josef R; Silano, Vittorio; Nielsen, Søren Saxmose; Schrenk, Dieter; Turck, Dominique; Younes, Maged; Benfenati, Emilio; Castle, Laurence; Cedergreen, Nina; Hardy, Anthony; Laskowski, Ryszard; Leblanc, Jean Charles; Kortenkamp, Andreas; Ragas, Ad; Posthuma, Leo; Svendsen, Claus; Solecki, Roland; Testai, Emanuela; Dujardin, Bruno; Kass, George E N; et al (2019). Guidance on harmonised methodologies for human health, animal health and ecological risk assessment of combined exposure to multiple chemicals. EFSA Journal, 17(3):e05634.

Damania, Blossom; Münz, Christian (2019). Immunodeficiencies that predispose to pathologies by human oncogenic γ-herpesviruses. FEMS Microbiology Reviews, 43(2):181-192.

Kombrink, Anja; Tayyrov, Annageldi; Essig, Andreas; Stöckli, Martina; Micheller, Sebastian; Hintze, John; van Heuvel, Yasemin; Dürig, Natalia; Lin, Chia-Wei; Kallio, Pauli T; Aebi, Markus; Künzler, Markus (2019). Induction of antibacterial proteins and peptides in the coprophilous mushroom Coprinopsis cinerea in response to bacteria. The ISME journal, 13(3):588-602.

Vogler, Barbara Renate; Hartnack, Sonja; Ziegler, Ute; Lelli, Davide; Vögtlin, Andrea; Hoop, Richard; Albini, Sarah (2019). Resource-effective serosurveillance for the detection of West Nile Virus in Switzerland using abattoir samples of free-range laying hens. Vector Borne and Zoonotic Diseases, 19(3):222-224.

Hochstrasser, Ramon; Kessler, Aline; Sahr, Tobias; Simon, Sylvia; Schell, Ursula; Gomez-Valero, Laura; Buchrieser, Carmen; Hilbi, Hubert (2019). The pleotropic Legionella transcription factor LvbR links the Lqs and c-di-GMP regulatory networks to control biofilm architecture and virulence. Environmental Microbiology, 21(3):1035-1053.

Sparber, Florian; De Gregorio, Corinne; Steckholzer, Simone; Ferreira, Filipa M; Dolowschiak, Tamas; Ruchti, Fiorella; Kirchner, Florian R; Mertens, Sarah; Prinz, Immo; Joller, Nicole; Buch, Thorsten; Glatz, Martin; Sallusto, Federica; LeibundGut-Landmann, Salomé (2019). The skin commensal yeast malassezia triggers a type 17 response that coordinates anti-fungal immunity and exacerbates skin inflammation. Cell Host & Microbe, 25(3):389-403.e6.

Pitsch, Gianna; Bruni, Estelle Patricia; Forster, Dominik; Qu, Zhishuai; Sonntag, Bettina; Stoeck, Thorsten; Posch, Thomas (2019). Seasonality of Planktonic Freshwater Ciliates: Are Analyses Based on V9 Regions of the 18S rRNA Gene Correlated With Morphospecies Counts? Frontiers in Microbiology, 10:248.

Schlaepfer, Erika; Fahrny, Audrey; Gruenbach, Maarja; Kuster, Stefan P; Simon, Viviana; Schreiber, Gideon; Speck, Roberto F (2019). Dose-Dependent Differences in HIV Inhibition by Different Interferon Alpha Subtypes While Having Overall Similar Biologic Effects. mSphere, 4(1):e00637-18.

Buckley, Catherine M; Heath, Victoria L; Guého, Aurélie; Bosmani, Cristina; Knobloch, Paulina; Sikakana, Phumzile; Personnic, Nicolas; Dove, Stephen K; Michell, Robert H; Meier, Roger; Hilbi, Hubert; Soldati, Thierry; Insall, Robert H; King, Jason S (2019). PIKfyve/Fab1 is required for efficient V-ATPase and hydrolase delivery to phagosomes, phagosomal killing, and restriction of Legionella infection. PLoS Pathogens, 15(2):e1007551.

Romanens, Edwina; Freimüller Leischtfeld, Susette; Volland, Andrea; Stevens, Marc J A; Krähenmann, Ursina; Isele, Désirée; Fischer, Birgit; Meile, Leo; Miescher Schwenninger, Susanne (2019). Screening of lactic acid bacteria and yeast strains to select adapted anti-fungal co-cultures for cocoa bean fermentation. International Journal of Food Microbiology, 290:262-272.

Moura, Alexandra; Disson, Olivier; Lavina, Morgane; Thouvenot, Pierre; Huang, Lei; Leclercq, Alexandre; Fredriksson-Ahomaa, Maria; Eshwar, Athmanya K; Stephan, Roger; Lecuit, Marc (2019). Atypical hemolytic Listeria innocua isolates are virulent, albeit less than Listeria monocytogenes. Infection and Immunity, 87(4):e00758-18.

Murer, Anita; Rühl, Julia; Zbinden, Andrea; Capaul, Riccarda; Hammerschmidt, Wolfgang; Chijioke, Obinna; Münz, Christian (2019). MicroRNAs of Epstein-Barr Virus Attenuate T-Cell-Mediated Immune Control In Vivo. mBio, 10:e01941-18.

Spiewak, Helena L; Shastri, Sravanthi; Zhang, Lili; Schwager, Stephan; Eberl, Leo; Vergunst, Annette C; Thomas, Mark S (2019). Burkholderia cenocepacia utilizes a type VI secretion system for bacterial competition. MicrobiologyOpen:e774.

Rocha Martin, Vanesa Natalin; Schwab, Clarissa; Krych, Lukasz; Voney, Evelyn; Geirnaert, Annelies; Braegger, Christian; Lacroix, Christophe (2019). Colonization of Cutibacterium avidum during infant gut microbiota establishment. FEMS Microbiology Ecology, 95(1):fiy215.

Kindle, Patrick; Nüesch-Inderbinen, Magdalena; Cernela, Nicole; Stephan, Roger (2019). Detection, isolation, and characterization of Shiga Toxin-Producing Escherichia coli in flour. Journal of Food Protection, 82(1):164-167.

Toyofuku, Masanori; Nomura, Nobuhiko; Eberl, Leo (2019). Types and origins of bacterial membrane vesicles. Nature Reviews. Microbiology, 17(1):13-24.

Grabinger, Thomas; Glaus Garzon, Jesus Francisco; Hausmann, Martin; Geirnaert, Annelies; Lacroix, Christophe; Hennet, Thierry (2019). Alleviation of Intestinal Inflammation by Oral Supplementation With 2-Fucosyllactose in Mice. Frontiers in Microbiology, 10:1385.

Fernández, Noemí; Cabrera, Juan J; Varadarajan, Adithi R; Lutz, Stefanie; Ledermann, Raphael; Roschitzki, Bernd; Eberl, Leo; Bedmar, Eulogio J; Fischer, Hans-Martin; Pessi, Gabriella; Ahrens, Christian H; Mesa, Socorro (2019). An Integrated Systems Approach Unveils New Aspects of Microoxia-Mediated Regulation in Bradyrhizobium diazoefficiens. Frontiers in Microbiology, 10:924.

Bağcıoğlu, M; Fricker, M; Johler, Sophia; Ehling-Schulz, M (2019). Detection and identification of Bacillus cereus, Bacillus cytotoxicus, Bacillus thuringiensis, Bacillus mycoides and Bacillus weihenstephanensis via machine learning based FTIR Spectroscopy. Frontiers in Microbiology, 10:902.

Mansfeldt, Cresten; Achermann, Stefan; Men, Yujie; Walser, Jean-Claude; Villez, Kris; Joss, Adriano; Johnson, David R; Fenner, Kathrin (2019). Microbial residence time is a controlling parameter of the taxonomic composition and functional profile of microbial communities. The ISME journal, 13(6):1589-1601.

Allemann, Aurélie; Kraemer, Julia G; Korten, Insa; Ramsey, Kathryn; Casaulta, Carmen; SCILD Study Group; Wüthrich, Daniel; Ramette, Alban; Endimiani, Andrea; Latzin, Philipp; Hilty, Markus (2019). Nasal Resistome Development in Infants With Cystic Fibrosis in the First Year of Life. Frontiers in Microbiology, 10:212.

Poeker, Sophie A; Lacroix, Christophe; de Wouters, Tomas; Spalinger, Marianne R; Scharl, Michael; Geirnaert, Annelies (2019). Stepwise Development of an in vitro Continuous Fermentation Model for the Murine Caecal Microbiota. Frontiers in Microbiology, 10:1166.

Calderón, Claudia E; Tienda, Sandra; Heredia-Ponce, Zaira; Arrebola, Eva; Cárcamo-Oyarce, Gerardo; Eberl, Leo; Cazorla, Francisco M (2019). The Compound 2-Hexyl, 5-Propyl Resorcinol Has a Key Role in Biofilm Formation by the Biocontrol Rhizobacterium Pseudomonas chlororaphis PCL1606. Frontiers in Microbiology, 10:396.

Delecluse, Susanne; Tsai, Ming-Han; Shumilov, Anatoliy; Bencun, Maja; Arrow, Sebastian; Beshirova, Aisha; Cottignies-Calamarte, Andréa; Lasitschka, Felix; Bulut, Olcay Cem; Münz, Christian; Zeier, Martin; Behrends, Uta; Delecluse, Henri-Jacques (2019). The Epstein-Barr virus induces the expression of the LPAM-1 integrin in B-cells in vitro and in vivo. Journal of Virology, 93(5):e01618-18.

2018

Weber, Stephen; Steiner, Bernhard; Welin, Amanda; Hilbi, Hubert (2018). Legionella-Containing Vacuoles Capture PtdIns(4)-Rich Vesicles Derived from the Golgi Apparatus. mBio, 9(6):pii: e02420-18.

Bourras, Salim; Praz, Coraline R; Spanu, Pietro D; Keller, Beat (2018). Cereal powdery mildew effectors: a complex toolbox for an obligate pathogen. Current Opinion in Microbiology, 46:26-33.

Hartman, Kyle; van der Heijden, Marcel G A; Wittwer, Raphaël A; Banerjee, Samiran; Walser, Jean-Claude; Schlaeppi, Klaus (2018). Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming. Microbiome, 6(1):14.

Tackmann, Janko; Arora, Natasha; Schmidt, Thomas Sebastian Beedikt; Rodrigues, João Frederico Matias; von Mering, Christian (2018). Ecologically informed microbial biomarkers and accurate classification of mixed and unmixed samples in an extensive cross-study of human body sites. Microbiome, 6:192.

Peterhans, Sophie; Stevens, Marc J A; Nüesch-Inderbinen, Magdalena; Schmitt, Sarah; Stephan, Roger; Zurfluh, Katrin (2018). First report of a blaNDM-5-harbouring Escherichia coli ST167 isolated from a wound infection in a dog in Switzerland. Journal of Global Antimicrobial Resistance, 15:226-227.

Mehrshad, Maliheh; Salcher, Michaela M; Okazaki, Yusuke; Nakano, Shin-ichi; Šimek, Karel; Andrei, Adrian-Stefan; Ghai, Rohit (2018). Hidden in plain sight—highly abundant and diverse planktonic freshwater Chloroflexi. Microbiome, 6(1):176.

Sirová, Dagmara; Bárta, Jiří; Šimek, Karel; Posch, Thomas; Pech, Jiří; Stone, James; Borovec, Jakub; Adamec, Lubomír; Vrba, Jaroslav (2018). Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant. Microbiome, 6(1):225.

San Millan, Alvaro; Toll-Riera, Macarena; Qi, Qin; Betts, Alex; Hopkinson, Richard J; McCullagh, James; MacLean, R Craig (2018). Integrative analysis of fitness and metabolic effects of plasmids in Pseudomonas aeruginosa PAO1. The ISME journal, 12(12):3014-3024.

Granato, Elisa T; Ziegenhain, Christoph; Marvig, Rasmus L; Kümmerli, Rolf (2018). Low spatial structure and selection against secreted virulence factors attenuates pathogenicity in Pseudomonas aeruginosa. The ISME journal, 12(12):2907-2918.

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Gomes, Margarida C; Tasrini, Yara; Subramoni, Sujatha; Agnoli, Kirsty; Feliciano, Joana R; Eberl, Leo; Sokol, Pamela; O'Callaghan, David; Vergunst, Annette C (2018). The afc antifungal activity cluster, which is under tight regulatory control of ShvR, is essential for transition from intracellular persistence of Burkholderia cenocepacia to acute pro-inflammatory infection. PLoS Pathogens, 14(12):e1007473.

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Personnic, Nicolas; Striednig, Bianca; Hilbi, Hubert (2018). Legionella quorum sensing and its role in pathogen-host interactions. Current Opinion in Microbiology, 41:29-35.

Okazaki, Yusuke; Salcher, Michaela M; Callieri, Cristiana; Nakano, Shin-ichi (2018). The Broad Habitat Spectrum of the CL500-11 Lineage (Phylum Chloroflexi), a Dominant Bacterioplankton in Oxygenated Hypolimnia of Deep Freshwater Lakes. Frontiers in Microbiology, 9:2891.

Yakimovich, Artur; Witte, Robert; Andriasyan, Vardan; Georgi, Fanny; Greber, Urs F (2018). Label-Free Digital Holo-tomographic Microscopy Reveals Virus-Induced Cytopathic Effects in Live Cells. mSphere, 3(6):e00599-18.

Kuratli, Jasmin; Pesch, Theresa; Marti, Hanna; Leonard, Cory Ann; Blenn, Christian; Torgerson, Paul R; Borel, Nicole (2018). Water filtered infrared A and visible light (wIRA/VIS) irradiation reduces chlamydia trachomatis infectivity independent of targeted cytokine inhibition. Frontiers in Microbiology, 9:2757.

Hepojoki, Jussi; Hepojoki, Satu; Smura, Teemu; Szirovicza, Leonóra; Dervas, Eva; Prähauser, Barbara; Nufer, Lisbeth; Schraner, Elisabeth M; Vapalahti, Olli; Kipar, Anja; Hetzel, Udo (2018). Characterization of Haartman Institute snake virus-1 (HISV-1) and HISV-like viruses—The representatives of genus Hartmanivirus, family Arenaviridae. PLoS Pathogens, 14(11):e1007415.

Meyer Sauteur, Patrick M; de Bruijn, Adrianus C J M; Graça, Catarina; Tio-Gillen, Anne P; Estevão, Silvia C; Hoogenboezem, Theo; Hendriks, Rudi W; Berger, Christoph; Jacobs, Bart C; van Rossum, Annemarie M C; Huizinga, Ruth; Unger, Wendy W J (2018). Antibodies to protein but not glycolipid structures are important for host defense against. Infection and Immunity, 87(2):e00663-18.

García-Martín, Ana B; Perreten, Vincent; Rossano, Alexandra; Schmitt, Sarah; Nathues, Heiko; Zeeh, Friederike (2018). Predominance of a macrolide-lincosamide-resistant Brachyspira hyodysenteriae of sequence type 196 in Swiss pig herds. Veterinary Microbiology, 226:97-102.

Heini, Nicole; Stephan, Roger; Ehling-Schulz, Monika; Johler, Sophia (2018). Characterization of Bacillus cereus group isolates from powdered food products. International Journal of Food Microbiology, 283:59-64.

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Bardelli, Marco; Frontzek, Karl; Simonelli, Luca; Hornemann, Simone; Pedotti, Mattia; Mazzola, Federica; Carta, Manfredi; Eckhardt, Valeria; D’Antuono, Rocco; Virgilio, Tommaso; González, Santiago F; Aguzzi, Adriano; Varani, Luca (2018). A bispecific immunotweezer prevents soluble PrP oligomers and abolishes prion toxicity. PLoS Pathogens, 14(10):e1007335.

Inglin, Raffael C; Delbrück, Alessia I; Fässler, Benjamin; Siebenmann, Katharina E; Lacroix, Christophe; Stevens, Marc J A; Meile, Leo (2018). An approach to select Lactobacillus isolates as protective cultures for food fermentations. Journal of food safety, 38(5):e12483.

Alfreider, Albin; Grimus, Victoria; Luger, Martin; Ekblad, Anja; Salcher, Michaela M; Summerer, Monika (2018). Autotrophic carbon fixation strategies used by nitrifying prokaryotes in freshwater lakes. FEMS Microbiology Ecology, 94(10):fiy163.

Probst, Maraike; Gómez-Brandón, María; Bardelli, Tommaso; Egli, Markus; Insam, Heribert; Ascher-Jenull, Judith (2018). Bacterial communities of decaying Norway spruce follow distinct slope exposure and time-dependent trajectories. Environmental Microbiology, 20(10):3657-3670.

Butaitė, Elena; Kramer, Jos; Wyder, Stefan; Kümmerli, Rolf (2018). Environmental determinants of pyoverdine production, exploitation and competition in natural Pseudomonas communities. Environmental Microbiology, 20(10):3629-3642.

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Cernikova, Lenka; Faso, Carmen; Hehl, Adrian B (2018). Five facts about Giardia lamblia. PLoS Pathogens, 14(9):e1007250.

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Hornok, S; Baneth, G; Grima, A; Takács, N; Kontschán, J; Meli, Marina L; Suter, V; Salant, H; Farkas, R; Hofmann-Lehmann, Regina (2018). Molecular investigations of cat fleas (Ctenocephalides felis) provide the first evidence of Rickettsia felis in Malta and Candidatus Rickettsia senegalensis in Israel. New Microbes and New Infections, 25:3-6.

Wambui, Joseph; Tasara, Taurai; Kamau Njage, P M; Stephan, Roger (2018). Species distribution and antimicrobial profiles of Enterococcus spp. isolates from Kenyan small and medium enterprise slaughterhouses. Journal of Food Protection, 81(9):1445-1449.

Carrión, Víctor J; Cordovez, Viviane; Tyc, Olaf; Etalo, Desalegn W; de Bruijn, Irene; de Jager, Victor C L; Medema, Marnix H; Eberl, Leo; Raaijmakers, Jos M (2018). Involvement of Burkholderiaceae and sulfurous volatiles in disease-suppressive soils. The ISME journal, 12(9):2307-2321.

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Johler, Sophia; Kalbhenn, Eva M; Heini, Nicole; Brodmann, Peter; Gautsch, Sylvia; Bağcioğlu, Murat; Contzen, Matthias; Stephan, Roger; Ehling-Schulz, Monika (2018). Enterotoxin production of Bacillus thuringiensis isolates from biopesticides, foods, and outbreaks. Frontiers in Microbiology, 9:1915.

Ujmajuridze, Aleksandre; Chanishvili, Nina; Goderdzishvili, Marina; Leitner, Lorenz; Mehnert, Ulrich; Chkhotua, Archil; Kessler, Thomas M; Sybesma, Wilbert (2018). Adapted Bacteriophages for Treating Urinary Tract Infections. Frontiers in Microbiology, 9:1832.

Naegeli, Hanspeter; Birch, Andrew Nicholas; Casacuberta, Josep; De Schrijver, Adinda; Gralak, Mikołaj Antoni; Jones, Huw; Manachini, Barbara; Messéan, Antoine; Nielsen, Elsa Ebbesen; Nogué, Fabien; Robaglia, Christophe; Rostoks, Nils; Sweet, Jeremy; Tebbe, Christoph; Visioli, Francesco; Wal, Jean‐Michel; Álvarez, Fernando; Ardizzone, Michele; Fernandez Dumont, Antonio; Gómez Ruiz, José Ángel; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos (2018). Assessment of genetically modified soybean MON 87751 for food and feed uses under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2014‐121). EFSA Journal, 16(8):e05346.

Kessi, Janine; Hörtensteiner, Stefan (2018). Inhibition of bacteriochlorophyll biosynthesis in the purple phototrophic bacteria Rhodospirillumrubrum and Rhodobacter capsulatus grown in the presence of a toxic concentration of selenite. BMC Microbiology, 18(1):81.

Eshwar, Athmanya Konegadde; Wolfrum, Nina; Stephan, Roger; Fanning, Séamus; Lehner, Angelika (2018). Interaction of matrix metalloprotease-9 and Zpx in Cronobacter turicensis LMG 23827T mediated infections in the zebrafish model. Cellular Microbiology, 20(11):e12888.

Marti, Hanna; Borel, Nicole; Dean, Deborah; Leonard, Cory Ann (2018). Evaluating the antibiotic susceptibility of chlamydia – new approaches for in vitro assays. Frontiers in Microbiology, 9:1414.

Naegeli, Hanspeter; Birch, Andrew Nicholas; Casacuberta, Josep; De Schrijver, Adinda; Gralak, Mikołaj Antoni; Guerche, Philippe; Jones, Huw; Manachini, Barbara; Messéan, Antoine; Nielsen, Elsa Ebbesen; Nogué, Fabien; Robaglia, Christophe; Rostoks, Nils; Sweet, Jeremy; Tebbe, Christoph; Visioli, Francesco; Wal, Jean‐Michel; Ardizzone, Michele; Fernandez‐Dumont, Antonio; Gennaro, Andrea; Gómez Ruiz, José Ángel; Lanzoni, Anna; Neri, Franco Maria; Papadopoulou, Nikoletta; Paraskevopoulos, Konstantinos (2018). Assessment of genetically modified cotton GHB614 × T304‐40 × GHB119 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2014‐122). EFSA Journal, 16(7):e05349.

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Grujcic, Vesna; Nuy, Julia K; Salcher, Michaela M; Shabarova, Tanja; Kasalicky, Vojtech; Boenigk, Jens; Jensen, Manfred; Simek, Karel (2018). Cryptophyta as major bacterivores in freshwater summer plankton. The ISME journal, 12(7):1668-1681.

Nüesch-Inderbinen, Magdalena; Cernela, Nicole; Wüthrich, Daniel; Egli, Adrian; Stephan, Roger (2018). Genetic characterization of Shiga toxin producing Escherichia coli belonging to the emerging hybrid pathotype O80:H2 isolated from humans 2010–2017 in Switzerland. International Journal of Medical Microbiology : IJMM, 308(5):534-538.

Hardy, Anthony; Benford, Diane; Halldorsson, Thorhallur; Jeger, Michael John; Knutsen, Helle Katrine; More, Simon; Naegeli, Hanspeter; Noteborn, Hubert; Ockleford, Colin; Ricci, Antonia; Rychen, Guido; Schlatter, Josef R; Silano, Vittorio; Solecki, Roland; Turck, Dominique; Younes, Maged; Chaudhry, Qasim; Cubadda, Francesco; Gott, David; Oomen, Agnes; Weigel, Stefan; Karamitrou, Melpo; Schoonjans, Reinhilde; Mortensen, Alicja (2018). Guidance on risk assessment of the application of nanoscience and nanotechnologies in the food and feed chain: Part 1, human and animal health. EFSA Journal, 16(7):e05327.

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Bock, Christina; Salcher, Michaela M; Jensen, Manfred; Pandey, Ram Vinay; Boenigk, Jens (2018). Synchrony of Eukaryotic and Prokaryotic Planktonic Communities in Three Seasonally Sampled Austrian Lakes. Frontiers in Microbiology, 9:1290.

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Thurnheer, T; Belibasakis, G N (2018). Streptococcus oralis maintains homeostasis in oral biofilms by antagonizing the cariogenic pathogen Streptococcus mutans. Molecular Oral Microbiology, 33(3):234-239.

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Schuenemann, Verena J; Avanzi, Charlotte; Krause-Kyora, Ben; Seitz, Alexander; Herbig, Alexander; Inskip, Sarah; Bonazzi, Marion; Reiter, Ella; Urban, Christian; Dangvard Pedersen, Dorthe; Taylor, G Michael; Singh, Pushpendra; Stewart, Graham R; Velemínský, Petr; Likovsky, Jakub; Marcsik, Antónia; Molnár, Erika; Pálfi, György; Mariotti, Valentina; Riga, Alessandro; Belcastro, M Giovanna; Boldsen, Jesper L; Nebel, Almut; Mays, Simon; Donoghue, Helen D; Zakrzewski, Sonia; Benjak, Andrej; Nieselt, Kay; Cole, Stewart T; Krause, Johannes (2018). Ancient genomes reveal a high diversity of Mycobacterium leprae in medieval Europe. PLoS Pathogens, 14(5):e1006997.

Askari, Zeynab; Mas-Coma, Santiago; Bouwman, Abigail S; Boenke, Nicole; Stöllner, Thomas; Aali, Abolfazl; Rezaiian, Mostafa; Mowlavi, Gholamreza (2018). Fasciola hepatica eggs in paleofaeces of the Persian onager Equus hemionus onager, a donkey from Chehrabad archaeological site, dating back to the Sassanid Empire (224-651 AD), in ancient Iran. Infection, Genetics and Evolution, 62:233-243.

Naegeli, Hanspeter; Birch, Andrew Nicholas; Casacuberta, Josep; De Schrijver, Adinda; Gralak, Mikołaj Antoni; Guerche, Philippe; Jones, Huw; Manachini, Barbara; Messéan, Antoine; Nielsen, Elsa Ebbesen; Nogué, Fabien; Robaglia, Christophe; Rostoks, Nils; Sweet, Jeremy; Tebbe, Christoph; Visioli, Francesco; Wal, Jean‐Michel; Broll, Hermann; Gennaro, Andrea; Neri, Franco Maria; Paraskevopoulos, Konstantinos (2018). Assessment of genetically modified cotton GHB614 × LLCotton25 × MON 15985 for food and feed uses, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2011‐94). EFSA Journal, 16(4):e05213.

Wambui, Joseph; Lamuka, Peter; Karuri, Edward; Matofari, Joseph; Njage, P M K (2018). Microbial contamination level profiles attributed to contamination of beef carcasses, personnel, and equipment: case of small and medium enterprise slaughterhouses. Journal of Food Protection, 81(4):684-691.

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Novacco, Marilisa; Sugiarto, Sarah; Willi, Barbara; Baumann, Julia; Spiri, Andrea M; Oestmann, Angelina; Riond-Schade, Barbara; Boretti, Felicitas S; Naegeli, Hanspeter; Hofmann-Lehmann, Regina (2018). Consecutive antibiotic treatment with doxycycline and marbofloxacin clears bacteremia in Mycoplasma haemofelis-infected cats. Veterinary Microbiology, 217:112-120.

Murer, Anita; McHugh, Donal; Caduff, Nicole; Kalchschmidt, Jens; Barros, Mario; Zbinden, Andrea; Capaul, Riccarda; Niedobitek, Gerald; Allday, Martin; Chijioke, Obinna; Münz, Christian (2018). EBV persistence without its EBNA3A and 3C oncogenes in vivo. PLoS Pathogens, 14(4):e1007039.

Stichling, Nicole; Suomalainen, Maarit; Flatt, Justin W; Schmid, Markus; Pacesa, Martin; Hemmi, Silvio; Jungraithmayr, Wolfgang; Maler, Mareike D; Freudenberg, Marina A; Plückthun, Andreas; May, Tobias; Köster, Mario; Fejer, György; Greber, Urs F (2018). Lung macrophage scavenger receptor SR-A6 (MARCO) is an adenovirus type-specific virus entry receptor. PLoS Pathogens, 14(3):e1006914.

Losasso, Carmen; Eckert, Ester M; Mastrorilli, Eleonora; Villiger, Jorg; Mancin, Marzia; Patuzzi, Ilaria; Di Cesare, Andrea; Cibin, Veronica; Barrucci, Federica; Pernthaler, Jakob; Corno, Gianluca; Ricci, Antonia (2018). Assessing the Influence of Vegan, Vegetarian and Omnivore Oriented Westernized Dietary Styles on Human Gut Microbiota: A Cross Sectional Study. Frontiers in Microbiology:9:317.

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Morger, Damien; Zosel, Franziska; Bühlmann, Martin; Züger, Sara; Mittelviefhaus, Maximilian; Schuler, Benjamin; Luban, Jeremy; Grütter, Markus G (2018). The Three-Fold Axis of the HIV-1 Capsid Lattice Is the Species-Specific Binding Interface for TRIM5α. Journal of Virology, 92(5):e01541-17.

Zogg, Anna Lena; Zurfluh, Katrin; Schmitt, S; Nüesch-Inderbinen, Magdalena; Stephan, Roger (2018). Antimicrobial resistance, multilocus sequence types and virulence profiles of ESBL producing and non-ESBL producing uropathogenic Escherichia coli isolated from cats and dogs in Switzerland. Veterinary Microbiology, 216:79-84.

Naegeli, Hanspeter; Birch, Andrew Nicholas; Casacuberta, Josep; De Schrijver, Adinda; Gralak, Mikołaj Antoni; Guerche, Philippe; Jones, Huw; Manachini, Barbara; Messéan, Antoine; Nielsen, Elsa Ebbesen; Nogué, Fabien; Robaglia, Christophe; Rostoks, Nils; Sweet, Jeremy; Tebbe, Christoph; Visioli, Francesco; Wal, Jean‐Michel; Broll, Hermann; Fernandez Dumont, Antonio; Olaru, Irina (2018). Assessment of genetically modified maize NK603 x MON810 for renewal of authorisation under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐RX‐007). EFSA Journal, 16(2):e05163.

Ramirez, Kelly S; Knight, Christopher G; de Hollander, Mattias; Brearley, Francis Q; Constantinides, Bede; Cotton, Anne; et al; Crowther, Thomas W; Hartman, Kyle; van der Heijden, Marcel G A (2018). Detecting macroecological patterns in bacterial communities across independent studies of global soils. Nature Microbiology, 3(2):189-196.

Schwarz, Carsten; Hartl, Dominik; Eickmeier, Olaf; Hector, Andreas; Benden, Christian; Durieu, Isabelle; Sole, Amparo; Gartner, Silvia; Milla, Carlos E; Barry, Peter James (2018). Progress in Definition, Prevention and Treatment of Fungal Infections in Cystic Fibrosis. Mycopathologia, 183(1):21-32.

Kühnert, Denise; Kouyos, Roger; Shirreff, George; Pečerska, Jūlija; Scherrer, Alexandra U; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Günthard, Huldrych F; Stadler, Tanja; Bonhoeffer, Sebastian; Swiss HIV Cohort Study (2018). Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics. PLoS Pathogens, 14(2):e1006895.

Wagner, Karoline; Springer, Burkard; Imkamp, Frank; Opota, Onya; Greub, Gilbert; Keller, Peter M (2018). Detection of respiratory bacterial pathogens causing atypical pneumonia by multiplex Lightmix® RT-PCR. International Journal of Medical Microbiology : IJMM, 308(3):317-323.

Benford, Diane; Halldorsson, Thorhallur; Jeger, Michael John; Knutsen, Helle Katrine; More, Simon; Naegeli, Hanspeter; Noteborn, Hubert; Ockleford, Colin; Ricci, Antonia; Rychen, Guido; Schlatter, Josef R; Silano, Vittorio; Solecki, Roland; Turck, Dominique; Younes, Maged; Craig, Peter; Hart, Andrew; Von Goetz, Natalie; Koutsoumanis, Kostas; Mortensen, Alicja; Ossendorp, Bernadette; Martino, Laura; Merten, Caroline; Mosbach‐Schulz, Olaf; Hardy, Anthony (2018). Guidance on Uncertainty Analysis in Scientific Assessments. EFSA Journal, 16(1):e05123.

Benford, Diane; Halldorsson, Thorhallur; Jeger, Michael John; Knutsen, Helle Katrine; More, Simon; Naegeli, Hanspeter; Noteborn, Hubert; Ockleford, Colin; Ricci, Antonia; Rychen, Guido; Schlatter, Josef R; Silano, Vittorio; Solecki, Roland; Turck, Dominique; Younes, Maged; Craig, Peter; Hart, Andrew; Von Goetz, Natalie; Koutsoumanis, Kostas; Mortensen, Alicja; Ossendorp, Bernadette; Germini, Andrea; Martino, Laura; Merten, Caroline; Mosbach‐Schulz, Olaf; Smith, Anthony; Hardy, Anthony (2018). The principles and methods behind EFSA's Guidance on Uncertainty Analysis in Scientific Assessment. EFSA Journal, 16(1):e05122.

Reh, Lucia; Magnus, Carsten; Kadelka, Claus; Kühnert, Denise; Uhr, Therese; Weber, Jacqueline; Morris, Lynn; Moore, Penny L; Trkola, Alexandra (2018). Phenotypic deficits in the HIV-1 envelope are associated with the maturation of a V2-directed broadly neutralizing antibody lineage. PLoS Pathogens, 14:e1006825.

Sekaggya-Wiltshire, Christine; Lamorde, Mohammed; Kiragga, Agnes N; Dooley, Kelly E; Kamya, Moses R; Kambugu, Andrew; Fehr, Jan; Manabe, Yukari C; Castelnuovo, Barbara (2018). The utility of pharmacokinetic studies for the evaluation of exposure-response relationships for standard dose anti-tuberculosis drugs. Tuberculosis, 108:77-82.

Swart, A Leoni; Harrison, Christopher F; Eichinger, Ludwig; Steinert, Michael; Hilbi, Hubert (2018). Acanthamoeba and Dictyostelium as Cellular Models for Legionella Infection. Frontiers in Cellular and Infection Microbiology, 8:61.

Trejo-Cerro, Óscar; Eichwald, Catherine; Schraner, Elisabeth M; Silva-Ayala, Daniela; López, Susana; Arias, Carlos F (2018). Actin-dependent non-lytic rotavirus exit and infectious virus morphogenetic pathway in non-polarized cells. Journal of Virology, 92(6):e02076-17.

Bao, Kai; Bostanci, Nagihan; Thurnheer, Thomas; Grossmann, Jonas; Wolski, Witold E; Thay, Bernard; Belibasakis, Georgios N; Oscarsson, Jan (2018). Aggregatibacter actinomycetemcomitans H-NS promotes biofilm formation and alters protein dynamics of other species within a polymicrobial oral biofilm. npj Biofilms and Microbiomes, 4:12.

Brozy, Johannes; Schlaepfer, Erika; Mueller, Christina K S; Rochat, Mary-Aude; Rampini, Silvana K; Myburgh, Renier; Raum, Tobias; Kufer, Peter; Baeuerle, Patrick A; Muenz, Markus; Speck, Roberto F (2018). Antiviral Activity of HIV gp120-Targeting Bispecific T Cell Engager Antibody Constructs. Journal of Virology, 92(14):1-13.

Jans, C; Sarno, Eleonora; Collineau, L; Meile, L; Stärk, K D C; Stephan, Roger (2018). Consumer exposure to antimicrobial resistant bacteria from food at Swiss retail level. Frontiers in Microbiology, 9:362.

Asare, P T; Greppi, A; Stettler, M; Schwab, C; Stevens, Marc J A; Lacroix, C (2018). Decontamination of minimally-processed fresh lettuce using reuterin produced by cactobacillus reuteri. Frontiers in Microbiology, 9:1421.

Ramsauer, Anna Sophie; Kubacki, Jakub; Welle, Monika; Bachofen, Claudia; Fraefel, Cornel; Hoby, Stefan; Tobler, Kurt; Wenker, Christian (2018). Detection and Characterization of Okapi ( Okapia johnstoni )—specific Papillomavirus type 1 (OjPV1). Veterinary Microbiology, 223:113-118.

Giannini, P; Jermini, M; Leggeri, L; Nüesch-Inderbinen, Magdalena; Stephan, Roger (2018). Detection of Hepatitis E virus (HEV) RNA in raw cured sausages and raw cured sausages containing pig liver at retail stores in Switzerland. Journal of Food Protection, 81(1):43-45.

Seth-Smith, Helena M B; Imkamp, Frank; Tagini, Florian; Cuénod, Aline; Hömke, Rico; Jahn, Kathleen; Tschacher, Anne; Grendelmeier, Peter; Bättig, Veronika; Erb, Stefan; Reinhard, Miriam; Rütimann, Gottfried; Borrell, Sonia; Gagneux, Sebastien; Casanova, Carlo; Droz, Sara; Osthoff, Michael; Tamm, Michael; Nübel, Ulrich; Greub, Gilbert; Keller, Peter M; Egli, Adrian (2018). Discovery and Characterization of Mycobacterium basiliense sp. nov., a Nontuberculous Mycobacterium Isolated From Human Lungs. Frontiers in Microbiology, 9:3184.

Steiner, Bernhard; Weber, Stephen; Hilbi, Hubert (2018). Formation of the Legionella-containing vacuole: phosphoinositide conversion, GTPase modulation and ER dynamics. International Journal of Medical Microbiology : IJMM, 308(1):49-57.

Gopinath, G R; Chase, H R; Gangiredla, J; Eshwar, A; Jang, H; Patel, I; Negrete, F; Finkelstein, S; Park, E; Chung, T J; Yoo, Y J; Woo, J H; Lee, Y Y; Park, J; Choi, H; Jeong, S; Jun, S; Kim, M; Lee, C; Jeong, H; Fanning, S; Stephan, Roger; Iversen, C; Reich, F; Klein, G; Lehner, Angelika; Tall, B D (2018). Genomic characterization of malonate positive Cronobacter sakazakii serotype O:2, sequence type 64 strains, isolated from clinical, food, and environment samples. Gut Pathogens, 10:11.

Hornok, Sándor; Ágh, Nóra; Takács, Nóra; Kontschán, Jenő; Hofmann-Lehmann, Regina (2018). Haematospirillum and insect Wolbachia DNA in avian blood. Antonie van Leeuwenhoek, 111(3):479-483.

Tritten, Lucienne; Geary, Timothy G (2018). Helminth extracellular vesicles in host–parasite interactions. Current Opinion in Microbiology, 46:73-79.

Meir, Juliane; Hartmann, Elena; Eckstein, Marie-Therese; Guiducci, Eva; Kirchner, Florian; Rosenwald, Andreas; LeibundGut-Landmann, Salomé; Pérez, J Christian (2018). Identification of Candida albicans regulatory genes governing mucosal infection. Cellular Microbiology, 20(8):e12841.

Eichwald, Catherine; De Lorenzo, Giuditta; Schraner, Elisabeth M; Papa, Guido; Bollati, Michela; Swuec, Paolo; de Rosa, Matteo; Milani, Mario; Mastrangelo, Eloise; Ackermann, Mathias; Burrone, Oscar R; Arnoldi, Francesca (2018). Identification of a small molecule that compromises the structural integrity of viroplasms and rotavirus double-layered particles. Journal of Virology, 92(3):e01943-17.

Seijsing, Johan; Sobieraj, Anna M; Keller, Nadia; Shen, Yang; Zinkernagel, Annelies S; Loessner, Martin J; Schmelcher, Mathias (2018). Improved Biodistribution and Extended Serum Half-Life of a Bacteriophage Endolysin by Albumin Binding Domain Fusion. Frontiers in Microbiology, 9:2927.

Richter, Anja M; Fazli, Mustafa; Schmid, Nadine; Shilling, Rebecca; Suppiger, Angela; Givskov, Michael; Eberl, Leo; Tolker-Nielsen, Tim (2018). Key Players and Individualists of Cyclic-di-GMP Signaling in Burkholderia cenocepacia. Frontiers in Microbiology, 9:3286.

Sparber, Florian; Dolowschiak, Tamas; Mertens, Sarah; Lauener, Laura; Clausen, Björn E; Joller, Nicole; Stoitzner, Patrizia; Tussiwand, Roxane; LeibundGut-Landmann, Salomé (2018). Langerin+ DCs regulate innate IL-17 production in the oral mucosa during Candida albicans-mediated infection. PLoS Pathogens, 14(5):e1007069.

Zulauf, Marc; Zweifel, Claudio; Stephan, Roger (2018). Microbiological quality of raw milk sold directly from farms to consumers in Switzerland. Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 69:140-144.

Vogt, Cédric M; Armúa-Fernández, Maria Teresa; Tobler, Kurt; Hilbe, Monika; Aguilar, Claudio; Ackermann, Mathias; Deplazes, Peter; Eichwald, Catherine (2018). Oral application of recombinant Bacillus subtilis spores to dogs results in a humoral response against specific Echinococcus granulosus paramyosin and tropomyosin antigens. Infection and Immunity, 86(3):e00495-17.

Cieplik, Fabian; Steinwachs, Viktoria-Sophia; Muehler, Denise; Hiller, Karl-Anton; Thurnheer, Thomas; Belibasakis, Georgios N; Buchalla, Wolfgang; Maisch, Tim (2018). Phenalen-1-one-Mediated Antimicrobial Photodynamic Therapy: Antimicrobial Efficacy in a Periodontal Biofilm Model and Flow Cytometric Evaluation of Cytoplasmic Membrane Damage. Frontiers in Microbiology, 9:688.

Perraki, Artemis; Gronnier, Julien; Gouguet, Paul; Boudsocq, Marie; Deroubaix, Anne-Flore; Simon, Vincent; German-Retana, Sylvie; Legrand, Anthony; Habenstein, Birgit; Zipfel, Cyril; Bayer, Emmanuelle; Mongrand, Sébastien; Germain, Véronique (2018). REM1.3's phospho-status defines its plasma membrane nanodomain organization and activity in restricting PVX cell-to-cell movement. PLoS Pathogens, 14(11):e1007378.

Hicks Pries, Caitlin E; Sulman, Benjamin N; West, Corinna; O'Neill, Caitlin; Poppleton, Erik; Porras, Rachel C; Castanha, Cristina; Zhu, Biao; Wiedemeier, Daniel B; Torn, Margaret S (2018). Root litter decomposition slows with soil depth. Soil Biology and Biochemistry, 125:103-114.

Guariglia-Oropeza, Veronica; Hohl Orsi, R; Guldimann, Claudia; Wiedmann, M; Boor, K J (2018). The Listeria monocytogenes bile stimulon under acidic conditions is characterized by strain-specific patterns and the upregulation of motility, cell wall modification functions, and the PrfA regulon. Frontiers in Microbiology, 9:120.

Luthra, Sakshi; Rominski, Anna; Sander, Peter (2018). The Role of Antibiotic-Target-Modifying and Antibiotic-Modifying Enzymes in Drug Resistance. Frontiers in Microbiology, 9:2179.

Turkington, H L; Juozapaitis, M; Tsolakos, N; Corrales-Aguilar, E; Schwemmle, M; Hale, B G (2018). Unexpected Functional Divergence of Bat Influenza Virus NS1 Proteins. Journal of Virology, 92(5):e02097-17.

2017

Johler, Sophia (2017). A glimpse into the future - new therapeutic targets could transform the way we treat staphylococcal infections. Virulence, 8(8):1508-1510.

Maul, Julia-Tatjana; Maier, Philipp W; Anzengruber, Florian; Murer, Carla; Bosshard, Philipp P; Kerl, Katrin; French, Lars E; Navarini, Alexander A (2017). A case of tinea incognita and differential diagnosis of figurate erythema. Medical Mycology Case Reports, 18:8-11.

Seidl, Kati; Leemann, Michèle; Palheiros Marques, Miguel; Rachmühl, Carole; Leimer, Nadja; Andreoni, Federica; Achermann, Yvonne; Zinkernagel, Annelies S (2017). High level methicillin resistance correlates with reduced Staphylococcus aureus endothelial cell damage. International Journal of Medical Microbiology : IJMM, 307(1):11-20.

Goniotaki, Despoina; Lakkaraju, Asvin K K; Shrivastava, Amulya N; Bakirci, Pamela; Sorce, Silvia; Senatore, Assunta; Marpakwar, Rajlakshmi; Hornemann, Simone; Gasparini, Fabrizio; Triller, Antoine; Aguzzi, Adriano (2017). Inhibition of group-I metabotropic glutamate receptors protects against prion toxicity. PLoS Pathogens, 13(11):e1006733.

Higgins, Steven; Sanchez-Contreras, Maria; Gualdi, Stefano; Pinto-Carbó, Marta; Carlier, Aurélien; Eberl, Leo (2017). The Essential Genome of Burkholderia cenocepacia H111. Journal of Bacteriology, 199(22):e00260-17.

Lewandowska, Dagmara Wanda; Zagordi, Osvaldo; Geissberger, Fabienne-Desirée; Kufner, Verena; Schmutz, Stefan; Böni, Jürg; Metzner, Karin J; Trkola, Alexandra; Huber, Michael (2017). Correction to: Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples. Microbiome, 5(1):137.

Lopes, A M; Domingues, P; Zell, R; Hale, B G (2017). Structure-Guided Functional Annotation of the Influenza A Virus NS1 Protein Reveals Dynamic Evolution of the p85β-Binding Site during Circulation in Humans. Journal of Virology, 91(21):e01081-17.

Pitsch, Gianna; Adamec, Lubomír; Dirren, Sebastian; Nitsche, Frank; Šimek, Karel; Sirová, Dagmara; Posch, Thomas (2017). The green tetrahymena utriculariae n. sp. (ciliophora, oligohymenophorea) with its endosymbiotic algae (micractinium sp.), living in traps of a carnivorous aquatic plant. Journal of Eukaryotic Microbiology, 64(3):322-335.

Šimek, Karel; Pitsch, Gianna; Salcher, Michaela M; Sirová, Dagmara; Shabarova, Tanja; Adamec, Lubomír; Posch, Thomas (2017). Ecological Traits of the Algae-Bearing Tetrahymena utriculariae (Ciliophora) from Traps of the Aquatic Carnivorous Plant Utricularia reflexa. Journal of Eukaryotic Microbiology, 64(3):336-348.

Escoll, Pedro; Song, Ok-Ryul; Viana, Flávia; Steiner, Bernhard; Lagache, Thibault; Olivo-Marin, Jean-Christophe; Impens, Francis; Brodin, Priscille; Hilbi, Hubert; Buchrieser, Carmen (2017). Legionella pneumophila Modulates Mitochondrial Dynamics to Trigger Metabolic Repurposing of Infected Macrophages. Cell Host & Microbe, 22(3):302-316.e7.

Niewoehner, Ole; Jinek, Martin (2017). Specialized weaponry: how a type III-A CRISPR-cas system excels at combating phages. Cell Host & Microbe, 22(3):258-259.

Rissanen, Ilona; Stass, Robert; Zeltina, Antra; Li, Sai; Hepojoki, Jussi; Harlos, Karl; Gilbert, Robert J C; Huiskonen, Juha T; Bowden, Thomas A (2017). Structural transitions of the conserved and metastable hantaviral glycoprotein envelope. Journal of Virology, 91(21):e00378-17.

Basso, Virginia; Znaidi, Sadri; Lagage, Valentine; Cabral, Vitor; Schönherr, Franziska Annett; LeibundGut-Landmann, Salomé; d'Enfert, Christophe; Bachellier-Bassi, Sophie (2017). The two-component response regulator Skn7 belongs to a network of transcription factors regulating morphogenesis in Candida albicans and independently limits morphogenesis-induced ROS accumulation. Molecular Microbiology, 106(1):157-182.

Lewandowska, Dagmara W; Zagordi, Osvaldo; Geissberger, Fabienne-Desirée; Kufner, Verena; Schmutz, Stefan; Böni, Jürg; Metzner, Karin J; Trkola, Alexandra; Huber, Michael (2017). Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples. Microbiome, 5(1):94.

Sabaté Brescó, Marina; Harris, Llinos G; Thompson, Keith; Stanic, Barbara; Morgenstern, Mario; O'Mahony, Liam; Richards, R Geoff; Moriarty, T Fintan (2017). Pathogenic Mechanisms and Host Interactions in Staphylococcus epidermidis Device-Related Infection. Frontiers in Microbiology:8:1401.

Dirren, Sebastian; Pitsch, Gianna; Silva, Marisa O D; Posch, Thomas (2017). Grazing of Nuclearia thermophila and Nuclearia delicatula (Nucleariidae, Opisthokonta) on the toxic cyanobacterium Planktothrix rubescens. European Journal of Protistology, 60:87-101.

Maler, Mareike D; Nielsen, Peter J; Stichling, Nicole; Cohen, Idan; Ruzsics, Zsolt; Wood, Connor; Engelhard, Peggy; Suomalainen, Maarit; Gyory, Ildiko; Huber, Michael; Müller-Quernheim, Joachim; Schamel, Wolfgang W A; Gordon, Siamon; Jakob, Thilo; Martin, Stefan F; Jahnen-Dechent, Willi; Greber, Urs F; Freudenberg, Marina A; Fejer, György (2017). Key role of the scavenger receptor MARCO in mediating adenovirus infection and subsequent innate responses of macrophages. mBio, 8(4):e00670-17.

Fazli, Mustafa; Rybtke, Morten; Steiner, Elisabeth; Weidel, Elisabeth; Berthelsen, Jens; Groizeleau, Julie; Bin, Wu; Zhi, Boo Zhao; Yaming, Zhang; Kaever, Volkhard; Givskov, Michael; Hartmann, Rolf W; Eberl, Leo; Tolker-Nielsen, Tim (2017). Regulation of Burkholderia cenocepacia biofilm formation by RpoN and the c-di-GMP effector BerB. MicrobiologyOpen, 6(4):e00480.

Mika, Moana; Maurer, Josua; Korten, Insa; Allemann, Aurélie; Aebi, Suzanne; Brugger, Silvio D; Qi, Weihong; Frey, Urs; Latzin, Philipp; Hilty, Markus (2017). Influence of the pneumococcal conjugate vaccines on the temporal variation of pneumococcal carriage and the nasal microbiota in healthy infants: a longitudinal analysis of a case-control study. Microbiome:5:85.

McHugh, Donal; Caduff, Nicole; Barros, Mario Henrique M; Rämer, Patrick C; Raykova, Ana; Murer, Anita; Landtwing, Vanessa; Quast, Isaak; Styles, Christine T; Spohn, Michael; Fowotade, Adeola; Delecluse, Henri-Jacques; Papoudou-Bai, Alexandra; Lee, Yong-Moon; Kim, Jin-Man; Middeldorp, Jaap; Schulz, Thomas F; Cesarman, Ethel; Zbinden, Andrea; Capaul, Riccarda; White, Robert E; Allday, Martin J; Niedobitek, Gerald; Blackbourn, David J; Grundhoff, A; Münz, Christian (2017). Persistent KSHV Infection Increases EBV-Associated Tumor Formation In Vivo via Enhanced EBV Lytic Gene Expression. Cell Host & Microbe, 22(1):61-73.

Yakimovich, Artur; Huttunen, Moona; Zehnder, Benno; Coulter, Lesley J; Gould, Victoria; Schneider, Christoph; Kopf, Manfred; McInnes, Colin J; Greber, Urs F; Mercer, Jason (2017). Inhibition of Poxvirus Gene Expression and Genome Replication by Bisbenzimide Derivatives. Journal of Virology:00838-17.

Kok, Yik Lim; Ciuffi, Angela; Metzner, Karin J (2017). Unravelling HIV-1 latency, one cell at a time. Trends in Microbiology, 25(11):932-941.

Shaw, Megan L; Stertz, S (2017). Role of Host Genes in Influenza Virus Replication. In: Shaw, Megan L; Stertz, S. Current Topics in Microbiology and Immunology. Berlin, Heidelberg: Springer, 1-39.

Ostapchuk, Philomena; Suomalainen, Maarit; Zheng, Yueting; Boucke, Karin; Greber, Urs F; Hearing, Patrick (2017). The adenovirus major core protein VII is dispensable for virion assembly but is essential for lytic infection. PLoS Pathogens, 13(6):e1006455.

Baumgartner, Michael; Roffler, Stefan; Wicker, Thomas; Pernthaler, Jakob (2017). Letting go: bacterial genome reduction solves the dilemma of adapting to predation mortality in a substrate-restricted environment. The ISME journal, 11(10):2258-2266.

Toyofuku, Masanori; Morinaga, Kana; Hashimoto, Yohei; Uhl, Jenny; Shimamura, Hiroko; Inaba, Hideki; Schmitt-Kopplin, Philippe; Eberl, Leo; Nomura, Nobuhiko (2017). Membrane vesicle-mediated bacterial communication. The ISME journal, 11(6):1504-1509.

Pernthaler, Jakob (2017). Competition and niche separation of pelagic bacteria in freshwater habitats. Environmental Microbiology, 19(6):2133-2150.

Leonard, Cory Ann; Schoborg, Robert V; Borel, Nicole (2017). Productive and penicillin-stressed chlamydia pecorum infection induces nuclear factor kappa b activation and interleukin-6 secretion in vitro. Frontiers in Cellular and Infection Microbiology, 7:180.

Brandenberg, Oliver F; Magnus, Carsten; Rusert, Peter; Günthard, Huldrych F; Regoes, Roland Robert; Trkola, Alexandra (2017). Predicting HIV-1 transmission and antibody neutralization efficacy in vivo from stoichiometric parameters. PLoS Pathogens, 13(5):e1006313.

Schmid, Nadine; Suppiger, Angela; Steiner, Elisabeth; Pessi, Gabriella; Kaever, Volkhard; Fazli, Mustafa; Tolker-Nielsen, Tim; Jenal, Urs; Eberl, Leo (2017). High intracellular c-di-GMP levels antagonize quorum sensing and virulence gene expression in Burkholderia cenocepacia H111. Microbiology, 163(5):754-764.

Althaus, Denise; Jermini, Marco; Giannini, Petra; Martinetti, Gladys; Reinholz, Danuta; Nüesch-Inderbinen, Magdalena; Lehner, Angelika; Stephan, Roger (2017). Local outbreak of Listeria monocytogenes serotype 4b sequence type 6 due to contaminated meat pâté. Foodborne Pathogens and Disease, 14(4):219-222.

Buess, Simone; Nüesch-Inderbinen, Magdalena; Stephan, Roger; Zurfluh, Katrin (2017). Assessment of animals as a reservoir for colistin resistance: no MCR-1/MCR-2 producing Enterobacteriaceae detected in Swiss livestock. Journal of global antimicrobial resistance, 8:33-34.

Seth-Smith, Helena M B; Katharios, Pantelis; Dourala, Nancy; Mateos, José M; Fehr, Alexander G J; Nufer, Lisbeth; Ruetten, Maja; Guevara Soto, Maricruz; Vaughan, Lloyd (2017). Ca. Similichlamydia in epitheliocystis co-infection of gilthead seabream gills: unique morphological features of a deep branching chlamydial family. Frontiers in Microbiology, 8:508.

Sihto, Henna-Maria; Stephan, Roger; Engl, Christoph; Chen, J; Johler, Sophia (2017). Effect of food-related stress conditions and loss of agr and sigB on seb promoter activity in S. aureus. Food Microbiology, 65:205-212.

Arand, Michael; Marowsky, Anne (2017). Misclassification of PfEH1 and PfEH2 as epoxide hydrolases. mBio, 8(2):04-17.

Bloch, Susanne; Thurnheer, Thomas; Murakami, Yukitaka; Belibasakis, Georgios N; Schäffer, Christina (2017). Behavior of two Tannerella forsythia strains and cell surface mutants in multispecies oral biofilms. Molecular Oral Microbiology, 32(5):404-418.

Beauparlant, David; Rusert, Peter; Magnus, Carsten; Kadelka, Claus; Weber, Jacqueline; Uhr, Therese; Zagordi, Osvaldo; Oberle, Corinna; Duenas-Decamp, Maria J; Clapham, Paul R; Metzner, Karin J; Günthard, Huldrych F; Trkola, Alexandra (2017). Delineating CD4 dependency of HIV-1: Adaptation to infect low level CD4 expressing target cells widens cellular tropism but severely impacts on envelope functionality. PLoS Pathogens, 13(3):e1006255.

Shabarova, Tanja; Kasalický, Vojtěch; Šimek, Karel; Nedoma, Jiří; Znachor, Petr; Posch, Thomas; Pernthaler, Jakob; Salcher, Michaela M (2017). Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach. Environmental Microbiology, 19(3):1296-1309.

Feigelman, Rounak; Kahlert, Christian R; Baty, Florent; Rassouli, Frank; Kleiner, Rebekka L; Kohler, Philipp; Brutsche, Martin H; von Mering, Christian (2017). Sputum DNA sequencing in cystic fibrosis: non-invasive access to the lung microbiome and to pathogen details. Microbiome, 5(1):20.

Müller, Alexandra; Collineau, Lucy; Stephan, Roger; Müller, Andrea; Stärk, K D C (2017). Assessment of the risk of foodborne transmission and burden of hepatitis E in Switzerland. International Journal of Food Microbiology, 242:107-115.

Keller, Saskia; Hetzel, Udo; Sironen, T; Korzyukov, Y; Vapalahti, O; Kipar, Anja; Hepojoki, Jussi (2017). Co-Infecting reptarenaviruses can be vertically transmitted in Boa Constrictor. PLoS Pathogens, 13(1):e1006179.

Greber, Urs F; Bartenschlager, Ralf (2017). An expanded view of viruses. FEMS Microbiology Reviews, 41(1):1-4.

Carlier, Aurelien; Cnockaert, Margo; Fehr, Linda; Vandamme, Peter; Eberl, Leo (2017). Draft genome and description of Orrella dioscoreae gen. nov. sp. nov., a new species of Alcaligenaceae isolated from leaf acumens of Dioscorea sansibarensis. Systematic and Applied Microbiology, 40(1):11-21.

Rime, Thomas; Niklaus, Pascal A (2017). Spatio-temporal dynamics of soil CH4 uptake after application of N fertilizer with and without the nitrification inhibitor 3,4- dimethylpyrazole phosphate (DMPP). Soil Biology and Biochemistry, 104:218-225.

Emond Rheault, J G; Jeukens, J; Freschi, L; Kukavica-Ibrulj, I; Boyle, B; Dupont, M J; Stephan, Roger; Goodridge, Lawrence; Levesque, Roger C; et al (2017). A Syst-OMICS approach to ensuring food safety and reducing the economic burden of Salmonellosis. Frontiers in Microbiology, 8:996.

Schmidt, Thomas Sebastian Benedikt; Matias Rodrigues, João Frederico; von Mering, Christian (2017). A family of interaction-adjusted indices of community similarity. The ISME journal, 11(3):791-807.

Mossoun, A; Calvignac-Spencer, S; Anoh, A E; Pauly, M S; Driscoll, D A; Michel, A O; Grah Nazaire, L; Pfister, S; Sabwe, P; Thiesen, U; Vogler, Barbara Renate; Wiersma, L; Muyembe-Tamfum, J J; Karhemere, S; Akoua-Koffi, C; Couacy-Hymann, E; Fruth, B; Wittig, R; Leendertz, F; Schubert, G (2017). Bushmeat hunting and zoonotic transmission of Simian T-lymphotropic virus 1 in tropical West and Central Africa. Journal of Virology, 91(10):e02479-16.

Alfreider, Albin; Baumer, Andreas; Bogensperger, Teresa; Posch, Thomas; Salcher, Michaela M; Summerer, Monika (2017). CO2 assimilation strategies in stratified lakes: Diversity and distribution patterns of chemolithoautotrophs. Environmental Microbiology, 19(7):2754-2768.

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