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Joller, Nicole; Kuchroo, Vijay K (2017). Tim-3, Lag-3, and TIGIT. In: Yoshimura, Akihiko. Emerging Concepts Targeting Immune Checkpoints in Cancer and Autoimmunity. Cham: Springer, 127-156.

Bünter, Julia P; Seth-Smith, Helena M B; Rüegg, Simon R; Heikinheimo, Annamari; Borel, Nicole; Johler, Sophia (2017). Wild type agr-negative livestock-associated MRSA exhibits high adhesive capacity to human and porcine cells. Research in Microbiology, 168(2):130-138.

2016

Granato, Elisa T; Harrison, Freya; Kümmerli, Rolf (2016). Do bacterial “virulence factors” always increase virulence? A meta-analysis of pyoverdine production in Pseudomonas aeruginosa as a test case. Frontiers in Microbiology, 7:1952.

Joutsen, S; Eklund, K M; Laukkanen-Ninios, R; Stephan, Roger; Fredriksson-Ahomaa, Maria (2016). Sheep carrying pathogenic Yersinia enterocolitica bioserotypes 2/O:9 and 5/O:3 in the feces at slaughter. Veterinary Microbiology, 179:78-82.

Margot, Heike; Zwietering, M H; Joosten, Han; Stephan, Roger (2016). Determination of single cell lag times of Cronobacter spp. strains exposed to different stress conditions: impact on detection. International Journal of Food Microbiology, 236:161-166.

Walker, Andreas; Skibbe, Kathrin; Steinmann, Eike; Pfaender, Stephanie; Kuntzen, Thomas; Megger, Dominik A; Groten, Svenja; Sitek, Barbara; Lauer, Georg M; Kim, Arthur Y; Pietschmann, Thomas; Allen, Todd M; Timm, Joerg (2016). Distinct escape pathway by hepatitis C virus genotype 1a from a dominant CD8+T cell response by selection of altered epitope processing. Journal of Virology, 90(1):33-42.

Altmeier, Simon; Toska, Albulena; Sparber, Florian; Teijeira, Alvaro; Halin, Cornelia; LeibundGut-Landmann, Salomé (2016). IL-1 Coordinates the neutrophil response to C.Albicans in the oral mucosa. PLoS Pathogens, 12:9.

Harmer, Nicholas J; Chahwan, Richard (2016). Isotype switching: Mouse IgG3 constant region drives increased affinity for polysaccharide antigens. Virulence, 7(6):623-626.

Dolowschiak, Tamas; Mueller, Anna Angelika; Pisan, Lynn Joanna; Feigelman, Rounak; Felmy, Boas; Sellin, Mikael Erik; Namineni, Sukumar; Nguyen, Bidong Dinh; Wotzka, Sandra Yvonne; Heikenwalder, Mathias; von Mering, Christian; Mueller, Christoph; Hardt, Wolf-Dietrich (2016). IFN-γ Hinders Recovery from Mucosal Inflammation during Antibiotic Therapy for Salmonella Gut Infection. Cell Host & Microbe, 20(2):238-249.

Couto, Daniel; Niebergall, Roda; Liang, Xiangxiu; Bücherl, Christoph A; Sklenar, Jan; Macho, Alberto P; Ntoukakis, Vardis; Derbyshire, Paul; Altenbach, Denise; Maclean, Dan; Robatzek, Silke; Uhrig, Joachim; Menke, Frank; Zhou, Jian-Min; Zipfel, Cyril (2016). The Arabidopsis Protein Phosphatase PP2C38 Negatively Regulates the Central Immune Kinase BIK1. PLoS Pathogens, 12(8):e1005811.

Krtková, Jana; Thomas, Elizabeth B; Alas, Germain C M; Schraner, Elisabeth M; Behjatnia, Habib R; Hehl, Adrian B; Paredez, Alexander R (2016). Rac regulates giardia lamblia encystation by coordinating cyst wall protein trafficking and secretion. mBio, 7(4):e01003-e01016.

Scherrer, Simone; Borgström, Anna; Frei, Daniel; Wittenbrink, Max M (2016). First screening for Brachyspira hampsonii in Swiss pigs applying a new high resolution melting assay. Veterinary Microbiology, 193:17-21.

Birch, Andrew N E; Casacuberta, Josep; De Schrijver, Adinda; Gralak, Mikolaj Antoni; Guerche, Philippe; Jones, Huw; Manachini, Barbara; Messéan, Antoine; Naegeli, Hanspeter; Ebbesen Nielsen, Elsa; Nogué, Fabien; Robaglia, Christophe; Rostoks, Nils; Sweet, Jeremy; Tebbe, Christoph; Visioli, Francesco; Wal, Jean-Michel (2016). Scientific Opinion on an application by Syngenta (EFSA-GMO-DE-2011-99) for the placing on the market of maize Bt11 × 59122 × MIR604 × 1507 × GA21 and twenty subcombinations, which have not been authorised previously independently of their origin, for food and feed uses, import and processing under Regulation (EC) No 1829/2003. EFSA Journal, 14(8):e04567.

Green, Victoria A; Pelkmans, Lucas (2016). A Systems Survey of Progressive Host-Cell Reorganization during Rotavirus Infection. Cell Host & Microbe, 20(1):107-120.

Pires, João; Kuenzli, Esther; Kasraian, Sara; Tinguely, Regula; Furrer, Hansjakob; Hilty, Markus; Hatz, Christoph; Endimiani, Andrea (2016). Polyclonal Intestinal Colonization with Extended-Spectrum Cephalosporin-Resistant Enterobacteriaceae upon Traveling to India. Frontiers in Microbiology, 7:1069.

Pham, Van T; Lacroix, Christophe; Braegger, Christian P; Chassard, Christophe (2016). Early colonization of functional groups of microbes in the infant gut. Environmental Microbiology, 18(7):2246-2258.

Seth-Smith, Helena M B; Dourala, Nancy; Fehr, Alexander; Qi, Weihong; Katharios, Pantelis; Ruetten, Maja; Mateos, José M; Nufer, Lisbeth; Weilenmann, Roseline; Ziegler, Urs; Thomson, Nicholas R; Schlapbach, Ralph; Vaughan, Lloyd (2016). Emerging pathogens of gilthead seabream: characterisation and genomic analysis of novel intracellular β-proteobacteria. The ISME journal, 10(7):1791-1803.

Zumthor, Jon Paulin; Cernikova, Lenka; Rout, Samuel; Kaech, Andres; Faso, Carmen; Hehl, Adrian B (2016). Static clathrin assemblies at the peripheral vacuole-plasma membrane interface of the parasitic protozoan giardia lamblia. PLoS Pathogens, 12(7):e1005756.

Jost, Geraldine; Bloemberg, Guido V; Hombach, Michael (2016). Improved sensitivity for meticillin resistance detection in coagulase-negative staphylococci by moxalactam antibiotic discs or a cefoxitin investigation zone. Journal of Medical Microbiology, 65(6):566-568.

Bender, Ruben R; Muth, Anke; Schneider, Irene C; Friedel, Thorsten; Hartmann, Jessica; Plückthun, Andreas; Maisner, Andrea; Buchholz, Christian J (2016). Receptor-targeted nipah virus glycoproteins improve cell-type selective gene delivery and reveal a preference for membrane-proximal cell attachment. PLoS Pathogens, 12(6):e1005641.

Personnic, Nicolas; Bärlocher, Kevin; Finsel, Ivo; Hilbi, Hubert (2016). Subversion of retrograde trafficking by translocated pathogen effectors. Trends in Microbiology, 24(6):450-462.

Kamoun, Sophien; Zipfel, Cyril (2016). Fungal pathogenesis: Host modulation every which way. Nature Microbiology, 1(6):16075.

Margot, Heike; Tasara, Taurai; Zwietering, M H; Joosten, Han; Stephan, Roger (2016). Effects of different media on the enrichment of low numbers of Shiga toxin-producing Escherichia coli in mung bean sprouts and on the development of the sprout microbiome. International Journal of Food Microbiology, 232:26-34.

Yu, Xiao-Lin; Chan, Yuki; Zhuang, Long-Fei; Lai, Hong-Chang; Lang, Niklaus P; Lacap-Bugler, Donnabella C; Leung, W Keung; Watt, Rory M (2016). Distributions of Synergistetes in clinically-healthy and diseased periodontal and peri-implant niches. Microbial Pathogenesis, 94:90-103.

Bostanci, Nagihan; Thurnheer, T; Belibasakis, G N; Curtis, M A; Kilian, M; Marsh, P D; Kinane, D F; Mombelli, A (2016). Tribute. Molecular Oral Microbiology, 31(3):205-206.

Johler, Sophia; Stephan, Roger; Althaus, Denise; Ehling-Schulz, Monika; Grunert, Tom (2016). High-resolution subtyping of Staphylococcus aureus strains by means of Fourier-transform infrared spectroscopy. Systematic and Applied Microbiology, 39(3):189-194.

Greber, Urs F (2016). Virus and host mechanics support membrane penetration and cell entry. Journal of Virology, 90(8):3802-3805.

Bangerter, Patrick Daniel; Sidler, Xaver; Perreten, Vincent; Overesch, Gudrun (2016). Longitudinal study on the colonisation and transmission of methicillin-resistant Staphylococcus aureus in pig farms. Veterinary Microbiology, 183:125-134.

Naujoks, Jan; Tabeling, Christoph; Dill, Brian D; Hoffmann, Christine; Brown, Andrew S; Kunze, Mareike; Kempa, Stefan; Peter, Andrea; Mollenkopf, Hans-Joachim; Dorhoi, Anca; Kershaw, Olivia; Gruber, Achim D; Sander, Leif E; Witzenrath, Martin; Herold, Susanne; Nerlich, Andreas; Hocke, Andreas C; van Driel, Ian; Suttorp, Norbert; Bedoui, Sammy; Hilbi, Hubert; Trost, Matthias; Opitz, Bastian (2016). IFNs modify the proteome of legionella-containing vacuoles and restrict infection via IRG1-derived itaconic acid. PLoS Pathogens, 12(2):e1005408.

Willi, Barbara; Spiri, Andrea Monika; Meli, Marina L; Samman, Ayman; Hoffmann, Karolin; Sydler, Titus; Cattori, Valentino; Graf, Felix; Diserens, Kevin A; Padrutt, Isabelle; Nesina, Stefanie; Berger, Alice; Ruetten, Maja; Riond, Barbara; Hosie, Margaret J; Hofmann-Lehmann, Regina (2016). Molecular characterization and virus neutralization patterns of severe, non-epizootic forms of feline calicivirus infections resembling virulent systemic disease in cats in Switzerland and in Liechtenstein. Veterinary Microbiology, 182:202-212.

Yakimovich, Artur; Yakimovich, Yauhen; Schmid, Michael; Mercer, Jason; Sbalzarini, Ivo F; Greber, Urs F (2016). Infectio: a Generic Framework for Computational Simulation of Virus Transmission between Cells. mSphere, 1(1):e00078-15.

Mohanty, Soumitra; Dal Molin, Michael; Ganguli, Geetanjali; Padhi, Avinash; Jena, Prajna; Selchow, Petra; Sengupta, Srabasti; Meuli, Michael; Sander, Peter; Sonawane, Avinash (2016). Mycobacterium tuberculosis EsxO (Rv2346c) promotes bacillary survival by inducing oxidative stress mediated genomic instability in macrophages. Tuberculosis, 96:44-57.

Guevara Soto, Maricruz; Vidondo, Beatriz; Vaughan, Lloyd; Seth-Smith, Helena M B; Nufer, Lisbeth; Segner, Helmut; Rubin, J F; Schmidt-Posthaus, Heike (2016). The emergence of epitheliocystis in the upper Rhone region: evidence for Chlamydiae in wild and farmed salmonid populations. Archives of Microbiology, 198(4):315-324.

Fehr, Alexander G J; Ruetten, M; Seth-Smith, Helena M B; Nufer, Lisbeth; Voegtlin, A; Lehner, Angelika; Greub, Gilbert; Crosier, Philip S; Neuhauss, S C F; Vaughan, Lloyd (2016). A zebrafish model for Chlamydia infection with the obligate intracellular pathogen Waddlia chondrophila. Frontiers in Microbiology:7:1829.

Kohl, Alain; Pondeville, Emilie; Schnettler, Esther; Crisanti, Andrea; Supparo, Clelia; Christophides, George K; Kersey, Paul J; Maslen, Gareth L; Takken, Willem; Koenraadt, Constantianus J M; Oliva, Clelia F; Busquets, Nuria; Abad, F Xavier; Failloux, Anna-Bella; Levashina, Elena A; Wilson, Anthony J; Veronesi, Eva; Pichard, Maëlle; Arnaud Marsh, Sarah; Simard, Frédéric; Vernick, Kenneth D (2016). Advancing vector biology research: a community survey for future directions, research applications and infrastructure requirements. Pathogens and Global Health, 110(4-5):164-172.

Rout, Samuel; Zumthor, Jon Paulin; Schraner, Elisabeth M; Faso, Carmen; Hehl, Adrian B (2016). An interactome-centered protein discovery approach reveals novel components involved in mitosome function and homeostasis in giardia lamblia. PLoS Pathogens, 12(12):e1006036.

Sybesma, Wilbert; Zbinden, Reinhard; Chanishvili, Nino; Kutateladze, Mzia; Chkhotua, Archil; Ujmajuridze, Aleksandre; Mehnert, Ulrich; Kessler, Thomas M (2016). Bacteriophages as Potential Treatment for Urinary Tract Infections. Frontiers in Microbiology, 7:465.

Reimann, Regina R; Sonati, Tiziana; Hornemann, Simone; Herrmann, Uli S; Arand, Michael; Hawke, Simon; Aguzzi, Adriano (2016). Differential toxicity of antibodies to the prion protein. PLoS Pathogens, 12(1):e1005401.

Pinto-Carbó, Marta; Sieber, Simon; Dessein, Steven; Wicker, Thomas; Verstraete, Brecht; Gademann, Karl; Eberl, Leo; Carlier, Aurelien (2016). Evidence of horizontal gene transfer between obligate leaf nodule symbionts. The ISME journal, 10(9):2092-2105.

García, Patricia; Malorny, Burkhard; Rodicio, M Rosario; Stephan, Roger; Hächler, Herbert; Guerra, Beatriz; Lucarelli, Claudia (2016). Horizontal acquisition of a multidrug-resistance module (R-type ASSuT) is responsible for the monophasic phenotype in a widespread clone of Salmonella serovar 4,[5],12:i:. Frontiers in Microbiology, 7:680.

Meyer Sauteur, Patrick M; Unger, Wendy W J; Nadal, David; Berger, Christoph; Vink, Cornelis; van Rossum, Annemarie M C (2016). Infection with and carriage of Mycoplasma pneumoniae in children. Frontiers in Microbiology:7:329.

Pachathundikandi, Suneesh Kumar; Müller, Anne; Backert, Steffen (2016). Inflammasome activation by helicobacter pylori and its implications for persistence and immunity. In: Backert, Steffen. Inflammasome Signaling and Bacterial Infections. Germany: Springer, 117-131.

Schell, Ursula; Simon, Sylvia; Hilbi, Hubert (2016). Inflammasome recognition and regulation of the legionella flagellum. Current topics in microbiology and immunology, 397:161-181.

Thurnheer, T; Bostanci, N; Belibasakis, G N (2016). Microbial dynamics during conversion from supragingival to subgingival biofilms in an in vitro model. Molecular Oral Microbiology, 31(2):125-135.

Stopnisek, Nejc; Zühlke, Daniela; Carlier, Aurélien; Barberán, Albert; Fierer, Noah; Becher, Dörte; Riedel, Katharina; Eberl, Leo; Weisskopf, Laure (2016). Molecular mechanisms underlying the close association between soil Burkholderia and fungi. The ISME journal, 10(1):253-264.

Margot, Heike; Stephan, Roger; Tasara, Taurai (2016). Mungo bean sprout microbiome and changes associated with culture based enrichment protocols used in detection of Gram-negative foodborne pathogens. Microbiome, 4(1):48.

Arora, Natasha; Schuenemann, Verena J; Jäger, Günter; Peltzer, Alexander; Seitz, Alexander; Herbig, Alexander; Strouhal, Michal; Grillová, Linda; Sánchez-Busó, Leonor; Kühnert, Denise; Bos, Kirsten I; Davis, Leyla Rivero; Mikalová, Lenka; Bruisten, Sylvia; Komericki, Peter; French, Patrick; Grant, Paul R; Pando, María A; Vaulet, Lucía Gallo; Fermepin, Marcelo Rodríguez; Martinez, Antonio; Centurion Lara, Arturo; Giacani, Lorenzo; Norris, Steven J; Šmajs, David; Bosshard, Philipp P; González-Candelas, Fernando; Nieselt, Kay; Krause, Johannes; Bagheri, Homayoun C (2016). Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster. Nature Microbiology, 2:16245.

Häuslein, Ina; Manske, Christian; Goebel, Werner; Eisenreich, Wolfgang; Hilbi, Hubert (2016). Pathway analysis using (13) C-glycerol and other carbon tracers reveals a bipartite metabolism of Legionella pneumophila. Molecular Microbiology, 100(2):229-246.

Leonard, Cory Ann; Dewez, Frederic; Borel, Nicole (2016). Penicillin g-induced chlamydial stress response in a porcine strain of chlamydia pecorum. International Journal of Microbiology, 2016:3832917.

Dirren, Sebastian; Posch, Thomas (2016). Promiscuous and specific bacterial symbiont acquisition in the amoeboid genus Nuclearia (Opisthokonta). FEMS Microbiology Ecology, 92(8):fiw105.

Rampini, Silvana K; Zbinden, Andrea; Speck, Roberto F; Bloemberg, Guido V (2016). Similar efficacy of broad-range ITS PCR and conventional fungal culture for diagnosing fungal infections in non-immunocompromised patients. BMC Microbiology, 16(1):132.

Merz, Axel; Stephan, Roger; Johler, Sophia (2016). Staphylococcus aureus isolates from goat and sheep milk seem to be closely related and differ from isolates detected among bovine milk. Frontiers in Microbiology, 7:319.

Carlier, Aurelien; Fehr, Linda; Pinto-Carbó, Marta; Schäberle, Till; Reher, Raphael; Dessein, Steven; König, Gabriele; Eberl, Leo (2016). The genome analysis of Candidatus Burkholderia crenata reveals that secondary metabolism may be a key function of the Ardisia crenata leaf nodule symbiosis. Environmental Microbiology, 18(8):2507-2522.

Burgess, C M; Gianotti, A; Gruzdev, N; Holah, J; Knøchel, S; Lehner, A; Margas, E; Schmitz Esser, S; Sela (Saldinger), S; Tresse, O (2016). The response of foodborne pathogens to osmotic and desiccation stresses in the food chain. International Journal of Food Microbiology, 221:37-53.

Schell, Ursula; Simon, Sylvia; Sahr, Tobias; Hager, Dominik; Albers, Michael F; Kessler, Aline; Fahrnbauer, Felix; Trauner, Dirk; Hedberg, Christian; Buchrieser, Carmen; Hilbi, Hubert (2016). The α-hydroxyketone LAI-1 regulates motility, Lqs-dependent phosphorylation signaling and gene expression of Legionella pneumophila. Molecular Microbiology, 99(4):778-793.

Hornok, Sándor; Kartali, Kitti; Takács, Nóra; Hofmann-Lehmann, Regina (2016). Uneven seasonal distribution of Babesia canis and its two 18S rDNA genotypes in questing Dermacentor reticulatus ticks in urban habitats. Ticks and Tick-borne Diseases, 7(5):694-697.

Hunziker, Sibylle; Stephan, Roger (2016). Untersuchungen zur mikrobiologischen Qualität von erhitzten Lebensmitteln aus Bataillonsküchen der Schweizer Armee. Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 67(4):96-100.

2015

Birch, Andrew Nicholas; Casacuberta, Josep; De Schrijver, Adinda; Gathmann, Achim; Gralak, Mikolaj Antoni; Guerche, Philippe; Jones, Huw; Manachini, Barbara; Messéan, Antoine; Naegeli, Hanspeter; Ebbesen Nielsen, Elsa; Fabien Nogué, Fabien; Robaglia, Christophe; Rostoks, Nils; Sweet, Jeremy; Tebbe, Christoph; Visioli, Francesco; Wal, Jean-Michel (2015). Part C notification (reference C/NL/13/01) from Suntory Holdings Limited for the import, distribution and retailing of carnation SHD-27531-4 cut flowers with modified petal colour for ornamental use. EFSA Journal, 13(12):4358.

Tripathi, S; Pohl, M O; Zhou, Y; Rodriguez-Frandsen, A; Wang, G; Stein, D A; Moulton, H M; Che, J; Mulder, L C F; Yangüez, E; Andenmatten, D; Pache, L; Manicassamy, B; Albrecht, R A; Gonzalez, M G; Nguyen, Quy; Brass, A; Elledge, S; White, M; Shapira, S; Hacohen, N; Karlas, A; Meyer, T F; Shales, M; Gatorano, A; Johnson, J R; Jang, G; Johnson, T; Verschueren, E; Sanders, D; Krogan, N; Shaw, M; König, R; Stertz, S; García-Sastre, A; Chanda, S K; DeJesus, P (2015). Meta- and orthogonal integration of influenza "OMICs" data defines a role for UBR4 in virus budding. Cell Host & Microbe, 18(6):723-735.

Birch, Andrew Nicholas; Casacuberta, Josep; De Schrijver, Adinda; Gathmann, Achim; Gralak, Mikolaj Antoni; Guerche, Philippe; Jones, Huw; Manachini, Barbara; Messéan, Antoine; Naegeli, Hanspeter; Ebbesen Nielsen, Elsa; Nogué, Fabien; Robaglia, Christophe; Rostoks, Nils; Sweet, Jeremy; Tebbe, Christoph; Visioli, Francesco; Wal, Jean-Michel (2015). Scientific Opinion on an application by Syngenta (EFSA-GMO-DE-2009-66) for placing on the market of herbicide tolerant and insect resistant maize Bt11 × MIR162 × MIR604 × GA21 and subcombinations independently of their origin for food and feed uses, import and processing under Regulation (EC) No 1829/20031. EFSA Journal, 13(12):4297.

Vayssier-Taussat, Muriel; Kazimirova, Maria; Hubalek, Zdenek; Hornok, Sándor; Farkas, Robert; Cosson, Jean-François; Bonnet, Sarah; Vourch, Gwenaël; Gasqui, Patrick; Mihalca, Andrei Daniel; Plantard, Olivier; Silaghi, Cornelia; Cutler, Sally; Rizzoli, Annapaola (2015). Emerging horizons for tick-borne pathogens: from the 'one pathogen-one disease' vision to the pathobiome paradigm. Future Microbiology, 10:2033-2043.

Simon, Sylvia; Schell, Ursula; Heuer, Natalie; Hager, Dominik; Albers, Michael F; Matthias, Jan; Fahrnbauer, Felix; Trauner, Dirk; Eichinger, Ludwig; Hedberg, Christian; Hilbi, Hubert (2015). Inter-kingdom signaling by the Legionella Quorum Sensing Molecule LAI-1 modulates cell migration through an IQGAP1-Cdc42-ARHGEF9-dependent pathway. PLoS Pathogens, 11(12):e1005307.

Brandenberg, Oliver F; Magnus, Carsten; Regoes, Roland R; Trkola, Alexandra (2015). The HIV-1 entry process: A stoichiometric view. Trends in Microbiology, 23(12):763-774.

Möllerherm, Helene; Neumann, Ariane; Schilcher, Katrin; Blodkamp, Stefanie; Zeitouni, Nathalie E; Dersch, Petra; Lüthje, Petra; Naim, Hassan Y; Zinkernagel, Annelies S; von Köckritz-Blickwede, Maren (2015). Yersinia enterocolitica-mediated degradation of neutrophil extracellular traps (NETs). FEMS Microbiology Letters, 362(23):fnv192.

Gregorovic, Goran; Boulden, Elizabeth A; Bosshard, Rachel; Elgueta Karstegl, Claudio; Skalsky, Rebecca; Cullen, Bryan R; Gujer, Cornelia; Rämer, Patrick; Münz, Christian; Farrell, Paul J (2015). Epstein-barr viruses (EBVs) deficient in EBV-encoded RNAs have higher levels of latent membrane protein 2 RNA expression in lymphoblastoid cell lines and efficiently establish persistent infections in humanized mice. Journal of Virology, 89(22):11711-11714.

Kreibich, Saskia; Emmenlauer, Mario; Fredlund, Jennifer; Rämö, Pauli; Münz, Christian; Dehio, Christoph; Enninga, Jost; Hardt, Wolf-Dietrich (2015). Autophagy Proteins Promote Repair of Endosomal Membranes Damaged by the Salmonella Type Three Secretion System 1. Cell Host & Microbe, 18(5):527-537.

Koch, Katrin N; Müller, Anne (2015). Helicobacter pylori activates the TLR2/NLRP3/caspase-1/IL-18 axis to induce regulatory T-cells, establish persistent infection and promote tolerance to allergens. Gut Microbes, 6(6):382-387.

Krause, Sascha; Niklaus, Pascal A; Badwan Morcillo, Sara; Meima Franke, Marion; Lüke, Claudia; Reim, Andreas; Bodelier, Paul L E (2015). Compositional and functional stability of aerobic methane consuming communities in drained and rewetted peat meadows. FEMS Microbiology Ecology, 91(11):fiv119.

Hardy, Anthony; Benford, Diane; PJM Noteborn, Hubert; Halldorsson, Thorhallur Ingi; Josef Schlatter, Josef; Solecki, Roland Alfred; Jeger, Michael; Knutsen, Helle Katrine; Simon More, Simon; Mortensen, Alicja; Naegeli, Hanspeter; Ockleford, Colin; Ricci, Antonia; Rychen, Guido; Silano, Vittorio; Turck, Dominique (2015). Risk profile related to production and consumption of insects as food and feed. EFSA Journal, 13(10):4257.

Birch,, Andrew Nicholas; Casacuberta, Josep; De Schrijver, Adinda; Gathmann, Achim; Gralak, Mikolaj Antoni; Guerche, Philippe; Jones, Huw; Manachini, Barbara; Messéan, Antoine; Naegeli, Hanspeter; Ebbesen Nielsen, Elsa; Nogué, Fabien; Robaglia, Christophe; Rostoks, Nils; weet, Jeremy S; Tebbe, Christoph; Visioli, Francesco; Wal, Jean-Michel (2015). Scientific Opinion on an application (EFSA-GMO-NL-2010-85) for the placing on the market of MON 87769 × MON 89788 soybean, genetically modified to contain stearidonic acid and be tolerant to glyphosate for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 13(10):4256.

Turkington, H L; Juozapaitis, M; Kerry, P S; Aydillo, T; Ayllon, J; García-Sastre, A; Schwemmle, M; Hale, B G (2015). Novel bat influenza virus NS1 proteins bind double-stranded RNA and antagonize host innate immunity. Journal of Virology, 89(20):10696-10701.

Zhang, Naili; Wan, Shiqiang; Guo, Jixun; Han, Guodong; Gutknecht, Jessica; Schmid, Bernhard; Yu, Liang; Liu, Weixing; Bi, Jie; Wang, Zhen; Ma, Keping (2015). Precipitation modifies the effects of warming and nitrogen addition on soil microbial communities in northern Chinese grasslands. Soil Biology and Biochemistry, 89:12-23.

Birger, Ruthie B; Kouyos, Roger D; Cohen, Ted; Griffiths, Emily C; Huijben, Silvie; Mina, Michael; Volkova, Victoriya; Grenfell, Bryan; Metcalf, C Jessica E (2015). The potential impact of coinfection on antimicrobial chemotherapy and drug resistance. Trends in Microbiology, 23(9):537-44.

Belibasakis, G N; Kast, Jeannette I; Thurnheer, Thomas; Akdis, Cezmi A; Bostanci, Nagihan (2015). The expression of gingival epithelial junctions in response to subgingival biofilms. Virulence, 6(7):704-709.

Arpaia, Salvatore; et al (2015). Scientific Opinion on an application (EFSA-GMO-BE-2011-98) for the placing on the market of herbicide-tolerant genetically modified soybean FG72 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Bayer CropScience. EFSA Journal, 13(7):4167.

Arpaia, Salvatore; Birch, Andrew Nicholas Edmund; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, József; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Kaare Magne; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2015). Scientific Opinion on an application (Reference EFSA-GMO-NL-2011-100) for the placing on the market of the herbicide-tolerant, increased oleic acid genetically modified soybean MON 87705 × MON 89788 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 13(7):4178.

Arpaia, Salvatore; Birch, Andrew Nicholas Edmund; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, József; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2015). Scientific Opinion on an application (EFSA-GMO-NL-2010-80) for the placing on the market of herbicide-tolerant genetically modified maize NK603 × T25 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 13(7):4165.

Reh, Lucia; Magnus, Carsten; Schanz, Merle; Weber, Jacqueline; Uhr, Therese; Rusert, Peter; Trkola, Alexandra (2015). Capacity of broadly neutralizing antibodies to inhibit HIV-1 cell-cell transmission is strain- and epitope-dependent. PLoS Pathogens, 11(7):e1004966.

Luisoni, Stefania; Suomalainen, Maarit; Boucke, Karin; Tanner, Lukas B; Wenk, Markus R; Guan, Xue Li; Grzybek, Michał; Coskun, Ünal; Greber, Urs F (2015). Co-option of membrane wounding enables virus penetration into cells. Cell Host & Microbe, 18(1):75-85.

Keil, Daniel; Niklaus, Pascal A; von Riedmatten, Lars R; Boeddinghaus, Runa S; Dormann, Carsten F; Scherer-Lorenzen, Michael; Kandeler, Ellen; Marhan, Sven (2015). Effects of warming and drought on potential N2O emissions and denitrifying bacteria abundance in grasslands with different land-use. FEMS Microbiology Ecology, 91(7):fiv066.

Karbin, S; Hagedorn, F; Dawes, M A; Niklaus, P A (2015). Treeline soil warming does not affect soil methane fluxes and the spatial micro-distribution of methanotrophic bacteria. Soil Biology and Biochemistry, 86:164-171.

Arpaia, Salvatore; Birch, Andrew Nicholas Edmund; Chesson, Andrew; Patrick du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, József; Kleter, Gijs; Løvik, Martinus; Messéan, Antoine; Perry, Joe; Tebbe, Christoph; Naegeli, H (2015). Updating risk management recommendations to limit exposure of non-target Lepidoptera of conservation concern in protected habitats to Bt-maize pollen. EFSA Journal, 13(7):4127.

Sommerstein, R; Kohler, P; Wilhelm, M J; Kuster, S P; Sax, H (2015). Factors associated with methicillin-resistant coagulase-negative staphylococci as causing organisms in deep sternal wound infections after cardiac surgery. New Microbes and New Infections, 6:15-21.

Myburgh, Renier; Ivic, Sandra; Pepper, Michael S; Gers-Huber, Gustavo; Li, Duo; Audigé, Annette; Rochat, Mary-Aude; Jaquet, Vincent; Regenass, Stephan; Manz, Markus G; Salmon, Patrick; Krause, Karl-Heinz; Speck, Roberto F (2015). Lentivector knockdown of CCR5 in hematopoietic stem and progenitor cells confers functional and persistent HIV-1 resistance in humanized mice. Journal of Virology, 89(13):6761-6772.

König, R; Stertz, S (2015). Recent strategies and progress in identifying host factors involved in virus replication. Current Opinion in Microbiology, (26):79-88.

Arpaia, Salvatore; Nicholas, Andrew; Birch, Edmund; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, József; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2015). Scientific Opinion on application (EFSA-GMO-NL-2012-108) for the placing on the market of the herbicide-tolerant genetically modified soybean MON 87708 × MON 89788 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 13(6):4136.

Arpaia, Salvatore; Nicholas, Andrew; Birch, Edmund; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, József; Gijs Kleter, Gijs; Løvik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesná, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2015). Scientific Opinion on the application (EFSA-GMO-BE-2012-110) for the placing on the market of tissue-selective herbicide-tolerant genetically modified maize MON 87427 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 13(6):4130.

Edinger, T O; Pohl, M O; Yangüez, E; Stertz, S (2015). Cathepsin W is required for escape of influenza a virus from late endosomes. mBio, 6(3):e00297-15.

Fehr, Alexander; Eshwar, Athmanya K; Neuhauss, Stephan C F; Ruetten, Maja; Lehner, Angelika; Vaughan, Lloyd (2015). Evaluation of zebrafish as a model to study the pathogenesis of the opportunistic pathogen Cronobacter turicensis. Emerging Microbes and Infections, 4(5):e29.

Alves, Lisa; Khosravi, Mojtaba; Avila, Mislay; Ader-Ebert, Nadine; Bringolf, Fanny; Zurbriggen, Andreas; Vandevelde, Marc; Plattet, Philippe (2015). SLAM- and nectin-4-independent noncytolytic spread of canine distemper virus in astrocytes. Journal of Virology, 89(10):5724-5733.

Ader-Ebert, Nadine; Khosravi, Mojtaba; Herren, Michael; Avila, Mislay; Alves, Lisa; Bringolf, Fanny; Örvell, Claes; Langedijk, Johannes P; Zurbriggen, Andreas; Plemper, Richard K; Plattet, Philippe (2015). Sequential conformational changes in the morbillivirus attachment protein initiate the membrane fusion process. PLoS Pathogens, 11(5):e1004880.

Finsel, Ivo; Hilbi, Hubert (2015). Formation of a pathogen vacuole according to Legionella pneumophila: how to kill one bird with many stones. Cellular Microbiology, 17(7):935-950.

Lopez, Rodrigo; Hujoel, Philippe; Belibasakis, Georgios N (2015). On putative periodontal pathogens: an epidemiological perspective. Virulence, 6(3):249-257.

Harrison, Christopher F; Kicka, Sébastien; Kranjc, Agata; Finsel, Ivo; Chiriano, Gianpaolo; Ouertatani-Sakouhi, Hajer; Soldati, Thierry; Scapozza, Leonoardo; Hilbi, Hubert (2015). Adrenergic antagonists restrict replication of Legionella. Microbiology, 161(7):1392-1406.

Belibasakis, Georgios N; Mylonakis, Eleftherios (2015). Oral infections: clinical and biological perspectives. Virulence, 6(3):173-176.

Eichenberger, Ramon Marc; Deplazes, Peter; Mathis, Alexander (2015). Ticks on dogs and cats: a pet owner-based survey in a rural town in northeastern Switzerland. Ticks and Tick-borne Diseases, 6(3):267-271.

Schwessinger, Benjamin; Bahar, Ofir; Thomas, Nicolas; Holton, Nicolas; Nekrasov, Vladimir; Ruan, Deling; Canlas, Patrick E; Daudi, Arsalan; Petzold, Christopher J; Singan, Vasanth R; Kuo, Rita; Chovatia, Mansi; Daum, Christopher; Heazlewood, Joshua L; Zipfel, Cyril; Ronald, Pamela C (2015). Transgenic Expression of the Dicotyledonous Pattern Recognition Receptor EFR in Rice Leads to Ligand-Dependent Activation of Defense Responses. PLoS Pathogens, 11(3):e1004809.

Bostanci, Nagihan; Bao, Kai; Wahlander, Asa; Grossmann, Jonas; Thurnheer, Thomas; Belibasakis, Georgios N (2015). Secretome of gingival epithelium in response to subgingival biofilms. Molecular Oral Microbiology, 30(4):323-335.

Arpaia, Salvatore; Birch, Nicholas; Chesson, Andrew; du Jardin,, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesná, Jaroslava; Perry, Joe; Tebbe, Christoph (2015). Scientific Opinion on the annual post-market environmental monitoring (PMEM) report from Monsanto Europe S.A. on the cultivation of genetically modified maize MON 810 in 2013. EFSA Journal, 13(3):4039.

Metcalf, C J E; Birger, R B; Funk, S; Kouyos, R D; Lloyd-Smith, J O; Jansen, V A A (2015). Five challenges in evolution and infectious diseases. Epidemics, 10:40-44.

Wyrzucki, Arkadiusz; Bianchi, Matteo; Kohler, Ines; Steck, Marco; Hangartner, Lars (2015). Heterosubtypic antibodies to influenza A virus have limited activity against cell-bound virus but are not impaired by strain-specific serum antibodies. Journal of Virology, 89(6):3136-3144.

Yang, Wan-Lin; Kouyos, Roger D; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Scherrer, Alexandra U; Shilaih, Mohaned; Hinkley, Trevor; Petropoulos, Christos; Bonhoeffer, Sebastian; Günthard, Huldrych F (2015). Persistence of transmitted HIV-1 drug resistance mutations associated with fitness costs and viral genetic backgrounds. PLoS Pathogens, 11(3):e1004722.

Bethge, Tobias; Hachemi, Helen A; Manzetti, Julia; Gosert, Rainer; Schaffner, Walter; Hirsch, Hans H (2015). Sp1 sites in the noncoding control region of BK polyomavirus are key regulators of bidirectional viral early and late gene expression. Journal of Virology, 89(6):3396-3411.

Akcalı, Aliye; Bostanci, Nagihan; Özçaka, Özgun; Öztürk-Ceyhan, Banu; Gümüş, Pınar; Tervahartiala, Taina; Husu, Heidi; Buduneli, Nurcan; Sorsa, Timo; Belibasakis, Georgios N (2015). Elevated matrix metalloproteinase-8 in saliva and serum in polycystic ovary syndrome and association with gingival inflammation. Innate immunity, 21(6):619-625.

Charalampakis, Georgios; Belibasakis, Georgios N (2015). Microbiome of peri-implant infections: lessons from conventional, molecular and metagenomic analyses. Virulence, 6(3):183-187.

Zehnder, Matthias; Belibasakis, Georgios N (2015). On the dynamics of root canal infections - what we understand and what we don't. Virulence, 6(3):216-222.

Macho, Alberto P; Zipfel, Cyril (2015). Targeting of plant pattern recognition receptor-triggered immunity by bacterial type-III secretion system effectors. Current Opinion in Microbiology, 23:14-22.

Holton, Nicholas; Nekrasov, Vladimir; Ronald, Pamela C; Zipfel, Cyril (2015). The Phylogenetically-Related Pattern Recognition Receptors EFR and XA21 Recruit Similar Immune Signaling Components in Monocots and Dicots. PLoS Pathogens, 11(1):e1004602.

Avila, Mislay; Khosravi, Mojtaba; Alves, Lisa; Ader-Ebert, Nadine; Bringolf, Fanny; Zurbriggen, Andreas; Plemper, Richard K; Plattet, Philippe (2015). Canine distemper virus envelope protein interactions modulated by hydrophobic residues in the fusion protein globular head. Journal of Virology, 89(2):1445-1451.

Hepojoki, J; Kipar, A; Korzyukov, Y; Bell-Sakyi, L; Vapalahti, O; Hetzel, U (2015). Replication of Boid Inclusion Body Disease-Associated Arenaviruses Is Temperature Sensitive in both Boid and Mammalian Cells. Journal of Virology, 89(2):1119-1128.

Bao, Kai; Papadimitropoulos, Adam; Akgül, Baki; Belibasakis, Georgios N; Bostanci, Nagihan (2015). Establishment of an oral infection model resembling the periodontal pocket in a perfusion bioreactor system. Virulence, 6(3):265-273.

Brandenberg, Oliver F; Magnus, Carsten; Rusert, Peter; Regoes, Roland R; Trkola, Alexandra (2015). Different infectivity of HIV-1 strains is linked to number of envelope trimers required for entry. PLoS Pathogens, 11(1):e1004595.

Kanengoni, A; Chimonyo, M; Tasara, Taurai; Chimonyo, P; Chapwanya, A; Ndimba, B; Dzama, K (2015). A comparison of faecal microbial populations of South African Windsnyer-type indigenous pigs (SAWIP) and Large White x Landrace (LW x LR) crosses fed diets containing ensiled maize cobs. FEMS Microbiology Letters, 362(13):fnv100.

Schauer, K; Lehner, Angelika; Dietrich, R; Kleinsteuber, I; Canals, R; Zurfluh, Katrin; Weiner, K; Märtlbauer, E (2015). A cronobacter turicensis O1 antigen specific monoclonal antibody inhibits bacterial motility and entry into epithelial cells. Infection and Immunity, 83(3):876-887.

Zurfluh, Katrin; Power, Karen A; Klumpp, Jochen; Wang, J; Fanning, Séamus; Stephan, Roger (2015). A novel Tn3-like composite transposon harbouring blaVIM-1 in Klebsiella pneumoniae ssp. pneumoniae isolated from river water. Microbial Drug Resistance, 21(1):43-49.

Seyffert, Michael; Glauser, Daniel L; Tobler, Kurt; Georgiev, Oleg; Vogel, Rebecca; Vogt, Bernd; Agundez, Leticia; Linden, Michael; Büning, Hildegard; Ackermann, Mathias; Fraefel, Cornel (2015). Adeno-associated virus type 2 Rep68 can bind to consensus rep-binding sites on the herpes simplex virus 1 genome. Journal of Virology, 89(21):11150-11158.

Trautwein-Weidner, Kerstin; Gladiator, André; Kirchner, Florian R; Becattini, Simone; Rülicke, Thomas; Sallusto, Federica; LeibundGut-Landmann, Salomé (2015). Antigen-specific Th17 cells are primed by distinct and complementary dendritic cell subsets in oropharyngeal candidiasis. PLoS Pathogens, 11(10):e1005164.

Nüesch-Inderbinen, Magdalena; Zurfluh, Katrin; Peterhans, Sophie; Hächler, Herbert; Stephan, Roger (2015). Assessment of the prevalence of extended-spectrum β-Lactamase-producing Enterobacteriaceae in ready-to-eat salads, fresh-cut fruit, and sprouts from the Swiss market. Journal of Food Protection, 78(6):1178-1181.

Grant, Dawn M; Dagleish, Mark P; Bachofen, Claudia; Boag, Brian; Deane, David; Percival, Ann; Zadoks, Ruth N; Russell, George C (2015). Assessment of the rabbit as a wildlife reservoir of bovine viral diarrhea virus: serological analysis and generation of trans-placentally infected offspring. Frontiers in Microbiology:6:1000.

Takeuchi, Yayoi; Chaffron, Samuel; Salcher, Michaela M; Shimizu-Inatsugi, Rie; Kobayashi, Masaki J; Diway, Bibian; von Mering, Christian; Pernthaler, Jakob; Shimizu, Kentaro K (2015). Bacterial diversity and composition in the fluid of pitcher plants of the genus Nepenthes. Systematic and Applied Microbiology, 38(5):330-339.

Peng, Silvio; Weik, D; Stephan, Roger; Hummerjohann, J (2015). Behaviour of an Escherichia coli strain deleted in the salt stress response gene kdpA during production and ripening of a semi-hard cheese. Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 66(2):46-50.

Taylor-Brown, Alyce; Rüegg, Simon; Polkinghorne, Adam; Borel, Nicole (2015). Characterisation of Chlamydia pneumoniae and other novel chlamydial infections in captive snakes. Veterinary Microbiology, 178(1-2):88-93.

Sarno, Eleonora; Tasara, Taurai; Stephan, Roger; Zweifel, Claudio (2015). Characteristics of Listeria monocytogenes strains isolated from fecal samples of healthy slaughtered livestock. Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 66(4):113-116.

Nüesch-Inderbinen, Magdalena; Cernela, Nicole; Hächler, Herbert; Stephan, Roger (2015). Characteristics of Salmonella enterica serotype Schwarzengrund associated with human infections in Switzerland: 2006-2010. Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 66:56-60.

Wang, J; Stephan, Roger; Zurfluh, Katrin; Hächler, Herbert; Fanning, Séamus (2015). Characterization of the genetic environment of bla ESBL genes, integrons and toxin-antitoxin systems identified on large transferrable plasmids in multi-drug resistant Escherichia coli. Frontiers in Microbiology, 5:716.

Münz, Christian (2015). EBV Infection of Mice with Reconstituted Human Immune System Components. Current topics in microbiology and immunology, 391:407-423.

Coci, Manuela; Odermatt, Nina; Salcher, Michaela M; Pernthaler, Jakob; Corno, Gianluca (2015). Ecology and distribution of thaumarchaea in the deep hypolimnion of Lake Maggiore. Archaea, 2015:590434.

Li, Shuo; Plebanski, Magdalena; Smooker, Peter; Gowans, Eric J (2015). Editorial: why vaccines to HIV, HCV, and Malaria have so far failed—challenges to developing vaccines against immunoregulating pathogens. Frontiers in Microbiology, 6:1318.

Margot, Heike; Zwietering, Marcel; Joosten, Han; O'Mahony, E; Stephan, Roger (2015). Evaluation of different buffered peptone water (BPW) based enrichment broths for detection of Gram-negative foodborne pathogens from various food matrices. International Journal of Food Microbiology, 214:109-115.

Cernela, Nicole; Zweifel, Claudio; Stephan, Roger (2015). Evaluation of the CHROMagarTM STEC medium for the detection of Shiga toxin-producing Escherichia coli. Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 66(2):28-32.

Boesch, A; Cattori, V; Riond, Barbara; Willi, Barbara; Meli, Marina L; Rentsch, K M; Hosie, M J; Hofmann-Lehmann, Regina; Lutz, Hans (2015). Evaluation of the effect of short-term treatment with the integrase inhibitor raltegravir (Isentress™) on the course of progressive feline leukemia virus infection. Veterinary Microbiology, 175(2-4):167-178.

Neuenschwander, Stefan M; Salcher, Michaela M; Pernthaler, Jakob (2015). Fluorescence in situ hybridization and sequential catalyzed reporter deposition (2C-FISH) for the flow cytometric sorting of freshwater ultramicrobacteria. Frontiers in Microbiology, 6:247.

Parlange, Francis; Roffler, Stefan; Menardo, Fabrizio; Ben-David, Roi; Bourras, Salim; McNally, Kaitlin E; Oberhaensli, Simone; Stirnweis, Daniel; Buchmann, Gabriele; Wicker, Thomas; Keller, Beat (2015). Genetic and molecular characterization of a locus involved in avirulence of Blumeria graminis f. sp. tritici on wheat Pm3 resistance alleles. Fungal Genetics and Biology, 82:181-192.

Säle, Verena; Aguilera, Paula; Laczko, Endre; Mäder, Paul; Berner, Alfred; Zihlmann, Urs; van der Heijden, Marcel G A; Oehl, Fritz (2015). Impact of conservation tillage and organic farming on the diversity of arbuscular mycorrhizal fungi. Soil Biology and Biochemistry, 84:38-52.

Opota, Onya; Vanrompay, Daisy; Greub, Gilbert; Branley, James; Longbottom, David; Erard, Veronique; Jaton, Katia; Borel, Nicole (2015). Improving the molecular diagnosis of Chlamydia psittaci and Chlamydia abortus infection with a species-specific duplex real-time PCR. Journal of Medical Microbiology, 64(10):1174-1185.

Eshwar, Athmanya K; Tasara, Taurai; Stephan, Roger; Lehner, Angelika (2015). Influence of FkpA variants on survival and replication of Cronobacter spp. in human macrophages. Research in Microbiology, 166(3):186-195.

Lünemann, Anna; Rowe, Martin; Nadal, David (2015). Innate Immune Recognition of EBV. In: Münz, Christian. Epstein Barr Virus Volume 2 : One Herpes Virus: Many Diseases. Switzerland: Springer, 265-287.

Dubern, Jean-Frédéric; Cigana, Cristina; De Simone, Maura; Lazenby, James; Juhas, Mario; Schwager, Stephan; Bianconi, Irene; Döring, Gerd; Eberl, Leo; Williams, Paul; Bragonzi, Alessandra; Cámara, Miguel (2015). Integrated whole-genome screening forPseudomonas aeruginosavirulence genes using multiple disease models reveals that pathogenicity is host specific. Environmental Microbiology, 17(11):4379-4393.

Thurnheer, Thomas; Belibasakis, Georgios N (2015). Integration of non-oral bacteria into in vitro oral biofilms. Virulence, 6(3):258-264.

Salcher, Michaela M; Ewert, Claudia; Šimek, Karel; Kasalický, Vojtěch; Posch, Thomas (2015). Interspecific competition and protistan grazing affect the coexistence of freshwater betaproteobacterial strains. FEMS Microbiology Ecology, 92(2):fiv156.

Schmidt, Thomas S B; Matias Rodrigues, João F; von Mering, Christian (2015). Limits to robustness and reproducibility in the demarcation of operational taxonomic units. Environmental Microbiology, 17(5):1689-1706.

Birger, Ruthie; Kouyos, Roger; Dushoff, Jonathan; Grenfell, Bryan (2015). Modeling the effect of HIV coinfection on clearance and sustained virologic response during treatment for hepatitis C virus. Epidemics, 12:1-10.

Obiegala, Anna; Pfeffer, Martin; Pfister, Kurt; Karnath, Carolin; Silaghi, Cornelia (2015). Molecular examinations of Babesia microti in rodents and rodent-attached ticks from urban and sylvatic habitats in Germany. Ticks and Tick-borne Diseases, 6(4):445-449.

Bender, S Franz; Conen, Franz; van der Heijden, Marcel G A (2015). Mycorrhizal effects on nutrient cycling, nutrient leaching and N2O production in experimental grassland. Soil Biology and Biochemistry, 80:283-292.

Jurankova, Jana; Basso, Walter; Neumayerova, Helena; Frencova, Anita; Balaz, Vojtech; Deplazes, Peter; Koudela, Bretislav (2015). Predilection sites for Toxoplasma gondii in sheep tissues revealed by magnetic capture and real-time PCR detection. Food Microbiology, 52:150-153.

Münz, Christian (2015). Preface. Current topics in microbiology and immunology, 390(Pt 1):v-vi.

Nüesch-Inderbinen, Magdalena T; Funk, J; Cernela, Nicole; Tasara, Taurai; Klumpp, Jochen; Schmidt, Herbert; Stephan, Roger (2015). Prevalence of Subtilase cytotoxin-encoding subAB variants among Shiga toxin-producing Escherichia coli strains isolated from wild ruminants and sheep differs from that of cattle and pigs and is predominated by the new allelic variant subAB2-2. International Journal of Medical Microbiology : IJMM, 305(1):124-128.

Herrmann, Uli S; Sonati, Tiziana; Falsig, Jeppe; Reimann, Regina R; Dametto, Paolo; O'Connor, Tracy; Li, Bei; Lau, Agnes; Hornemann, Simone; Sorce, Silvia; Wagner, Uli; Sanoudou, Despina; Aguzzi, Adriano (2015). Prion infections and anti-PrP antibodies trigger converging neurotoxic pathways. PLoS Pathogens, 11(2):e1004662.

Herweg, Jo-Ana; Hansmeier, Nicole; Otto, Andreas; Geffken, Anna C; Subbarayal, Prema; Prusty, Bhupesh K; Becher, Dörte; Hensel, Michael; Schaible, Ulrich E; Rudel, Thomas; Hilbi, Hubert (2015). Purification and proteomics of pathogen-modified vacuoles and membranes. Frontiers in Cellular and Infection Microbiology, 5:48.

Nüesch-Inderbinen, Magdalena; Cernela, N; Althaus, Denise; Hächler, Herbert; Stephan, Roger (2015). Salmonella enterica serovar Szentes, a rare serotype causing a 9-month outbreak in 2013 and 2014 in Switzerland. Foodborne Pathogens and Disease, 12(11):887-890.

Costanzo, N; Sarno, Eleonora; Peretti, V; Ciambrone, L; Casalinuovo, F; Santoro, A (2015). Serological and molecular investigation of swine hepatitis E virus in pigs raised in Southern Italy. Journal of Food Protection, 78(11):2099-2102.

Lanz, C; Yangüez, E; Andenmatten, D; Stertz, S (2015). Swine IFITM proteins potently inhibit influenza A virus replication. Journal of Virology, 89(1):863-869.

Klausmann, Stefanie; Sydler, Titus; Summerfield, Artur; Lewis, Fraser I; Weilenmann, Roseline; Sidler, Xaver; Brugnera, Enrico (2015). T-cell reprogramming through targeted CD4-coreceptor and T-cell receptor expression on maturing thymocytes by latent Circoviridae family member porcine circovirus type 2 cell infections in the thymus. Emerging Microbes and Infections, 4(3):e15.

Sihto, Henna-Maria; Tasara, Taurai; Stephan, Roger; Johler, Sophia (2015). Temporal expression of the staphylococcal enterotoxin D gene under NaCl stress conditions encountered during food production and preservation. FEMS Microbiology Letters, 362(6):fnv024.

Guyer, Anouk; De Vrieze, Mout; Bönisch, Denise; Gloor, Ramona; Musa, Tomke; Bodenhausen, Natacha; Bailly, Aurélien; Weisskopf, Laure (2015). The anti-phytophthora effect of selected potato-associated pseudomonas strains: from the laboratory to the field. Frontiers in Microbiology, 6:1309.

Salcher, Michaela M; Neuenschwander, Stefan M; Posch, Thomas; Pernthaler, Jakob (2015). The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign. The ISME journal, 9(11):2442-2453.

Zbinden, A; Bostanci, N; Belibasakis, G N (2015). The novel species Streptococcus tigurinus and its association with oral infection. Virulence, 6(3):177-182.

Hagedorn, Frank; Bruderhofer, Nadia; Ferrari, Adele; Niklaus, Pascal A (2015). Tracking litter-derived dissolved organic matter along a soil chronosequence using 14C imaging: Biodegradation, physico-chemical retention or preferential flow? Soil Biology and Biochemistry, 88:333-343.

De Vrieze, Mout; Pandey, Piyush; Bucheli, Thomas D; Varadarajan, Adithi R; Ahrens, Christian H; Weisskopf, Laure; Bailly, Aurélien (2015). Volatile organic compounds from native potato-associated pseudomonas as potential anti-oomycete agents. Frontiers in Microbiology, 6:1295.

2014

Arpaia, Salvatore; Birch, Andrew Nicholas Edmund; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Lieve, Herman; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, József; Kleter, Gijs; Løvik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesná, Jaroslava; Perry, Joe; Rostoks, Nils (2014). Scientific Opinion on a notification (reference C/NL/09/02) for the placing on the market of the genetically modified carnation IFD-26407-2 with a modified colour, for import of cut flowers for ornamental use, under Part C of Directive 2001/18/EC from Florigene. EFSA Journal, 12(12):3935.

Arpaia, Salvatore; Birch, Andrew Nicholas Edmund; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Lieve, Herman; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, József; Kleter, Gijs; Løvik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesná, Jaroslava; Perry, Joe; Rostoks, Nils (2014). Scientific Opinion on a notification (reference C/NL/09/01) for the placing on the market of the genetically modified carnation IFD-25958-3 with a modified colour, for import of cut flowers for ornamental use, under Part C of Directive 2001/18/EC from Florigene. EFSA Journal, 12(12):3934.

Dudnik, Alexey; Dudler, Robert (2014). Virulence determinants of Pseudomonas syringae strains isolated from grasses in the context of a small type III effector repertoire. BMC Microbiology, 14:304.

Egli, Adrian; Santer, Deanna M; O'Shea, Daire; Barakat, Khaled; Syedbasha, Mohammedyaseen; Vollmer, Madeleine; Baluch, Aliyah; Bhat, Rakesh; Groenendyk, Jody; Joyce, Michael A; Lisboa, Luiz F; Thomas, Brad S; Battegay, Manuel; Khanna, Nina; Mueller, Thomas; Tyrrell, D Lorne J; Houghton, Michael; Humar, Atul; Kumar, Deepali (2014). IL-28B is a Key Regulator of B- and T-Cell Vaccine Responses against Influenza. PLoS Pathogens, 10(12):e1004556.

Arpaia, Salvatore; Birch, Andrew Nicholas Edmund; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Lieve, Herman; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, József; Kleter, Gijs; Løvik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesná, Jaroslava; Perry, Joe; Rostoks, Nils (2014). Scientific Opinion on the use of existing environmental surveillance networks to support the post-market environmental monitoring of genetically modified plants. EFSA Journal, 12(11):3883.

Arpaia, Salvatore; Birch, Andrew Nicholas Edmund; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Lieve, Herman; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, József; Kleter, Gijs; Løvik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesná, Jaroslava; Perry, Joe; Rostoks, Nils (2014). Scientific Opinion on objections of a Member State to a notification (Reference C/NL/13/01) for the placing on the market of the genetically modified carnation SHD-27531-4 with a modified colour, for import of cut flowers for ornamental use, under Part C of Directive 2001/18/EC from Suntory Holdings Limited. EFSA Journal, 12(11):3878.

Roulin, Pascal S; Lötzerich, Mark; Torta, Federico; Tanner, Lukas B; van Kuppeveld, Frank J M; Wenk, Markus R; Greber, Urs F (2014). Rhinovirus uses a phosphatidylinositol 4-phosphate/cholesterol counter-current for the formation of replication compartments at the ER-Golgi interface. Cell Host & Microbe, 16(5):677-690.

Monaghan, Jacqueline; Matschi, Susanne; Shorinola, Oluwaseyi; Rovenich, Hanna; Matei, Alexandra; Segonzac, Cécile; Malinovsky, Frederikke Gro; Rathjen, John P; Maclean, Dan; Romeis, Tina; Zipfel, Cyril (2014). The Calcium-Dependent Protein Kinase CPK28 Buffers Plant Immunity and Regulates BIK1 Turnover. Cell Host & Microbe, 16(5):605-615.

Hartmann, Matthias; Martarelli, Corinna S; Mast, Fred W; Stocker, Kurt (2014). Eye movements during mental time travel follow a diagonal line. Consciousness and Cognition, 30:201-209.

Münz, Christian (2014). Regulation of innate immunity by the molecular machinery of macroautophagy. Cellular Microbiology, 16(11):1627-1636.

Bao, Kai; Belibasakis, Georgios N; Thurnheer, Thomas; Aduse-Opoku, Joseph; Curtis, Michael A; Bostanci, Nagihan (2014). Role of Porphyromonas gingivalis gingipains in multi-species biofilm formation. BMC Microbiology, 14(1):258.

Sundqvist, Emilie; Buck, Dorothea; Warnke, Clemens; Albrecht, Eva; Gieger, Christian; Khademi, Mohsen; Lima Bomfim, Izaura; Fogdell-Hahn, Anna; Link, Jenny; Alfredsson, Lars; Søndergaard, Helle Bach; Hillert, Jan; Oturai, Annette B; Hemme, Bernhard; Kockum, Ingrid; Olsson, Tomas; Martin, Roland (2014). JC polyomavirus infection is strongly controlled by human leucocyte antigen class II variants. PLoS Pathogens, 10(4):e1004084.

Prasad, Vibhu; Suomalainen, Maarit; Pennauer, Mirjam; Yakimovich, Artur; Andriasyan, Vardan; Hemmi, Silvio; Greber, Urs F (2014). Chemical induction of unfolded protein response enhances cancer cell killing through lytic virus infection. Journal of Virology, 88(22):13086-13098.

Schlaepfer, Erika; Rochat, Mary-Aude; Duo, Li; Speck, Roberto F (2014). Triggering TLR2, -3, -4, -5, and -8 reinforces the restrictive nature of M1- and M2-polarized macrophages to HIV. Journal of Virology, 88(17):9769-9781.

Jost, Ted; Lacroix, Christophe; Braegger, Christian P; Rochat, Florence; Chassard, Christophe (2014). Vertical mother-neonate transfer of maternal gut bacteria via breastfeeding. Environmental Microbiology, 16(9):2891-2904.

Antsiferova, Olga; Müller, Anne; Rämer, Patrick C; Chijioke, Obinna; Chatterjee, Bithi; Raykova, Ana; Planas, Raquel; Sospedra, Mireia; Shumilov, Anatoliy; Tsai, Ming-Han; Delecluse, Henri-Jacques; Münz, Christian (2014). Adoptive transfer of EBV specific CD8+ T cell clones can transiently control EBV infection in humanized mice. PLoS Pathogens, 10(8):e1004333.

Burach, F; Pospischil, A; Hanger, J; Loader, J; Pillonel, T; Greub, G; Borel, N (2014). Chlamydiaceae and Chlamydia-like organisms in the koala (Phascolarctos cinereus)-Organ distribution and histopathological findings. Veterinary Microbiology, 172(1-2):230-240.

Arpaia, Salvatore; Birch, Andrew Nicholas Edmund; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn Opsahl; Jones, Huw; Kiss, József; Kleter, Gijs; Løvik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesná, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2014). Scientific Opinion on applications (EFSA-GMO-UK-2008-57 and EFSA-GMO-RX-MON15985) for the placing on the market of insect-resistant genetically modified cotton MON 15985 for food and feed uses, import and processing, and for the renewal of authorisation of existing products produced from cotton MON 15985, both under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 12(7):3770.

Borel, N; Pospischil, A; Hudson, A P; Rupp, J; Schoborg, R V (2014). The role of viable but non-infectious developmental forms in chlamydial biology. Frontiers in Cellular and Infection Microbiology:4:97.

Fazli, Mustafa; Almblad, Henrik; Rybtke, Morten Levin; Givskov, Michael; Eberl, Leo; Tolker-Nielsen, Tim (2014). Regulation of biofilm formation in Pseudomonasand Burkholderias pecies. Environmental Microbiology, 16(7):1961-1981.

Whitney, Paul G; Bär, Eva; Osorio, Fabiola; Rogers, Neil C; Schraml, Barbara U; Deddouche, Safia; LeibundGut-Landmann, Salomé; Reis e Sousa, Caetano (2014). Syk signaling in dendritic cells orchestrates innate resistance to systemic fungal infection. PLoS Pathogens, 10(7):e1004276.

EFSA Panel (2014). Scientific Opinion on the annual post-market environmental monitoring (PMEM) report from Monsanto Europe S.A. on the cultivation of genetically modified maize MON 810 in 2012. EFSA Journal, 12(6):3704.

Haas, Florian; Yamauchi, Kazuma; Murat, Monika; Bernasconi, Michele; Yamanaka, Noboru; Speck, Roberto F; Nadal, David (2014). Activation of NF-κB via Endosomal Toll-like Receptor 7 (TLR7)or TLR9 Suppresses Murine Herpes Virus 68 Reactivation. Journal of Virology, 88(17):10002-10012.

EFSA Panel (2014). Scientific Opinion on application (EFSA-GMO-BE-2011-101) for the placing on the market of herbicide-tolerant genetically modified oilseed rape MON 88302 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 12(6):3701.

Meyer Sauteur, Patrick M; Jacobs, Bart C; Spuesens, Emiel B M; Jacobs, Enno; Nadal, David; Vink, Cornelis; van Rossum, Annemarie M C (2014). Antibody responses to Mycoplasma pneumoniae: role in pathogenesis and diagnosis of encephalitis? PLoS Pathogens, 10(6):e1003983.

Abel zur Wiesch, Pia; Kouyos, Roger; Abel, Sören; Viechtbauer, Wolfgang; Bonhoeffer, Sebastian (2014). Cycling empirical antibiotic therapy in hospitals: Meta-analysis and models. PLoS Pathogens, 10(6):e1004225.

EFSA Panel (2014). Scientific Opinion on application (EFSA-GMO-NL-2010-77) for the placing on the market of herbicide-tolerant genetically modified cotton GHB614 × LLCotton25 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Bayer CropScience. EFSA Journal, 12(5):3680.

EFSA Panel (2014). Scientific Opinion on application (EFSA-GMO-UK-2009-76) for the placing on the market of soybean MON 87769 genetically modified to contain stearidonic acid, for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 12(5):3644.

Wyrzucki, A; Dreyfus, C; Kohler, I; Steck, M; Wilson, I A; Hangartner, L (2014). Alternative Recognition of the Conserved Stem Epitope in Influenza A Virus Hemagglutinin by a VH3-30-Encoded Heterosubtypic Antibody. Journal of Virology, 88(12):7083-7092.

Schneider, Christoph; Nobs, Samuel P; Heer, Alex K; Kurrer, Michael; Klinke, Glynis; van Rooijen, Nico; Vogel, Johannes; Kopf, Manfred (2014). Alveolar macrophages are essential for protection from respiratory failure and associated morbidity following influenza virus infection. PLoS Pathogens, 10(4):e1004053.

Jost, Ted; Lacroix, Christophe; Braegger, Christian; Chassard, Christophe (2014). Stability of the maternal gut microbiota during late pregnancy and early lactation. Current Microbiology, 68(4):419-427.

Arpaia, Salvatore; et al (2014). Statement complementing the EFSA opinion on application EFSA GMO UK 2007 41 (cotton MON 88913 for food and feed uses, import and processing) taking into consideration updated bioinformatic analyses. EFSA Journal, 12(3):3591.

Münz, Christian (2014). Influenza A virus lures autophagic protein LC3 to budding sites. Cell Host & Microbe, 15(2):130-131.

Sollberger, Gabriel; Strittmatter, Gerhard E; Garstkiewicz, Martha; Sand, Jennifer; Beer, Hans-Dietmar (2014). Caspase-1: The inflammasome and beyond. Innate immunity, 20(2):115-125.

Arpaia, Salvatore; Birch, Andrew Nicholas Edmund; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, József; Kleter, Gijs; Løvik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesná, Jaroslava; Perry, Joe; Rostoks, Nils (2014). Scientific Opinion on application (EFSA-GMO-NL-2009-64) for the placing on the market of herbicide-tolerant genetically modified soybean BPS-CV127-9 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from BASF Plant Science. EFSA Journal, 12(1):3505.

Kost, Thomas; Stopnisek, Nejc; Agnoli, Kirsty; Eberl, Leo; Weisskopf, Laure (2014). Oxalotrophy, a widespread trait of plant-associated Burkholderia species, is involved in successful root colonization of lupin and maize by Burkholderia phytofirmans. Frontiers in Microbiology:4:421.

Mathew, Anugraha; Eberl, Leo; Carlier, Aurelien L (2014). A novel siderophore-independent strategy of iron uptake in the genus Burkholderia. Molecular Microbiology, 91(4):805-820.

Shabarova, Tanja; Villiger, Jörg; Morenkov, Oleg; Niggemann, Jutta; Dittmar, Thorsten; Pernthaler, Jakob (2014). Bacterial community structure and dissolved organic matter in repeatedly flooded subsurface karst water pools. FEMS Microbiology Ecology, 89(1):111-126.

Eckert, Ester M; Pernthaler, Jakob (2014). Bacterial epibionts of Daphnia: A potential route for the transfer of dissolved organic carbon in freshwater food webs. The ISME journal, 8(9):1808-1819.

Jurankova, J; Basso, W; Neumayerova, H; Balaz, V; Janova, E; Sidler, X; Deplazes, P; Koudela, B (2014). Brain is the predilection site of Toxoplasma gondii in experimentally inoculated pigs as revealed by magnetic capture and real-time PCR. Food Microbiology, 38:167-170.

Humphrey, S; Chaloner, G; Kemmett, K; Davidson, N; Williams, N; Kipar, A; Humphrey, T; Wigley, P (2014). Campylobacter jejuni is not merely a commensal in commercial broiler chickens and affects bird welfare. mBio, 5(4):e01364-14.

Schnell, Barbara; Staubli, Titu; Harris, Nicola L; Rogler, Gerhard; Kopf, Manfred; Loessner, Martin J; Schuppler, Markus (2014). Cell-wall deficient L. monocytogenes L-forms feature abrogated pathogenicity. Frontiers in Cellular and Infection Microbiology:4:60.

Abgottspon, Helga; Stephan, Roger; Bagutti, Claudia; Brodmann, Peter; Hächler, Herbert; Zurfluh, Kati (2014). Characteristics of extended-spectrum cephalosporin resistant Escherichia coli isolated from Swiss and imported poultry meat. Journal of Food Protection, 77:112-115.

Althaus, D; Lehner, Angelika; Brisse, S; Maury, M; Tasara, Taurai; Stephan, Roger (2014). Characterization of Listeria monocytogenes strains isolated during 2011-2013 from human infections in Switzerland. Foodborne Pathogens and Disease, 11(10):753-758.

Althaus, Denise Andrea. Characterization of Listeria monocytogenes strains isolated during 2011-2013 from human infections in Switzerland. 2014, University of Zurich, Vetsuisse Faculty.

Merz, Axel; Pflüger, Valentin; Johler, Sophia (2014). Coagulase-negative staphylcococci lead to false-positive results on chromID S. aureus and chromID MRSA agar. Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 65:133-164.

Arguedas-Villa, Carolina; Kovacevic, Jovana; Allen, Kevin J; Stephan, Roger; Tasara, Taurai (2014). Cold growth behavior and genetic comparison of Canadian and Swiss Listeria monocytogenes strains associated with the food supply chain and human listeriosis cases. Food Microbiology, 40:81-87.

Ross-Gillespie, Adin; Kümmerli, Rolf (2014). Collective decision-making in microbes. Frontiers in Microbiology:5:54.

Münz, Christian (2014). Dendritic cells during Epstein Barr virus infection. Frontiers in Microbiology:5:308.

Glatz, Martin; Müllegger, Robert R; Maurer, Florian; Fingerle, Volker; Achermann, Yvonne; Wilske, Bettina; Bloemberg, Guido V (2014). Detection of Candidatus Neoehrlichia mikurensis, Borrelia burgdorferi sensu lato genospecies and Anaplasma phagocytophilum in a tick population from Austria. Ticks and Tick-borne Diseases, 5(2):139-144.

Desirò, Alessandro; Salvioli, Alessandra; Ngonkeu, Eddy L; Mondo, Stephen J; Epis, Sara; Faccio, Antonella; Kaech, Andres; Pawlowska, Teresa E; Bonfante, Paola (2014). Detection of a novel intracellular microbiome hosted in arbuscular mycorrhizal fungi. The ISME journal, 8(2):257-270.

Abdel-Mohsen, Mohamed; Deng, Xutao; Liegler, Teri; Guatelli, John C; Salama, Mohamed S; Ghanem, Hussam El-Din A; Rauch, Andri; Ledergerber, Bruno; Deeks, Steven G; Günthard, Huldrych F; Wong, Joseph K; Pillai, Satish K (2014). Effects of alpha interferon treatment on intrinsic anti-HIV-1 immunity in vivo. Journal of Virology, 88(1):763-767.

Peng, Silvio; Stephan, Roger; Hummerjohann, Jörg; Tasara, Taurai (2014). Evaluation of three reference genes of Escherichia coli for mRNA expression level normalization in view of salt and organic acid stress exposure in food. FEMS Microbiology Letters, 355(1):78-82.

Shah, Nikunj; Hülsmeier, Andreas J; Hochhold, Nina; Neidhart, Michel; Gay, Steffen; Hennet, Thierry (2014). Exposure to Mimivirus collagen promotes arthritis. Journal of Virology, 88(2):838-845.

Zbinden, Andrea; Aras, Fatma; Zbinden, Reinhard; Mouttet, Forouhar; Schmidlin, Patrick R; Bloemberg, Guido V; Bostanci, Nagihan (2014). Frequent detection of Streptococcus tigurinus in the human oral microbial flora by a specific 16S rRNA gene real-time TaqMan PCR. BMC Microbiology, 14:231.

Meier, Roger; Franceschini, Andrea; Horvath, Peter; Tetard, Marilou; Mancini, Roberta; von Mering, Christian; Helenius, Ari; Lozach, Pierre-Yves (2014). Genome-Wide Small Interfering RNA Screens Reveal VAMP3 as a Novel Host Factor Required for Uukuniemi Virus Late Penetration. Journal of Virology, 88(15):8565-8578.

Stopnisek, Nejc; Bodenhausen, Natacha; Frey, Beat; Fierer, Noah; Eberl, Leo; Weisskopf, Laure (2014). Genus-wide acid tolerance accounts for the biogeographical distribution of soil Burkholderia populations. Environmental Microbiology, 16(6):1503-1512.

Simon, Sylvia; Wagner, Maria A; Rothmeier, Eva; Müller-Taubenberger, Annette; Hilbi, Hubert (2014). Icm/Dot-dependent inhibition of phagocyte migration by Legionella is antagonized by a translocated Ran GTPase activator. Cellular Microbiology, 16(7):977-992.

Duscha, Stefan; Boukari, Heithem; Shcherbakov, Dimitri; Salian, Sumantha; Silva, Sandrina; Kendall, Ann; Kato, Takayuki; Akbergenov, Rashid; Perez-Fernandez, Deborah; Bernet, Bruno; Vaddi, Swapna; Thommes, Pia; Schacht, Jochen; Crich, David; Vasella, Andrea; Böttger, Erik C (2014). Identification and evaluation of improved 4'-O-(alkyl) 4,5-disubstituted 2-deoxystreptamines as next-generation aminoglycoside antibiotics. mBio, 5(5):e01827-e01814.

do Cabo Fernandes, Claudia; Rechenberg, Dan-Krister; Zehnder, Matthias; Belibasakis, Georgios N (2014). Identification of Synergistetes in endodontic infections. Microbial Pathogenesis, 73:1-6.

Manske, Christian; Hilbi, Hubert (2014). Metabolism of the vacuolar pathogen Legionella and implications for virulence. Frontiers in Cellular and Infection Microbiology:4:125.

Dirren, Sebastian; Salcher, Michaela M; Blom, J F; Schweikert, M; Posch, T (2014). Ménage-à-trois: The amoeba Nuclearia sp. from Lake Zurich with its ecto- and endosymbiotic bacteria. Protist, 165(5):745-758.

Morger, Jennifer; Bajnok, Jaroslav; Boyce, Kellyanne; Craig, Philip S; Rogan, Michel T; Lun, Zhao-Rong; Hide, Geoff; Tschirren, Barbara (2014). Naturally occurring Toll-like receptor 11 (TLR11) and Toll-like receptor 12 (TLR12) polymorphisms are not associated with Toxoplasma gondii infection in wild wood mice. Infection, Genetics and Evolution, 26:180-184.

Hornok, Sándor; Meli, Marina L; Gönczi, Enikő; Halász, Edina; Takács, Nóra; Farkas, Róbert; Hofmann-Lehmann, Regina (2014). Occurrence of ticks and prevalence of Anaplasma phagocytophilum and Borrelia burgdorferi s.l. in three types of urban biotopes: Forests, parks and cemeteries. Ticks and Tick-borne Diseases, 5(6):785-789.

Schell, Ursula; Kessler, Aline; Hilbi, Hubert (2014). Phosphorylation signalling through the Legionella quorum sensing histidine kinases LqsS and LqsT converges on the response regulator LqsR. Molecular Microbiology, 92(5):1039-1055.

Schoborg, Robert V; Borel, Nicole (2014). Porcine epidemic diarrhea virus (PEDV) co-infection induced chlamydial persistence/stress does not require viral replication. Frontiers in Cellular and Infection Microbiology:4:20.

Belibasakis, Georgios N; Thurnheer, Thomas; Bostanci, Nagihan (2014). Porphyromonas gingivalis: A heartful oral pathogen? Virulence, 5(4):575-580.

Müller, Andreas; Hächler, Herbert; Stephan, Roger; Lehner, Angelika (2014). Presence of AmpC beta-lactamases, CSA-1, CSA-2, CMA-1, and CMA-2 conferring an unusual resistance phenotype in Cronobacter sakazakii and Cronobacter malonaticus. Microbial Drug Resistance, 20(4):275-280.

Pohl, M O; Edinger, T O; Stertz, S (2014). Prolidase is required for early trafficking events during influenza a virus entry. Journal of Virology, 88(19):11271-11283.

Stephan, Roger; Grim, Christopher J; Gopinath, Gopal R; Mammel, Mark K; Sathyamoorthy, Venugopal; Trach, Larisa H; Chase, Hannah R; Fanning, Séamus; Tall, Ben D (2014). Re-examination of the taxonomic status of Enterobacter helveticus, Enterobacter pulveris and Enterobacter turicensis as members of the genus Cronobacter and their reclassification in the genera Franconibacter gen. nov. and Siccibacter gen. nov. as Franconibacter helveticus comb. nov., Franconibacter pulveris comb. nov. and Siccibacter turicensis comb. nov., respectively. International Journal of Systematic and Evolutionary Microbiology, 64(10):3402-3410.

Pedersen, K; Sørensen, G; Szabo, I; Hächler, H; Le Hello, S (2014). Repeated isolation of Salmonella enterica Goverdhan, a very rare serovar, from Danish poultry surveillance samples. Veterinary Microbiology, 174:596-599.

Zurfluh, Katrin; Jakobi, Gianna; Stephan, Roger; Hächler, Herbert; Nüesch-Inderbinen, Magdalena (2014). Replicon typing of plasmids carrying blaCTX-M-1 in Enterobacteriaceae of animal, environmental and human origin. Frontiers in Microbiology, 5:555.

Hetzel, U; Sironen, T; Laurinmäki, P; Liljeroos, L; Patjas, A; Henttonen, H; Vaheri, A; Artelt, A; Kipar, A; Butcher, S J; Vapalahti, O; Hepojoki, J (2014). Reply to "Updated phylogenetic analysis of arenaviruses detected in boid snakes". Journal of Virology, 88(2):1401.

Hartmann, Martin; Niklaus, Pascal A; Zimmermann, Stephan; Schmutz, Stefan; Kremer, Johann; Abarenkov, Kessy; Lüscher, Peter; Widmer, Franco; Frey, Beat (2014). Resistance and resilience of the forest soil microbiome to logging-associated compaction. The ISME journal, 8(1):226-244.

Maestrini, Bernardo; Herrmann, Anke M; Nannipieri, Paolo; Schmidt, Michael W I; Abiven, Samuel (2014). Ryegrass-derived pyrogenic organic matter changes organic carbon and nitrogen mineralization in a temperate forest soil. Soil Biology and Biochemistry, 69:291-301.

Cummings, Kevin J; Rodriguez-Rivera, Lorraine D; Mitchell, Katharyn J; Hoelzer, Karin; Wiedmann, Martin; McDonough, Patrick L; Altier, Craig; Warnick, Lorin D; Perkins, Gillian A (2014). Salmonella enterica serovar Oranienburg outbreak in a veterinary medical teaching hospital with evidence of nosocomial and on-farm transmission. Vector Borne and Zoonotic Diseases, 14(7):496-502.

Neuenschwander, Stefan M; Pernthaler, Jakob; Posch, Thomas; Salcher, Michaela M (2014). Seasonal growth potential of rare lake water bacteria suggest their disproportional contribution to carbon fluxes. Environmental Microbiology, 17(3):781-795.

Braun, Ueli; Reichle, S F; Reichert, C; Hässig, Michael; Stalder, H P; Bachofen, Claudia; Peterhans, E (2014). Sheep persistently infected with Border disease readily transmit virus to calves seronegative to BVD virus. Veterinary Microbiology, 168(1):98-104.

Sarno, Eleonora; Costanzo, N; Quaranta, V; Luigi Santoro, A M; Stephan, Roger (2014). Short communication: Prevalence of IgG against hepatitis E virus, Salmonella spp., and Toxoplasma gondii in meat juice samples from wild boars hunted in Southern Italy. Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 65:141-144.

Martin, R; Sospedra, M (2014). Sphingosine-1 phosphate and central nervous system. In: Oldstone, M B A; Rosen, H. Sphingosine-1-Phosphate Signaling in Immunology and Infectious Diseases. Springer: Springer, 149-170.

Bender, S Franz; Plantenga, Faline; Neftel, Albrecht; Jocher, Markus; Oberholzer, Hans-Rudolf; Köhl, Luise; Giles, Madeline; Daniell, Tim J; van der Heijden, Marcel G A (2014). Symbiotic relationships between soil fungi and plants reduce N2O emissions from soil. The ISME journal, 8(6):1336-1345.

Andreoni, Federica; Ogawa, Taiji; Ogawa, Mariko; Madon, Jerzy; Uchiyama, Satoshi; Schuepbach, Reto A; Zinkernagel, Annelies S (2014). The IL-8 protease SpyCEP is detrimental for Group A Streptococcus host-cells interaction and biofilm formation. Frontiers in Microbiology:5:339.

Dolinsky, Stephanie; Haneburger, Ina; Cichy, Adam; Hannemann, Mandy; Itzen, Aymelt; Hilbi, Hubert (2014). The Legionella longbeachae Icm/Dot substrate SidC selectively binds phosphatidylinositol 4-phosphate with nanomolar affinity and promotes pathogen vacuole-endoplasmic reticulum interactions. Infection and Immunity, 82(10):4021-4033.

Dudler, Robert (2014). The role of bacterial phytotoxins in inhibiting the eukaryotic proteasome. Trends in Microbiology, 22(1):28-35.

Sorce, Silvia; Nuvolone, Mario; Keller, Annika; Falsig, Jeppe; Varol, Ahmet; Schwarz, Petra; Bieri, Monika; Budka, Herbert; Aguzzi, Adriano (2014). The role of the NADPH oxidase NOX2 in prion pathogenesis. PLoS Pathogens, 10(12):e1004531.

Krause, Sascha; Le Roux, Xavier; Niklaus, Pascal A; van Bodegom, Peter M; Lennon, Jay T; Bertilsson, Stefan; Grossart, Hans-Peter; Philippot, Laurent; Bodelier, Paul L E (2014). Trait-based approaches for understanding microbial biodiversity and ecosystem functioning. Frontiers in Microbiology:5:251.

Peng, Silvio; Stephan, Roger; Hummerjohann, Jörg; Tasara, Taurai (2014). Transcriptional analysis of different stress response genes in Escherichia coli strains subjected to sodium chloride and lactic acid stress. FEMS Microbiology Letters, 361(2):131-137.

Belibasakis, G N; Bao, K; Bostanci, N (2014). Transcriptional profiling of human gingival fibroblasts in response to multi-species in vitro subgingival biofilms. Molecular Oral Microbiology, 29(4):174-183.

Seidl, Kati; Leimer, Nadja; Palheiros Marques, Miguel; Furrer, Alexandra; Senn, Gabriela; Holzmann-Bürgel, Anne; Matt, Ulrich; Zinkernagel, Annelies S (2014). USA300 methicillin-resistant Staphylococcus aureus in Zurich, Switzerland between 2001 and 2013. International Journal of Medical Microbiology : IJMM, 304(8):1118-1122.

Sihto, Henna-Maria; Tasara, Taurai; Stephan, Roger; Johler, Sophia (2014). Validation of reference genes for normalization of qPCR mRNA expression levels in Staphylococcus aureus exposed to osmotic and lactic acid stress conditions encountered during food production and preservation. FEMS Microbiology Letters, 356(1):134-140.

Hornok, Sándor; Földvári, Gábor; Rigó, Krisztina; Meli, Marina L; Tóth, Mária; Molnár, Viktor; Gönczi, Enikő; Farkas, Róbert; Hofmann-Lehmann, Regina (2014). Vector-borne agents detected in fleas of the northern white-breasted hedgehog. Vector Borne and Zoonotic Diseases, 14(1):74-76.

Zurfluh, Katrin; Wang, Juan; Klumpp, Jochen; Nüesch-Inderbinen, Magdalena; Fanning, Séamus; Stephan, Roger (2014). Vertical transmission of highly similar blaCTX-M-1-harbouring IncI1 plasmids in Escherichia coli with different MLST types in the poultry production pyramid. Frontiers in Microbiology, 5:519.

Baumgartner, A; Niederhauser, I; Johler, S (2014). Virulence and resistance gene profiles of Staphylococcus aureus strains isolated from ready-to-eat foods. Journal of Food Protection, 77:1232-1236.

Wongfun, Nuttakan; Plötze, Michael; Furrer, Gerhard; Brandl, Helmut (2014). Weathering of granite from the Damma glacier area: the contribution of cyanogenic bacteria. Geomicrobiology Journal, 31(2):93-100.

Alonso-Sáez, Laura; Zeder, Michael; Harding, Tommy; Pernthaler, Jakob; Lovejoy, Connie; Bertilsson, Stefan; Pedrós-Alió, Carlos (2014). Winter bloom of a rare betaproteobacterium in the Arctic Ocean. Frontiers in Microbiology:5:425.

2013

Gladiator, André; LeibundGut-Landmann, Salomé (2013). Innate lymphoid cells: new players in IL-17-mediated antifungal immunity. PLoS Pathogens, 9(12):e1003763.

Wang, I-Hsuan; Suomalainen, Maarit; Andriasyan, Vardan; Kilcher, Samuel; Mercer, Jason; Neef, Anne; Luedtke, Nathan W; Greber, Urs F (2013). Tracking viral genomes in host cells at single-molecule resolution. Cell Host & Microbe, 14(4):468-480.

Suomalainen, Maarit; Luisoni, Stefania; Boucke, Karin; Bianchi, Sarah; Engel, Daniel A; Greber, Urs F (2013). A direct and versatile assay measuring membrane penetration of adenovirus in single cells. Journal of Virology, (01833):13.

Hauber, I; Hofmann-Sieber, H; Chemnitz, J; Dubrau, D; Chusainow, J; Stucka, R; Hartjen, P; Schambach, A; Ziegler, P; Hackmann, K; Schröck, E; Schumacher, U; Lindner, C; Grundhoff, A; Baum, C; Manz, M G; Buchholz, F; Hauber, J (2013). Highly significant antiviral activity of HIV-1 LTR-specific tre-recombinase in humanized mice. PLoS Pathogens, 9(9):e1003587.

Lohrmann, F; Dijkman, R; Stertz, S; Thiel, V; Haller, O; Staeheli, P; Kochs, G (2013). Emergence of a C-terminal seve 1 n amino acid elongation of NS1 around 1950 2 conferred a minor growth advantage to former seasonal influenza A viruses. Journal of Virology, 87(20):11300-11303.

Wang, J; Stephan, Roger; Karczmarczyk, M; Yan, Q; Hächler, H; Fanning, S (2013). Molecular characterisation of bla ESBL-harbouring conjugative plasmids identified in multi-drug resistant Escherichia coli isolated from food-producing animals and healthy humans. Frontiers in Microbiology, 4:188.

Vale-Silva, Luís; Ischer, Françoise; LeibundGut-Landmann, Salomé; Sanglard, Dominique (2013). Gain-of-function mutations inPDR1, a regulator of antifungal drug resistance in Candida glabrata, control adherence to host cells. Infection and Immunity, 81(5):1709-1720.

Vonaesch, Pascale; Cardini, Steven; Sellin, Mikael E; Goud, Bruno; Hardt, Wolf-Dietrich; Schauer, Kristine (2013). Quantitative insights into actin rearrangements and bacterial target site selection fromSalmonella Typhimurium infection of micropatterned cells. Cellular Microbiology, 15(11):1851-1865.

Zeitz, Johanna O; Kreuzer, Michael; Soliva, Carla R (2013). In vitro methane formation and carbohydrate fermentation by rumen microbes as influenced by selected rumen ciliate species. European Journal of Protistology, 49(3):389-399.

Alamares-Sapuay, J G; Martinez-Gil, L; Stertz, S; Miller, M S; Shaw, M L; Palese, P (2013). Serum- and glucocorticoid-regulated kinase 1 is required for nuclear export of the ribonucleoprotein of influenza A virus. Journal of Virology, 87(10):6020-6026.

Hoot, Sam; McGuire, Andrew T; Cohen, Kristen W; Strong, Roland K; Hangartner, Lars; Klein, Florian; Diskin, Ron; Scheid, Johannes F; Sather, D Noah; Burton, Dennis R; Stamatatos, Leonidas (2013). Recombinant HIV Envelope Proteins Fail to Engage Germline Versions of Anti-CD4bs bNAbs. PLoS Pathogens, 9(1):e003106.

Mally, Manuela; Fontana, Carolina; LeibundGut-Landmann, Salomé; Laacisse, Lamia; Fan, Yao-Yun; Widmalm, Göran; Aebi, Markus (2013). Glycoengineering of host mimicking type-2 LacNAc polymers and Lewis X antigens on bacterial cell surfaces. Molecular Microbiology, 87(1):112-131.

Mohammadi, Pejman; Desfarges, Sébastien; Bartha, István; Joos, Beda; Zangger, Nadine; Muñoz, Miguel; Günthard, Huldrych F; Beerenwinkel, Niko; Telenti, Amalio; Ciuffi, Angela (2013). 24 hours in the life of HIV-1 in a T cell line. PLoS Pathogens, 9(1):e1003161.

de Melo Oliveira, Maria G; Abels, Susanne; Zbinden, Reinhard; Bloemberg, Guido V; Zbinden, Andrea (2013). Accurate identification of fastidious Gram-negative rods: integration of both conventional phenotypic methods and 16S rRNA gene analysis. BMC Microbiology, 13:162.

Wolfrum, Nina; Greber, Urs F (2013). Adenovirus Signalling in Entry. Cellular Microbiology, 15(1):53-62.

Spycher, Cornelia; Herman, Emily K; Morf, Laura; Qi, Weihong; Rehrauer, Hubert; Aquino Fournier, Catharine; Dacks, Joel B; Hehl, Adrian B (2013). An ER-directed transcriptional response to unfolded protein stress in the absence of conserved sensor-transducer proteins in Giardia lamblia. Molecular Microbiology, 88(4):754-771.

Gobeli, S; Thomann, A; Wyss, F; Kuehni-Boghenbor, K; Brodard, I; Perreten, V (2013). Arsenicicoccus dermatophilus sp. nov., a hypha-forming bacterium isolated from the skin of greater flamingos (Phoenicopterus roseus) with pododermatitis. International Journal of Systematic and Evolutionary Microbiology, 63:4046-4051.

Nüesch-Inderbinen, Magdalena; Hofer, Eveline; Hächler, Herbert; Beutin, L; Stephan, Roger (2013). Characteristics of enteroaggregative Escherichia coli isolated from healthy carriers and from patients with diarrhea. Journal of Medical Microbiology, 62:1828-1834.

Gallati, Christine; Stephan, Roger; Hächler, Herbert; Malorny, Burkhard; Schroeter, Andreas; Nüesch-Inderbinen, Magdalena (2013). Characterization of Salmonella enterica serovar 4,[5],12:i:- clones isolated from human and other sources in Switzerland between 2007 and 2011. Foodborne Pathogens and Disease, 10(6):549-554.

Schärer, K; Stephan, Roger; Tasara, T (2013). Cold shock proteins contribute to the regulation of listeriolysin o production in listeria monocytogenes. Foodborne Pathogens and Disease, 10:1023-1029.

Schärer, K. Cold shock proteins contribute to the regulation of listeriolysin o production in listeria monocytogenes. 2013, University of Zurich, Vetsuisse Faculty.

Margot, H; Stephan, Roger; O'Mahony, E; Iversen, C (2013). Comparison of rapid cultural methods for the detection of Salmonella species. International Journal of Food Microbiology, 163(2-3):47-50.

Lange, Christian E; Tobler, Kurt; Schraner, Elisabeth M; Vetsch, Elisabeth; Fischer, Nina M; Ackermann, Mathias; Favrot, Claude (2013). Complete canine papillomavirus life cycle in pigmented lesions. Veterinary Microbiology, 162(2-4):388-395.

Mann, Axel; Friedrich, Nikolas; Krarup, Anders; Weber, Jacqueline; Stiegeler, Emanuel; Dreier, Birgit; Pugach, Pavel; Robbiani, Melissa; Riedel, Tina; Moehle, Kerstin; Robinson, John A; Rusert, Peter; Plückthun, Andreas; Trkola, Alexandra (2013). Conformation-dependent recognition of HIV gp120 by designed ankyrin repeat proteins provides access to novel HIV entry inhibitors. Journal of Virology, 87(10):5868-5881.

Nüesch-Inderbinen, Magdalena; Abgottspon, Helga; Zurfluh, Katrin; Nüesch, Hans-Jakob; Stephan, Roger; Hächler, Herbert (2013). Cross-sectional study on fecal carriage of Enterobacteriaceae with resistance to extended-spectrum cephalosporins in primary care patients. Microbial Drug Resistance, 19(5):362-369.

Vratskikh, Oksana; Stiasny, Karin; Zlatkovic, Jürgen; Tsouchnikas, Georgios; Jarmer, Johanna; Karrer, Urs; Roggendorf, Michael; Roggendorf, Hedwig; Allwinn, Regina; Heinz, Franz X (2013). Dissection of antibody specificities induced by yellow fever vaccination. PLoS Pathogens, 9(6):e1003458.

Choudhary, P K; Duret, A; Rohrbach-Brandt, E; Holliger, C; Sigel, Roland K O; Maillard, J (2013). Diversity of cobalamin riboswitches in the corrinoid-producing organohalide respirer Desulfitobacterium hafniense. Journal of Bacteriology, 195(22):5186-5195.

Belibasakis, Georgios N; Guggenheim, Bernhard; Bostanci, Nagihan (2013). Down-regulation of NLRP3 inflammasome in gingival fibroblasts by subgingival biofilms: Involvement of Porphyromonas gingivalis. Innate Immunity, 19(1):3-9.

Hombach, Michael; Somoskövi, Akos; Hömke, Rico; Ritter, Claudia; Böttger, Erik C (2013). Drug susceptibility distributions in slowly growing non-tuberculous mycobacteria using MGIT 960 TB eXiST. International Journal of Medical Microbiology : IJMM, 303(5):270-276.

Huber, H; Zweifel, C; Wittenbrink, M M; Stephan, Roger (2013). ESBL-producing uropathogenic Escherichia coli isolated from dogs and cats in Switzerland. Veterinary Microbiology, 162(2-4):992-996.

Alonso, Cecilia; Piccini, Claudia; Unrein, Fernando; Bertoglio, Florencia; Conde, Daniel; Pernthaler, Jakob (2013). Environmental dynamics as a structuring factor for microbial carbon utilization in a subtropical coastal lagoon. Frontiers in Microbiology:4:14.

Baumann, J; Novacco, M; Riond, B; Boretti, F S; Hofmann-Lehmann, R (2013). Establishment and characterization of a low-dose Mycoplasma haemofelis infection model. Veterinary Microbiology, 167(3-4):410-416.

Margot, H; Cernela, N; Iversen, C; Zweifel, C; Stephan, Roger (2013). Evaluation of seven different commercially available real-time PCR assays for detection of shiga toxin 1 and 2 gene subtypes. Journal of Food Protection, 76(5):871-873.

Faso, C; Konrad, C; Schraner, E M; Hehl, A B (2013). Export of cyst wall material and Golgi organelle neogenesis in Giardia lamblia depends on ER exit sites. Cellular Microbiology, 15(4):537-553.

Krengel, Annika; Meli, Marina L; Cattori, Valentino; Wachter, Bettina; Willi, Barbara; Thalwitzer, Susanne; Melzheimer, Jörg; Hofer, Heribert; Lutz, Hans; Hofmann-Lehmann, Regina (2013). First evidence of hemoplasma infection in free-ranging Namibian cheetahs (Acinonyx jubatus). Veterinary Microbiology, 162(2-4):972-976.

Drummond, N; Stephan, Roger; Haughton, P; Murphy, B; Fanning, S (2013). Further characterization of three Yersinia enterocolitica strains with a nalidixic acid-resistant phenotype isolated from humans with diarrhea. Foodborne Pathogens and Disease, 10(8):744-746.

Müller, A; Stephan, Roger; Fricker-Feer, C; Lehner, Angelika (2013). Genetic diversity of Cronobacter sakazakii isolates collected from a Swiss infant formula production facility. Journal of Food Protection, 76(5):883-887.

Eckert, Ester M; Baumgartner, Michael; Huber, Iris M; Pernthaler, Jakob (2013). Grazing resistant freshwater bacteria profit from chitin and cell-wall-derived organic carbon. Environmental Microbiology, 15(7):2019-2030.

Dudnik, Alexey; Bigler, Laurent; Dudler, Robert (2013). Heterologous expression of a Photorhabdus luminescens syrbactin-like gene cluster results in production of the potent proteasome inhibitor glidobactin A. Microbiological Research, 168(2):73-76.

Glasner, C; Sabat, A J; Chlebowicz, M A; Butaye, P; Fetsch, A; Guerra, B; Huber, H; Stephan, Roger; Torres, C; Vanderhaeghen, W; Voss, A; Wulff, M; van Dijl, J M (2013). High-resolution typing by MLVF unveils extensive heterogeneity of European livestock-associated methicillin-resistant Staphylococcus aureus isolates with the sequence type 398. International Journal of Medical Microbiology : IJMM, 303(3):124-127.

Kouyos, Roger; Klein, Eili; Grenfell, Bryan (2013). Hospital-community interactions foster coexistence between methicillin-resistant strains of Staphylococcus aureus. PLoS Pathogens, 9(2):e1003134.

Schwager, S; Agnoli, K; Kothe, M; Feldmann, F; Givskov, M; Carlier, A; Eberl, L (2013). Identification of Burkholderia cenocepacia Strain H111 virulence factors using nonmammalian infection hosts. Infection and Immunity, 81(1):143-153.

Schwizer, S; Tasara, Taurai; Zurfluh, K; Stephan, Roger; Lehner, Angelika (2013). Identification of genes involved in serum tolerance in the clinical strain Cronobacter sakazakii ES5. BMC Microbiology, 13:38.

Schwizer, S. Identification of genes involved in serum tolerance in the clinical strain Cronobacter sakazakii ES5. 2013, University of Zurich, Vetsuisse Faculty.

Salcher, Michaela M; Posch, Thomas; Pernthaler, Jakob (2013). In situ substrate preferences of abundant bacterioplankton populations in a prealpine freshwater lake. The ISME journal, 7(5):896-907.

Margot, H; Stephan, Roger; Guarino, S; Jagadeesan, B; Chilton, C; O'Mahony, E; Iversen, C (2013). Inclusivity, exclusivity and limit of detection of commercially available real-time PCR assays for the detection of Salmonella. International Journal of Food Microbiology, 165(3):221-226.

Martin, Oliver Y; Puniamoorthy, Nalini; Gubler, Andrea; Wimmer, Corinne; Bernasconi, Marco V (2013). Infections with Wolbachia, Spiroplasma, and Rickettsia in the Dolichopodidae and other Empidoidea. Infection, Genetics and Evolution, 13:317-330.

Schoster, Angelika; Kokotovic, B; Permin, A; Pedersen, P D; Bello, F Dal; Guardabassi, L (2013). In vitro inhibition of Clostridium difficile and Clostridium perfringens by commercial probiotic strains. Anaerobe, 20:36-41.

Hetzel, U; Sironen, T; Laurinmäki, P; Liljeroos, L; Patjas, A; Henttonen, H; Vaheri, A; Artelt, A; Kipar, A; Butcher, S J; Vapalahti, O; Hepojoki, J (2013). Isolation, identification, and characterization of novel arenaviruses, the etiological agents of boid inclusion body disease. Journal of Virology, 87(20):10918-10935.

Salama, Nina R; Hartung, Mara L; Müller, Anne (2013). Life in the human stomach: persistence strategies of the bacterial pathogen Helicobacter pylori. Nature Reviews. Microbiology, 11(6):385-399.

Brülle, Juliane K; Tschumi, Andreas; Sander, Peter (2013). Lipoproteins of slow-growing Mycobacteria carry three fatty acids and are N-acylated by apolipoprotein N-acyltransferase BCG_2070c. BMC Microbiology, 13:223.

Vögtlin, Andrea; Hofmann, Martin A; Nenniger, Christoph; Renzullo, Sandra; Steinrigl, Adolf; Loitsch, Angelika; Schwermer, Heinzpeter; Kaufmann, Christian; Thür, Barbara (2013). Long-term infection of goats with bluetongue virus serotype 25. Veterinary Microbiology, 166(1-2):165-173.

Richter, Kirsten; Perriard, Guillaume; Behrendt, Rayk; Schwendener, Reto A; Sexl, Veronika; Dunn, Robert; Kamanaka, Masahito; Flavell, Richard A; Roers, Axel; Oxenius, Annette (2013). Macrophage and T cell produced IL-10 promotes viral chronicity. PLoS Pathogens, 9(11):e1003735.

Shabarova, Tanja; Widmer, Franco; Pernthaler, Jakob (2013). Mass effects meet species sorting: transformations of microbial assemblages in epiphreatic subsurface karst water pools. Environmental Microbiology, 15(9):2476-2488.

Greber, Urs F; Arnberg, Niklas; Wadell, Göran; Benkő, Mária; Kremer, Eric J (2013). Meeting Report: Adenoviruses - from pathogens to therapeutics. Cellular Microbiology, 15(1):16-23.

Ebner, R; Johler, Sophia; Sihto, H M; Stephan, Roger; Zweifel, C (2013). Microarray-based characterization of Staphylococcus aureus isolates obtained from chicken carcasses. Journal of Food Protection, 76(8):1471-1474.

Maier, Lisa; Vyas, Rounak; Cordova, Carmen Dolores; Lindsay, Helen; Schmidt, Thomas Sebastian Benedikt; Brugiroux, Sandrine; Periaswamy, Balamurugan; Bauer, Rebekka; Sturm, Alexander; Schreiber, Frank; von Mering, Christian; Robinson, Mark D; Stecher, Bärbel; Hardt, Wolf-Dietrich (2013). Microbiota-derived hydrogen fuels salmonella typhimurium invasion of the gut ecosystem. Cell Host & Microbe, 14(6):641-651.

Hornok, Sándor; Dénes, Béla; Meli, Marina L; Tánczos, Balázs; Fekete, Lilla; Gyuranecz, Miklós; de la Fuente, José; de Mera, Isabel G Fernández; Farkas, Róbert; Hofmann-Lehmann, Regina (2013). Non-pet dogs as sentinels and potential synanthropic reservoirs of tick-borne and zoonotic bacteria. Veterinary Microbiology, 167(3-4):700-703.

Kautz, Timo; Amelung, Wulf; Ewert, Frank; Gaiser, Thomas; Horn, Rainer; Jahn, Reinhold; Javaux, Matthieu; Kemna, Andreas; Kuzyakov, Yakov; Munch, Jean-Charles; Pätzold, Stefan; Peth, Stephan; Scherer, Heinrich W; Schloter, Michael; Schneider, Heike; Vanderborght, Jan; Vetterlein, Doris; Walter, Achim; Wiesenberg, Guido L B; Köpke, Ulrich (2013). Nutrient acquisition from arable subsoils in temperate climates: A review. Soil Biology and Biochemistry, 57:1003-1022.

Johler, Sophia; Tichaczek-Dischinger, P; Rau, J; Sihto, H M; Lehner, Angelika; Adam, M; Stephan, Roger (2013). Outbreak of Staphylococcal food poisoning due to SEA-producing Staphylococcus aureus. Foodborne Pathogens and Disease, 10(9):777-781.

Steeb, Benjamin; Claudi, Beatrice; Burton, Neil A; Tienz, Petra; Schmidt, Alexander; Farhan, Hesso; Mazé, Alain; Bumann, Dirk (2013). Parallel Exploitation of Diverse Host Nutrients Enhances Salmonella Virulence. PLoS Pathogens, 9(4):e1003301.

Francis, S M S; Tan, M E; Fung, P R; Shaw, J G; Semmler, A; Nataatmadja, M; Bowman, R V; Fong, K M; Yang, I A (2013). Peripheral compartment innate immune response to Haemophilus influenzae and Streptococcus pneumoniae in chronic obstructive pulmonary disease patients. Innate immunity, 19(4):428-437.

Kreizinger, Zsuzsa; Hornok, Sándor; Dán, Adám; Hresko, Stanislav; Makrai, László; Magyar, Tibor; Bhide, Mangesh; Erdélyi, Károly; Hofmann-Lehmann, Regina; Gyuranecz, Miklós (2013). Prevalence of francisella tularensis and francisella-like endosymbionts in the tick population of hungary and the genetic variability of francisella-like agents. Vector Borne and Zoonotic Diseases, 13(3):160-163.

Sauteur, Patrick M Meyer; Relly, Christa; Hug, Martina; Wittenbrink, Max M; Berger, Christoph (2013). Risk factors for invasive reptile-associated salmonellosis in children. Vector Borne and Zoonotic Diseases, 13(6):419-421.

Subramoni, S; Agnoli, K; Eberl, L; Lewenza, S; Sokol, P A (2013). Role of Burkholderia cenocepacia afcE and afcF genes in determining lipid-metabolism-associated phenotypes. Microbiology, 159(Pt_3):603-614.

Arpaia, Salvatore; Birch, Nicholas; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on a request from the European Commission related to the emergency measure notified by Italy on genetically modified maize MON 810 according to Article 34 of Regulation (EC) No 1829/2003. EFSA Journal, 11(9):3371.

Arpaia, Salvatore; Birch, Nicholas; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on a request from the European Commission related to the emergency measure notified by Luxembourg on genetically modified maize MON 810 according to Article 34 of Regulation (EC) No 1829/2003. EFSA Journal, 11(9):3372.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on a request from the European Commission related to the prolongation of prohibition of the placing on the market of genetically modified oilseed rape event GT73 for import, processing and feed uses in Austria. EFSA Journal, 11(4):3201.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on a request from the European Commission related to the prolongation of prohibition of the placing on the market of genetically modified oilseed rape events Ms8, Rf3 and Ms8 x Rf3 for import, processing and feed uses in Austria. EFSA Journal, 11(4):3202.

Arpaia, Salvatore; Birch, Nicholas; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on an application from Pioneer Hi-Bred International and Dow AgroSciences LLC (EFSA-GMO-NL-2005-23) for placing on the market of genetically modified maize 59122 for food and feed uses, import, processing and cultivation under Regulation (EC) No 1829/2003. EFSA Journal, 11(3):3135.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on application (EFSA-GMO-NL-2010-87) for the placing on the market of genetically modified herbicide tolerant oilseed rape GT73 for food containing or consisting of, and food produced from or containing ingredients produced from, oilseed rape GT73 (with the exception of refined oil and food additives) under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 11(2):3079.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on application (EFSA-GMO-UK-2006-34) for the placing on the market of genetically modified maize 3272 with a thermotolerant alpha-amylase, for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Syngenta Crop Protection AG. EFSA Journal, 11(6):3252.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on application (EFSA-GMO-UK-2008-53) for the placing on the market of herbicide tolerant genetically modified maize 98140 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Pioneer Overseas Corporation. EFSA Journal, 11(4):3139.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on application EFSA-GMO-NL-2007-45 for the placing on the market of herbicide-tolerant, high-oleic acid, genetically modified soybean 305423 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Pioneer. EFSA Journal, 11(12):3499.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on application EFSA-GMO-NL-2011-93 for the placing on the market of the herbicide-tolerant genetically modified soybean MON 87708 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 11(10):3355.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne (2013). Scientific Opinion on application EFSA-GMO-NL-2011-97 for the placing on the market of insect-resistant and herbicide-tolerant genetically modified cotton T304-40 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Bayer CropScience AG. EFSA Journal, 11(6):3251.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on application EFSA-GMO-UK-2007-41 for the placing on the market of herbicide-tolerant genetically modified cotton MON 88913 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 11(7):3311.

Arpaia, Salvatore; Birch, Nicholas; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on the annual Post-Market Environmental Monitoring (PMEM) report from BASF Plant Science Company GmbH on genetically modified potato EH92-527-1 in 2012. EFSA Journal, 11(10):3445.

Arpaia, Salvatore; Birch, Nicholas; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific Opinion on the annual Post-Market Environmental Monitoring (PMEM) report from Monsanto Europe S.A. on the cultivation of genetically modified maize MON 810 in 2011. EFSA Journal, 11(12):3500.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Scientific opinion on applications EFSA-GMO-RX-T25 and EFSA-GMO-NL-2007-46 for the renewal of authorisation of maize T25, and for the placing on the market of herbicide-tolerant genetically modified maize T25, both for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Bayer CropScience AG. EFSA Journal, 11(10):3356.

Margot, H; Sägesser, G; Zweifel, C; Stephan, Roger (2013). Short communication: Performance of a commercially available latex agglutination test kit for the identification of Salmonella. Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 64(3):75-77.

Hombach, Michael; Zbinden, Reinhard; Böttger, Erik C (2013). Standardisation of disk diffusion results for antibiotic susceptibility testing using the sirscan automated zone reader. BMC Microbiology, 13:225.

Chan, Yvonne G Y; Frankel, Matthew B; Dengler, Vanina; Schneewind, Olaf; Missiakas, Dominique (2013). Staphylococcus aureus mutants lacking the LytR-CpsA-Psr family of enzymes release cell wall teichoic acids into the extracellular medium. Journal of Bacteriology, 195(20):4650-4659.

Arpaia, Salvatore; Birch, Nicholas; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2013). Statement supplementing the environmental risk assessment conclusions and risk management recommendations on genetically modified insect-resistant maize 59122 for cultivation in the light of new scientific information on non-target organisms and regionally sensitive areas. EFSA Journal, 11(11):3443.

Veloso, Tiago Rafael; Zbinden, Andrea; Andreoni, Federica; Giddey, Marlyse; Vouillamoz, Jacques; Moreillon, Philippe; Zinkernagel, Annelies Sophie; Entenza, José Manuel (2013). Streptococcus tigurinus is highly virulent in a rat model of experimental endocarditis. International Journal of Medical Microbiology : IJMM, 303(8):498-504.

Hornok, Sándor; Csörgő, Tibor; de la Fuente, José; Gyuranecz, Miklós; Privigyei, Csaba; Meli, Marina L; Kreizinger, Zsuzsa; Gönczi, Enikő; Fernández de Mera, Isabel G; Hofmann-Lehmann, Regina (2013). Synanthropic birds associated with high prevalence of tick-borne rickettsiae and with the first detection of rickettsia aeschlimannii in Hungary. Vector Borne and Zoonotic Diseases, 13(2):77-83.

Jelcic, I; Aly, L; Binder, T M C; Jelcic, I; Bofill-Mas, S; Planas, R; Demina, V; Eiermann, T H; Weber, T; Girones, R; Sospedra, M; Martin, R (2013). T cell epitope mapping of JC polyoma virus-encoded proteome reveals reduced T cell responses in HLA-DRB1*04:01+ donors. Journal of Virology, 87(6):3393-3408.

Limenitakis, Julien; Oppenheim, Rebecca D; Creek, Darren J; Foth, Bernardo J; Barrett, Michael P; Soldati-Favre, Dominique (2013). The 2-methylcitrate cycle is implicated in the detoxification of propionate in Toxoplasma gondii. Molecular Microbiology, 87(4):894-908.

Seidl, Kati; Zinkernagel, Annelies S (2013). The MTT assay is a rapid and reliable quantitative method to assess Staphylococcus aureus induced endothelial cell damage. Journal of Microbiological Methods, 92(3):307-309.

Sass, Andrea M; Schmerk, Crystal; Agnoli, Kirsty; Norville, Phillip J; Eberl, Leo; Valvano, Miguel A; Mahenthiralingam, Eshwar (2013). The unexpected discovery of a novel low-oxygen-activated locus for the anoxic persistence of Burkholderia cenocepacia. The ISME journal, 7(8):1568-1581.

Novacco, M; Riond, B; Meli, M L; Grest, P; Hofmann-Lehmann, R (2013). Tissue sequestration of 'Candidatus Mycoplasma turicensis'. Veterinary Microbiology, 167(3-4):403-409.

Suppiger, Angela; Schmid, Nadine; Aguilar, Claudio; Pessi, Gabriella; Eberl, Leo (2013). Two quorum sensing systems control biofilm formation and virulence in members of the Burkholderia cepacia complex. Virulence, 4(5):400-409.

Mercer, Jason; Greber, Urs F (2013). Virus interactions with endocytic pathways in macrophages and dendritic cells. Trends in Microbiology, 21(8):380-388.

2012

Arpaia, Salvatore; Birch, Nicholas; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, H; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion on a request from the European Commission for the assessment of the scientific elements put forward by Hungary to support the prohibition for the placing on the market of GM potato EH92-527-1 for cultivation purposes in Hungary. EFSA Journal, 10(12):3321.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gjis; Lagiou, Pagona; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Oresna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion on an application (EFSA-GMO-NL-2012-107) for the placing on the market of maize MON 810 pollen under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 10(12):3022.

Arpaia, Salvatore; Birch, Nicholas; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare M; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific opinion on the annual Post-Market Environmental Monitoring (PMEM) report from BASF Plant Science Company GmbH on the cultivation of genetically modified potato EH92-527-1 in 2011. EFSA Journal, 10(12):3015.

Arpaia, Salvatore; Birch, Nicholas; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare M; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion supplementing the conclusions of the environmental risk assessment and risk management recommendations for the cultivation of the genetically modified insect resistant maize Bt11 and MON 810. EFSA Journal, 10(12):3016.

Arpaia, Salvatore; Birch, Nicholas; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion updating the risk assessment conclusions and risk management recommendations on the genetically modified insect resistant maize Bt11. EFSA Journal, 10(12):3018.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion updating the risk assessment conclusions and risk management recommendations on the genetically modified insect resistant maize MON 810. EFSA Journal, 10(12):3017.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lagiou, Pagona; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion on an application (EFSA-GMO-NL-2009-70) for the placing on the market of genetically modified drought tolerant maize MON 87460 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 10(11):2936.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lagiou, Pagona; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion updating the risk assessment conclusions and risk management recommendations on the genetically modified insect resistant maize 1507. EFSA Journal, 10(10):2933.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lagiou, Pagona; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare M; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion supplementing the conclusions of the environmental risk assessment and risk management recommendations on the genetically modified insect resistant maize 1507 for cultivation. EFSA Journal, 10(11):2934.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lagiou, Pagona; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion on application (EFSA-GMO-NL-2010-78) for the placing on the market of herbicide-tolerant, increased oleic acid genetically modified soybean MON 87705 for food and feed uses, import and processing under Regulation (EC) No 1829/2003 from Monsanto. EFSA Journal, 10(10):2909.

Jurgeit, Andreas; McDowell, Robert; Moese, Stefan; Meldrum, Eric; Schwendener, Reto; Greber, Urs F (2012). Niclosamide is a proton carrier and targets acidic endosomes with broad antiviral effects. PLoS Pathogens, 8(10):e1002976.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lagiou, Pagona; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific opinion addressing the safety assessment of plants developed using Zinc Finger Nuclease 3 and other site-directed Nucleases with similar function. EFSA Journal, 10(10):2943.

Noerrung, B; Collins, D; Budka, H; Hugas, M (2012). Risk assessment of biological hazards for consumer protection. EFSA Journal:1-8.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lagiou, Pagona; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion on a request from the European Commission for the assessment of the scientific elements put forward by Luxembourg to support the prohibition for the placing on the market of GM potato EH92-527-1 for cultivation purposes in Luxembourg. EFSA Journal, 10(9):2874.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gatham, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lagiou, Pagona; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion on a request from the European Commission related to the prolongation of prohibition of the placing on the market of genetically modified oilseed rape event GT73 for import, processing and feed uses in Austria. EFSA Journal, 10(9):2876.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gathmann, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lagiou, Pagona; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific Opinion on a request from the European Commission related to the prolongation of prohibition of the placing on the market of genetically modified oilseed rape events Ms8, Rf3 and Ms8 x Rf3 for import, processing and feed uses in Austria. EFSA Journal, 10(9):2878.

Arpaia, Salvatore; Birch, Andrew N E; Chesson, Andrew; du Jardin, Patrick; Gatham, Achim; Gropp, Jürgen; Herman, Lieve; Hoen-Sorteberg, Hilde-Gunn; Jones, Huw; Kiss, Jozsef; Kleter, Gijs; Lagiou, Pagona; Lovik, Martinus; Messéan, Antoine; Naegeli, Hanspeter; Nielsen, Kaare Magne; Ovesna, Jaroslava; Perry, Joe; Rostoks, Nils; Tebbe, Christoph (2012). Scientific opinion on a request from the European Commission related to the safeguard clause notified by Greece on genetically modified maize MON 810 according to Article 23 of Directive 2001/18/EC. EFSA Journal, 10(9):2877.

Schliehe, Christopher; Bitzer, Annegret; van den Broek, Maries; Groettrup, Marcus (2012). Stable antigen is most effective for eliciting CD8+ T-cell responses after DNA vaccination and infection with recombinant vaccinia virus in vivo. Journal of Virology, 86(18):9782-9793.

Schirrmeister, Bettina E; Dalquen, Daniel A; Anisimova, Maria; Bagheri, Homayoun C (2012). Gene copy number variation and its significance in cyanobacterial phylogeny. BMC Microbiology, 12:177.

Filippini, Manuela; Qi, Weihong; Jaenicke, Sebastian; Goesmann, Alexander; Smits, Theo H M; Bagheri, Homayoun C (2012). Genome sequence of the filamentous bacterium Fibrisoma limi BUZ 3T. Journal of Bacteriology, 16(194):4445.

Yakimovich, A; Gumpert, H; Burckhardt, C J; Lutschg, V A; Jurgeit, A; Sbalzarini, I F; Greber, U F (2012). Cell-free transmission of human adenovirus by passive mass transfer in cell culture simulated in a computer model. Journal of Virology, 86(18):10123-10137.

Schubert, Mario; Bleuler-Martinez, Silvia; Butschi, Alex; Wälti, Martin A; Egloff, Pascal; Stutz, Katrin; Yan, Shi; Wilson, Iain B H; Hengartner, Michael O; Aebi, Markus; Allain, Frédéric H-T; Künzler, Markus (2012). Plasticity of the β-Trefoil Protein Fold in the Recognition and Control of Invertebrate Predators and Parasites by a Fungal Defence System. PLoS Pathogens, 8(5):e1002706.

Dieckmann, Sarah M; Hoelzle, Katharina; Dieckmann, Michael P; Straube, Iris; Hofmann-Lehmann, Regina; Hoelzle, Ludwig E (2012). Occurrence of hemotrophic mycoplasmas in horses with correlation to hematological findings. Veterinary Microbiology, 160(1-2):43-52.

Günther, V; Strassen, T; Lindert, U; Dagani, P; Waldvogel, D; Georgiev, O; Schaffner, W; Bethge, T (2012). Simian virus 40 (SV40) strains with novel properties generated by replacing the viral enhancer with synthetic oligonucleotides. Journal of Virology, 86(6):3135-3142.

Ruhl, Marianne; Chhatwal, Patrick; Strathmann, Heiko; Kuntzen, Thomas; Bankwitz, Dorothea; Skibbe, Kathrin; Walker, Andreas; Heinemann, Falko M; Horn, Peter A; Allen, Todd M; Hoffmann, Daniel; Pietschmann, Thomas; Timm, Jörg (2012). Escape from a dominant HLA-B*15-restricted CD8+ T cell response against hepatitis C virus requires compensatory mutations outside the epitope. Journal of Virology, 86(2):991-1000.

Schmidt-Posthaus, H; Polkinghorne, A; Nufer, L; Schifferli, A; Zimmermann, D R; Segner, H; Steiner, P; Vaughan, L (2012). A natural freshwater origin for two chlamydial species, Candidatus Piscichlamydia salmonis and Candidatus Clavochlamydia salmonicola, causing mixed infections in wild brown trout (Salmo trutta). Environmental Microbiology, 14(8):2048-2057.

Medlock, J M; Hansford, K M; Schaffner, Francis; Versteirt, V; Hendrickx, G; Zeller, H; Van Bortel, W (2012). A review of the invasive mosquitoes in Europe: Ecology, public health risks, and control options. Vector-Borne and Zoonotic Diseases, 12(6):435-447.

Johler, Sophia; Moser, M; Corti, S; Stephan, Roger (2012). A β-galactosidase negative E. coli leading to atypical colonies on RAPID’E.coli 2 agar. Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 63(6):179-181.

Vogel, R; Seyffert, M; Strasser, R; de Oliveira, A P; Dresch, C; Glauser, D L; Jolinon, N; Salvetti, A; Weitzman, M D; Fraefel, C; Ackermann, M (2012). Adeno-associated virus type 2 modulates the host DNA damage response induced by herpes simplex virus type 1 during co-infection. Journal of Virology, 86(1):143-155.

Ammann, Thomas W; Gmür, Rudolf; Thurnheer, Thomas (2012). Advancement of the 10-species subgingival Zurich Biofilm model by examining different nutritional conditions and defining the structure of the in vitro biofilms. BMC Microbiology, 12:227.

Ascher, Judith; Sartori, G; Graefe, U; Thornton, B; Ceccherini, M T; Pietramellara, G; Egli, Markus (2012). Are humus forms, mesofauna and microflora in subalpine forest soils sensitive to thermal conditions? Biology and Fertility of Soils, 48(6):709-725.

Trinh, H V; Lesage, G; Chennamparampil, V; Vollenweider, B; Burckhardt, C J; Schauer, S; Havenga, M; Greber, U F; Hemmi, S (2012). Avidity binding of human adenovirus serotypes 3 and 7 to the membrane cofactor CD46 triggers infection. Journal of Virology, 86(3):1623-1637.

Althaus, D; Hofer, E; Corti, S; Julmi, A; Stephan, Roger (2012). Bacteriological survey of ready-to-eat lettuce, fresh-cut fruits and sprouts collected from the Swiss market. Journal of Food Protection, 75(7):1338-1341.

Abela, Irene A; Berlinger, Livia; Schanz, Merle; Reynell, Lucy; Günthard, Huldrych F; Rusert, Peter; Trkola, Alexandra (2012). Cell-cell transmission enables HIV-1 to evade inhibition by potent CD4bs directed antibodies. PLoS Pathogens, 8(4):e1002634.

Beerenwinkel, Niko; Günthard, Huldrych F; Roth, Volker; Metzner, Karin J (2012). Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data. Frontiers in Microbiology, 3:329.

Di Palma, Stefano; Brunetti, Barbara; Doherr, Marcus G; Forster, Ursula; Hilbe, Monika; Zurbriggen, Andreas; Vandevelde, Marc; Oevermann, Anna (2012). Comparative spatiotemporal analysis of the intrathecal immune response in natural listeric rhombencephalitis of cattle and small ruminants. Comparative Immunology, Microbiology & Infectious Diseases, 35(5):429-441.

Uchiyama, Satoshi; Andreoni, Federica; Schuepbach, Reto A; Nizet, Victor; Zinkernagel, Annelies S (2012). DNase Sda1 allows invasive M1T1 Group A Streptococcus to prevent TLR9-dependent recognition. PLoS Pathogens, 8(6):e1002736.

Dengler, Vanina; Meier, Patricia Stutzmann; Heusser, Ronald; Kupferschmied, Peter; Fazekas, Judit; Friebe, Sarah; Staufer, Sibylle Burger; Majcherczyk, Paul A; Moreillon, Philippe; Berger-Bächi, Brigitte; McCallum, Nadine (2012). Deletion of hypothetical wall teichoic acid ligases in Staphylococcus aureus activates the cell wall stress response. FEMS Microbiology Letters, 333(2):109-120.

Bonke, R; Wacheck, S; Stüber, E; Stephan, Roger; Fredriksson-Ahomaa, M (2012). Detection of Salmonella spp. in small ruminants using immunoassy and PCR. Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 63(6):175-178.

Brengi, Silvina P; O'Brien, S B; Pichel, M; Iversen, Carol; Arduino, M; Binsztein, N; Jensen, B; Pagotto, F; Ribot, Efrain M; Stephan, Roger; Cernela, N; Cooper, K; Fanning, S (2012). Development and validation of a PulseNet standardized protocol for sub-typing isolates of Cronobacter species. Foodborne Pathogens and Disease, 9(9):861-867.

Sais, Giovanni; Wyler, Stephen; Hudolin, Tvrtko; Banzola, Irina; Mengus, Chantal; Bubendorf, Lukas; Wild, Peter J; Hirsch, Hans H; Sulser, Tullio; Spagnoli, Giulio C; Provenzano, Maurizio (2012). Differential patterns of Large Tumor Antigen specific immune responsiveness in patients with BK polyomavirus positive prostate cancer or benign prostatic hyperplasia. Journal of Virology, 86(16):8461-8471.

Bostanci, Nagihan; Belibasakis, Georgios N (2012). Doxycycline inhibits TREM-1 induction by Porphyromonas gingivalis. FEMS Immunology and Medical Microbiology, 66(1):37-44.

Knapp, J; Staebler, S; Bart, J M; Stien, A; Yoccoz, N G; Drögemüller, C; Gottstein, B; Deplazes, P (2012). Echinococcus multilocularis in Svalbard, Norway: Microsatellite genotyping to investigate the origin of a highly focal contamination. Infection, Genetics and Evolution, 12(6):1270-1274.

Lange, C E; Ackermann, M; Favrot, C; Tobler, K (2012). Entire genomic sequence of novel canine papillomavirus type 13. Journal of Virology, 86(18):10226-10227.

Agnoli, Kirsty; Schwager, Stephan; Uehlinger, Susanne; Vergunst, Annette; Viteri, Duber F; Nguyen, David T; Sokol, Pamela A; Carlier, Aurélien; Eberl, Leo (2012). Exposing the third chromosome of Burkholderia cepacia complex strains as a virulence plasmid. Molecular Microbiology, 83(2):362-378.

Hornok, S; Kovács, R; Meli, Marina L; Gönczi, E; Hofmann-Lehmann, R; Kontschán, J; Gyuranecz, M; Dán, A; Molnár, V (2012). First detection of bartonellae in a broad range of bat ectoparasites. Veterinary Microbiology, 159(3-4):541-543.

Aguzzi, Adriano; Zhu, Caihong (2012). Five questions on prion diseases. PLoS Pathogens, 8(5):e1002651.

Bargielowski, Irka; Kaufmann, Christian; Alphey, Luke; Reiter, Paul; Koella, Jacob (2012). Flight performance and teneral energy reserves of two genetically-modified and one wild-type strain of the yellow fever mosquito Aedes aegypti. Vector Borne and Zoonotic Diseases, 12(12):1053-1058.

Tschumi, Andreas; Grau, Thomas; Albrecht, Dirk; Rezwan, Mandana; Antelmann, Haike; Sander, Peter (2012). Functional analyses of mycobacterial lipoprotein diacylglyceryl transferase and comparative secretome analysis of a mycobacterial lgt mutant. Journal of Bacteriology, 194(15):3938-3949.

Barker, Emily N; Darby, Alistair C; Helps, Chris R; Peters, Iain R; Hughes, Margaret A; Radford, Alan D; Novacco, Marilisa; Boretti, Felicitas S; Hofmann-Lehmann, Regina; Tasker, Séverine (2012). Genome sequence for "Candidatus Mycoplasma haemominutum," a low-pathogenicity hemoplasma species. Journal of Bacteriology, 194(4):905-906.

Filippini, Manuela; Qi, Weihong; Blom, Jochen; Goesmann, Alexander; Smits, Theo H M; Bagheri, Homayoun C (2012). Genome sequence of Fibrella aestuarina BUZ 2(T), a filamentous marine bacterium. Journal of Bacteriology, 194(13):3555.

Oertli, Mathias; Müller, Anne (2012). Helicobacter pylori targets dendritic cells to induce immune tolerance, promote persistence and confer protection against allergic asthma. Gut Microbes, 3(6):566-571.

Novacco, Marilisa; Wolf-Jäckel, Godelind; Riond, Barbara; Hofmann-Lehmann, Regina (2012). Humoral immune response to a recombinant hemoplasma antigen in experimental 'Candidatus Mycoplasma turicensis' infection. Veterinary Microbiology, 157(3-4):464-470.

Daum, Janine M; Davis, Leyla R; Bigler, Laurent; Woodhams, Doug C (2012). Hybrid advantage in skin peptide immune defenses of water frogs (Pelophylax esculentus) at risk from emerging pathogens. Infection, Genetics and Evolution, 12(8):1854-1864.

Inhülsen, Silja; Aguilar, Claudio; Schmid, Nadine; Suppiger, Angela; Riedel, Kathrin; Eberl, Leo (2012). Identification of functions linking quorum sensing with biofilm formation inBurkholderia cenocepaciaH111. MicrobiologyOpen, 1(2):225-242.

Lehner, Angelika; Fricker-Feer, C; Stephan, Roger (2012). Identification of the recently described Cronobacter condimenti by a rpoB based PCR system. Journal of Medical Microbiology, 61(Pt 7):1034-1035.

Mekker, Andrea; Tchang, Vincent S; Haeberli, Lea; Oxenius, Annette; Trkola, Alexandra; Karrer, Urs (2012). Immune senescence: relative contributions of age and cytomegalovirus infection. PLoS Pathogens, 8(8):e1002850.

Barat, Somedutta; Willer, Yvonne; Rizos, Konstantin; Claudi, Beatrice; Mazé, Alain; Schemmer, Anne K; Kirchhoff, Dennis; Schmidt, Alexander; Burton, Neil; Bumann, Dirk (2012). Immunity to Intracellular Salmonella Depends on Surface-associated Antigens. PLoS Pathogens, 8(10):e1002966.

Houghton, Joanna; Townsend, Carolin; Williams, Alan R; Rodgers, Angela; Rand, Lucinda; Walker, K Barry; Böttger, Erik C; Springer, Burkhard; Davis, Elaine O (2012). Important role for Mycobacterium tuberculosis UvrD1 in pathogenesis and persistence apart from its function in nucleotide excision repair. Journal of Bacteriology, 194(11):2916-2923.

Peng, S; Stephan, Roger; Hummerjohann, J; Blanco, J; Zweifel, C (2012). In vitro characterization of Shiga toxin-producing and generic Escherichia coli in respect of cheese-production relevant stresses. Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 63(5):136-141.

Leitner, Sonja; Wanek, Wolfgang; Wild, Birgit; Haemmerle, Ieda; Kohl, Lukas; Keiblinger, Katharina M; Zechmeister-Boltenstern, Sophie; Richter, Andreas (2012). Influence of litter chemistry and stoichiometry on glucan depolymerization during decomposition of beech (Fagus sylvatica L.) litter. Soil Biology and Biochemistry, 50(6):174-187.

Felder, Kathrin M; Carranza, Paula M; Gehrig, Peter M; Roschitzki, Bernd; Barkow-Oesterreicher, Simon; Hoelzle, Katharina; Riedel, Katharina; Kube, Michael; Hoelzle, Ludwig E (2012). Insights into the gene expression profile of uncultivable hemotrophic Mycoplasma suis during acute infection, obtained using proteome analysis. Journal of Bacteriology, 194(6):1505-1514.

Klockgether, Jens; Miethke, Norbert; Kubesch, Peter; Bohn, Yu-Sing; Brockhausen, Inka; Cramer, Nina; Eberl, Leo; Greipel, Joachim; Herrmann, Christian; Herrmann, Susanne; Horatzek, Sonja; Lingner, Meike; Luciano, Liliana; Salunkhe, Prabhakar; Schomburg, Dietmar; Wehsling, Maria; Wiehlmann, Lutz; Davenport, Colin F; Tümmler, Burkhard (2012). Intraclonal diversity of the Pseudomonas aeruginosa cystic fibrosis airway isolates TBCF10839 and TBCF121838: distinct signatures of transcriptome, proteome, metabolome, adherence and pathogenicity despite an almost identical genome sequence. Environmental Microbiology, 15(1):191-210.

Schoster, Angelika; Staempfli, Henry Rolf; Arroyo, Luis Guillermo; Reid-Smith, R J; Janecko, N; Shewen, P E; Weese, Jeffrey Scott (2012). Longitudinal study of Clostridium difficile and antimicrobial susceptibility of Escherichia coli in healthy horses in a community setting. Veterinary Microbiology, 159(3-4):364-370.

O'Connor, Tracy; Frei, Nathalie; Sponarova, Jana; Schwarz, Petra; Heikenwalder, Mathias; Aguzzi, Adriano (2012). Lymphotoxin, but Not TNF, Is Required for Prion Invasion of Lymph Nodes. PLoS Pathogens, 8(8):e1002867.

Knief, C; Delmotte, N; Chaffron, S; Stark, M; Innerebner, G; Wassmann, R; von Mering, C; Vorholt, J A (2012). Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice. ISME Journal, 6(7):1378-1390.

Gasser, R B; Jabbar, A; Mohandas, N; Schnyder, M; Deplazes, P; Littlewood, D T J; Jex, A R (2012). Mitochondrial genome of Angiostrongylus vasorum: Comparison with congeners and implications for studying the population genetics and epidemiology of this parasite. Infection, Genetics and Evolution, 12(8):1884-1891.

Sirgel, F A; Tait, M; Warren, R M; Streicher, E M; Böttger, E C; Van Helden, P D; Gey Van Pittius, N C; Coetzee, G; Hoosain, E Y; Chabula-Nxiweni, M; Hayes, C; Victor, T C; Trollip, A (2012). Mutations in the rrs A1401G gene and phenotypic resistance to amikacin and capreomycin in mycobacterium tuberculosis. Microbial Drug Resistance, 18(2):193-197.

Schreiner, Sabrina A; Hoelzle, Katharina; Hofmann-Lehmann, Regina; Hamburger, Anja; Wittenbrink, Max M; Kramer, Manuela M; Sokoli, Albina; Felder, Kathrin M; Groebel, Katrin; Hoelzle, Ludwig E (2012). Nanotransformation of the haemotrophic Mycoplasma suis during in vitro cultivation attempts using modified cell free Mycoplasma media. Veterinary Microbiology, 160(1-2):227-232.

Misselwitz, Benjamin; Barrett, Naomi; Kreibich, Saskia; Vonaesch, Pascale; Andritschke, Daniel; Rout, Samuel; Weidner, Kerstin; Sormaz, Milos; Songhet, Pascal; Horvath, Peter; Chabria, Mamta; Vogel, Viola; Spori, Doris M; Jenny, Patrick; Hardt, Wolf-Dietrich (2012). Near surface swimming of Salmonella Typhimurium explains target-site selection and cooperative invasion. PLoS Pathogens, 8(7):e1002810.

Sarno, E; Stephan, Roger; Zweifel, C (2012). Occurrence of Erysiolpelothrix spp., Salmonella spp. and Listeria spp. in tonsils of healthy Swiss pigs at slaughter. Archiv für Lebensmittelhygiene = Journal of Food Safety and Food Quality, 63(1):11-15.

Schulthess, Bettina; Bloes, Dominik A; Berger-Bächi, Brigitte (2012). Opposing roles of σB and σB-controlled SpoVG in the global regulation of esxA in Staphylococcus aureus. BMC Microbiology, 12:17.

Tracy, Sean I; Kakalacheva, Kristina; Lünemann, Jan D; Luzuriaga, Katherine; Middeldorp, Jaap; Thorley-Lawson, David A (2012). Persistence of Epstein-Barr virus in self-reactive memory B cells. Journal of Virology, 86(22):12330-12340.

Mattila, M; Somervuo, P; Rattei, T; Korkeala, H; Stephan, Roger; Tasara, T (2012). Phenotypic and transcriptomic analyses of sigma L-dependent characteristics in Listeria monocytogenes EGDe. Food Microbiology, 32(1):152-164.

Bostanci, Nagihan; Belibasakis, Georgios N (2012). Porphyromonas gingivalis: an invasive and evasive opportunistic oral pathogen. FEMS Microbiology Letters, 333(1):1-9.

Gyuranecz, Miklós; Dénes, Béla; Hornok, Sándor; Kovács, Péter; Horváth, Gábor; Jurkovich, Viktor; Varga, Tamás; Hajtós, István; Szabó, Réka; Magyar, Tibor; Vass, Nóra; Hofmann-Lehmann, Regina; Erdélyi, Károly; Bhide, Mangesh; Dán, Ádám (2012). Prevalence of Coxiella burnetii in Hungary: screening of dairy cows, sheep, commercial milk samples, and ticks. Vector Borne and Zoonotic Diseases, 12(8):650-653.

Falsig, Jeppe; Sonati, Tiziana; Herrmann, Uli S; Saban, Dino; Li, Bei; Arroyo, Karina; Ballmer, Boris; Liberski, Pawel P; Aguzzi, Adriano (2012). Prion pathogenesis is faithfully reproduced in cerebellar organotypic slice cultures. PLoS Pathogens, 8(11):e1002985.

Wolf-Jäckel, Godelind A; Cattori, Valentino; Geret, Catrina P; Novacco, Marilisa; Meli, Marina L; Riond, Barbara; Boretti, Felicitas S; Lutz, Hans; Hofmann-Lehmann, Regina (2012). Quantification of the humoral immune response and hemoplasma blood and tissue loads in cats coinfected with 'Candidatus Mycoplasma haemominutum' and feline leukemia virus. Microbial Pathogenesis, 53(2):74-80.

Borel, Nicole; Regenscheit, N; Di Francesco, A; Donati, M; Markov, J; Masserey, Y; Pospischil, A (2012). Selection for tetracycline-resistant Chlamydia suis in treated pigs. Veterinary Microbiology, 156(1-2):143-146.

Wacheck, S; Sarno, E; Märtlbauer, E; Zweifel, C (2012). Seroprevalence of anti-HEV and anti-Salmonella antibodies in pigs at slaughter in Switzerland. Journal of Food Protection, 75(8):1483-1485.

Obwegeser, T; Stephan, Roger; Hofer, E; Zweifel, C (2012). Shedding of foodborne pathogens and microbial carcass contamination of hunted wild ruminants. Veterinary Microbiology, 159(1-2):149-154.

Obwegeser, Tobias. Shedding of foodborne pathogens and microbial carcass contamination of hunted wild ruminants. 2012, University of Zurich, Vetsuisse Faculty.

Hofer, E; Cernela, N; Stephan, Roger (2012). Shiga toxin subtypes associated with Shiga toxin-producing Escherichia coli strains isolated from red deer, roe deer, chamois and ibex. Foodborne Pathogens and Disease, 9(9):792-795.

Keiblinger, Katharina M; Wilhartitz, Inés C; Schneider, Thomas; Roschitzki, Bernd; Schmid, Emanuel; Eberl, Leo; Riedel, Kathrin; Zechmeister-Boltenstern, Sophie (2012). Soil metaproteomics – Comparative evaluation of protein extraction protocols. Soil Biology and Biochemistry, 54(15-10):14-24.

Schlagenhauf, Patricia; Petersen, Eskild (2012). Standby emergency treatment of malaria in travelers: experience to date and new developments. Expert Review of Anti-infective Therapy, 10(5):537-546.

Zbinden, Andrea; Mueller, Nicolas J; Tarr, Philip E; Spröer, Cathrin; Keller, Peter M; Bloemberg, Guido V (2012). Streptococcus tigurinus sp. nov., isolated from blood of patients with endocarditis, meningitis and spondylodiscitis. International Journal of Systematic and Evolutionary Microbiology, 62(Pt 12):2941-2945.

Arnold, Isabelle C; Hitzler, Iris; Müller, Anne (2012). The Immunomodulatory Properties of Helicobacter pylori Confer Protection Against Allergic and Chronic Inflammatory Disorders. Frontiers in Cellular and Infection Microbiology:2:10.

Carlier, Aurelien L; Eberl, Leo (2012). The eroded genome of a Psychotria leaf symbiont: hypotheses about lifestyle and interactions with its plant host. Environmental Microbiology, 14(10):2757-2769.

Duncan, A J; Gunn, G J; Lewis, F I; Umstatter, C; Humphry, R W (2012). The influence of empirical contact networks on modelling diseases in cattle. Epidemics, 4(3):117-123.

Baumgartner, Angelica; Thurnheer, Thomas; Lüthi-Schaller, Helga; Gmür, Rudolf; Belibasakis, Georgios N (2012). The phylum Synergistetes in gingivitis and necrotizing ulcerative gingivitis. Journal of Medical Microbiology, 61(Pt 11):1600-1609.

Schreiner, S A; Sokoli, A; Felder, K M; Wittenbrink, M M; Schwarzenbach, S; Guhl, B; Hoelzle, K; Hoelzle, L E (2012). The surface-localised α-enolase of Mycoplasma suis is an adhesion protein. Veterinary Microbiology, 156(1-2):88-95.

Schneider, Thomas; Keiblinger, Katharina M; Schmid, Emanuel; Sterflinger-Gleixner, Katja; Ellersdorfer, Günther; Roschitzki, Bernd; Richter, Andreas; Eberl, Leo; Zechmeister-Boltenstern, Sophie; Riedel, Kathrin (2012). Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions. The ISME journal, 6(9):1749-1762.

Henn, Matthew R; Boutwell, Christian L; Charlebois, Patrick; Lennon, Niall J; Power, Karen A; Macalalad, Alexander R; Berlin, Aaron M; Malboeuf, Christine M; Ryan, Elizabeth M; Gnerre, Sante; Zody, Michael C; Erlich, Rachel L; Green, Lisa M; Berical, Andrew; Wang, Yaoyu; Casali, Monica; Streeck, Hendrik; Bloom, Allyson K; Dudek, Tim; Tully, Damien; Newman, Ruchi; Axten, Karen L; Gladden, Adrianne D; Battis, Laura; Kemper, Michael; Zeng, Qiandong; Shea, Terrance P; Gujja, Sharvari; Zedlack, Carmen; Gasser, Olivier; Brander, Christian; Hess, Christoph; Günthard, Huldrych F; Brumme, Zabrina L; Brumme, Chanson J; Bazner, Suzane; Rychert, Jenna; Tinsley, Jake P; Mayer, Ken H; Rosenberg, Eric; Pereyra, Florencia; Levin, Joshua Z; Young, Sarah K; Jessen, Heiko; Altfeld, Marcus; Birren, Bruce W; Walker, Bruce D; Allen, Todd M (2012). Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection. PLoS Pathogens, 8(3):e1002529.

2011

Strunze, S; Engelke, M F; Wang, I-H; Puntener, D; Boucke, K; Schleich, S; Way, M; Schoenenberger, P; Burckhardt, C J; Greber, U F (2011). Kinesin-1-mediated capsid disassembly and disruption of the nuclear pore complex promote virus infection. Cell Host & Microbe, 10(3):210-223.

Villaudy, J; Wencker, M; Gadot, N; Gillet, N A; Scoazec, J Y; Gazzolo, Louis; Manz, M G; Bangham, C R M; Dodon, M D (2011). HTLV-1 propels thymic human T cell development in "human immune system" Rag2⁻/⁻ gamma c⁻/⁻ mice. PLoS Pathogens, 7(9):e1002231.

Wisskirchen, C; Ludersdorfer, T H; Müller, D A; Moritz, E; Pavlovic, J (2011). The cellular RNA helicase UAP56 is required for prevention of double-stranded RNA formation during influenza A virus infection. Journal of Virology, 85(17):8646-8655.

Salcher, M M; Pernthaler, J; Posch, T (2011). Seasonal bloom dynamics and ecophysiology of the freshwater sister clade of SAR11 bacteria 'that rule the waves' (LD12). ISME Journal, 5(8):1242-1252.

Dewals, B; Myster, F; Palmeira, L; Gillet, L; Ackermann, M; Vanderplasschen, A (2011). Ex vivo bioluminescence detection of alcelaphine herpesvirus 1 infection during malignant catarrhal fever. Journal of Virology, 85(14):6941-6954.

Lalonde, M S; Lobritz, M A; Ratcliff, A; Chamanian, M; Athanassiou, Z; Tyagi, M; Wong, J; Robinson, J A; Karn, J; Varani, G; Arts, Eric J (2011). Inhibition of both HIV-1 reverse transcription and gene expression by a cyclic peptide that binds the Tat-transactivating response element (TAR) RNA. PLoS Pathogens, 7(5):e1002038.

Hughes, David J; Kipar, Anja; Leeming, Gail H; Bennett, Elaine; Howarth, Deborah; Cummerson, Joanne A; Papoula-Pereira, Rita; Flanagan, Brian F; Sample, Jeffery T; Stewart, James P (2011). Chemokine binding protein M3 of murine gammaherpesvirus 68 modulates the host response to infection in a natural host. PLoS Pathogens, 7(3):e1001321.

Wright, J; Bellissimi, E; de Hulster, E; Wagner, A; Pronk, J T; van Maris, A J A (2011). Batch and continuous culture-based selection strategies for acetic acid tolerance in xylose-fermenting Saccharomyces cerevisiae. FEMS Yeast Research, 11(3):299-306.

Segonzac, Cécile; Zipfel, Cyril (2011). Activation of plant pattern-recognition receptors by bacteria. Current Opinion in Microbiology, 14(1):54-61.

Filippini, M; Svercel, M; Laczko, E; Kaech, A; Ziegler, U; Bagheri, Homayoun C (2011). Fibrella aestuarina gen. nov., sp. nov., a filamentous bacterium of the family Cytophagaceae isolated from a tidal flat, and emended description of the genus Rudanella Weon et al. 2008. International Journal of Systematic and Evolutionary Microbiology, 61(Pt 1):184-189.

Huberts, Daphne H E W; Niebel, Bastian; Heinemann, Matthias (2011). A flux-sensing mechanism could regulate the switch between respiration and fermentation. FEMS Yeast Research, 12(2):118-128.

Haybaeck, J; Heikenwalder, M; Klevenz, B; Schwarz, P; Margalith, I; Bridel, C; Mertz, Kirsten; Zirdum, E; Petsch, B; Fuchs, T J; Stitz, L; Aguzzi, A (2011). Aerosols transmit prions to immunocompetent and immunodeficient mice. PLoS Pathogens, 7(1):e1001257.

Bürki, S; Vilei, E M; Frey, J; Wittenbrink, M M (2011). Allelic variations of the nox gene of Brachyspira pilosicoli impair its detection by qPCR. Veterinary Microbiology, 149(1-2):291-292.

Peng, S; Tasara, T; Hummerjohann, J; Stephan, R (2011). An overview of molecular stress response mechanisms in Escherichia coli contributing to survival of STEC during the raw milk cheese production. Journal of Food Protection, 74(5):849-864.

Duc, L; Neuenschwander, S; Rehrauer, H; Zeyer, J (2011). Application of a nifH microarray to assess the impact of environmental factors on free-living diazotrophs in a glacier forefield. Canadian Journal of Microbiology, 57(2):105-114.

Kouyos, R D; von Wyl, V; Hinkley, T; Petropoulos, C J; Haddad, M; Whitcomb, J M; Böni, J; Yerly, S; Cellerai, C; Klimkait, T; Günthard, H F; Bonhoeffer, S (2011). Assessing predicted HIV-1 replicative capacity in a clinical setting. PLoS Pathogens, 7(11):e1002321.

Dorodnikov, Maxim; Kuzyakov, Yakov; Fangmeier, Andreas; Wiesenberg, Guido L B (2011). C and N in soil organic matter density fractions under elevated atmospheric CO₂: Turnover vs. stabilization. Soil Biology and Biochemistry, 43(3):579-589.

McElroy, K; Mouton, L; Du Pasquier, L; Qi, W; Ebert, D (2011). Characterisation of a large family of polymorphic collagen-like proteins in the endospore-forming bacterium Pasteuria ramosa. Research in Microbiology, 162(7):701-714.

Abiven, S; Andreoli, R (2011). Charcoal does not change the decomposition rate of mixed litters in a mineral cambisol: a controlled conditions study. Biology and Fertility of Soils, 47(1):111-114.

Schneider, M P W; Lehmann, J; Schmidt, M W I (2011). Charcoal quality does not change over a century in a tropical agro-ecosystem. Soil Biology and Biochemistry, 43(9):1992-1994.

Polkinghorne, A; Vaughan, L (2011). Chlamydia abortus YhbZ, a truncated Obg family GTPase, associates with the Escherichia coli large ribosomal subunit. Microbial Pathogenesis, 50(3-4):200-206.

Oberhaensli, S; Parlange, F; Buchmann, J P; Jenny, F H; Abbott, J C; Burgis, T A; Spanu, P D; Keller, B; Wicker, T (2011). Comparative sequence analysis of wheat and barley powdery mildew fungi reveals gene colinearity, dates divergence and indicates host-pathogen co-evolution. Fungal Genetics And Biology, 48(3):327 - 334.

Johler, Sophia; Leyer, F; Stephan, Roger (2011). Comparison of virulence and antibiotic resistance genes of food poisoning outbreak isolates of Staphylococcus aureus with isolates obtained from bovine mastitis milk and pig carcasses. Journal of Food Protection, 74(11):1852-1859.

Stephan, Roger; Lehner, Angelika; Tischler, P; Rattei, T (2011). Complete genome sequence of Cronobacter turicensis LMG 23827, a food-borne pathogen causing deaths in neonates. Journal of Bacteriology, 139(1):309-310.

Oehlerking, J; Kube, M; Felder, K M; Matter, D; Wittenbrink, M M; Schwarzenbach, S; Kramer, M M; Hoelzle, K; Hoelzle, L E (2011). Complete genome sequence of the hemotrophic Mycoplasma suis strain KI3806. Journal of Bacteriology, 193(9):2369-2370.

Quiblier, C; Zinkernagel, A S; Schuepbach, R A; Berger-Bächi, B; Senn, M M (2011). Contribution of SecDF to Staphylococcus aureus resistance and expression of virulence factors. BMC Microbiology, 11:72.

Khaiseb, S; Sydler, T; Zimmermann, D R; Pospischil, A; Sidler, X; Brugnera, E (2011). Coreplication of the major genotype group members of porcine circovirus type 2 as a prerequisite to coevolution may explain the variable disease manifestations. Journal of Virology, 85(21):11111-11120.

Stephan, Roger (2011). Cronobacter spp. In: Baumgart, J; Becker, B; Stephan, Roger. Mikrobiologische Untersuchung von Lebensmitteln (Loseblatt-Ausg. 2011). Hamburg, DE: Behr, Ordner 6.

Brandes Ammann, A; Kölle, L; Brandl, H (2011). Detection of bacterial endospores in soil by terbium fluorescence. International Journal of Microbiology, 2011:435281.

Peters, I R; Helps, C R; Willi, Barbara; Hofmann-Lehmann, R; Gruffydd-Jones, T J; Day, M J; Tasker, S (2011). Detection of feline haemoplasma species in experimental infections by in-situ hybridisation. Microbial Pathogenesis, 50(2):94-99.

Lehner, Angelika; Fricker-Feer, C; Stephan, Roger (2011). Detection, identification and typing methods for Cronobacter spp. - a review. Journal of Food Safety and Food Quality, 62(5):145-148.

Fredriksson-Ahomaa, M; Wacheck, S; Bonke, R; Stephan, Roger (2011). Different enteropathogenic Yersinia strains found in wild boars and domestic pigs. Foodborne Pathogens and Disease, 8(6):733-736.

Widdick, D A; Hicks, M G; Thompson, B J; Tschumi, A; Chandra, G; Sutcliffe, I C; Brülle, J K; Sander, P; Palmer, T; Hutchings, M I (2011). Dissecting the complete lipoprotein biogenesis pathway in Streptomyces scabies. Molecular Microbiology, 80(5):1395-1412.

Burckhardt, C J; Suomalainen, M; Schoenenberger, P; Boucke, K; Hemmi, S; Greber, U F (2011). Drifting Motions of the Adenovirus Receptor CAR and Immobile Integrins Initiate Virus Uncoating and Membrane Lytic Protein Exposure. Cell Host & Microbe, 10(2):105-117.

Stiehl-Braun, P A; Powlson, D S; Poulton, P R; Niklaus, P A (2011). Effects of N fertilizers and liming on the micro-scale distribution of soil methane assimilation in the long-term Park Grass experiment at Rothamsted. Soil Biology and Biochemistry, 43(5):1034-1041.

Steinmetz, H W; Bakonyi, T; Weissenböck, H; Hatt, Jean-Michel; Eulenberger, U; Robert, N; Hoop, Richard K; Nowotny, N (2011). Emergence and establishment of Usutu virus infection in wild and captive avian species in and around Zurich, Switzerland--genomic and pathologic comparison to other central European outbreaks. Veterinary Microbiology, 148(2-4):207-212.

Fricker-Feer, C; Cernela, N; Bolzan, S; Lehner, Angelika; Stephan, Roger (2011). Evaluation of three commercially available real-time PCR based systems for detection of Cronobacter species. International Journal of Food Microbiology, 146(2):200-202.

Li, J V; Reshat, R; Wu, Q; Ashrafian, H; Bueter, Marco; le Roux, C W; Darzi, A; Athanasiou, T; Marchesi, J R; Nicholson, J K; Holmes, E; Gooderham, N J (2011). Experimental bariatric surgery in rats generates a cytotoxic chemical environment in the gut contents. Frontiers in Microbiology, 2:183.