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2024

Byonanebye, Dathan M; Polizzotto, Mark N; Maltez, Fernando; Rauch, Andri; Grabmeier-Pfistershammer, Katharina; Wit, Ferdinand; De Wit, Stephane; Castagna, Antonella; d'Arminio Monforte, Antonella; Mussini, Cristina; Wasmuth, Jan-Christian; Fontas, Eric; Abela, Irene; Sarcletti, Mario; Bansi-Matharu, Loveleen; Jaschinski, Nadine; Peters, Lars; Hosein, Sean R; Vannappagari, Vani; Cohen, Cal; Bissio, Emiliano; Mocroft, Amanda; Law, Matthew; Ryom, Lene; Petoumenos, Kathy (2024). Associations between change in BMI and the risk of hypertension and dyslipidaemia in people receiving integrase strand-transfer inhibitors, tenofovir alafenamide, or both compared with other contemporary antiretroviral regimens: a multicentre, prospective observational study from the RESPOND consortium cohorts. The Lancet : HIV, 11(5):e321-e332.

Hasler, Moa F; Speck, Roberto F; Kadzioch, Nicole P (2024). Humanized mice for studying HIV latency and potentially its eradication. Current opinion in HIV and AIDS, 19(3):157-167.

Hedskog, Charlotte; Spinner, Christoph D; Protzer, Ulrike; Hoffmann, Dieter; Ko, Chunkyu; Gottlieb, Robert L; Askar, Medhat; Roestenberg, Meta; de Vries, Jutte J C; Carbo, Ellen C; Martin, Ross; Li, Jiani; Han, Dong; Rodriguez, Lauren; Parvangada, Aiyappa; Perry, Jason K; Ferrer, Ricard; Antón, Andrés; Andrés, Cristina; Casares, Vanessa; Günthard, Huldrych F; Huber, Michael; McComsey, Grace A; Sadri, Navid; Aberg, Judith A; van Bakel, Harm; Porter, Danielle P (2024). No Remdesivir Resistance Observed in the Phase 3 Severe and Moderate COVID-19 SIMPLE Trials. Viruses, 16(4):546.

Chan, Tatjana; Ginders, Julia; Kuhlmeier, Evelyn; Meli, Marina L; Bönzli, Eva; Meili, Theres; Hüttl, Julia; Hatt, Jean-Michel; Hindenlang Clerc, Karin; Kipar, Anja; Wyss, Fabia; Wenker, Christian; Ryser-Degiorgis, Marie-Pierre; Valenzuela Agüí, Cecilia; Urban, Christian; Beisel, Christian; Stadler, Tanja; Hofmann-Lehmann, Regina (2024). Detection of SARS-CoV-2 RNA in a Zoo-Kept Red Fox (Vulpes vulpes). Viruses, 16(4):521.

Vetter, Janine; Papa, Guido; Tobler, Kurt; Rodriguez, Javier M; Kley, Manuel; Myers, Michael; Wiesendanger, Mahesa; Schraner, Elisabeth M; Luque, Daniel; Burrone, Oscar R; Fraefel, Cornel; Eichwald, Catherine (2024). The recruitment of TRiC chaperonin in rotavirus viroplasms correlates with virus replication. mBio, 15(4):e0049924.

Meli, Marina L; Pineroli, Benita; Geisser, Esther; Hofmann-Lehmann, Regina (2024). Prospective Investigation of Feline Leukemia Virus Infection in Stray Cats Subjected to a Trap–Neuter–Return Program in Switzerland. Viruses, 16(3):394.

Trickey, Adam; McGinnis, Kathleen; Gill, M John; Abgrall, Sophie; Berenguer, Juan; Wyen, Christoph; Hessamfar, Mojgan; Reiss, Peter; Kusejko, Katharina; Silverberg, Michael J; Imaz, Arkaitz; Teira, Ramon; d'Arminio Monforte, Antonella; Zangerle, Robert; Guest, Jodie L; Papastamopoulos, Vasileios; Crane, Heidi; Sterling, Timothy R; Grabar, Sophie; Ingle, Suzanne M; Sterne, Jonathan A C (2024). Longitudinal trends in causes of death among adults with HIV on antiretroviral therapy in Europe and North America from 1996 to 2020: a collaboration of cohort studies. The Lancet : HIV, 11(3):e176-e185.

Roehrig, Christian; Huemer, Markus; Lorgé, Dominique; Arn, Fabienne; Heinrich, Nadine; Selvakumar, Lavanja; Gasser, Lynn; Hauswirth, Patrick; Chang, Chun-Chi; Schweizer, Tiziano A; Eichenseher, Fritz; Lehmann, Steffi; Zinkernagel, Annelies S; Schmelcher, Mathias (2024). MEndoB, a chimeric lysin featuring a novel domain architecture and superior activity for the treatment of staphylococcal infections. mBio, 15(2):e0254023.

Hilti, Dominique; Wehrli, Faina; Berchtold, Sabine; Bigler, Susanna; Bodmer, Thomas; Seth-Smith, Helena M B; Roloff, Tim; Kohler, Philipp; Kahlert, Christian R; Kaiser, Laurent; Egli, Adrian; Risch, Lorenz; Risch, Martin; Wohlwend, Nadia (2024). S-Gene Target Failure as an Effective Tool for Tracking the Emergence of Dominant SARS-CoV-2 Variants in Switzerland and Liechtenstein, Including Alpha, Delta, and Omicron BA.1, BA.2, and BA.4/BA.5. Microorganisms, 12(2):321.

Meyer Sauteur, Patrick M; Beeton, Michael L; European Society of Clinical Microbiology and Infectious Disease (2024). Mycoplasma pneumoniae: delayed re-emergence after COVID-19 pandemic restrictions. The Lancet Microbe, 5(2):e100-e101.

Freind, Matt C; Tallón de Lara, Carmen; Kouyos, Roger D; Wimmersberger, David; Kuster, Hebert; Aceto, Leonardo; Kovari, Helen; Flepp, Markus; Schibli, Adrian; Hampel, Benjamin; Grube, Christina; Braun, Dominique L; Günthard, Huldrych F (2024). Cohort Profile: The Zurich Primary HIV Infection Study. Microorganisms, 12(2):302.

Abela, Irene A; Schwarzmüller, Magdalena; Ulyte, Agne; Radtke, Thomas; Haile, Sarah R; Ammann, Priska; Raineri, Alessia; Rueegg, Sonja; Epp, Selina; Berger, Christoph; Böni, Jürg; Manrique, Amapola; Audigé, Annette; Huber, Michael; Schreiber, Peter W; Scheier, Thomas; Fehr, Jan; Weber, Jacqueline; Rusert, Peter; Günthard, Huldrych F; Kouyos, Roger D; Puhan, Milo A; Kriemler, Susi; Trkola, Alexandra; Pasin, Chloé (2024). Cross-protective HCoV immunity reduces symptom development during SARS-CoV-2 infection. mBio, 15(2):e0272223.

Mai, Dat; Jahn, Ana; Murray, Tara; Morikubo, Michael; Lim, Pamelia N; Cervantes, Maritza M; Pham, Linh K; Nemeth, Johannes; Urdahl, Kevin; Diercks, Alan H; Aderem, Alan; Rothchild, Alissa C (2024). Exposure to Mycobacterium remodels alveolar macrophages and the early innate response to Mycobacterium tuberculosis infection. PLoS Pathogens, 20(1):e1011871.

Ruchti, Fiorella; Tuor, Meret; Mathew, Liya; McCarthy, Neil E; LeibundGut-Landmann, Salomé (2024). γδ T cells respond directly and selectively to the skin commensal yeast Malassezia for IL-17-dependent fungal control. PLoS Pathogens, 20(1):e1011668.

Oakley, Regina; Dreyfus, Anou; Concha, Gustavo; Poppert, Sven; Plag, Michèle; Meile, Celine; Graves, Stephen; Paris, Daniel H; Kann, Simone (2024). Seroprevalence of Coxiella burnetii in an Indigenous Population from the Sierra Nevada De Santa Marta, Colombia. American Journal of Tropical Medicine and Hygiene, 110(1):155-158.

Gebhard, Caroline E; Sütsch, Claudia; Gebert, Pimrapat; Gysi, Bianca; Bengs, Susan; Todorov, Atanas; Deforth, Manja; Buehler, Philipp K; Meisel, Alexander; Schuepbach, Reto A; Zinkernagel, Annelies S; Brugger, Silvio D; Acevedo, Claudio; Patriki, Dimitri; Wiggli, Benedikt; Beer, Jürg H; Friedl, Andrée; Twerenbold, Raphael; Kuster, Gabriela M; Pargger, Hans; Tschudin-Sutter, Sarah; Schefold, Joerg C; Spinetti, Thibaud; Henze, Chiara; Pasqualini, Mina; Sager, Dominik F; Mayrhofer, Lilian; Grieder, Mirjam; Tontsch, Janna; Franzeck, Fabian C; et al (2024). Impact of sex and gender on post-COVID-19 syndrome, Switzerland, 2020. Eurosurveillance, 29(2):2300200.

2023

Pattyn, Jade; Bonanni, Paolo; Adult Immunization Board Working Group; Steffen, Robert; et al (2023). Assessing the health burden of vaccine-preventable infections in European adults: challenges and opportunities translated into action. Eurosurveillance, 28(48):2300791.

Baggio, Francesca; Hetzel, Udo; Prähauser, Barbara; Dervas, Eva; Michalopoulou, Eleni; Thiele, Tanja; Kipar, Anja; Hepojoki, Jussi (2023). A Multiplex RT-PCR Method for the Detection of Reptarenavirus Infection. Viruses, 15(12):2313.

Loosli, Tom; Hossmann, Stefanie; Ingle, Suzanne M; Okhai, Hajra; Kusejko, Katharina; Mouton, Johannes; Bellecave, Pantxika; van Sighem, Ard; Stecher, Melanie; d'Arminio Monforte, Antonella; Gill, M John; Sabin, Caroline A; Maartens, Gary; Günthard, Huldrych F; Sterne, Jonathan A C; Lessells, Richard; Egger, Matthias; Kouyos, Roger D (2023). HIV-1 drug resistance in people on dolutegravir-based antiretroviral therapy: a collaborative cohort analysis. The Lancet : HIV, 10(11):e733-e741.

Rudin, Christoph; Bollen, Nena; Hong, Samuel L; Wegner, Fanny; Politi, Lida; Mellou, Kassiani; Geenen, Caspar; Gorissen, Sarah; Verhasselt, Bruno; Durkin, Keith; Henin, Coralie; Logist, Anne-Sophie; Dellicour, Simon; Resa, Tobias; Stadler, Tanja; Maes, Piet; Cuypers, Lize; André, Emmanuel; Egli, Adrian; Baele, Guy (2023). Investigation of an international water polo tournament in Czechia as a potential source for early introduction of the SARS-CoV-2 Omicron variant into Belgium, Switzerland and Germany, November 2021. Eurosurveillance, 28(45):2300018.

Hampel, Benjamin; Farnham, Andrea; Lamothe-Molina, Paul J; Capelli, Céline; Schibler, Manuel; Ustero Alonso, Pilar; Calmy, Alexandra; Fehr, Jan S (2023). Low prevalence of asymptomatic mpox in populations at high risk. The Lancet Microbe, 4(11):e856.

Iseli, Alena N; Pohl, Marie O; Glas, Irina; Gaggioli, Elisabeth; Martínez-Barragán, Patricia; David, Shannon C; Schaub, Aline; Luo, Beiping; Klein, Liviana K; Bluvshtein, Nir; Violaki, Kalliopi; Motos, Ghislain; Hugentobler, Walter; Nenes, Athanasios; Krieger, Ulrich K; Peter, Thomas; Kohn, Tamar; Stertz, Silke (2023). The neuraminidase activity of influenza A virus determines the strain-specific sensitivity to neutralization by respiratory mucus. Journal of Virology, 97(10):e0127123.

Zhakparov, Damir; Quirin, Yves; Xiao, Yi; Battaglia, Nicole; Holzer, Michael; Bühler, Martin; Kistler, Walter; Engel, Doortje; Zumthor, Jon Paulin; Caduff, Alexa; Baerenfaller, Katja (2023). Sequencing of SARS-CoV-2 RNA Fragments in Wastewater Detects the Spread of New Variants during Major Events. Microorganisms, 11(11):2660.

Han, Ximeng; Clark, Jordan J; Sharma, Parul; Bentley, Eleanor G; Kipar, Anja; Alsayer, Mohammed; Ren, Xiaolei; Robinson, Amy; Alaidarous, Sondus; Mu, Yang; Sun, Yani; Hiscox, Julian A; Zhou, En-Min; Stewart, James P; Zhao, Qin (2023). Amino acids 1811–1960 of myosin heavy chain 9 is involved in murine gammaherpesvirus 68 infection. Virology, 587:109849.

Pichler, Ian; Schmutz, Stefan; Ziltener, Gabriela; Zaheri, Maryam; Kufner, Verena; Trkola, Alexandra; Huber, Michael (2023). Rapid and sensitive single-sample viral metagenomics using Nanopore Flongle sequencing. Journal of Virological Methods, 320:114784.

Keller, Anja P; Huemer, Markus; Chang, Chun-Chi; Mairpady Shambat, Srikanth; Bjurnemark, Caroline; Oberortner, Nicole; Santschi, Michaela V; Zinsli, Léa V; Röhrig, Christian; Sobieraj, Anna M; Shen, Yang; Eichenseher, Fritz; Zinkernagel, Annelies S; Loessner, Martin J; Schmelcher, Mathias (2023). Systemic application of bone-targeting peptidoglycan hydrolases as a novel treatment approach for staphylococcal bone infection. mBio, 14(5):e0183023.

Radoshitzky, Sheli R; Buchmeier, Michael J; Charrel, Rémi N; Gonzalez, Jean-Paul J; Günther, Stephan; Hepojoki, Jussi; Kuhn, Jens H; Lukashevich, Igor S; Romanowski, Víctor; Salvato, Maria S; Sironi, Manuela; Stenglein, Mark D; de la Torre, Juan Carlos (2023). ICTV Virus Taxonomy Profile: Arenaviridae 2023. Journal of General Virology, 104(9):001891.

Suvvari, Tarun Kumar; Sandeep, Mokanpally; Kumar, Jogender; Satapathy, Prakasini; Chenchula, Santenna; Gandhi, Aravind P; Shamim, Muhammad Aaqib; Schlagenhauf, Patricia; Rodríguez-Morales, Alfonso J; Sah, Ranjit; Pradhan, Keerti Bhusan; Rustagi, Sarvesh; Hermis, Alaa Hamza; Padhi, Bijaya K (2023). A meta-analysis and mapping of global mpox infection among children and adolescents. Reviews in Medical Virology, 33(5):e2472.

Hovaguimian, Frédérique; Beeler, Patrick E; Müllhaupt, Beat; Günthard, Huldrych F; Maeschli, Bettina; Bruggmann, Philip; Fehr, Jan S; Kouyos, Roger D (2023). Mortality and morbidity related to hepatitis C virus infection in hospitalized adults-A propensity score matched analysis. Journal of Viral Hepatitis, 30(9):765-774.

Tasker, Séverine; Addie, Diane D; Egberink, Herman; Hofmann-Lehmann, Regina; Hosie, Margaret J; Truyen, Uwe; Belák, Sándor; Boucraut-Baralon, Corine; Frymus, Tadeusz; Lloret, Albert; Marsilio, Fulvio; Pennisi, Maria Grazia; Thiry, Etienne; Möstl, Karin; Hartmann, Katrin (2023). Feline Infectious Peritonitis: European Advisory Board on Cat Diseases Guidelines. Viruses, 15(9):1847.

Kuhn, Jens H; Abe, Junya; Adkins, Scott; Alkhovsky, Sergey V; Avšič-Županc, Tatjana; Ayllón, María A; Bahl, Justin; Balkema-Buschmann, Anne; Ballinger, Matthew J; Kumar Baranwal, Virendra; Beer, Martin; Bejerman, Nicolas; Bergeron, Éric; Biedenkopf, Nadine; Blair, Carol D; Blasdell, Kim R; Blouin, Arnaud G; Bradfute, Steven B; Briese, Thomas; Brown, Paul A; Buchholz, Ursula J; Buchmeier, Michael J; Bukreyev, Alexander; Burt, Felicity; Büttner, Carmen; Calisher, Charles H; Cao, Mengji; Casas, Inmaculada; Chandran, Kartik; Charrel, Rémi N; et al; Hepojoki, Jussi (2023). Annual (2023) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota). Journal of General Virology, 104(8):001864.

Neary, Megan; Sharp, Joanne; Gallardo-Toledo, Eduardo; Herriott, Joanne; Kijak, Edyta; Bramwell, Chloe; Cox, Helen; Tatham, Lee; Box, Helen; Curley, Paul; Arshad, Usman; Rajoli, Rajith K R; Pertinez, Henry; Valentijn, Anthony; Dhaliwal, Kevin; Mc Caughan, Frank; Hobson, James; Rannard, Steve; Kipar, Anja; Stewart, James P; Owen, Andrew (2023). Evaluation of Nafamostat as Chemoprophylaxis for SARS-CoV-2 Infection in Hamsters. Viruses, 15(8):1744.

Giselbrecht, Juliana; Jähne, Stéphanie; Bergmann, Michèle; Meli, Marina L; Pineroli, Benita; Boenzli, Eva; Teichmann-Knorrn, Svenja; Zablotski, Yury; Pennisi, Maria-Grazia; Layachi, Nicolas; Serra, Rodrigo; Bo, Stefano; Hofmann-Lehmann, Regina; Hartmann, Katrin (2023). Prevalence of Different Courses of Feline Leukaemia Virus Infection in Four European Countries. Viruses, 15(8):1718.

Plachouras, Diamantis; Kacelnik, Oliver; Rodríguez-Baño, Jesús; Birgand, Gabriel; Borg, Michael A; Kristensen, Brian; Kubele, Jan; Lyytikäinen, Outi; Presterl, Elisabeth; Reilly, Jacqui; Voss, Andreas; Zingg, Walter; Suetens, Carl; Monnet, Dominique L (2023). Revisiting the personal protective equipment components of transmission-based precautions for the prevention of COVID-19 and other respiratory virus infections in healthcare. Eurosurveillance, 28(32):2200718.

Hartmann, Katrin; Egberink, Herman; Möstl, Karin; Addie, Diane D; Belák, Sándor; Boucraut-Baralon, Corine; Frymus, Tadeusz; Lloret, Albert; Hofmann-Lehmann, Regina; Marsilio, Fulvio; Pennisi, Maria Grazia; Tasker, Séverine; Thiry, Etienne; Truyen, Uwe; Hosie, Margaret J (2023). Feline Injection-Site Sarcoma and Other Adverse Reactions to Vaccination in Cats. Viruses, 15(8):1708.

Morton, Sarah U; Hehnly, Christine; Burgoine, Kathy; Ssentongo, Paddy; Ericson, Jessica E; Kumar, M Senthil; Hagmann, Cornelia; Fronterre, Claudio; Smith, Jasmine; Movassagh, Mercedeh; Streck, Nicholas; Bebell, Lisa M; Bazira, Joel; Kumbakumba, Elias; Bajunirwe, Francis; Mulondo, Ronald; Mbabazi-Kabachelor, Edith; Nsubuga, Brian K; Natukwatsa, Davis; Nalule, Esther; Magombe, Joshua; Erickson, Tim; Ngonzi, Joseph; Ochora, Moses; Olupot-Olupot, Peter; Onen, Justin; Ssenyonga, Peter; Mugamba, John; Warf, Benjamin C; Kulkarni, Abhaya V; et al (2023). Paenibacillus spp infection among infants with postinfectious hydrocephalus in Uganda: an observational case-control study. The Lancet Microbe, 4(8):e601-e611.

Kristen-Burmann, Claudia; Rogger, Peter; Veiga, Inês Berenguer; Riebesehl, Stefanie; Rappe, Julie; Ebert, Nadine; Sautter, Carmen A; Kelly, Jenna N; Stalder, Hanspeter; Ehmann, Rosina; Huber, Michael; Posthaus, Horst; Ruggli, Nicolas; Thiel, Volker; Tekes, Gergely (2023). Reverse Genetic Assessment of the Roles Played by the Spike Protein and ORF3 in Porcine Epidemic Diarrhea Virus Pathogenicity. Journal of Virology, 97(7):e0196422.

De Neck, Simon; Penrice-Randal, Rebekah; Clark, Jordan J; Sharma, Parul; Bentley, Eleanor G; Kirby, Adam; Mega, Daniele F; Han, Ximeng; Owen, Andrew; Hiscox, Julian A; Stewart, James P; Kipar, Anja (2023). The Stereotypic Response of the Pulmonary Vasculature to Respiratory Viral Infections: Findings in Mouse Models of SARS-CoV-2, Influenza A and Gammaherpesvirus Infections. Viruses, 15(8):1637.

Ostermann, Lena; Seeliger, Benjamin; David, Sascha; Flasche, Carolin; Maus, Regina; Reinboth, Marieke S; Christmann, Martin; Neumann, Konstantin; Brand, Korbinian; Seltmann, Stephan; Bühling, Frank; Paton, James C; Roth, Johannes; Vogl, Thomas; Viemann, Dorothee; Welte, Tobias; Maus, Ulrich A (2023). S100A9 is indispensable for survival of pneumococcal pneumonia in mice. PLoS Pathogens, 19(7):e1011493.

Kümmerli, Rolf; Frank, Steven A (2023). Evolutionary explanations for heterogeneous behavior in clonal bacterial populations. Trends in Microbiology, 31(7):665-667.

Niggli, Selina; Schwyter, Lukas; Poveda, Lucy; Grossmann, Jonas; Kümmerli, Rolf (2023). Rapid and strain-specific resistance evolution of $Staphylococcus aureu$s against inhibitory molecules secreted by $Pseudomonas aeruginosa$. mBio, 14(5):e0315322.

Meyer Sauteur, Patrick M; Beeton, Michael L; ESGMAC the ESGMAC MAPS study group (2023). Mycoplasma pneumoniae: gone forever? The Lancet Microbe, 4(10):e763.

Doulberis, Michael; Kountouras, Jannis; Stadler, Thomas; Meerwein, Christian; Polyzos, Stergios A; Kulaksiz, Hasan; Chapman, Michael H; Rogler, Gerhard; Riva, Daniele; Linas, Ioannis; Kavaliotis, John; Kazakos, Evangelos; Mouratidou, Maria; Liatsos, Christos; Papaefthymiou, Apostolis (2023). Association between Helicobacter pylori Infection and Nasal Polyps: A Systematic Review and Meta-Analysis. Microorganisms, 11(6):1581.

Andani, Anar; Bunge, Eveline; Kassianos, George; Eeuwijk, Jennifer; Mellou, Kassiani; Van Damme, Pierre; Mukherjee, Piyali; Steffen, Robert (2023). Hepatitis A occurrence and outbreaks in Europe over the past two decades: A systematic review. Journal of Viral Hepatitis, 30(6):497-511.

Felten, Sandra; Klein-Richers, Ute; Unterer, Stefan; Bergmann, Michèle; Zablotski, Yury; Hofmann-Lehmann, Regina; Hartmann, Katrin (2023). Patterns of Feline Coronavirus Shedding and Associated Factors in Cats from Breeding Catteries. Viruses, 15(6):1279.

Gasser, Michael; Cassini, Alessandro; Lo Fo Wong, Danilo; Gelormini, Marcello; Nahrgang, Saskia Andrea; Zingg, Walter; Kronenberg, Andreas Oskar (2023). Associated deaths and disability-adjusted life-years caused by infections with antibiotic-resistant bacteria in Switzerland, 2010 to 2019. Eurosurveillance, 28(20):2200532.

Blanc, Marine; Lettl, Clara; Guérin, Jérémy; Vieille, Anaïs; Furler, Sven; Briand-Schumacher, Sylvie; Dreier, Birgit; Bergé, Célia; Plückthun, Andreas; Vadon-Le Goff, Sandrine; Fronzes, Rémi; Rousselle, Patricia; Fischer, Wolfgang; Terradot, Laurent (2023). Designed Ankyrin Repeat Proteins provide insights into the structure and function of CagI and are potent inhibitors of CagA translocation by the Helicobacter pylori type IV secretion system. PLoS Pathogens, 19(5):e1011368.

Zwyer, Michaela; Rutaihwa, Liliana K; Windels, Etthel; Hella, Jerry; Menardo, Fabrizio; Sasamalo, Mohamed; Sommer, Gregor; Schmülling, Lena; Borrell, Sonia; Reinhard, Miriam; Dötsch, Anna; Hiza, Hellen; Stritt, Christoph; Sikalengo, George; Fenner, Lukas; De Jong, Bouke C; Kato-Maeda, Midori; Jugheli, Levan; Ernst, Joel D; Niemann, Stefan; Jeljeli, Leila; Ballif, Marie; Egger, Matthias; Rakotosamimanana, Niaina; Yeboah-Manu, Dorothy; Asare, Prince; Malla, Bijaya; Dou, Horng Yunn; Zetola, Nicolas; Wilkinson, Robert J; et al (2023). Back-to-Africa introductions of Mycobacterium tuberculosis as the main cause of tuberculosis in Dar es Salaam, Tanzania. PLoS Pathogens, 19(4):e1010893.

Vaheri, Antti; Smura, Teemu; Vauhkonen, Hanna; Hepojoki, Jussi; Sironen, Tarja; Strandin, Tomas; Tietäväinen, Johanna; Outinen, Tuula; Mäkelä, Satu; Pörsti, Ilkka; Mustonen, Jukka (2023). Puumala Hantavirus Infections Show Extensive Variation in Clinical Outcome. Viruses, 15(3):805.

Morrissette, Naomi; Abbaali, Izra; Ramakrishnan, Chandra; Hehl, Adrian B (2023). The Tubulin Superfamily in Apicomplexan Parasites. Microorganisms, 11(3):706.

Zeng, Suling; Rosati, Elisa; Saggau, Carina; Messner, Berith; Chu, Huikuan; Duan, Yi; Hartmann, Phillipp; Wang, Yanhan; Ma, Shengyun; Huang, Wendy Jia Men; Lee, Jihyung; Lee, Sung Min; Carvalho-Gontijo, Raquel; Zhang, Vivian; Hoffmann, Joseph P; Kolls, Jay K; Raz, Eyal; Brenner, David A; Kisseleva, Tatiana; LeibundGut-Landmann, Salomé; Bacher, Petra; Stärkel, Peter; Schnabl, Bernd (2023). Candida albicans-specific Th17 cell-mediated response contributes to alcohol-associated liver disease. Cell Host & Microbe, 31(3):389-404.e7.

Nüesch-Inderbinen, Magdalena; Heyvaert, Lore; Treier, Andrea; Zurfluh, Katrin; Cernela, Nicole; Biggel, Michael; Stephan, Roger (2023). High occurrence of Enterococcus faecalis, Enterococcus faecium, and Vagococcus lutrae harbouring oxazolidinone resistance genes in raw meat-based diets for companion animals – a public health issue, Switzerland, September 2018 to May 2020. Eurosurveillance, 28(6):2200496.

Rosato, Giuliana; Abril, Carlos; Hilbe, Monika; Seehusen, Frauke (2023). A Combined Approach for Detection of Ovine Small Ruminant Retrovirus Co-Infections. Viruses, 15(2):376.

Kuhlmeier, Evelyn; Chan, Tatjana; Agüí, Cecilia Valenzuela; Willi, Barbara; Wolfensberger, Aline; Beisel, Christian; Topolsky, Ivan; Beerenwinkel, Niko; Stadler, Tanja; Jones, Sarah; Tyson, Grace; Hosie, Margaret J; Reitt, Katja; Hüttl, Julia; Meli, Marina L; Hofmann-Lehmann, Regina (2023). Detection and Molecular Characterization of the SARS-CoV-2 Delta Variant and the Specific Immune Response in Companion Animals in Switzerland. Viruses, 15(1):245.

Münz, Christian (2023). Immune checkpoints in T cells during oncogenic γ-herpesvirus infections. Journal of Medical Virology, 95(1):e27840.

2022

Schnyder, Anya; Eberl, Leo; Agnoli, Kirsty (2022). Investigating the Biocontrol Potential of the Natural Microbiota of the Apple Blossom. Microorganisms, 10(12):2480.

Nüesch-Inderbinen, Magdalena; Tresch, Silvan; Zurfluh, Katrin; Cernela, Nicole; Biggel, Michael; Stephan, Roger (2022). Finding of extended-spectrum beta-lactamase (ESBL)-producing Enterobacterales in wild game meat originating from several European countries: predominance of Moellerella wisconsensis producing CTX-M-1, November 2021. Eurosurveillance, 27(49):2200343.

Böni, Michelle; Rieble, Lisa; Münz, Christian (2022). Co-Infection of the Epstein–Barr Virus and the Kaposi Sarcoma-Associated Herpesvirus. Viruses, 14(12):2709.

Negrete, Flavia J; Ko, Katie; Jang, Hyein; Hoffmann, Maria; Lehner, Angelika; Stephan, Roger; Fanning, Séamus; Tall, Ben D; Gopinath, Gopal R (2022). Complete genome sequences and genomic characterization of five plasmids harbored by environmentally persistent Cronobacter sakazakii strains ST83 H322 and ST64 GK1025B obtained from powdered infant formula manufacturing facilities. Gut Pathogens, 14(1):23.

Lechmann, Julia; Gehrig, Oliver; Luginbühl, Martin; Fraefel, Cornel; Gaugler, Stefan (2022). Fully automated dried blood spot sample handling and extraction for BoHV-1 antibody testing by ELISA. Journal of Virological Methods, 310:114626.

Meyer Sauteur, Patrick M; Chalker, Victoria J; Berger, Christoph; Nir-Paz, Ran; Beeton, Michael L; et al (2022). Mycoplasma pneumoniae beyond the COVID-19 pandemic: where is it? The Lancet Microbe, 3(12):e897.

Piezzi, Vanja; Wassilew, Nasstasja; Atkinson, Andrew; D'Incau, Stéphanie; Kaspar, Tanja; Seth-Smith, Helena Mb; Casanova, Carlo; Bittel, Pascal; Jent, Philipp; Sommerstein, Rami; Buetti, Niccolò; Marschall, Jonas (2022). Nosocomial outbreak of vancomycin-resistant Enterococcus faecium (VRE) ST796, Switzerland, 2017 to 2020. Eurosurveillance, 27(48):2200285.

Gruenbach, Maarja; Muller, Christina K S; Schlaepfer, Erika; Baroncini, Luca; Russenberger, Doris; Kadzioch, Nicole P; Escher, Benjamin; Schlapschy, Martin; Skerra, Arne; Bredl, Simon; Speck, Roberto F (2022). cART Restores Transient Responsiveness to IFN Type 1 in HIV-Infected Humanized Mice. Journal of Virology, 96(21):e0082722.

Lean, Fabian Z X; Leblond, Anne-Laure; Byrne, Alexander M P; Mollett, Benjamin; James, Joe; Watson, Samantha; Hurley, Shellene; Brookes, Sharon M; Weber, Achim; Núñez, Alejandro (2022). Subclinical hepatitis E virus infection in laboratory ferrets in the UK. Journal of General Virology, 103(11):jgv.0.001803.

Krentz, Daniela; Zwicklbauer, Katharina; Felten, Sandra; Bergmann, Michèle; Dorsch, Roswitha; Hofmann-Lehmann, Regina; Meli, Marina L; Spiri, Andrea M; von Both, Ulrich; Alberer, Martin; Hönl, Anne; Matiasek, Kaspar; Hartmann, Katrin (2022). Clinical Follow-Up and Postmortem Findings in a Cat That Was Cured of Feline Infectious Peritonitis with an Oral Antiviral Drug Containing GS-441524. Viruses, 14(9):2040.

Annaheim, Désirée; Vogler, Barbara Renate; Sigrist, Brigitte; Vögtlin, Andrea; Hüssy, Daniela; Breitler, Christian; Hartnack, Sonja; Grund, Christian; King, Jacqueline; Wolfrum, Nina; Albini, Sarah (2022). Screening of Healthy Feral Pigeons (Columba livia domestica) in the City of Zurich Reveals Continuous Circulation of Pigeon Paramyxovirus-1 and a Serious Threat of Transmission to Domestic Poultry. Microorganisms, 10(8):1656.

Kaczmarczyk, Lech; Schleif, Melvin; Dittrich, Lars; Williams, Rhiannan H; Koderman, Maruša; Bansal, Vikas; Rajput, Ashish; Schulte, Theresa; Jonson, Maria; Krost, Clemens; Testaquadra, Fabio J; Bonn, Stefan; Jackson, Walker S (2022). Distinct translatome changes in specific neural populations precede electroencephalographic changes in prion-infected mice. PLoS Pathogens, 18(8):e1010747.

Cozzi-Lepri, Alessandro; Peters, Lars; Pelchen-Matthews, Annegret; Neesgaard, Bastian; De Wit, Stephane; Johansen, Isik Somuncu; Edwards, Simon; Stephan, Christoph; Adamis, Georgios; Staub, Therese; Zagalo, Alexandra; Domingo, Pere; Elbirt, Daniel; Kusejko, Katharina; Brännström, Johanna; Paduta, Dzmitry; Trofimova, Tatyana; Szlavik, Janos; Zilmer, Kai; Losso, Marcello; van Eygen, Veerle; Pai, Helen; Lundgren, Jens; Mocroft, Amanda; EuroSIDA Study Group (2022). Observational cohort study of rilpivirine (RPV) utilization in Europe. AIDS Research and Therapy, 19:38.

Uribe, Manuel; Segeritz, Lisa; Schnyder, Manuela; Taubert, Anja; Hermosilla, Carlos; López-Osorio, Sara; Góngora-Orjuela, Agustín; Chaparro-Gutiérrez, Jenny J (2022). Nationwide Seroprevalence Survey of Angiostrongylus vasorum-Derived Antigens and Specific Antibodies in Dogs from Colombia. Microorganisms, 10(8):1565.

Amati, Rebecca; Frei, Anja; Kaufmann, Marco; Sabatini, Serena; Pellaton, Céline; Fehr, Jan; Albanese, Emiliano; Puhan, Milo A (2022). Functional immunity against SARS-CoV-2 in the general population after a booster campaign and the Delta and Omicron waves, Switzerland, March 2022. Eurosurveillance, 27(31):2200561.

Jähne, Stéphanie; Felten, Sandra; Bergmann, Michèle; Erber, Katharina; Matiasek, Kaspar; Meli, Marina L; Hofmann-Lehmann, Regina; Hartmann, Katrin (2022). Detection of Feline Coronavirus Variants in Cats without Feline Infectious Peritonitis. Viruses, 14(8):1671.

Voci, Davide; Zbinden, Stéphanie; Micieli, Evy; Kucher, Nils; Barco, Stefano (2022). Fixed-Dose Ultrasound-Assisted Catheter-Directed Thrombolysis for Acute Pulmonary Embolism Associated with COVID-19. Viruses, 14(8):1606.

Sanders, Christopher; Veronesi, Eva; Rajko-Nenow, Paulina; Mertens, Peter Paul Clement; Batten, Carrie; Gubbins, Simon; Carpenter, Simon; Darpel, Karin (2022). Field-Reassortment of Bluetongue Virus Illustrates Plasticity of Virus Associated Phenotypic Traits in the Arthropod Vector and Mammalian Host In Vivo. Journal of Virology, 96(13)::e0053122.

Hufsky, Franziska; Abecasis, Ana; Agudelo-Romero, Patricia; Bletsa, Magda; Brown, Katherine; Claus, Claudia; Deinhardt-Emmer, Stefanie; Deng, Li; Friedel, Caroline C; Gismondi, María Inés; Kostaki, Evangelia Georgia; Kühnert, Denise; Kulkarni-Kale, Urmila; Metzner, Karin J; Meyer, Irmtraud M; Miozzi, Laura; Nishimura, Luca; Paraskevopoulou, Sofia; Pérez-Cataluña, Alba; Rahlff, Janina; Thomson, Emma; Tumescheit, Charlotte; van der Hoek, Lia; Van Espen, Lore; Vandamme, Anne-Mieke; Zaheri, Maryam; Zuckerman, Neta; Marz, Manja (2022). Women in the European Virus Bioinformatics Center. Viruses, 14(7):1522.

Jang, Hyein; Eshwar, Athmanya; Lehner, Angelika; Gangiredla, Jayanthi; Patel, Isha R; Beaubrun, Junia Jean-Gilles; Chase, Hannah R; Negrete, Flavia; Finkelstein, Samantha; Weinstein, Leah M; Ko, Katie; Addy, Nicole; Ewing, Laura; Woo, Jungha; Lee, Youyoung; Seo, Kunho; Jaradat, Ziad; Srikumar, Shabarinath; Fanning, Séamus; Stephan, Roger; Tall, Ben D; Gopinath, Gopal R (2022). Characterization of Cronobacter sakazakii Strains Originating from Plant-Origin Foods Using Comparative Genomic Analyses and Zebrafish Infectivity Studies. Microorganisms, 10(7):1396.

Neesgaard, Bastian; Greenberg, Lauren; Miró, Jose M; et al; Günthard, Huldrych F (2022). Associations between integrase strand-transfer inhibitors and cardiovascular disease in people living with HIV: a multicentre prospective study from the RESPOND cohort consortium. The Lancet : HIV, 9(7):e474-e485.

Metzner, Karin J (2022). Technologies for HIV-1 drug resistance testing: inventory and needs. Current opinion in HIV and AIDS, 17(4):222-228.

Kannan, Abhilash; Suomalainen, Maarit; Volle, Romain; Bauer, Michael; Amsler, Marco; Trinh, Hung V; Vavassori, Stefano; Pachlopnik Schmid, Jana; Vilhena, Guilherme; Marin-Gonzalez, Alberto; Pérez, Rubén; Franceschini, Andrea; von Mering, Christian; Hemmi, Silvio; Greber, Urs F (2022). Sequence-Specific Features of Short Double-Strand, Blunt-End RNAs Have RIG-I- and Type 1 Interferon-Dependent or -Independent Anti-Viral Effects. Viruses, 14(7):1407.

Badenhorst, Marcha; Saalmüller, Armin; Daly, Janet M; Ertl, Reinhard; Stadler, Maria; Puff, Christina; de le Roi, Madeleine; Baumgärtner, Wolfgang; Engelmann, Michael; Brandner, Sabine; Junge, Hannah K; Pratscher, Barbara; Volz, Asisa; Saunier, Bertrand; Krey, Thomas; Wittmann, Johannes; Heelemann, Steffen; Delarocque, Julien; Wagner, Bettina; Todt, Daniel; Steinmann, Eike; Cavalleri, Jessika-M V (2022). An Equine Model for Vaccination against a Hepacivirus: Insights into Host Responses to E2 Recombinant Protein Vaccination and Subsequent Equine Hepacivirus Inoculation. Viruses, 14(7):1401.

Gopinath, Gopal R; Jang, Hyein; Beaubrun, Junia Jean-Gilles; Gangiredla, Jayanthi; Mammel, Mark K; Müller, Andrea; Tamber, Sandeep; Patel, Isha R; Ewing, Laura; Weinstein, Leah M; Wang, Caroline Z; Finkelstein, Samantha; Negrete, Flavia; Muruvanda, Tim; Allard, Marc; Sockett, Donald C; Pagotto, Franco; Tall, Ben D; Stephan, Roger (2022). Phylogenomic Analysis of Salmonella enterica subsp. enterica Serovar Bovismorbificans from Clinical and Food Samples Using Whole Genome Wide Core Genes and kmer Binning Methods to Identify Two Distinct Polyphyletic Genome Pathotypes. Microorganisms, 10(6):1199.

Klinnert, Sarah; Chemnitzer, Alex; Rusert, Peter; Metzner, Karin J (2022). Systematic HIV-1 promoter targeting with CRISPR/dCas9-VPR reveals optimal region for activation of the latent provirus. Journal of General Virology, 103(6):jgv.0.001754.

Kubacki, Jakub; Qi, Weihong; Fraefel, Cornel (2022). Differential Viral Genome Diversity of Healthy and RSS-Affected Broiler Flocks. Microorganisms, 10(6):1092.

Meyer Sauteur, Patrick M; Beeton, Michael L; Uldum, Søren A; Bossuyt, Nathalie; Vermeulen, Melissa; Loens, Katherine; Pereyre, Sabine; Bébéar, Cécile; Keše, Darja; Day, Jessica; Afshar, Baharak; Chalker, Victoria J; Greub, Gilbert; Nir-Paz, Ran; Dumke, Roger (2022). Mycoplasma pneumoniae detections before and during the COVID-19 pandemic: results of a global survey, 2017 to 2021. Eurosurveillance, 27(19):2100746.

Seehusen, Frauke; Clark, Jordan J; Sharma, Parul; Bentley, Eleanor G; Kirby, Adam; Subramaniam, Krishanthi; Wunderlin-Giuliani, Sabina; Hughes, Grant L; Patterson, Edward I; Michael, Benedict D; Owen, Andrew; Hiscox, Julian A; Stewart, James P; Kipar, Anja (2022). Neuroinvasion and Neurotropism by SARS-CoV-2 Variants in the K18-hACE2 Mouse. Viruses, 14(5):1020.

Bajer, Anna; Beck, Ana; Beck, Relja; Behnke, Jerzy M; Dwużnik-Szarek, Dorota; Eichenberger, Ramon M; Farkas, Róbert; Fuehrer, Hans-Peter; Heddergott, Mike; Jokelainen, Pikka; Leschnik, Michael; Oborina, Valentina; Paulauskas, Algimantas; Radzijevskaja, Jana; Ranka, Renate; Schnyder, Manuela; Springer, Andrea; Strube, Christina; Tolkacz, Katarzyna; Walochnik, Julia (2022). Babesiosis in Southeastern, Central and Northeastern Europe: An Emerging and Re-Emerging Tick-Borne Disease of Humans and Animals. Microorganisms, 10(5):945.

Hofmann-Lehmann, Regina; Hosie, Margaret J; Hartmann, Katrin; Egberink, Herman; Truyen, Uwe; Tasker, Séverine; Belák, Sándor; Boucraut-Baralon, Corine; Frymus, Tadeusz; Lloret, Albert; Marsilio, Fulvio; Pennisi, Maria Grazia; Addie, Diane D; Lutz, Hans; Thiry, Etienne; Radford, Alan D; Möstl, Karin (2022). Calicivirus Infection in Cats. Viruses, 14(5):937.

Hartmann, Katrin; Möstl, Karin; Lloret, Albert; Thiry, Etienne; Addie, Diane D; Belák, Sándor; Boucraut-Baralon, Corine; Egberink, Herman; Frymus, Tadeusz; Hofmann-Lehmann, Regina; Lutz, Hans; Marsilio, Fulvio; Pennisi, Maria Grazia; Tasker, Séverine; Truyen, Uwe; Hosie, Margaret J (2022). Vaccination of Immunocompromised Cats. Viruses, 14(5):923.

Boumasmoud, Mathilde; Dengler Haunreiter, Vanina; Schweizer, Tiziano A; Meyer, Lilly; Chakrakodi, Bhavya; Schreiber, Peter W; Seidl, Kati; Kühnert, Denise; Kouyos, Roger D; Zinkernagel, Annelies S (2022). Genomic Surveillance of Vancomycin-Resistant Enterococcus faecium Reveals Spread of a Linear Plasmid Conferring a Nutrient Utilization Advantage. mBio, 13(2):e0377121.

Iheozor-Ejiofor, Rommel; Vapalahti, Katariina; Sironen, Tarja; Levanov, Lev; Hepojoki, Jussi; Lundkvist, Åke; Mäkelä, Satu; Vaheri, Antti; Mustonen, Jukka; Plyusnin, Alexander; Strandin, Tomas M; Vapalahti, Olli (2022). Neutralizing Antibody Titers in Hospitalized Patients with Acute Puumala Orthohantavirus Infection Do Not Associate with Disease Severity. Viruses, 14(5):901.

Polster, Sabrina; Lechmann, Julia; Lienhard, Julia; Peltzer, Deborah; Prähauser, Barbara; Bachofen, Claudia; Seehusen, Frauke (2022). First Report of TTSuV1 in Domestic Swiss Pigs. Viruses, 14(5):870.

Muchaamba, Francis; Barmettler, Karen; Treier, Andrea; Houf, Kurt; Stephan, Roger (2022). Microbiology and Epidemiology of Escherichia albertii—An Emerging Elusive Foodborne Pathogen. Microorganisms, 10(5):875.

Felten, Sandra; Klein-Richers, Ute; Unterer, Stefan; Bergmann, Michèle; Leutenegger, Christian M; Pantchev, Nikola; Balzer, Jörg; Zablotski, Yury; Hofmann-Lehmann, Regina; Hartmann, Katrin (2022). Role of Feline Coronavirus as Contributor to Diarrhea in Cats from Breeding Catteries. Viruses, 14(5):858.

Sigg, Aurelia Pahnita; Mariotti, Max; Grütter, Anabel E; Lafranca, Tecla; Leitner, Lorenz; Bonkat, Gernot; Braissant, Olivier (2022). A Method to Determine the Efficacy of a Commercial Phage Preparation against Uropathogens in Urine and Artificial Urine Determined by Isothermal Microcalorimetry. Microorganisms, 10(5):845.

Lemberg, Christina; de San Vicente, Kontxi Martinez; Fróis-Martins, Ricardo; Altmeier, Simon; Tran, Van Du T; Mertens, Sarah; Amorim-Vaz, Sara; Rai, Laxmi Shanker; d'Enfert, Christophe; Pagni, Marco; Sanglard, Dominique; LeibundGut-Landmann, Salomé (2022). Candida albicans commensalism in the oral mucosa is favoured by limited virulence and metabolic adaptation. PLoS Pathogens, 18(4):e1010012.

Salazar-Vizcaya, Luisa; Kusejko, Katharina; Günthard, Huldrych F; Böni, Jürg; Metzner, Karin J; Braun, Dominique L; Nicca, Dunja; Bernasconi, Enos; Calmy, Alexandra; Darling, Katharine E A; Wandeler, Gilles; Kouyos, Roger D; Rauch, Andri; Swiss HIV Cohort Study (2022). An Approach to Quantifying the Interaction between Behavioral and Transmission Clusters. Viruses, 14(4):784.

Striednig, Bianca; Hilbi, Hubert (2022). Bacterial quorum sensing and phenotypic heterogeneity: how the collective shapes the individual. Trends in Microbiology, 30(4):379-389.

Martinez, Jose Luis; Eichwald, Catherine; Schraner, Elisabeth M; López, Susana; Arias, Carlos F (2022). Lipid metabolism is involved in the association of rotavirus viroplasms with endoplasmic reticulum membranes. Virology, 569:29-36.

Walker, Timothy M; Miotto, Paolo; Köser, Claudio U; Fowler, Philip W; Knaggs, Jeff; Iqbal, Zamin; Hunt, Martin; Chindelevitch, Leonid; Farhat, Maha R; Cirillo, Daniela Maria; Comas, Iñaki; Posey, James; Omar, Shaheed V; Peto, Timothy Ea; Suresh, Anita; Uplekar, Swapna; Laurent, Sacha; Colman, Rebecca E; Nathanson, Carl-Michael; Zignol, Matteo; Walker, Ann Sarah; CRyPTIC Consortium; Seq&Treat Consortium; Crook, Derrick W; Ismail, Nazir; Rodwell, Timothy C (2022). The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: A genotypic analysis. The Lancet Microbe, 3(4):e265-e273.

Kuhlmeier, Evelyn; Chan, Tatjana; Klaus, Julia; Pineroli, Benita; Geisser, Esther; Hofmann-Lehmann, Regina; Meli, Marina L (2022). A Pre- and Within-Pandemic Survey of SARS-CoV-2 RNA in Saliva Swabs from Stray Cats in Switzerland. Viruses, 14(4):681.

Zhao, Lele; Wymant, Chris; Blanquart, François; Golubchik, Tanya; Gall, Astrid; Bakker, Margreet; Bezemer, Daniela; Hall, Matthew; Ong, Swee Hoe; Albert, Jan; Bannert, Norbert; Fellay, Jacques; Grabowski, M Kate; Gunsenheimer-Bartmeyer, Barbara; Günthard, Huldrych F; Kivelä, Pia; Kouyos, Roger D; Laeyendecker, Oliver; Meyer, Laurence; Porter, Kholoud; van Sighem, Ard; van der Valk, Marc; Berkhout, Ben; Kellam, Paul; Cornelissen, Marion; Reiss, Peter; Fraser, Christophe; Ferretti, Luca (2022). Phylogenetic estimation of the viral fitness landscape of HIV-1 set-point viral load. Virus Evolution, 8(1):veac022.

van Dorsten, Rebecca T; Reh, Lucia; Trkola, Alexandra; Morris, Lynn; Moore, Penny L (2022). Single-Chain Variable Fragments of Broadly Neutralizing Antibodies Prevent HIV Cell-Cell Transmission. Journal of Virology, 96(4):e0193421.

Seifert, David; Joos, Beda; Braun, Dominique L; Oberle, Corinna S; Schenkel, Corinne D; Kuster, Herbert; Grube, Christina; Böni, Jürg; Yerly, Sabine; Aubert, Vincent; Klimkait, Thomas; Günthard, Huldrych F; Beerenwinkel, Niko; Metzner, Karin J; Swiss HIV Cohort Study (2022). Detecting Selection in the HIV-1 Genome during Sexual Transmission Events. Viruses, 14(2):406.

Hosie, Margaret J; Hofmann-Lehmann, Regina (2022). Special Issue: Viral Infections in Companion Animals. Viruses, 14(2):320.

Emmenegger, Marc; Kumar, Sreedhar Saseendran; Emmenegger, Vishalini; Malinauskas, Tomas; Buettner, Thomas; Rosen, Laura E; Schierack, Peter; Sprinzl, Martin F; Sommer, Clemens J; Lackner, Karl J; Aguzzi, Adriano; Roggenbuck, Dirk; Frauenknecht, Katrin Barbara Magda (2022). Correction: Anti-prothrombin autoantibodies enriched after infection with SARS-CoV-2 and influenced by strength of antibody response against SARS-CoV-2 proteins. PLoS Pathogens, 18(2):e1010289.

Hale, Benjamin G (2022). Antiviral immunity triggered by infection-induced host transposable elements. Current Opinion in Virology, 52:211-216.

Hobohm, Lukas; Sagoschen, Ingo; Barco, Stefano; Schmidtmann, Irene; Espinola-Klein, Christine; Konstantinides, Stavros; Münzel, Thomas; Keller, Karsten (2022). Trends and Risk Factors of In-Hospital Mortality of Patients with COVID-19 in Germany: Results of a Large Nationwide Inpatient Sample. Viruses, 14(2):275.

Fröhlich, Georg Marcus; De Kraker, Marlieke E A; Abbas, Mohamed; Keiser, Olivia; Thiabaud, Amaury; Roelens, Maroussia; Cusini, Alexia; Flury, Domenica; Schreiber, Peter W; Buettcher, Michael; Corti, Natascia; Vuichard-Gysin, Danielle; Troillet, Nicolas; Sauser, Julien; Gaudenz, Roman; Damonti, Lauro; Balmelli, Carlo; Iten, Anne; Widmer, Andreas; Harbarth, Stephan; Sommerstein, Rami (2022). Hospital outcomes of community-acquired COVID-19 versus influenza: Insights from the Swiss hospital-based surveillance of influenza and COVID-19. Eurosurveillance, 27(1):2001848.

Szirovicza, Leonora; Hetzel, Udo; Kipar, Anja; Hepojoki, Jussi (2022). Short ‘1.2× Genome’ Infectious Clone Initiates Kolmiovirid Replication in Boa constrictor Cells. Viruses, 14(1):107.

Russell, George C; Percival, Ann; Grant, Dawn M; Bartley, Kathryn; Turnbull, Dylan; McLean, Kevin; Lienhard, Julia; Bachofen, Claudia (2022). Development of a recombinant ELISA for ovine herpesvirus 2, suitable for use in sheep. Journal of Virological Methods, 299:114329.

2021

Emmenegger, Marc; Kumar, Sreedhar Saseendran; Emmenegger, Vishalini; Malinauskas, Tomas; Buettner, Thomas; Rose, Laura; Schierack, Peter; Sprinzl, Martin F; Sommer, Clemens J; Lackner, Karl J; Aguzzi, Adriano; Roggenbuck, Dirk; Frauenknecht, Katrin B M (2021). Anti-prothrombin autoantibodies enriched after infection with SARS-CoV-2 and influenced by strength of antibody response against SARS-CoV-2 proteins. PLoS Pathogens, 17(12):e1010118.

Chen, Chaoran; Nadeau, Sarah Ann; Topolsky, Ivan; Manceau, Marc; Huisman, Jana S; Jablonski, Kim Philipp; Fuhrmann, Lara; Dreifuss, David; Jahn, Katharina; Beckmann, Christiane; Redondo, Maurice; Noppen, Christoph; Risch, Lorenz; Risch, Martin; Wohlwend, Nadia; Kas, Sinem; Bodmer, Thomas; Roloff, Tim; Stange, Madlen; Egli, Adrian; Eckerle, Isabella; Kaiser, Laurent; Denes, Rebecca; Feldkamp, Mirjam; Nissen, Ina; Santacroce, Natascha; Burcklen, Elodie; Aquino, Catharine; de Gouvea, Andreia Cabral; Moccia, Maria Domenica; et al (2021). Quantification of the spread of SARS-CoV-2 variant B.1.1.7 in Switzerland. Epidemics, 37:100480.

Schneider, Marcel A; Buzdin, Anton A; Weber, Achim; Clavien, Pierre-Alain; Borger, Pieter (2021). Combination of Antiretroviral Drugs Zidovudine and Efavirenz Impairs Tumor Growths in a Mouse Model of Cancer. Viruses, 13(12):2396.

Rosato, Giuliana; Ruiz Subira, Andres; Al-Saadi, Mohammed; Michalopoulou, Eleni; Verin, Ranieri; Dettwiler, Martina; Nordgren, Heli; Chiers, Koen; Groβmann, Ernst; Köhler, Kernt; Suntz, Michael; Stewart, James P; Kipar, Anja (2021). Gammaherpesvirus Infections in Cattle in Europe. Viruses, 13(12):2337.

Bansi-Matharu, Loveleen; Phillips, Andrew; Oprea, Cristiana; Grabmeier-Pfistershammer, Katharina; Günthard, Huldrych F; et al; Braun, Dominique L (2021). Contemporary antiretrovirals and body-mass index: a prospective study of the RESPOND cohort consortium. The Lancet : HIV, 8(11):e711-e722.

Krentz, Daniela; Zenger, Katharina; Alberer, Martin; Felten, Sandra; Bergmann, Michèle; Dorsch, Roswitha; Matiasek, Kaspar; Kolberg, Laura; Hofmann-Lehmann, Regina; Meli, Marina L; Spiri, Andrea M; Horak, Jeannie; Weber, Saskia; Holicki, Cora M; Groschup, Martin H; Zablotski, Yury; Lescrinier, Eveline; Koletzko, Berthold; von Both, Ulrich; Hartmann, Katrin (2021). Curing cats with Feline Infectious Peritonitis with an oral multi-component drug containing GS-441524. Viruses, 13(11):2228.

Stertz, Silke; Hale, Benjamin G (2021). Interferon system deficiencies exacerbating severe pandemic virus infections. Trends in Microbiology, 29(11):973-982.

Heinzer, Daniel; Avar, Merve; Pease, Daniel Patrick; Dhingra, Ashutosh; Yin, Jiang-An; Schaper, Elke; Doğançay, Berre; Emmenegger, Marc; Spinelli, Anna; Maggi, Kevin; Chincisan, Andra; Mead, Simon; Hornemann, Simone; Heutink, Peter; Aguzzi, Adriano (2021). Novel regulators of PrPC biosynthesis revealed by genome-wide RNA interference. PLoS Pathogens, 17(10):e1010013.

Läderach, Fabienne; Münz, Christian (2021). Epstein Barr Virus Exploits Genetic Susceptibility to Increase Multiple Sclerosis Risk. Microorganisms, 9(11):2191.

Wolters, Femke; Grünberg, Maria; Huber, Michael; Kessler, Harald H; Prüller, Florian; Saleh, Lanja; Fébreau, Christine; Rahamat-Langendoen, Janette; Thibault, Vincent; Melchers, Willem J G (2021). European multicenter evaluation of Xpert® Xpress SARS-CoV-2/Flu/RSV test. Journal of Medical Virology, 93(10):5798-5804.

Spiri, Andrea M; Novacco, Marilisa; Meli, Marina L; Stirn, Martina; Riond, Barbara; Fogle, Jonathan E; Boretti, Felicitas S; Herbert, Imogen; Hosie, Margaret J; Hofmann-Lehmann, Regina (2021). Modified-Live Feline Calicivirus vaccination elicits cellular immunity against a current Feline Calicivirus field strain in an experimental feline challenge study. Viruses, 13(9):1736.

Helfer-Hungerbuehler, A Katrin; Shah, Jimit; Meili, Theres; Boenzli, Eva; Li, Pengfei; Hofmann-Lehmann, Regina (2021). Adeno-associated vector-delivered CRISPR/SaCas9 system reduces Feline Leukemia Virus production in vitro. Viruses, 13(8):1636.

Denoth, Luisa; Juillerat, Pascal; Kremer, Andreas E; Rogler, Gerhard; Scharl, Michael; Yilmaz, Bahtiyar; Bluemel, Sena (2021). Modulation of the Mucosa-Associated Microbiome Linked to the PTPN2 Risk Gene in Patients with Primary Sclerosing Cholangitis and Ulcerative Colitis. Microorganisms, 9(8):1752.

Hepojoki, Jussi; Cabrera, Luz E; Hepojoki, Satu; Bellomo, Carla; Kareinen, Lauri; Andersson, Leif C; Vaheri, Antti; Mäkelä, Satu; Mustonen, Jukka; Vapalahti, Olli; Martinez, Valeria; Strandin, Tomas (2021). Hantavirus infection-induced B cell activation elevates free light chains levels in circulation. PLoS Pathogens, 17(8):e1009843.

Audigé, Annette; Böni, Jürg; Schreiber, Peter W; Scheier, Thomas; Buonomano, Roberto; Rudiger, Alain; Braun, Dominique L; Eich, Gerhard; Keller, Dagmar I; Hasse, Barbara; Berger, Christoph; Günthard, Huldrych F; Manrique, Amapola; Trkola, Alexandra; Huber, Michael (2021). Reduced Relative Sensitivity of the Elecsys SARS-CoV-2 Antigen Assay in Saliva Compared to Nasopharyngeal Swabs. Microorganisms, 9(8):1700.

Suomalainen, Maarit; Greber, Urs F (2021). Virus Infection Variability by Single-Cell Profiling. Viruses, 13(8):1568.

de Vries, Jutte J C; Brown, Julianne R; Fischer, Nicole; Sidorov, Igor A; Morfopoulou, Sofia; Huang, Jiabin; Munnink, Bas B Oude; Sayiner, Arzu; Bulgurcu, Alihan; Rodriguez, Christophe; Gricourt, Guillaume; Keyaerts, Els; Beller, Leen; Bachofen, Claudia; Kubacki, Jakub; Cordey, Samuel; Laubscher, Florian; Schmitz, Dennis; Beer, Martin; Hoeper, Dirk; Huber, Michael; Kufner, Verena; Zaheri, Maryam; Lebrand, Aitana; Papa, Anna; van Boheemen, Sander; Kroes, Aloys C M; Breuer, Judith; Lopez-Labrador, F Xavier; Claas, Eric C J (2021). Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples. Journal of Clinical Virology, 141:104908.

Spiri, Andrea M; Riond, Barbara; Stirn, Martina; Novacco, Marilisa; Meli, Marina L; Boretti, Felicitas S; Herbert, Imogen; Hosie, Margaret J; Hofmann-Lehmann, Regina (2021). Modified-Live Feline Calicivirus Vaccination Reduces Viral RNA Loads, Duration of RNAemia, and the Severity of Clinical Signs after Heterologous Feline Calicivirus Challenge. Viruses, 13(8):1505.

Sims, Stuart; Michaelsen, Kevin; Burkhard, Sara; Fraefel, Cornel (2021). In vitro comparison of the internal ribosomal entry site activity from rodent hepacivirus and pegivirus and construction of pseudoparticles. Advances in Virology, 2021:5569844.

Brügger, Melanie; Démoulins, Thomas; Barut, G Tuba; Zumkehr, Beatrice; Oliveira Esteves, Blandina I; Mehinagic, Kemal; Haas, Quentin; Schögler, Aline; Rameix-Welti, Marie-Anne; Eléouët, Jean-François; Moehrlen, Ueli; Marti, Thomas M; Schmid, Ralph A; Summerfield, Artur; Posthaus, Horst; Ruggli, Nicolas; Hall, Sean R R; Alves, Marco P (2021). Pulmonary mesenchymal stem cells are engaged in distinct steps of host response to respiratory syncytial virus infection. PLoS Pathogens, 17(7):e1009789.

Klaus, Julia; Zini, Eric; Hartmann, Katrin; Egberink, Herman; Kipar, Anja; Bergmann, Michèle; Palizzotto, Carlo; Zhao, Shan; Rossi, Francesco; Franco, Vittoria; Porporato, Federico; Hofmann-Lehmann, Regina; Meli, Marina L (2021). SARS-CoV-2 Infection in dogs and cats from Southern Germany and Northern Italy during the first wave of the COVID-19 pandemic. Viruses, 13(8):1453.

Frymus, Tadeusz; Belák, Sándor; Egberink, Herman; Hofmann-Lehmann, Regina; Marsilio, Fulvio; Addie, Diane D; Boucraut-Baralon, Corine; Hartmann, Katrin; Lloret, Albert; Lutz, Hans; Pennisi, Maria Grazia; Thiry, Etienne; Truyen, Uwe; Tasker, Séverine; Möstl, Karin; Hosie, Margaret J (2021). Influenza virus infections in cats. Viruses, 13(8):1435.

Treier, Andrea; Stephan, Roger; Stevens, Marc J A; Cernela, Nicole; Nüesch-Inderbinen, Magdalena (2021). High Occurrence of Shiga Toxin-Producing Escherichia coli in Raw Meat-Based Diets for Companion Animals—A Public Health Issue. Microorganisms, 9(8):1556.

Ramsauer, Anna Sophie; Wachoski-Dark, Garrett Louis; Fraefel, Cornel; Ackermann, Mathias; Brandt, Sabine; Grest, Paula; Knight, Cameron Greig; Favrot, Claude; Tobler, Kurt (2021). Establishment of a three-dimensional in vitro model of equine papillomavirus Type 2 infection. Viruses, 13(7):1404.

Sigrist, Brigitte; Geers, Jessica; Albini, Sarah; Rubbenstroth, Dennis; Wolfrum, Nina (2021). A New Multiplex Real-Time RT-PCR for Simultaneous Detection and Differentiation of Avian Bornaviruses. Viruses, 13(7):1358.

Pohl, Marie O; Busnadiego, Idoia; Marrafino, Francesco; Wiedmer, Lars; Hunziker, Annika; Fernbach, Sonja; Glas, Irina; Moroz-Omori, Elena V; Hale, Benjamin G; Caflisch, Amedeo; Stertz, Silke (2021). Combined computational and cellular screening identifies synergistic inhibition of SARS-CoV-2 by lenvatinib and remdesivir. Journal of General Virology, 102(7):001625.

Zürcher, K; Reichmuth, M L; Ballif, M; Loiseau, C; Borrell, S; Reinhard, M; Skrivankova, V; Hömke, R; Sander, P; Avihingsanon, A; Abimiku, A G; Marcy, O; Collantes, J; Carter, E Jane; Wilkinson, R J; Cox, H; Yotebieng, M; Huebner, R; Fenner, L; Böttger, E C; Gagneux, S; Egger, M (2021). Mortality from drug-resistant tuberculosis in high-burden countries comparing routine drug susceptibility testing with whole-genome sequencing: a multicentre cohort study. The Lancet Microbe, 2(7):e320-e330.

Anes, João; Dever, Katherine; Eshwar, Athmanya; Nguyen, Scott; Cao, Yu; Sivasankaran, Sathesh K; Sakalauskaitė, Sandra; Lehner, Angelika; Devineau, Stéphanie; Daugelavičius, Rimantas; Stephan, Roger; Fanning, Séamus; Srikumar, Shabarinath (2021). Analysis of the Oxidative Stress Regulon Identifies soxS as a Genetic Target for Resistance Reversal in Multidrug-Resistant Klebsiella pneumoniae. mBio, 12(3):e0086721.

Jarzebska, Natalia Teresa; Frei, Julia; Lauchli, Severin; French, Lars E; Guenova, Emmanuella; Gouttefangeas, Cécile; Kündig, Thomas M; Mellett, Mark; Pascolo, Steve (2021). Lipofection with Synthetic mRNA as a Simple Method for T-Cell Immunomonitoring. Viruses, 13(7):1232.

Horlbog, Jule Anna; Stephan, Roger; Stevens, Marc J A; Overesch, Gudrun; Kittl, Sonja; Napoleoni, Maira; Silenzi, Valentina; Nüesch-Inderbinen, Magdalena; Albini, Sarah (2021). Feedborne Salmonella enterica Serovar Jerusalem Outbreak in Different Organic Poultry Flocks in Switzerland and Italy Linked to Soya Expeller. Microorganisms, 9(7):1367.

Meier, Anita Felicitas; Tobler, Kurt; Michaelsen, Kevin; Vogt, Bernd; Henckaerts, Els; Fraefel, Cornel (2021). Herpes Simplex Virus 1 Coinfection Modifies Adeno-associated Virus Genome End Recombination. Journal of Virology, 95(13):e00486-21.

Greber, Urs F; Gomez-Gonzalez, Alfonso (2021). Adenovirus – a blueprint for gene delivery. Current Opinion in Virology, 48:49-56.

Meier, Anita Felicitas; Tobler, Kurt; Leisi, Remo; Lkharrazi, Anouk; Ros, Carlos; Fraefel, Cornel (2021). Herpes simplex virus co-infection facilitates rolling circle replication of the adeno-associated virus genome. PLoS Pathogens, 17(6):e1009638.

Kamali-Jamil, Razieh; Vázquez-Fernández, Ester; Tancowny, Brian; Rathod, Vineet; Amidian, Sara; Wang, Xiongyao; Tang, Xinli; Fang, Andrew; Senatore, Assunta; Hornemann, Simone; Dudas, Sandor; Aguzzi, Adriano; Young, Howard S; Wille, Holger (2021). The ultrastructure of infectious L-type bovine spongiform encephalopathy prions constrains molecular models. PLoS Pathogens, 17(6):e1009628.

Sempere Borau, Milagros; Stertz, Silke (2021). Entry of influenza A virus into host cells - recent progress and remaining challenges. Current Opinion in Virology, 48:23-29.

Blanchard-Rohner, Geraldine; Caprettini, Bruno; Rohner, Dominic; Voth, Hans-Joachim (2021). Impact of COVID-19 and intensive care unit capacity on vaccination support: evidence from a two-leg representative survey in the United Kingdom. Journal of Virus Eradication, 7(2):100044.

Echavarría-Consuegra, Liliana; Cook, Georgia M; Busnadiego, Idoia; Lefèvre, Charlotte; Keep, Sarah; Brown, Katherine; Doyle, Nicole; Dowgier, Giulia; Franaszek, Krzysztof; Moore, Nathan A; Siddell, Stuart G; Bickerton, Erica; Hale, Benjamin G; Firth, Andrew E; Brierley, Ian; Irigoyen, Nerea (2021). Manipulation of the unfolded protein response: A pharmacological strategy against coronavirus infection. PLoS Pathogens, 17(6):e1009644.

Virtanen, Jenni; Uusitalo, Ruut; Korhonen, Essi M; Aaltonen, Kirsi; Smura, Teemu; Kuivanen, Suvi; Pakkanen, Sari H; Mero, Sointu; Patjas, Anu; Riekkinen, Marianna; Kantele, Anu; Nurmi, Visa; Hedman, Klaus; Hepojoki, Jussi; Sironen, Tarja; Huhtamo, Eili; Vapalahti, Olli (2021). Kinetics of Neutralizing Antibodies of COVID-19 Patients Tested Using Clinical D614G, B.1.1.7, and B 1.351 Isolates in Microneutralization Assays. Viruses, 13(6):996.

Rusanen, Juuso; Kareinen, Lauri; Szirovicza, Leonora; Uğurlu, Hasan; Levanov, Lev; Jääskeläinen, Anu; Ahava, Maarit; Kurkela, Satu; Saksela, Kalle; Hedman, Klaus; Vapalahti, Olli; Hepojoki, Jussi (2021). A Generic, Scalable, and Rapid Time-Resolved Förster Resonance Energy Transfer-Based Assay for Antigen Detection—SARS-CoV-2 as a Proof of Concept. mBio, 12(3):e00902-21.

Oyewole, Oluwaseun Rume-Abiola; Lang, Phung; Albrich, Werner C; Wissel, Kerstin; Leib, Stephen L; Casanova, Carlo; Hilty, Markus (2021). The Impact of Pneumococcal Conjugate Vaccine (PCV) Coverage Heterogeneities on the Changing Epidemiology of Invasive Pneumococcal Disease in Switzerland, 2005-2019. Microorganisms, 9(5):1078.

Muchaamba, Francis; Stephan, Roger; Tasara, Taurai (2021). Listeria monocytogenes Cold Shock Proteins: Small Proteins with A Huge Impact. Microorganisms, 9(5):1061.

Etter, Danai; Jenni, Céline; Tasara, Taurai; Johler, Sophia (2021). Mild Lactic Acid Stress Causes Strain-Dependent Reduction in SEC Protein Levels. Microorganisms, 9(5):1014.

Münz, Christian (2021). Regulation of the Macroautophagic Machinery, Cellular Differentiation, and Immune Responses by Human Oncogenic γ-Herpesviruses. Viruses, 13(5):859.

de Vries, Jutte J C; Brown, Julianne R; Couto, Natacha; Beer, Martin; Le Mercier, Philippe; Sidorov, Igor; Papa, Anna; Fischer, Nicole; Oude Munnink, Bas B; Rodriquez, Christophe; Zaheri, Maryam; Sayiner, Arzu; Hönemann, Mario; Pérez-Cataluña, Alba; Carbo, Ellen C; Bachofen, Claudia; Kubacki, Jakub; et al (2021). Recommendations for the introduction of metagenomic next-generation sequencing in clinical virology, part II: bioinformatic analysis and reporting. Journal of Clinical Virology, 138:104812.

Hüsler, Dario; Steiner, Bernhard; Welin, Amanda; Striednig, Bianca; Swart, A Leoni; Molle, Virginie; Hilbi, Hubert; Letourneur, François (2021). Dictyostelium lacking the single atlastin homolog Sey1 shows aberrant ER architecture, proteolytic processes and expansion of the Legionella-containing vacuole. Cellular Microbiology, 23(5):e13318.

Dmitrijeva, Marija; Kahlert, Christian R; Feigelman, Rounak; Kleiner, Rebekka L; Nolte, Oliver; Albrich, Werner C; Baty, Florent; von Mering, Christian (2021). Strain-Resolved Dynamics of the Lung Microbiome in Patients with Cystic Fibrosis. mBio, 12(2):e02863-20.

Ries, Christina; Vögtlin, Andrea; Hüssy, Daniela; Jandt, Tabea; Gobet, Hansjörg; Hilbe, Monika; Burgener, Carole; Schweizer, Luzia; Häfliger-Speiser, Stephanie; Beer, Martin; Hoffmann, Bernd (2021). Putative Novel Atypical BTV Serotype ‘36’ Identified in Small Ruminants in Switzerland. Viruses, 13(5):721.

Fenn, Samuel; Dubern, Jean-Frédéric; Cigana, Cristina; De Simone, Maura; Lazenby, James; Juhas, Mario; Schwager, Stephan; Bianconi, Irene; Döring, Gerd; Elmsley, Jonas; Eberl, Leo; Williams, Paul; Bragonzi, Alessandra; Cámara, Miguel (2021). NirA is an alternative nitrite reductase from Pseudomonas aeruginosa with potential as an antivirulence target. mBio, 12(2):e00207-21.

Jääskeläinen, A E; Ahava, M J; Jokela, P; Szirovicza, L; Pohjala, S; Vapalahti, O; Lappalainen, M; Hepojoki, Jussi; Kurkela, S (2021). Evaluation of three rapid lateral flow antigen detection tests for the diagnosis of SARS-CoV-2 infection. Journal of Clinical Virology, 137:104785.

Rodionov, Roman N; Biener, Anne; Spieth, Peter; Achleitner, Martin; Hölig, Kristina; Aringer, Martin; Mingrone, Geltrude; Corman, Victor M; Drosten, Christian; Bornstein, Stefan R; Tonn, Torsten; Kolditz, Martin (2021). Potential benefit of convalescent plasma transfusions in immunocompromised patients with COVID-19. The Lancet Microbe, 2(4):e138.

Ramette, Alban; Gasser, Michael; Nordmann, Patrice; Zbinden, Reinhard; Schrenzel, Jacques; Perisa, Damir; Kronenberg, Andreas (2021). Temporal and regional incidence of carbapenemase-producing Enterobacterales, Switzerland, 2013 to 2018. Eurosurveillance, 26(15):1900760.

Goncalves Cabecinhas, Ana Rita; Roloff, Tim; Stange, Madlen; Bertelli, Claire; Huber, Michael; Ramette, Alban; Chen, Chaoran; Nadeau, Sarah; Gerth, Yannick; Yerly, Sabine; Opota, Onya; Pillonel, Trestan; Schuster, Tobias; Metzger, Cesar M J A; Sieber, Jonas; Bel, Michael; Wohlwend, Nadia; Baumann, Christian; Koch, Michel C; Bittel, Pascal; Leuzinger, Karoline; Brunner, Myrta; Suter-Riniker, Franziska; Berlinger, Livia; Søgaard, Kirstine K; Beckmann, Christiane; Noppen, Christoph; Redondo, Maurice; Steffen, Ingrid; Seth-Smith, Helena M B; et al (2021). SARS-CoV-2 N501Y Introductions and Transmissions in Switzerland from Beginning of October 2020 to February 2021—Implementation of Swiss-Wide Diagnostic Screening and Whole Genome Sequencing. Microorganisms, 9(4):677.

Lork, Marie; Lieber, Gauthier; Hale, Benjamin G (2021). Proteomic Approaches to Dissect Host SUMOylation during Innate Antiviral Immune Responses. Viruses, 13(3):528.

Klaus, Julia; Palizzotto, Carlo; Zini, Eric; Meli, Marina L; Leo, Chiara; Egberink, Herman; Zhao, Shan; Hofmann-Lehmann, Regina (2021). SARS-CoV-2 infection and antibody response in a symptomatic cat from Italy with intestinal B-cell lymphoma. Viruses, 13(3):527.

Huber, Michael; Schreiber, Peter Werner; Scheier, Thomas; Audigé, Annette; Buonomano, Roberto; Rudiger, Alain; Braun, Dominique L; Eich, Gerhard; Keller, Dagmar I; Hasse, Barbara; Böni, Jürg; Berger, Christoph; Günthard, Huldrych F; Manrique, Amapola; Trkola, Alexandra (2021). High Efficacy of Saliva in Detecting SARS-CoV-2 by RT-PCR in Adults and Children. Microorganisms, 9(3):642.

Klaus, Julia; Meli, Marina L; Willi, Barbara; Nadeau, Sarah; Beisel, Christian; Stadler, Tanja; Egberink, Herman; Zhao, Shan; Lutz, Hans; Riond, Barbara; Rösinger, Nina; Stalder, Hanspeter; Renzullo, Sandra; Hofmann-Lehmann, Regina (2021). Detection and genome sequencing of SARS-CoV-2 in a domestic cat with respiratory signs in Switzerland. Viruses, 13(3):496.

Mohanraj, Ushanandini; Jokinen, Maija; Thapa, Rajita Rayamajhi; Paloniemi, Minna; Vesikari, Timo; Lappalainen, Maija; Tarkka, Eveliina; Nora-Krūkle, Zaiga; Vilmane, Anda; Vettenranta, Kim; Mangani, Charles; Oikarinen, Sami; Fan, Yue-Mei; Ashorn, Per; Väisänen, Elina; Söderlund-Venermo, Maria (2021). Human Protoparvovirus DNA and IgG in Children and Adults with and without Respiratory or Gastrointestinal Infections. Viruses, 13(3):483.

Hetzel, Udo; Korzyukov, Y; Keller, S; Szirovicza, L; Pesch, T; Vapalahti, O; Kipar, A; Hepojoki, Jussi (2021). Experimental Reptarenavirus Infection of Boa constrictor and Python regius. Journal of Virology, 95(7):e01968-20.

Forster, Dominik; Qu, Zhishuai; Pitsch, Gianna; Bruni, Estelle P; Kammerlander, Barbara; Pröschold, Thomas; Sonntag, Bettina; Posch, Thomas; Stoeck, Thorsten (2021). Lake ecosystem robustness and resilience inferred from a climate-stressed protistan plankton network. Microorganisms, 9(2):549.

Rindler, Audrey E; Kuster, Herbert; Neumann, Kathrin; Leemann, Christine; Braun, Dominique L; Metzner, Karin J; Günthard, Huldrych F (2021). A Novel High Throughput, Parallel Infection Assay for Determining the Replication Capacities of 346 Primary HIV-1 Isolates of the Zurich Primary HIV-1 Infection Study in Primary Cells. Viruses, 13(3):404.

Peltzer, Deborah; Tobler, Kurt; Fraefel, Cornel; Maley, Madeleine; Bachofen, Claudia (2021). Rapid and simple colorimetric loop-mediated isothermal amplification (LAMP) assay for the detection of Bovine alphaherpesvirus 1. Journal of Virological Methods, 289:114041.

Westman, Mark; Norris, Jacqueline; Malik, Richard; Hofmann-Lehmann, Regina; Parr, Yasmin A; Armstrong, Emma; McDonald, Mike; Hall, Evelyn; Sheehy, Paul; Hosie, Margaret J (2021). Anti-SU antibody responses in client-owned cats following vaccination against Feline Leukaemia Virus with two inactivated whole-virus vaccines (Fel-O-Vax® Lv-K and Fel-O-Vax® 5). Viruses, 13(2):240.

Zhang, Xiaozhou; Borbet, Timothy C; Fallegger, Angela; Wipperman, Matthew F; Blaser, Martin J; Müller, Anne (2021). An Antibiotic-Impacted Microbiota Compromises the Development of Colonic Regulatory T Cells and Predisposes to Dysregulated Immune Responses. mBio, 12:e03335-20.

Hanna, Nabil; Koliwer-Brandl, Hendrik; Lefrançois, Louise H; Kalinina, Vera; Cardenal-Muñoz, Elena; Appiah, Joddy; Leuba, Florence; Gueho, Aurélie; Hilbi, Hubert; Soldati, Thierry; Barisch, Caroline (2021). Zn 2+ Intoxication of Mycobacterium marinum during Dictyostelium discoideum Infection Is Counteracted by Induction of the Pathogen Zn 2+ Exporter CtpC. mBio, 12:e01313-20.

Hartnack, Sonja; Eusebi, Paolo; Kostoulas, Polychronis (2021). Bayesian latent class models to estimate diagnostic test accuracies of COVID‐19 tests. Journal of Medical Virology, 93(2):639-640.

Münz, Christian (2021). Cytotoxicity in Epstein Barr virus specific immune control. Current Opinion in Virology, 46:1-8.

Rusanen, Juuso; Kareinen, Lauri; Levanov, Lev; Mero, Sointu; Pakkanen, Sari H; Kantele, Anu; Amanat, Fatima; Krammer, Florian; Hedman, Klaus; Vapalahti, Olli; Hepojoki, Jussi (2021). A 10-Minute “Mix and Read” Antibody Assay for SARS-CoV-2. Viruses, 13(2):143.

Wallace, Megan A; Coffman, Kelsey A; Gilbert, Clément; Ravindran, Sanjana; Albery, Gregory F; Abbott, Jessica; et al; Kapun, Martin (2021). The discovery, distribution, and diversity of DNA viruses associated with Drosophila melanogaster in Europe. Virus Evolution, 7(1):1-23.

Karygianni, Lamprini; Ruf, Sandra; Hellwig, Elmar; Follo, Marie; Vach, Kirstin; Al-Ahmad, Ali (2021). Antimicrobial Photoinactivation of In Situ Oral Biofilms by Visible Light Plus Water-Filtered Infrared A and Tetrahydroporphyrin-tetratosylate (THPTS). Microorganisms, 9:145.

Weiss, Gisela Adrienne; Grabinger, Thomas; Glaus Garzon, Jesus; Hasler, Tobias; Greppi, Anna; Lacroix, Christophe; Khanzhin, Nikolay; Hennet, Thierry (2021). Intestinal inflammation alters mucosal carbohydrate foraging and monosaccharide incorporation into microbial glycans. Cellular Microbiology, 23(1):e13269.

López-Labrador, F Xavier; Brown, Julianne R; Fischer, Nicole; Harvala, Heli; Van Boheemen, Sander; Cinek, Ondrej; Sayiner, Arzu; Madsen, Tina Vasehus; Auvinen, Eeva; Kufner, Verena; Huber, Michael; Rodriguez, Christophe; Jonges, Marcel; Hönemann, Mario; Susi, Petri; Sousa, Hugo; Klapper, Paul E; Pérez-Cataluňa, Alba; Hernandez, Marta; Molenkamp, Richard; van der Hoek, Lia; Schuurman, Rob; Couto, Natacha; Leuzinger, Karoline; Simmonds, Peter; Beer, Martin; Höper, Dirk; Kamminga, Sergio; Feltkamp, Mariet C W; Rodríguez-Díaz, Jesús; et al (2021). Recommendations for the introduction of metagenomic high-throughput sequencing in clinical virology, part I: Wet lab procedure. Journal of Clinical Virology, 134:104691.

2020

Küchler, Leonore; Rüfli, Isabelle; Koch, Michel C; Hierweger, Melanie M; Kauer, Ronja V; Boujon, Céline L; Hilbe, Monika; Oevermann, Anna; Zanolari, Patrik; Seuberlich, Torsten; Gurtner, Corinne (2020). Astrovirus-Associated Polioencephalomyelitis in an Alpaca. Viruses, 13(1):E50.

Kuhn, Jens H; Adkins, Scott; Alioto, Daniela; Alkhovsky, Sergey V; Amarasinghe, Gaya K; Anthony, Simon J; Avšič-Županc, Tatjana; Ayllón, María A; Bahl, Justin; Balkema-Buschmann, Anne; Ballinger, Matthew J; Bartonička, Tomáš; Basler, Christopher; Bavari, Sina; Beer, Martin; Bente, Dennis A; Bergeron, Éric; Bird, Brian H; Blair, Carol; Blasdell, Kim R; Bradfute, Steven B; Breyta, Rachel; Briese, Thomas; Brown, Paul A; Buchholz, Ursula J; Buchmeier, Michael J; Bukreyev, Alexander; Burt, Felicity; Buzkan, Nihal; Calisher, Charles H; Hetzel, Udo; et al (2020). 2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales. Archives of Virology, 165(12):3023-3072.

Caduff, Nicole; McHugh, Donal; Murer, Anita; Rämer, Patrick; Raykova, Ana; Landtwing, Vanessa; Rieble, Lisa; Keller, Christian W; Prummer, Michael; Hoffmann, Laurent; Lam, Janice K P; Chiang, Alan K S; Raulf, Friedrich; Azzi, Tarik; Berger, Christoph; Rubic-Schneider, Tina; Traggiai, Elisabetta; Lünemann, Jan D; Kammüller, Michael; Münz, Christian (2020). Correction: Immunosuppressive FK506 treatment leads to more frequent EBV-associated lymphoproliferative disease in humanized mice. PLoS Pathogens, 16(12):e1009167.

Peros, Georgios; Gronki, Ferda; Molitor, Nadine; Streit, Michael; Sugimoto, Kiyoshi; Karrer, Urs; Lunger, Fabian; Adamina, Michel; Breitenstein, Stefan; Lamdark, Tenzin (2020). Organizing a COVID-19 triage unit: a Swiss perspective. Emerging Microbes and Infections, 9(1):1506-1513.

Braun, Dominique L; Scheier, Thomas; Ledermann, Ulrich; Flepp, Markus; Metzner, Karin J; Böni, Jürg; Günthard, Huldrych F (2020). Emergence of resistance to integrase strand transfer inhibitors during Dolutegravir containing triple-therapy in a treatment-experienced patient with pre-existing M184V/I mutation. Viruses, 12(11):1330.

Carlisle, Louisa A; Turk, Teja; Metzner, Karin J; Mbunkah, Herbert A; Shah, Cyril; Böni, Jürg; Huber, Michael; Braun, Dominique L; Fehr, Jan; Salazar-Vizcaya, Luisa; Rauch, Andri; Yerly, Sabine; Nguyen, Aude; Cavassini, Matthias; Stoeckle, Marcel; Vernazza, Pietro; Bernasconi, Enos; Günthard, Huldrych F; Kouyos, Roger D (2020). HCV genetic diversity can be used to infer infection recency and time since Iifection. Viruses, 12(11):1241.

Steiner, Fiona; Pavlovic, Jovan (2020). Subcellular Localization of MxB Determines Its Antiviral Potential against Influenza A Virus. Journal of Virology, 94(22):e00125-20.

Mattila, Mirjami; Somervuo, Panu; Korkeala, Hannu; Stephan, Roger; Tasara, Taurai (2020). Transcriptomic and phenotypic analyses of the Sigma B-dependent characteristics and the synergism between Sigma B and Sigma L in Listeria monocytogenes EGD-e. Microorganisms, 8(11):1644.

Eichwald, Catherine; Ackermann, Mathias; Fraefel, Cornel (2020). Mammalian orthoreovirus core protein μ2 reorganizes host microtubule-organizing center components. Virology, 549:13-24.

Swart, Anna Leoni; Gomez-Valero, Laura; Buchrieser, Carmen; Hilbi, Hubert (2020). Evolution and function of bacterial RCC1 repeat effectors. Cellular Microbiology, 22(10):e13246.

Moriyama, Miyu; Hugentobler, Walter J; Iwasaki, Akiko (2020). Seasonality of Respiratory Viral Infections. Annual Review of Virology, 7(1):annurev-virology-012420-022445.

Sobieraj, Anna M; Huemer, Markus; Zinsli, Léa V; Meile, Susanne; Keller, Anja P; Röhrig, Christian; Eichenseher, Fritz; Shen, Yang; Zinkernagel, Annelies S; Loessner, Martin J; Schmelcher, Mathias (2020). Engineering of long-circulating peptidoglycan hydrolases enables efficient treatment of systemic Staphylococcus aureus infection. mBio, 11(5):e01781-20.

Busnadiego, Idoia; Fernbach, Sonja; Pohl, Marie O; Karakus, Umut; Huber, Michael; Trkola, Alexandra; Stertz, Silke; Hale, Benjamin G (2020). Antiviral Activity of Type I, II, and III Interferons Counterbalances ACE2 Inducibility and Restricts SARS-CoV-2. mBio, 11(5):e01928-20.

Klein-Richers, Ute; Hartmann, Katrin; Hofmann-Lehmann, Regina; Unterer, Stefan; Bergmann, Michèle; Rieger, Anna; Leutenegger, Christian; Pantchev, Nikola; Balzer, Jörg; Felten, Sandra (2020). Prevalence of feline coronavirus shedding in German catteries and associated risk factors. Viruses, 12(9):1000.

Applen Clancey, Shelly; Ruchti, Fiorella; LeibundGut-Landmann, Salomé; Heitman, Joseph; Ianiri, Giuseppe (2020). A Novel Mycovirus Evokes Transcriptional Rewiring in the Fungus Malassezia and Stimulates Beta Interferon Production in Macrophages. mBio, 11:e01534-20.

Dervas, Eva; Hepojoki, Jussi; Smura, Teemu; Prähauser, Barbara; Windbichler, Katharina; Blümich, Sandra; Ramis, Antonio; Hetzel, Udo; Kipar, Anja (2020). Serpentoviruses: More than Respiratory Pathogens. Journal of Virology, 94(18):e00649-20.

Kubacki, Jakub; Flacio, Eleonora; Qi, Weihong; Guidi, Valeria; Tonolla, Mauro; Fraefel, Cornel (2020). Viral metagenomic analysis of Aedes albopictus mosquitos from Southern Switzerland. Viruses, 12(9):929.

Frick-Cheng, Arwen E; Sintsova, Anna; Smith, Sara N; Krauthammer, Michael; Eaton, Kathryn A; Mobley, Harry L T (2020). The Gene Expression Profile of Uropathogenic Escherichia coli in Women with Uncomplicated Urinary Tract Infections Is Recapitulated in the Mouse Model. mBio, 11(4):e01412-20..

Karygianni, L; Ren, Z; Koo, H; Thurnheer, T (2020). Biofilm Matrixome: Extracellular Components in Structured Microbial Communities. Trends in Microbiology, 28(8):668-681.

The Respond Study Group (2020). How to RESPOND to Modern Challenges for People Living with HIV: A Profile for a New Cohort Consortium. Microorganisms, 8(8):1164.

Osuch, Sylwia; Metzner, Karin J; Caraballo Cortés, Kamila (2020). Reversal of T cell exhaustion in chronic HCV infection. Viruses, 12(8):799.

Nemeth, Johannes; Olson, Gregory S; Rothchild, Alissa C; Jahn, Ana N; Mai, Dat; Duffy, Fergal J; Delahaye, Jared L; Srivatsan, Sanjay; Plumlee, Courtney R; Urdahl, Kevin B; Gold, Elizabeth S; Aderem, Alan; Diercks, Alan H (2020). Contained Mycobacterium tuberculosis infection induces concomitant and heterologous protection. PLoS Pathogens, 16(7):e1008655.

Emond-Rheault, Jean-Guillaume; Hamel, Jérémie; Jeukens, Julie; Freschi, Luca; Kukavica-Ibrulj, Irena; Boyle, Brian; Tamber, Sandeep; Malo, Danielle; Franz, Eelco; Burnett, Elton; Daigle, France; Arya, Gitanjali; Sanderson, Kenneth; Wiedmann, Martin; Slawson, Robin M; Weadge, Joel T; Stephan, Roger; Bekal, Sadjia; Gruenheid, Samantha; Goodridge, Lawrence D; Levesque, Roger C (2020). The Salmonella enterica plasmidome as a reservoir of antibiotic resistance. Microorganisms, 8(7):1016.

Persson, B David; Lenman, Annasara; Frängsmyr, Lars; Schmid, Markus; Ahlm, Clas; Plückthun, Andreas; Jenssen, Håvard; Arnberg, Niklas (2020). Lactoferrin-hexon interactions mediate CAR-independent adenovirus infection of human respiratory cells. Journal of Virology, 94(14):e00542-20.

Sorce, Silvia; Nuvolone, Mario; Russo, Giancarlo; Chincisan, Andra; Heinzer, Daniel; Avar, Merve; Pfammatter, Manuela; Schwarz, Petra; Delic, Mirzet; Müller, Micha; Hornemann, Simone; Sanoudou, Despina; Scheckel, Claudia; Aguzzi, Adriano (2020). Genome-wide transcriptomics identifies an early preclinical signature of prion infection. PLoS Pathogens, 16(6):e1008653.

Meier, Anita F; Fraefel, Cornel; Seyffert, Michael (2020). The interplay between adeno-associated virus and its helper viruses. Viruses, 12(6):662.

Ferri, Filippo; Porporato, Federico; Rossi, Francesco; Enache, Daniela; Callegari, Carolina; Gerardi, Gabriele; Coppola, Luigi M; Contiero, Barbara; Crinò, Chiara; Kohan, Neda Ranjbar; Meli, Marina L; Lutz, Hans; Hofmann-Lehmann, Regina; Zini, Eric (2020). Treatment with class A CpG oligodeoxynucleotides in cats with naturally occurring feline parvovirus infection: a prospective study. Viruses, 12(6):640.

Hausmann, Annika; Russo, Giancarlo; Grossmann, Jonas; Zünd, Mirjam; Schwank, Gerald; Aebersold, Ruedi; Liu, Yansheng; Sellin, Mikael E; Hardt, Wolf-Dietrich (2020). Germ-free and microbiota-associated mice yield small intestinal epithelial organoids with equivalent and robust transcriptome/proteome expression phenotypes. Cellular Microbiology, 22(6):e13191.

Dietz, Julia; Kalinina, Olga V; Vermehren, Johannes; et al; Müllhaupt, Beat (2020). Resistance-associated substitutions in patients with chronic hepatitis C virus genotype 4 infection. Journal of Viral Hepatitis, 27(10):974-986.

Lukic, Dejana; Karygianni, Lamprini; Flury, Manuela; Attin, Thomas; Thurnheer, Thomas. Endodontic-Like Oral Biofilms as Models for Multispecies Interactions in Endodontic Diseases. 2020, University of Zurich, Faculty of Medicine.

Sahrmann, Philipp; Gilli, Fabienne; Wiedemeier, Daniel B; Attin, Thomas; Schmidlin, Patrick R; Karygianni, Lamprini (2020). The Microbiome of Peri-Implantitis: A Systematic Review and Meta-Analysis. Microorganisms, 8(5):661.

Knobloch, Paulina; Koliwer-Brandl, Hendrik; Arnold, Fabian M; Hanna, Nabil; Gonda, Imre; Adenau, Sophia; Personnic, Nicolas; Barisch, Caroline; Seeger, Markus A; Soldati, Thierry; Hilbi, Hubert (2020). Mycobacterium marinum produces distinct mycobactin and carboxymycobactin siderophores to promote growth in broth and phagocytes. Cellular Microbiology, 22(5):e13163.

Strandin, Tomas; Smura, Teemu; Ahola, Paula; Aaltonen, Kirsi; Sironen, Tarja; Hepojoki, Jussi; Eckerle, Isabella; Ulrich, Rainer G; Vapalahti, Olli; Kipar, Anja; Forbes, Kristian M (2020). Orthohantavirus isolated in reservoir host cells displays minimal genetic changes and retains wild-type infection properties. Viruses, 12(4):457.

Röhrig, Christian; Huemer, Markus; Lorgé, Dominique; Luterbacher, Samuel; Phothaworn, Preeda; Schefer, Christopher; Sobieraj, Anna M; Zinsli, Léa V; Mairpady Shambat, Srikanth; Leimer, Nadja; Keller, Anja P; Eichenseher, Fritz; Shen, Yang; Korbsrisate, Sunee; Zinkernagel, Annelies S; Loessner, Martin J; Schmelcher, Mathias (2020). Targeting hidden pathogens: cell-penetrating enzybiotics eradicate intracellular drug-resistant staphylococcus aureus. mBio, 11(2):e00209-e00220.

Korzyukov, Yegor; Iheozor-Ejiofor, Rommel; Levanov, Lev; Smura, Teemu; Hetzel, Udo; Szirovicza, Leonora; de la Torre, Juan Carlos; Martinez-Sobrido, Luis; Kipar, Anja; Vapalahti, Olli; Hepojoki, Jussi (2020). Differences in tissue and species tropism of reptarenavirus species studied by vesicular stomatitis virus pseudotypes. Viruses, 12(4):E395.

Ertuğrul, Bülent; Uçkay, İlker; Schöni, Madlaina; Peter-Riesch, Bettina; Lipsky, Benjamin A (2020). Management of diabetic foot infections in the light of recent literature and new international guidelines. Expert Review of Anti-Infective Therapy, 18(4):293-305.

Argenta, Fernando Froner; Hepojoki, Jussi; Smura, Teemu; Szirovicza, Leonora; Hammerschmitt, Márcia Elisa; Driemeier, David; Kipar, Anja; Hetzel, Udo (2020). Identification of reptarenaviruses, hartmaniviruses, and a novel chuvirus in captive native Brazilian Boa Constrictors with boid inclusion body disease. Journal of Virology, 94(11):e00001-20.

Caduff, Nicole; McHugh, Donal; Murer, Anita; Rämer, Patrick; Raykova, Ana; Landtwing, Vanessa; Rieble, Lisa; Keller, Christian W; Prummer, Michael; Hoffmann, Laurent; Lam, Janice K P; Chiang, Alan K S; Raulf, Friedrich; Azzi, Tarik; Berger, Christoph; Rubic-Schneider, Tina; Traggiai, Elisabetta; Lünemann, Jan D; Kammüller, Michael; Münz, Christian (2020). Immunosuppressive FK506 treatment leads to more frequent EBV-associated lymphoproliferative disease in humanized mice. PLoS Pathogens, 16(4):e1008477.

Krauss, Jochen; Vikuk, Veronika; Young, Carolyn A; Krischke, Markus; Mueller, Martin J; Baerenfaller, Katja (2020). Epichloë Endophyte Infection Rates and Alkaloid Content in Commercially Available Grass Seed Mixtures in Europe. Microorganisms, 8(4):498.

Shrestha, Neeta; Tobler, Kurt; Uster, Stephanie; Sigrist-Nagy, Romina; Hierweger, Melanie Michaela; Ackermann, Mathias (2020). Ovine herpesvirus 2 encodes a previously unrecognized protein, pOv8.25, that targets mitochondria and triggers apoptotic cell death. Journal of Virology, 94(8):e01536-19.

Swart, A Leoni; Steiner, Bernhard; Gomez-Valero, Laura; Schütz, Sabina; Hannemann, Mandy; Janning, Petra; Irminger, Michael; Rothmeier, Eva; Buchrieser, Carmen; Itzen, Aymelt; Panse, Vikram Govind; Hilbi, Hubert (2020). Divergent Evolution of Legionella RCC1 Repeat Effectors Defines the Range of Ran GTPase Cycle Targets. mBio, 11(2):e00405-20.

Haveri, Anu; Smura, Teemu; Kuivanen, Suvi; Österlund, Pamela; Hepojoki, Jussi; Ikonen, Niina; Pitkäpaasi, Marjaana; Blomqvist, Soile; Rönkkö, Esa; Kantele, Anu; Strandin, Tomas; Kallio-Kokko, Hannimari; Mannonen, Laura; Lappalainen, Maija; Broas, Markku; Jiang, Miao; Siira, Lotta; Salminen, Mika; Puumalainen, Taneli; Sane, Jussi; Melin, Merit; Vapalahti, Olli; Savolainen-Kopra, Carita (2020). Serological and molecular findings during SARS-CoV-2 infection: the first case study in Finland, January to February 2020. Eurosurveillance, 25(11):2000266.

Szirovicza, Leonora; Hetzel, Udo; Kipar, Anja; Martinez-Sobrido, Luis; Vapalahti, Olli; Hepojoki, Jussi (2020). Snake deltavirus utilizes envelope proteins of different viruses to generate infectious particles. mBio, 11(2):e03250-19.

Thoms, Franziska; Haas, Stefanie; Erhart, Aline; Nett, Claudia S; Rüfenacht, Silvia; Graf, Nicole; Strods, Arnis; Patil, Gauravraj; Leenadevi, Thonur; Fontaine, Michael C; Toon, Lindsey A; Jennings, Gary T; Senti, Gabriela; Kündig, Thomas M; Bachmann, Martin F (2020). Immunization of Cats against Fel d 1 Results in Reduced Allergic Symptoms of Owners. Viruses, 12(3):288.

Cernikova, Lenka; Faso, Carmen; Hehl, Adrian B (2020). Phosphoinositide-binding proteins mark, shape and functionally modulate highly-diverged endocytic compartments in the parasitic protist Giardia lamblia. PLoS Pathogens, 16(2):e1008317.

Wist, Valerie; Morach, Marina; Schneeberger, Marianne; Cernela, Nicole; Stevens, Marc J A; Zurfluh, Katrin; Stephan, Roger; Nüesch-Inderbinen, Magdalena (2020). Phenotypic and genotypic traits of vancomycin-resistant enterococci from healthy food-producing animals. Microorganisms, 8(2):261.

Jang, Hyein; Gopinath, Gopal R; Eshwar, Athmanya; Srikumar, Shabarinath; Nguyen, Scott; Gangiredla, Jayanthi; Patel, Isha R; Finkelstein, Samantha B; Negrete, Flavia; Woo, JungHa; Lee, YouYoung; Fanning, Séamus; Stephan, Roger; Tall, Ben D; Lehner, Angelika (2020). The secretion of toxins and other exoproteins of cronobacter: role in virulence, adaption, and persistence. Microorganisms, 8(2):229.

Hüppi, Linda; Ruggli, Nicolas; Python, Sylvie; Hoop, Richard; Albini, Sarah; Grund, Christian; Vögtlin, Andrea (2020). Experimental pigeon paramyxovirus-1 infection in chicken: evaluation of infectivity, clinical and pathological manifestations and diagnostic methods. Journal of General Virology, 101(2):156-167.

Krishnan, Aarti; Kloehn, Joachim; Lunghi, Matteo; Chiappino-Pepe, Anush; Waldman, Benjamin S; Nicolas, Damien; Varesio, Emmanuel; Hehl, Adrian B; Lourido, Sebastian; Hatzimanikatis, Vassily; Soldati-Favre, Dominique (2020). Functional and computational genomics reveal unprecedented flexibility in stage-specific toxoplasma metabolism. Cell Host & Microbe, 27(2):290-306.

Buttafuoco, Antonino; Michaelsen, Kevin; Tobler, Kurt; Ackermann, Mathias; Fraefel, Cornel; Eichwald, Catherine (2020). Conserved rotavirus NSP5 and VP2 domains interact and affect viroplasm. Journal of Virology, 94(7):e01965-19.

Asare, Paul Tetteh; Zurfluh, Katrin; Greppi, Anna; Lynch, Denise; Schwab, Clarissa; Stephan, Roger; Lacroix, Christophe (2020). Reuterin demonstrates potent antimicrobial activity against a broad panel of human and poultry meat Campylobacter spp. isolates. Microorganisms, 8(1):78.

Díaz-Menéndez, Marta; Esteban, Elena Trigo; Ujiie, Mugen; Calleri, Guido; Rothe, Camilla; Malvy, Denis; Nicastri, Emanuele; Bissinger, Alfred L; Grandadam, Marc; Alpern, Jonathan D; Gobbi, Federico; Schlagenhauf, Patricia; Duvignaud, Alexandre; Javelle, Emilie; Nakamoto, Takato; Antinori, Spinello; Hamer, Davidson H (2020). Travel-associated chikungunya acquired in Myanmar in 2019. Eurosurveillance, 25(1):1900721.

Karakus, Umut; Pohl, Marie O; Stertz, Silke (2020). Breaking the convention: Sialoglycan variants, Co-receptors and Alternative Receptors for Influenza A Virus Entry. Journal of Virology, 94(4):e01357-19.

Veronesi, Eva; Darpel, Karin; Gubbins, Simon; Batten, Carrie; Nomikou, Kyriaki; Mertens, Peter; Carpenter, Simon (2020). Diversity of transmission outcomes following co-infection of sheep with strains of bluetongue virus serotype 1 and 8. Microorganisms, 8(6):851.

2019

Nur, Selim; Sparber, Florian; Lemberg, Christina; Guiducci, Eva; Schweizer, Tiziano A; Zwicky, Pascale; Becher, Burkhard; LeibundGut-Landmann, Salomé (2019). IL-23 supports host defense against systemic Candida albicans infection by ensuring myeloid cell survival. PLoS Pathogens, 15(12):e1008115.

Malbon, Alexandra J; Fonfara, Sonja; Meli, Marina L; Hahn, Shelley; Egberink, Herman; Kipar, Anja (2019). Feline infectious peritonitis as a systemic inflammatory disease: contribution of liver and heart to the pathogenesis. Viruses, 11(12):E1144.

Münz, Christian (2019). The Role of Dendritic Cells in Immune Control and Vaccination against $y$-Herpesviruses. Viruses, 11(12):E1125.

Hernandez, Matthew M; Fahrny, Audrey; Jayaprakash, Anitha; Gers-Huber, Gustavo; Dillon-White, Marsha; Audigé, Annette; Mulder, Lubbertus C F; Sachidanandam, Ravi; Speck, Roberto F; Simon, Viviana (2019). Impact of suboptimal APOBEC3G neutralization on the emergence of HIV drug resistance in humanized mice. Journal of Virology, 94(5):0.

Buzibye, Allan; Musaazi, Joseph; von Braun, Amrei; Nanzigu, Sarah; Sekaggya-Wiltshire, Christine; Kambugu, Andrew; Fehr, Jan; Lamorde, Mohammed; Gutteck, Ursula; Muller, Daniel; Sowinski, Stefanie; Reynolds, Steven J; Castelnuovo, Barbara (2019). Antiretroviral concentration measurements as an additional tool to manage virologic failure in resource limited settings: a case control study. AIDS Research and Therapy, 16(1):39.

Work, Thierry M; Dagenais, Julie; Willimann, Anna; Balazs, George; Mansfield, Kate; Ackermann, Mathias (2019). Differences in antibody responses against Chelonid Alphaherpesvirus 5 (ChHV5) suggest differences in virus biology in ChHV5-seropositive green turtles from Hawaii and ChHV5-seropositive green turtles from Florida. Journal of Virology, 94(4):e01658-19.

Wambui, Joseph; Njage, Patrick Murigu Kamau; Tasara, Taurai; Buys, Elna Maria (2019). Meta-analysis and meta-regression indicate dynamic prevalence and moderators of foodborne pathogens in African indigenous fermented milk. Microorganisms, 7(11):563.

Martinet, Jean-Philippe; Ferté, Hubert; Failloux, Anna-Bella; Schaffner, Francis; Depaquit, Jérôme (2019). Mosquitoes of North-Western Europe as potential vectors of Arboviruses: a review. Viruses, 11(11):E1059.

Studer, Nadine; Lutz, Hans; Saegerman, Claude; Gönczi, Enikő; Meli, Marina L; Boo, Gianluca; Hartmann, Katrin; Hosie, Margaret J; Moestl, Karin; Tasker, Séverine; Belák, Sándor; Lloret, Albert; Boucraut-Baralon, Corine; Egberink, Herman F; Pennisi, Maria-Grazia; Truyen, Uwe; Frymus, Tadeusz; Thiry, Etienne; Marsilio, Fulvio; Addie, Diane; Hochleithner, Manfred; Tkalec, Filip; Vizi, Zsuzsanna; Brunetti, Anna; Georgiev, Boyko; Ludwig-Begall, Louisa F; Tschuor, Flurin; Mooney, Carmel T; Eliasson, Catarina; Orro, Janne; Johansen, Helle; Juuti, Kirsi; Krampl, Igor; Kovalenko, Kaspars; Šengaut, Jakov; Sobral, Cristina; Borska, Petra; Kovaříková, Simona; Hofmann-Lehmann, Regina (2019). Pan-European study on the prevalence of the feline leukaemia virus infection - reported by the European Advisory Board on Cat Diseases (ABCD Europe). Viruses, 11(11):E993.

Spiri, Andrea Monika; Meli, Marina L; Riond, Barbara; Herbert, Imogen; Hosie, Margaret J; Hofmann-Lehmann, Regina (2019). Environmental contamination and hygienic measures after feline calicivirus field strain infections of cats in a research facility. Viruses, 11(10):E958.

Horlbog, Jule Anna; Stevens, Marc J A; Stephan, Roger; Guldimann, Claudia (2019). Global transcriptional response of three highly acid-tolerant field strains of listeria monocytogenes to HCl stress. Microorganisms, 7(10):455.

Papa, Guido; Venditti, Luca; Arnoldi, Francesca; Schraner, Elisabeth M; Potgieter, Christiaan; Borodavka, Alexander; Eichwald, Catherine; Burrone, Oscar R (2019). Recombinant rotaviruses rescued by reverse genetics reveal the role of NSP5 hyperphosphorylation in the assembly of viral factories. Journal of Virology, 94(1):e01110-e01119.

Greber, Urs F; Flatt, Justin W (2019). Adenovirus Entry: From Infection to Immunity. Annual Review of Virology, 6(1):annurev-virology.

Martínez, José L; Arnoldi, Francesca; Schraner, Elisabeth M; Eichwald, Catherine; Silva-Ayala, Daniela; Lee, Eunjoo; Sztul, Elizabeth; Burrone, Óscar R; López, Susana; Arias, Carlos F (2019). The guanine nucleotide exchange factor GBF1 participates in rotavirus replication. Journal of Virology, 93(19):October 2019 Volume 93 Issue 19 e01062-19.

Hepojoki, Satu; Kareinen, Lauri; Strandin, Tomas; Vaheri, Antti; Holthöfer, Harry; Mustonen, Jukka; Mäkelä, Satu; Hedman, Klaus; Vapalahti, Olli; Hepojoki, Jussi (2019). Urine and free immunoglobulin light chains as analytes for serodiagnosis of hantavirus infection. Viruses, 11(9):E809.

Wensing, Annemarie M; Calvez, Vincent; Ceccherini-Silberstein, Francesca; Charpentier, Charlotte; Günthard, Huldrych F; Paredes, Roger; Shafer, Robert W; Richman, Douglas D (2019). 2019 update of the drug resistance mutations in HIV-1. Topics in Antiviral Medicine, 27(3):111-121.

Nigg, Aurélien; Brilhante, Michael; Dazio, Valentina; Clément, Mathieu; Collaud, Alexandra; Gobeli Brawand, Stefanie; Willi, Barbara; Endimiani, Andrea; Schuller, Simone; Perreten, Vincent (2019). Shedding of OXA-181 carbapenemase-producing Escherichia coli from companion animals after hospitalisation in Switzerland: an outbreak in 2018. Eurosurveillance, 24(39):1900071.

Novacco, Marilisa; Kohan, Neda Ranjbar; Stirn, Martina; Meli, Marina L; Díaz-Sánchez, Adrian Alberto; Boretti, Felicitas S; Hofmann-Lehmann, Regina (2019). Prevalence, geographic distribution, risk factors and co-infections of feline gammaherpesvirus infections in domestic cats in Switzerland. Viruses, 11(8):E721.

Radoshitzky, Sheli R; Buchmeier, Michael J; Charrel, Rémi N; Clegg, J Christopher S; Gonzalez, Jean-Paul J; Günther, Stephan; Hepojoki, Jussi; Kuhn, Jens H; Lukashevich, Igor S; Romanowski, Víctor; Salvato, Maria S; Sironi, Manuela; Stenglein, Mark D; de la Torre, Juan Carlos (2019). ICTV virus taxonomy profile: arenaviridae. Journal of General Virology, 100(8):1200-1201.

Frankenfeld, Julia; Meili, Theres; Meli, Marina L; Riond, Barbara; Helfer-Hungerbuehler, A Katrin; Bönzli, Eva; Pineroli, Benita; Hofmann-Lehmann, Regina (2019). Decreased sensitivity of the serological detection of feline immunodeficiency virus infection potentially due to imported genetic variants. Viruses, 11(8):E697.

Sonzogni, Olmo; Millard, Anne-Laure; Taveira, Aline; Schneider, Mårten K J; Duo, Li; Speck, Roberto F; Wulf, Gerburg M; Mueller, Nicolas J (2019). Efficient Human Cytomegalovirus Replication in Primary Endothelial Cells Is SOCS3 Dependent. Intervirology, 62(2):80-89.

Kaufmann, Cindy; Stalder, Hanspeter; Sidler, Xaver; Renzullo, Sandra; Gurtner, Corinne; Grahofer, Alexander; Schweizer, Matthias (2019). Long-term circulation of Atypical Porcine Pestivirus (APPV) within Switzerland. Viruses, 11(7):E653.

Kuivanen, Suvi; Levanov, Lev; Kareinen, Lauri; Sironen, Tarja; Jääskeläinen, Anne J; Plyusnin, Ilya; Zakham, Fathiah; Emmerich, Petra; Schmidt-Chanasit, Jonas; Hepojoki, Jussi; Smura, Teemu; Vapalahti, Olli (2019). Detection of novel tick-borne pathogen, Alongshan virus, in Ixodes ricinus ticks, south-eastern Finland, 2019. Eurosurveillance, 24(27):1900394.

Patel, Sameera; Sinigaglia, Alessandro; Barzon, Luisa; Fassan, Matteo; Sparber, Florian; LeibundGut-Landmann, Salomé; Ackermann, Mathias (2019). Role of NS1 and TLR3 in pathogenesis and immunity of WNV. Viruses, 11(7):603.

Abudurexiti, Abulikemu; Adkins, Scott; Alioto, Daniela; Alkhovsky, Sergey V; Avšič-Županc, Tatjana; Ballinger, Matthew J; Bente, Dennis A; Beer, Martin; Bergeron, Éric; Blair, Carol D; Briese, Thomas; Buchmeier, Michael J; Burt, Felicity J; Calisher, Charles H; Cháng, Chénchén; Charrel, Rémi N; Choi, Il Ryong; Clegg, J Christopher S; de la Torre, Juan Carlos; de Lamballerie, Xavier; Dèng, Fēi; Di Serio, Francesco; Digiaro, Michele; Drebot, Michael A; Duàn, Xiǎoméi; Ebihara, Hideki; Elbeaino, Toufic; Ergünay, Koray; Fulhorst, Charles F; Garrison, Aura R; et al (2019). Taxonomy of the order Bunyavirales: update 2019. Archives of Virology, 164(7):1949-1965.

Abela, Irene A; Kadelka, Claus; Trkola, Alexandra (2019). Correlates of broadly neutralizing antibody development. Current opinion in HIV and AIDS, 14(4):279-285.

Koliwer-Brandl, Hendrik; Knobloch, Paulina; Barisch, Caroline; Welin, Amanda; Hanna, Nabil; Soldati, Thierry; Hilbi, Hubert (2019). Distinct Mycobacterium marinum phosphatases determine pathogen vacuole phosphoinositide pattern, phagosome maturation, and escape to the cytosol. Cellular Microbiology, 21(6):e13008.

Ramsauer, Anna Sophie; Kubacki, Jakub; Favrot, Claude; Ackermann, Mathias; Fraefel, Cornel; Tobler, Kurt (2019). RNA-seq analysis in equine papillomavirus type 2-positive carcinomas identifies affected pathways and potential cancer markers as well as viral gene expression and splicing events. Journal of General Virology, 100(6):985-998.

Schädler, Julia; Sigrist, Brigitte; Meier, Simone Martina; Albini, Sarah; Wolfrum, Nina (2019). Virus-like particles in a new vaccination approach against infectious laryngotracheitis. Journal of General Virology, 100(6):1013-1026.

Arnold, Isabelle C; Zhang, Xiaozhou; Artola-Boran, Mariela; Fallegger, Angela; Sander, Peter; Johansen, Pål; Müller, Anne (2019). BATF3-dependent dendritic cells drive both effector and regulatory T-cell responses in bacterially infected tissues. PLoS Pathogens, 15(6):e1007866.

Westman, Mark; Norris, Jacqueline; Malik, Richard; Hofmann-Lehmann, Regina; Harvey, Andrea; McLuckie, Alicia; Perkins, Martine; Schofield, Donna; Marcus, Alan; McDonald, Mike; Ward, Michael; Hall, Evelyn; Sheehy, Paul; Hosie, Margaret (2019). The diagnosis of Feline Leukaemia Virus (FeLV) infection in owned and group-housed rescue cats in Australia. Viruses, 11(6):E503.

Tall, Ben D; Gopinath, Gopal; Gangiredla, Jayanthi; Patel, Isha R; Fanning, Séamus; Lehner, Angelika (2019). Cronobacter Species. In: Doyle, MP; Diez-Gonzales, R; Hill, C. Food Microbiology: Fundamentals and Frontiers. Washington, 389-414.

Di Giallonardo, Francesca; Pinto, Angie N; Keen, Phillip; Shaik, Ansari; Carrera, Alex; Salem, Hanan; Telfer, Barbara; Cooper, Craig; Price, Karen; Selvey, Christine; Holden, Joanne; Bachmann, Nadine; Lee, Frederick J; Dwyer, Dominic E; Duchêne, Sebastián; Holmes, Edward C; Grulich, Andrew E; Kelleher, Anthony D (2019). Limited Sustained Local Transmission of HIV-1 CRF01_AE in New South Wales, Australia. Viruses, 11(5):482.

Wambui, Joseph; Stephan, Roger (2019). Relevant aspects of Clostridium estertheticum as a specific spoilage organism of vacuum-packed meat. Microorganisms, 7(5):142.

Ghazaryan, Hrachuhi; Babloyan, Ara; Sarkissian, Ashot; Davtyan, Karapet; Berger, Christoph (2019). Respiratory syncytial and influenza virus detecting rapid tests in children younger than 5 years of age in Armenia. Journal of Infection in Developing Countries, 13(05.1):075S-080S.

Carroll, Laura M; Gaballa, Ahmed; Guldimann, Claudia; Sullivan, Genevieve; Henderson, Lory O; Wiedmann, Martin (2019). Identification of novel mobilized colistin resistance gene mcr-9 in a multidrug-resistant, colistin-susceptible salmonella enterica serotype typhimurium isolate. mBio, 10(3):e00853-19.

Chatterjee, Bithi; Deng, Yun; Holler, Angelika; Núñez, Nicolás Gonzalo; Azzi, Tarik; Vanoaica, Liliana Danusia; Müller, Anne; Zdimerova, Hana; Antsiferova, Olga; Zbinden, Andrea; Capaul, Riccarda; Dreyer, Johannes H; Nadal, David; Becher, Burkhard; Robinson, Mark D; Stauss, Hans; Münz, Christian (2019). CD8+ T cells retain protective functions despite sustained inhibitory receptor expression during Epstein-Barr virus infection in vivo. PLoS Pathogens, 15(5):e1007748.

Euler, Zelda; Van Den Kerkhof, Tom L; Kouyos, Roger D; Tully, Damien C; Allen, Todd M; Trkola, Alexandra; Sanders, Rogier W; Schuitemaker, Hanneke; Van Gils, Marit J (2019). Lower Broadly Neutralizing Antibody Responses in Female Versus Male HIV-1 Infected Injecting Drug Users. Viruses, 11(4):E384.

Hetzel, Udo; Szirovicza, Leonóra; Smura, Teemu; Prähauser, Barbara; Vapalahti, Olli; Kipar, Anja; Hepojoki, Jussi (2019). Identification of a novel deltavirus in Boa Constrictors. mBio, 10(2):e00014-e00019.

Altobelli, Aleksandra; Bauer, Michael; Velez, Karelia; Cover, Timothy L; Müller, Anne (2019). Helicobacter pylori VacA Targets Myeloid Cells in the Gastric Lamina Propria To Promote Peripherally Induced Regulatory T-Cell Differentiation and Persistent Infection. mBio, 10(2):e00261.

Mulder, Annemieke Christine; Kroneman, Annelies; Franz, Eelco; Vennema, Harry; Tulen, Anna D; Takkinen, Johanna; Hofhuis, Agnetha; Adlhoch, Cornelia (2019). HEVnet: a One Health, collaborative, interdisciplinary network and sequence data repository for enhanced hepatitis E virus molecular typing, characterisation and epidemiological investigations. Eurosurveillance, 24(10):pii=1800407.

Vogler, Barbara Renate; Hartnack, Sonja; Ziegler, Ute; Lelli, Davide; Vögtlin, Andrea; Hoop, Richard; Albini, Sarah (2019). Resource-effective serosurveillance for the detection of West Nile Virus in Switzerland using abattoir samples of free-range laying hens. Vector Borne and Zoonotic Diseases, 19(3):222-224.

Sparber, Florian; De Gregorio, Corinne; Steckholzer, Simone; Ferreira, Filipa M; Dolowschiak, Tamas; Ruchti, Fiorella; Kirchner, Florian R; Mertens, Sarah; Prinz, Immo; Joller, Nicole; Buch, Thorsten; Glatz, Martin; Sallusto, Federica; LeibundGut-Landmann, Salomé (2019). The skin commensal yeast malassezia triggers a type 17 response that coordinates anti-fungal immunity and exacerbates skin inflammation. Cell Host & Microbe, 25(3):389-403.e6.

Graul, Małgorzata; Kisielnicka, Edyta; Rychłowski, Michał; Verweij, Marieke C; Tobler, Kurt; Ackermann, Mathias; Wiertz, Emmanuel J H J; Bieńkowska-Szewczyk, Krystyna; Lipińska, Andrea D (2019). Transmembrane regions of bovine herpesvirus 1-encoded UL49.5 and glycoprotein M regulate complex maturation and ER-Golgi trafficking. Journal of General Virology, 100(3):497-510.

Buckley, Catherine M; Heath, Victoria L; Guého, Aurélie; Bosmani, Cristina; Knobloch, Paulina; Sikakana, Phumzile; Personnic, Nicolas; Dove, Stephen K; Michell, Robert H; Meier, Roger; Hilbi, Hubert; Soldati, Thierry; Insall, Robert H; King, Jason S (2019). PIKfyve/Fab1 is required for efficient V-ATPase and hydrolase delivery to phagosomes, phagosomal killing, and restriction of Legionella infection. PLoS Pathogens, 15(2):e1007551.

Gautret, Philippe; Grobusch, Martin P; Schlagenhauf, Patricia (2019). Where do Eritrean migrants get infected with malaria? The importance of considering the migration route. Eurosurveillance, 24(6):pii=1900095.

Murer, Anita; Rühl, Julia; Zbinden, Andrea; Capaul, Riccarda; Hammerschmidt, Wolfgang; Chijioke, Obinna; Münz, Christian (2019). MicroRNAs of Epstein-Barr Virus Attenuate T-Cell-Mediated Immune Control In Vivo. mBio, 10:e01941-18.

Asgari, Samira; Chaturvedi, Nimisha; Scepanovic, Petar; Hämmerle, Christian; Semmo, Nasser; Giostra, Emiliano; Müllhaupt, Beat; Angus, Peter; Thompson, Alexander J; Moradpour, Darius; Fellay, Jacques (2019). Human genomics of acute liver failure due to hepatitis B virus infection: An exome sequencing study in liver transplant recipients. Journal of Viral Hepatitis, 26(2):271-277.

Delecluse, Susanne; Tsai, Ming-Han; Shumilov, Anatoliy; Bencun, Maja; Arrow, Sebastian; Beshirova, Aisha; Cottignies-Calamarte, Andréa; Lasitschka, Felix; Bulut, Olcay Cem; Münz, Christian; Zeier, Martin; Behrends, Uta; Delecluse, Henri-Jacques (2019). The Epstein-Barr virus induces the expression of the LPAM-1 integrin in B-cells in vitro and in vivo. Journal of Virology, 93(5):e01618-18.

2018

Rochat, Mary-Aude; Schlaepfer, Erika; Kuster, Stefan P; Li, Duo; Audige, Annette; Ivic, Sandra; Fahrny, Audrey; Speck, Roberto F (2018). Monitoring HIV DNA and cellular activation markers in HIV-infected humanized mice under cART. Virology Journal, 15:191.

Weber, Stephen; Steiner, Bernhard; Welin, Amanda; Hilbi, Hubert (2018). Legionella-Containing Vacuoles Capture PtdIns(4)-Rich Vesicles Derived from the Golgi Apparatus. mBio, 9(6):pii: e02420-18.

Knauf, Sascha; Gogarten, Jan F; Schuenemann, Verena J; De Nys, Hélène M; et al (2018). Nonhuman primates across sub-Saharan Africa are infected with the yaws bacterium Treponema pallidum subsp. pertenue. Emerging Microbes and Infections, 7(1):157.

Gomes, Margarida C; Tasrini, Yara; Subramoni, Sujatha; Agnoli, Kirsty; Feliciano, Joana R; Eberl, Leo; Sokol, Pamela; O'Callaghan, David; Vergunst, Annette C (2018). The afc antifungal activity cluster, which is under tight regulatory control of ShvR, is essential for transition from intracellular persistence of Burkholderia cenocepacia to acute pro-inflammatory infection. PLoS Pathogens, 14(12):e1007473.

Keller, Annika; Nuvolone, Mario; Abakumova, Irina; Chincisan, Andra; Reimann, Regina; Avar, Merve; Heinzer, Daniel; Hornemann, Simone; Wagner, Josephin; Kirschenbaum, Daniel; Voigt, Fabian F; Zhu, Caihong; Regli, Luca; Helmchen, Fritjof; Aguzzi, Adriano (2018). Prion pathogenesis is unaltered in a mouse strain with a permeable blood-brain barrier. PLoS Pathogens, 14(11):e1007424.

Keiser, O; Giudici, F; Müllhaupt, B; Junker, C; Dufour, J-F; Moradpour, D; Bruggmann, P; Terziroli, B; Semela, D; Brezzi, M; Bertisch, B; Estill, J; Negro, F; Spoerri, A; Swiss Hepatitis C Cohort Study; Swiss National Cohort Study Group (2018). Trends in hepatitis C-related mortality in Switzerland. Journal of Viral Hepatitis, (2):152-160.

Squarzanti, Diletta Francesca; Sorrentino, Rita; Landini, Manuela Miriam; Chiesa, Andrea; Pinato, Sabrina; Rocchio, Francesca; Mattii, Martina; Penengo, Lorenza; Azzimonti, Barbara (2018). Human papillomavirus type 16 E6 and E7 oncoproteins interact with the nuclear p53-binding protein 1 in an in vitro reconstructed 3D epithelium: new insights for the virus-induced DNA damage response. Virology Journal, 15(1):176.

Hepojoki, Jussi; Hepojoki, Satu; Smura, Teemu; Szirovicza, Leonóra; Dervas, Eva; Prähauser, Barbara; Nufer, Lisbeth; Schraner, Elisabeth M; Vapalahti, Olli; Kipar, Anja; Hetzel, Udo (2018). Characterization of Haartman Institute snake virus-1 (HISV-1) and HISV-like viruses—The representatives of genus Hartmanivirus, family Arenaviridae. PLoS Pathogens, 14(11):e1007415.

Bardelli, Marco; Frontzek, Karl; Simonelli, Luca; Hornemann, Simone; Pedotti, Mattia; Mazzola, Federica; Carta, Manfredi; Eckhardt, Valeria; D’Antuono, Rocco; Virgilio, Tommaso; González, Santiago F; Aguzzi, Adriano; Varani, Luca (2018). A bispecific immunotweezer prevents soluble PrP oligomers and abolishes prion toxicity. PLoS Pathogens, 14(10):e1007335.

Haller, Otto; Arnheiter, Heinz; Pavlovic, Jovan; Staeheli, Peter (2018). The Discovery of the Antiviral Resistance Gene Mx: A Story of Great Ideas, Great Failures, and Some Success. Annual Review of Virology, 5(1):33-51.

Cernikova, Lenka; Faso, Carmen; Hehl, Adrian B (2018). Five facts about Giardia lamblia. PLoS Pathogens, 14(9):e1007250.

Cook, Helen Victoria; Doncheva, Nadezhda Tsankova; Szklarczyk, Damian; von Mering, Christian; Jensen, Lars Juhl (2018). Viruses.STRING: A Virus-Host Protein-Protein Interaction Database. Viruses, 10(10):519.

Roulin, Pascal S; Murer, Luca P; Greber, Urs F (2018). A single point mutation in the rhinovirus 2B protein reduces the requirement for phosphatidylinositol 4-kinase class 3beta in viral replication. Journal of Virology, 92(23):e01462-18.

Maes, Piet; Alkhovsky, Sergey V; Bào, Yīmíng; Beer, Martin; Birkhead, Monica; Briese, Thomas; Buchmeier, Michael J; Calisher, Charles H; Charrel, Rémi N; Choi, Il Ryong; Clegg, Christopher S; de la Torre, Juan Carlos; Delwart, Eric; DeRisi, Joseph L; Di Bello, Patrick L; Di Serio, Francesco; Digiaro, Michele; Dolja, Valerian V; Drosten, Christian; Druciarek, Tobiasz Z; Du, Jiang; Ebihara, Hideki; Elbeaino, Toufic; Gergerich, Rose C; Gillis, Amethyst N; Gonzalez, Jean-Paul J; Haenni, Anne-Lise; Hepojoki, Jussi; Hetzel, Udo; Hồ, Thiện; et al (2018). Taxonomy of the family Arenaviridae and the order Bunyavirales: update 2018. Archives of Virology, 163(8):2295-2310.

Goossens, N; de Vito, C; Mangia, A; Clément, S; Cenderello, G; Barrera, F; D'Ambrosio, R; Coppola, N; Zampino, R; Stanzione, M; Adinolfi, L E; Wedemeyer, H; Semmo, N; Müllhaupt, B; Semela, D; Malinverni, R; Moradpour, D; Heim, M; Trincucci, G; Rubbia-Brandt, L; Negro, F; BOSTIC Study Group (2018). Effect of hepatitis B virus on steatosis in hepatitis C virus co-infected subjects: A multi-centre study and systematic review. Journal of Viral Hepatitis, 25(8):920-929.

Subbaraman, Harini; Schanz, Merle; Trkola, Alexandra (2018). Broadly neutralizing antibodies: What is needed to move from a rare event in HIV-1 infection to vaccine efficacy? Retrovirology, 15(1):52.

Eshwar, Athmanya Konegadde; Wolfrum, Nina; Stephan, Roger; Fanning, Séamus; Lehner, Angelika (2018). Interaction of matrix metalloprotease-9 and Zpx in Cronobacter turicensis LMG 23827T mediated infections in the zebrafish model. Cellular Microbiology, 20(11):e12888.

Ryom, Lene; Lundgren, Jens D; El-Sadr, Wafaa; Reiss, Peter; Kirk, Ole; Law, Matthew; Phillips, Andrew; Weber, Rainer; Fontas, Eric; d' Arminio Monforte, Antonella; De Wit, Stéphane; Dabis, Francois; Hatleberg, Camilla I; Sabin, Caroline; Mocroft, Amanda (2018). Cardiovascular disease and use of contemporary protease inhibitors: the D:A:D international prospective multicohort study. The Lancet : HIV, 5(6):e291-e300.

Schuenemann, Verena J; Avanzi, Charlotte; Krause-Kyora, Ben; Seitz, Alexander; Herbig, Alexander; Inskip, Sarah; Bonazzi, Marion; Reiter, Ella; Urban, Christian; Dangvard Pedersen, Dorthe; Taylor, G Michael; Singh, Pushpendra; Stewart, Graham R; Velemínský, Petr; Likovsky, Jakub; Marcsik, Antónia; Molnár, Erika; Pálfi, György; Mariotti, Valentina; Riga, Alessandro; Belcastro, M Giovanna; Boldsen, Jesper L; Nebel, Almut; Mays, Simon; Donoghue, Helen D; Zakrzewski, Sonia; Benjak, Andrej; Nieselt, Kay; Cole, Stewart T; Krause, Johannes (2018). Ancient genomes reveal a high diversity of Mycobacterium leprae in medieval Europe. PLoS Pathogens, 14(5):e1006997.

Laut, Kamilla; Shepherd, Leah; Radoi, Roxana; Karpov, Igor; Parczewski, Milosz; Mussini, Cristina; Maltez, Fernando; Losso, Marcelo; Chkhartishvili, Nikoloz; Elinav, Hila; Kovari, Helen; et al (2018). Persistent disparities in antiretroviral treatment (ART) coverage and virological suppression across Europe, 2004 to 2015. Eurosurveillance, 23(21):1700382.

Witte, Robert; Andriasyan, Vardan; Georgi, Fanny; Yakimovich, Artur; Greber, Urs F (2018). Concepts in Light Microscopy of Viruses. Viruses, 10(4):E202.

Murer, Anita; McHugh, Donal; Caduff, Nicole; Kalchschmidt, Jens; Barros, Mario; Zbinden, Andrea; Capaul, Riccarda; Niedobitek, Gerald; Allday, Martin; Chijioke, Obinna; Münz, Christian (2018). EBV persistence without its EBNA3A and 3C oncogenes in vivo. PLoS Pathogens, 14(4):e1007039.

Wang, I-Hsuan; Burckhardt, Christoph J; Yakimovich, Artur; Greber, Urs F (2018). Imaging, Tracking and Computational Analyses of Virus Entry and Egress with the Cytoskeleton. Viruses, 10(4):1-31.

Gossner, Céline M; Haussig, Joana M; de Bellegarde de Saint Lary, Chiara; Kaasik Aaslav, Kaja; Schlagenhauf, Patricia; Sudre, Bertrand (2018). Increased risk of yellow fever infections among unvaccinated European travellers due to ongoing outbreak in Brazil, July 2017 to March 2018. Eurosurveillance, 23(11):online.

Stichling, Nicole; Suomalainen, Maarit; Flatt, Justin W; Schmid, Markus; Pacesa, Martin; Hemmi, Silvio; Jungraithmayr, Wolfgang; Maler, Mareike D; Freudenberg, Marina A; Plückthun, Andreas; May, Tobias; Köster, Mario; Fejer, György; Greber, Urs F (2018). Lung macrophage scavenger receptor SR-A6 (MARCO) is an adenovirus type-specific virus entry receptor. PLoS Pathogens, 14(3):e1006914.

Morger, Damien; Zosel, Franziska; Bühlmann, Martin; Züger, Sara; Mittelviefhaus, Maximilian; Schuler, Benjamin; Luban, Jeremy; Grütter, Markus G (2018). The Three-Fold Axis of the HIV-1 Capsid Lattice Is the Species-Specific Binding Interface for TRIM5α. Journal of Virology, 92(5):e01541-17.

Stertz, Silke; Paul Duprex, W; Harris, Mark (2018). A novel mutation in the neuraminidase gene of the 2009 pandemic H1N1 influenza A virus confers multidrug resistance. Journal of General Virology, 99(3):275-276.

Eichwald, Catherine; Ackermann, Mathias; Nibert, Max L (2018). The dynamics of both filamentous and globular mammalian reovirus viral factories rely on the microtubule network. Virology, 518:77-86.

Kühnert, Denise; Kouyos, Roger; Shirreff, George; Pečerska, Jūlija; Scherrer, Alexandra U; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Günthard, Huldrych F; Stadler, Tanja; Bonhoeffer, Sebastian; Swiss HIV Cohort Study (2018). Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics. PLoS Pathogens, 14(2):e1006895.

Slekiene, Jurgita; Mosler, Hans-Joachim (2018). Characterizing the Last Latrine Nonowners in Rural Malawi. American Journal of Tropical Medicine and Hygiene, 98(1):295-299.

Meli, Marina L; Berger, A; Willi, Barbara; Spiri, Andrea Monika; Riond, Barbara; Hofmann-Lehmann, Regina (2018). Molecular detection of feline calicivirus in clinical samples: a study comparing its detection by RT-qPCR directly from swabs and after virus isolation. Journal of Virological Methods, 251:54-60.

Reh, Lucia; Magnus, Carsten; Kadelka, Claus; Kühnert, Denise; Uhr, Therese; Weber, Jacqueline; Morris, Lynn; Moore, Penny L; Trkola, Alexandra (2018). Phenotypic deficits in the HIV-1 envelope are associated with the maturation of a V2-directed broadly neutralizing antibody lineage. PLoS Pathogens, 14:e1006825.

Trejo-Cerro, Óscar; Eichwald, Catherine; Schraner, Elisabeth M; Silva-Ayala, Daniela; López, Susana; Arias, Carlos F (2018). Actin-dependent non-lytic rotavirus exit and infectious virus morphogenetic pathway in non-polarized cells. Journal of Virology, 92(6):e02076-17.

Brozy, Johannes; Schlaepfer, Erika; Mueller, Christina K S; Rochat, Mary-Aude; Rampini, Silvana K; Myburgh, Renier; Raum, Tobias; Kufer, Peter; Baeuerle, Patrick A; Muenz, Markus; Speck, Roberto F (2018). Antiviral Activity of HIV gp120-Targeting Bispecific T Cell Engager Antibody Constructs. Journal of Virology, 92(14):1-13.

Rota, Rosana P; Palacios, Carlos A; Temprana, C Facundo; Argüelles, Marcelo H; Mandile, Marcelo G; Mattion, Nora; Laimbacher, Andrea S; Fraefel, Cornel; Castello, Alejandro A; Glikmann, Graciela (2018). Evaluation of the immunogenicity of a recombinant HSV-1 vector expressing human group C rotavirus VP6 protein. Journal of Virological Methods, 256:24-31.

Gopinath, G R; Chase, H R; Gangiredla, J; Eshwar, A; Jang, H; Patel, I; Negrete, F; Finkelstein, S; Park, E; Chung, T J; Yoo, Y J; Woo, J H; Lee, Y Y; Park, J; Choi, H; Jeong, S; Jun, S; Kim, M; Lee, C; Jeong, H; Fanning, S; Stephan, Roger; Iversen, C; Reich, F; Klein, G; Lehner, Angelika; Tall, B D (2018). Genomic characterization of malonate positive Cronobacter sakazakii serotype O:2, sequence type 64 strains, isolated from clinical, food, and environment samples. Gut Pathogens, 10:11.

Koch, C; Ramsauer, A S; Drögemüller, M; Ackermann, M; Gerber, V; Tobler, K (2018). Genomic comparison of bovine papillomavirus 1 isolates from bovine, equine and asinine lesional tissue samples. Virus Research, 244:6-12.

Meir, Juliane; Hartmann, Elena; Eckstein, Marie-Therese; Guiducci, Eva; Kirchner, Florian; Rosenwald, Andreas; LeibundGut-Landmann, Salomé; Pérez, J Christian (2018). Identification of Candida albicans regulatory genes governing mucosal infection. Cellular Microbiology, 20(8):e12841.

Eichwald, Catherine; De Lorenzo, Giuditta; Schraner, Elisabeth M; Papa, Guido; Bollati, Michela; Swuec, Paolo; de Rosa, Matteo; Milani, Mario; Mastrangelo, Eloise; Ackermann, Mathias; Burrone, Oscar R; Arnoldi, Francesca (2018). Identification of a small molecule that compromises the structural integrity of viroplasms and rotavirus double-layered particles. Journal of Virology, 92(3):e01943-17.

Sparber, Florian; Dolowschiak, Tamas; Mertens, Sarah; Lauener, Laura; Clausen, Björn E; Joller, Nicole; Stoitzner, Patrizia; Tussiwand, Roxane; LeibundGut-Landmann, Salomé (2018). Langerin+ DCs regulate innate IL-17 production in the oral mucosa during Candida albicans-mediated infection. PLoS Pathogens, 14(5):e1007069.

Salazar-Vizcaya, L; Kouyos, R D; Fehr, J; Braun, D; Estill, J; Bernasconi, E; Delaloye, J; Stöckle, M; Schmid, P; Rougemont, M; Wandeler, G; Günthard, H F; Keiser, O; Rauch, A; Swiss HIV Cohort Study (2018). On the potential of a short-term intensive intervention to interrupt HCV transmission in HIV-positive men who have sex with men: A mathematical modelling study. Journal of Viral Hepatitis, 25(1):10-18.

Perraki, Artemis; Gronnier, Julien; Gouguet, Paul; Boudsocq, Marie; Deroubaix, Anne-Flore; Simon, Vincent; German-Retana, Sylvie; Legrand, Anthony; Habenstein, Birgit; Zipfel, Cyril; Bayer, Emmanuelle; Mongrand, Sébastien; Germain, Véronique (2018). REM1.3's phospho-status defines its plasma membrane nanodomain organization and activity in restricting PVX cell-to-cell movement. PLoS Pathogens, 14(11):e1007378.

Turkington, H L; Juozapaitis, M; Tsolakos, N; Corrales-Aguilar, E; Schwemmle, M; Hale, B G (2018). Unexpected Functional Divergence of Bat Influenza Virus NS1 Proteins. Journal of Virology, 92(5):e02097-17.

2017

Wensing, Annemarie M; Calvez, Vincent; Günthard, Huldrych F; Johnson, Victoria A; Paredes, Roger; Pillay, Deenan; Shafer, Robert W; Richman, Douglas D (2017). 2017 Update of the Drug Resistance Mutations in HIV-1. Topics in Antiviral Medicine, 24(4):132-133.

Goniotaki, Despoina; Lakkaraju, Asvin K K; Shrivastava, Amulya N; Bakirci, Pamela; Sorce, Silvia; Senatore, Assunta; Marpakwar, Rajlakshmi; Hornemann, Simone; Gasparini, Fabrizio; Triller, Antoine; Aguzzi, Adriano (2017). Inhibition of group-I metabotropic glutamate receptors protects against prion toxicity. PLoS Pathogens, 13(11):e1006733.

Filoni, Claudia; Helfer-Hungerbuehler, A Katrin; Catão-Dias, José Luiz; Marques, Mara Cristina; Torres, Luciana Neves; Reinacher, Manfred; Hofmann-Lehmann, Regina (2017). Putative progressive and abortive feline leukemia virus infection outcomes in captive jaguarundis (Puma yagouaroundi). Virology Journal, 14(1):226.

Münz, Christian (2017). Autophagy Proteins in Viral Exocytosis and Anti-Viral Immune Responses. Viruses, 9(10):E288.

Lopes, A M; Domingues, P; Zell, R; Hale, B G (2017). Structure-Guided Functional Annotation of the Influenza A Virus NS1 Protein Reveals Dynamic Evolution of the p85β-Binding Site during Circulation in Humans. Journal of Virology, 91(21):e01081-17.

Escoll, Pedro; Song, Ok-Ryul; Viana, Flávia; Steiner, Bernhard; Lagache, Thibault; Olivo-Marin, Jean-Christophe; Impens, Francis; Brodin, Priscille; Hilbi, Hubert; Buchrieser, Carmen (2017). Legionella pneumophila Modulates Mitochondrial Dynamics to Trigger Metabolic Repurposing of Infected Macrophages. Cell Host & Microbe, 22(3):302-316.e7.

Niewoehner, Ole; Jinek, Martin (2017). Specialized weaponry: how a type III-A CRISPR-cas system excels at combating phages. Cell Host & Microbe, 22(3):258-259.

Patzina, C; Botting, C H; García-Sastre, A; Randall, R E; Hale, B G (2017). Human interactome of the influenza B virus NS1 protein. Journal of General Virology, 98(9):2267-2273.

Rissanen, Ilona; Stass, Robert; Zeltina, Antra; Li, Sai; Hepojoki, Jussi; Harlos, Karl; Gilbert, Robert J C; Huiskonen, Juha T; Bowden, Thomas A (2017). Structural transitions of the conserved and metastable hantaviral glycoprotein envelope. Journal of Virology, 91(21):e00378-17.

Pacesa, Martin; Hendrickx, Rodinde; Bieri, Manuela; Flatt, Justin W; Greber, Urs F; Hemmi, Silvio (2017). Small-size recombinant adenoviral hexon protein fragments for the production of virus-type specific antibodies. Virology Journal, 14(1):158-171.

Maler, Mareike D; Nielsen, Peter J; Stichling, Nicole; Cohen, Idan; Ruzsics, Zsolt; Wood, Connor; Engelhard, Peggy; Suomalainen, Maarit; Gyory, Ildiko; Huber, Michael; Müller-Quernheim, Joachim; Schamel, Wolfgang W A; Gordon, Siamon; Jakob, Thilo; Martin, Stefan F; Jahnen-Dechent, Willi; Greber, Urs F; Freudenberg, Marina A; Fejer, György (2017). Key role of the scavenger receptor MARCO in mediating adenovirus infection and subsequent innate responses of macrophages. mBio, 8(4):e00670-17.

Münz, Christian (2017). Humanized mouse models for Epstein Barr virus infection. Current Opinion in Virology, 25:113-118.

Tarr, Philip E; Kovari, Helen (2017). Another statin option in HIV. The Lancet : HIV, 4(7):e278-e279.

McHugh, Donal; Caduff, Nicole; Barros, Mario Henrique M; Rämer, Patrick C; Raykova, Ana; Murer, Anita; Landtwing, Vanessa; Quast, Isaak; Styles, Christine T; Spohn, Michael; Fowotade, Adeola; Delecluse, Henri-Jacques; Papoudou-Bai, Alexandra; Lee, Yong-Moon; Kim, Jin-Man; Middeldorp, Jaap; Schulz, Thomas F; Cesarman, Ethel; Zbinden, Andrea; Capaul, Riccarda; White, Robert E; Allday, Martin J; Niedobitek, Gerald; Blackbourn, David J; Grundhoff, A; Münz, Christian (2017). Persistent KSHV Infection Increases EBV-Associated Tumor Formation In Vivo via Enhanced EBV Lytic Gene Expression. Cell Host & Microbe, 22(1):61-73.

Yakimovich, Artur; Huttunen, Moona; Zehnder, Benno; Coulter, Lesley J; Gould, Victoria; Schneider, Christoph; Kopf, Manfred; McInnes, Colin J; Greber, Urs F; Mercer, Jason (2017). Inhibition of Poxvirus Gene Expression and Genome Replication by Bisbenzimide Derivatives. Journal of Virology:00838-17.

Kok, Yik Lim; Ciuffi, Angela; Metzner, Karin J (2017). Unravelling HIV-1 latency, one cell at a time. Trends in Microbiology, 25(11):932-941.

Ostapchuk, Philomena; Suomalainen, Maarit; Zheng, Yueting; Boucke, Karin; Greber, Urs F; Hearing, Patrick (2017). The adenovirus major core protein VII is dispensable for virion assembly but is essential for lytic infection. PLoS Pathogens, 13(6):e1006455.

Bachmann, Nadine; Turk, Teja; Kadelka, Claus; Marzel, Alex; Shilaih, Mohaned; Böni, Jürg; Aubert, Vincent; Klimkait, Thomas; Leventhal, Gabriel E; Günthard, Huldrych F; Kouyos, Roger; Swiss HIV Cohort Study (2017). Parent-offspring regression to estimate the heritability of an HIV-1 trait in a realistic setup. Retrovirology, 14(1):33.

Brandenberg, Oliver F; Magnus, Carsten; Rusert, Peter; Günthard, Huldrych F; Regoes, Roland Robert; Trkola, Alexandra (2017). Predicting HIV-1 transmission and antibody neutralization efficacy in vivo from stoichiometric parameters. PLoS Pathogens, 13(5):e1006313.

Arand, Michael; Marowsky, Anne (2017). Misclassification of PfEH1 and PfEH2 as epoxide hydrolases. mBio, 8(2):04-17.

Beauparlant, David; Rusert, Peter; Magnus, Carsten; Kadelka, Claus; Weber, Jacqueline; Uhr, Therese; Zagordi, Osvaldo; Oberle, Corinna; Duenas-Decamp, Maria J; Clapham, Paul R; Metzner, Karin J; Günthard, Huldrych F; Trkola, Alexandra (2017). Delineating CD4 dependency of HIV-1: Adaptation to infect low level CD4 expressing target cells widens cellular tropism but severely impacts on envelope functionality. PLoS Pathogens, 13(3):e1006255.

Oberle, Corinna S; Magnus, Carsten; Joos, Beda; Rusert, Peter; Beauparlant, David; Kouyos, Roger; Trkola, Alexandra; Metzner, Karin J; Günthard, Huldrych F (2017). Reply to correspondence 'Conserved signatures indicate HIV-1 transmission is under strong selection and thus is not a "stochastic" process' by Gonzalez et al., Retrovirology 2017. Retrovirology, 14(1):14.

Huber, M; Metzner, K J; Geissberger, F D; Shah, C; Leemann, C; Klimkait, T; Böni, J; Trkola, A; Zagordi, O (2017). MinVar: A rapid and versatile tool for HIV-1 drug resistance genotyping by deep sequencing. Journal of Virological Methods, 240:7-13.

Keller, Saskia; Hetzel, Udo; Sironen, T; Korzyukov, Y; Vapalahti, O; Kipar, Anja; Hepojoki, Jussi (2017). Co-Infecting reptarenaviruses can be vertically transmitted in Boa Constrictor. PLoS Pathogens, 13(1):e1006179.

Selimovic-Hamza, Senija; Boujon, Céline L; Hilbe, Monika; Oevermann, Anna; Seuberlich, Torsten (2017). Frequency and pathological phenotype of bovine astrovirus CH13/NeuroS1 infection in neurologically-diseased cattle: towards assessment of causality. Viruses, 9(1):E12.

von Braun, Amrei; Sekaggya-Wiltshire, Christine; Scherrer, Alexandra U; Magambo, Brian; Kambugu, Andrew; Fehr, Jan; Castelnuovo, Barbara (2017). Early virological failure and HIV drug resistance in Ugandan adults co-infected with tuberculosis. AIDS Research and Therapy, 14(1):1.

Carmo, Luís P; Schüpbach-Regula, Gertraud; Müntener, Cedric; Chevance, Anne; Moulin, Gérard; Magouras, Ioannis (2017). Approaches for quantifying antimicrobial consumption per animal species based on national sales data: a Swiss example, 2006 to 2013. Eurosurveillance, 22(6):30458.

Mossoun, A; Calvignac-Spencer, S; Anoh, A E; Pauly, M S; Driscoll, D A; Michel, A O; Grah Nazaire, L; Pfister, S; Sabwe, P; Thiesen, U; Vogler, Barbara Renate; Wiersma, L; Muyembe-Tamfum, J J; Karhemere, S; Akoua-Koffi, C; Couacy-Hymann, E; Fruth, B; Wittig, R; Leendertz, F; Schubert, G (2017). Bushmeat hunting and zoonotic transmission of Simian T-lymphotropic virus 1 in tropical West and Central Africa. Journal of Virology, 91(10):e02479-16.

Franzoso, Francesca D; Seyffert, Michael; Vogel, Rebecca; Yakimovich, Artur; de Andrade Pereira, Bruna; Meier, Anita F; Sutter, Sereina O; Tobler, Kurt; Vogt, Bernd; Greber, Urs F; Büning, Hildegard; Ackermann, Mathias; Fraefel, Cornel (2017). Cell cycle-dependent expression of AAV2 Rep in HSV-1 co-infections gives rise to a mosaic of cells replicating either AAV2 or HSV-1. Journal of Virology:JVI.00357-17.

von Braun, Amrei. Early virological failure and HIV drug resistance in Ugandan adults co-infected with tuberculosis. 2017, University of Zurich, Faculty of Medicine.

Lempereur, Laetitia; Beck, Relja; Fonseca, Isabel; Marques, Cátia; Duarte, Ana; Santos, Marcos; Zúquete, Sara; Gomes, Jacinto; Walder, Gernot; Domingos, Ana; Antunes, Sandra; Baneth, Gad; Silaghi, Cornelia; Holman, Patricia; Zintl, Annetta (2017). Guidelines for the detection of babesia and theileria parasites. Vector Borne and Zoonotic Diseases, 17(1):51-65.

Portillo, Aránzazu; de Sousa, Rita; Santibáñez, Sonia; Duarte, Ana; Edouard, Sophie; Fonseca, Isabel P; Marques, Cátia; Novakova, Marketa; Palomar, Ana M; Santos, Marcos; Silaghi, Cornelia; Tomassone, Laura; Zúquete, Sara; Oteo, José A (2017). Guidelines for the detection of rickettsia spp. Vector Borne and Zoonotic Diseases, 17(1):23-32.

Silaghi, Cornelia; Santos, Ana Sofia; Gomes, Jacinto; Christova, Iva; Matei, Ioana Adriana; Walder, Gernot; Domingos, Ana; Bell-Sakyi, Lesley; Sprong, Hein; von Loewenich, Friederike D; Oteo, José A; de la Fuente, José; Dumler, J Stephen (2017). Guidelines for the direct detection of anaplasma spp. in diagnosis and epidemiological studies. Vector Borne and Zoonotic Diseases, 17(1):12-22.

Work, Thierry M; Dagenais, Julie; Weatherby, Tina M; Balazs, George H; Ackermann, Mathias (2017). In-vitro replication of Chelonid herpesvirus 5 in organotypic skin cultures from Hawaiian green turtles (Chelonia mydas). Journal of Virology, 91(17):e00404-17.

Morganti, Giulia; Gavaudan, Stefano; Canonico, Cristina; Ravagnan, Silvia; Olivieri, Emanuela; Diaferia, Manuela; Marenzoni, Maria Luisa; Antognoni, Maria Teresa; Capelli, Gioia; Silaghi, Cornelia; Veronesi, Fabrizia (2017). Molecular survey on Rickettsia spp., Anaplasma phagocytophilum, Borrelia burgdorferi sensu lato, and Babesia spp. in Ixodes ricinus Ttcks infesting dogs in central Italy. Vector Borne and Zoonotic Diseases, 17(11):743-748.

Dervas, Eva; Hepojoki, Jussi; Laimbacher, Andrea; Romero-Palomo, Fernando; Jelinek, Christine; Keller, Saskia; Smura, Teemu; Hepojoki, Satu; Kipar, Anja; Hetzel, Udo (2017). Nidovirus-Associated proliferative pneumonia in the green tree python (Morelia viridis). Journal of Virology, 91(21):e00718-17.

Rochat, M A; Schlaepfer, E; Speck, R F (2017). Promising role of toll-like receptor 8 agonist in concert with prostratin for activation of silent HIV. Journal of Virology, 91(4):e02084-16.

Schweneker, Marc; Laimbacher, Andrea S; Zimmer, Gert; Wagner, Susanne; Schraner, Elisabeth M; Wolferstätter, Michael; Klingenberg, Marieken; Dirmeier, Ulrike; Steigerwald, Robin; Lauterbach, Henning; Hochrein, Hubertus; Chaplin, Paul; Suter, Mark; Hausmann, Jürgen (2017). Recombinant modified vaccinia virus Ankara generating Ebola virus-like particles. Journal of Virology, 91(11):e00343-17.

2016

Mertz, Dominik; Fadel, Shaza A; Lam, Po-Po; Tran, Dat; Srigley, Jocelyn A; Asner, Sandra A; Science, Michelle; Kuster, Stefan P; Nemeth, Johannes; Johnstone, Jennie; Ortiz, Justin R; Loeb, Mark (2016). Herd effect from influenza vaccination in non-healthcare settings: a systematic review of randomised controlled trials and observational studies. Eurosurveillance, 21(42):2.

Walker, Andreas; Skibbe, Kathrin; Steinmann, Eike; Pfaender, Stephanie; Kuntzen, Thomas; Megger, Dominik A; Groten, Svenja; Sitek, Barbara; Lauer, Georg M; Kim, Arthur Y; Pietschmann, Thomas; Allen, Todd M; Timm, Joerg (2016). Distinct escape pathway by hepatitis C virus genotype 1a from a dominant CD8+T cell response by selection of altered epitope processing. Journal of Virology, 90(1):33-42.

Spiri, Andrea M; Thézé, Julien; Meli, Marina L; Cattori, Valentino; Berger, Alice; Steinrigl, Adolf; Pybus, Oliver G; Hofmann-Lehmann, Regina; Willi, Barbara (2016). Genetic diversity and phenotypic associations of feline caliciviruses from cats in Switzerland. Journal of General Virology, 97(12):3253-3266.

Altmeier, Simon; Toska, Albulena; Sparber, Florian; Teijeira, Alvaro; Halin, Cornelia; LeibundGut-Landmann, Salomé (2016). IL-1 Coordinates the neutrophil response to C.Albicans in the oral mucosa. PLoS Pathogens, 12:9.

Oberle, Corinna S; Joos, Beda; Rusert, Peter; Campbell, Nottania K; Beauparlant, David; Kuster, Herbert; Weber, Jacqueline; Schenkel, Corinne D; Scherrer, Alexandra U; Magnus, Carsten; Kouyos, Roger; Rieder, Philip; Niederöst, Barbara; Braun, Dominique L; Pavlovic, Jovan; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Trkola, Alexandra; Metzner, Karin J; Günthard, Huldrych F (2016). Tracing HIV-1 transmission: envelope traits of HIV-1 transmitter and recipient pairs. Retrovirology, 13(1):62.

Pohl, M O; Lanz, C; Stertz, S (2016). Late stages of the influenza A virus replication cycle — a tight interplay between virus and host. Journal of General Virology, 97(9):2058 -2072.

Giudici, F; Bertisch, B; Negro, F; Stirnimann, G; Müllhaupt, B; Moradpour, D; Cerny, A; Keiser, O; Swiss Hepatitis C Cohort Study (2016). Access to therapy and therapy outcomes in the Swiss Hepatitis C Cohort Study: a person-centred approach. Journal of Viral Hepatitis, 23(9):697-707.

Dolowschiak, Tamas; Mueller, Anna Angelika; Pisan, Lynn Joanna; Feigelman, Rounak; Felmy, Boas; Sellin, Mikael Erik; Namineni, Sukumar; Nguyen, Bidong Dinh; Wotzka, Sandra Yvonne; Heikenwalder, Mathias; von Mering, Christian; Mueller, Christoph; Hardt, Wolf-Dietrich (2016). IFN-γ Hinders Recovery from Mucosal Inflammation during Antibiotic Therapy for Salmonella Gut Infection. Cell Host & Microbe, 20(2):238-249.

Krtková, Jana; Thomas, Elizabeth B; Alas, Germain C M; Schraner, Elisabeth M; Behjatnia, Habib R; Hehl, Adrian B; Paredez, Alexander R (2016). Rac regulates giardia lamblia encystation by coordinating cyst wall protein trafficking and secretion. mBio, 7(4):e01003-e01016.

Green, Victoria A; Pelkmans, Lucas (2016). A Systems Survey of Progressive Host-Cell Reorganization during Rotavirus Infection. Cell Host & Microbe, 20(1):107-120.

Gautret, Philippe; Mockenhaupt, Frank; Grobusch, Martin P; Rothe, Camilla; von Sonnenburg, Frank; van Genderen, Perry J; Chappuis, Francois; Asgeirsson, Hilmir; Caumes, Eric; Bottieau, Emmanuel; Malvy, Denis; Lopez-Vélez, Rogelio; Jensenius, Mogens; Larsen, Carsten Schade; Castelli, Francesco; Rapp, Christophe; Field, Vanessa; Molina, Israel; Gkrania-Klotsas, Effrossyni; Florescu, Simin; Lalloo, David; Schlagenhauf, Patricia (2016). Arboviral and other illnesses in travellers returning from Brazil, June 2013 to May 2016: implications for the 2016 Olympic and Paralympic Games. Eurosurveillance, 21(27):14-18.

Zumthor, Jon Paulin; Cernikova, Lenka; Rout, Samuel; Kaech, Andres; Faso, Carmen; Hehl, Adrian B (2016). Static clathrin assemblies at the peripheral vacuole-plasma membrane interface of the parasitic protozoan giardia lamblia. PLoS Pathogens, 12(7):e1005756.

Seimetz, Elisabeth; Boyayo, Anne-Marie; Mosler, Hans-Joachim (2016). The Influence of Contextual and Psychosocial Factors on Handwashing. American Journal of Tropical Medicine and Hygiene, 94(6):1407-1417.

Bender, Ruben R; Muth, Anke; Schneider, Irene C; Friedel, Thorsten; Hartmann, Jessica; Plückthun, Andreas; Maisner, Andrea; Buchholz, Christian J (2016). Receptor-targeted nipah virus glycoproteins improve cell-type selective gene delivery and reveal a preference for membrane-proximal cell attachment. PLoS Pathogens, 12(6):e1005641.

Personnic, Nicolas; Bärlocher, Kevin; Finsel, Ivo; Hilbi, Hubert (2016). Subversion of retrograde trafficking by translocated pathogen effectors. Trends in Microbiology, 24(6):450-462.

Schmidt, Katharina; Keiser, Simon; Günther, Viola; Georgiev, Oleg; Hirsch, Hans H; Schaffner, Walter; Bethge, Tobias (2016). Transcription enhancers as major determinants of SV40 polyomavirus growth efficiency and host cell tropism. Journal of General Virology, 97(7):1597-1603.

Mockenhaupt, Frank P; Barbre, Kira A; Jensenius, Mogens; Larsen, Carsten S; Barnett, Elizabeth D; Stauffer, William; Rothe, Camilla; Asgeirsson, Hilmir; Hamer, Davidson H; Esposito, Douglas H; Gautret, Philippe; Schlagenhauf, Patricia (2016). Profile of illness in Syrian refugees: A GeoSentinel analysis, 2013 to 2015. Eurosurveillance, 21(10):1-5.

Greber, Urs F (2016). Virus and host mechanics support membrane penetration and cell entry. Journal of Virology, 90(8):3802-3805.

Naujoks, Jan; Tabeling, Christoph; Dill, Brian D; Hoffmann, Christine; Brown, Andrew S; Kunze, Mareike; Kempa, Stefan; Peter, Andrea; Mollenkopf, Hans-Joachim; Dorhoi, Anca; Kershaw, Olivia; Gruber, Achim D; Sander, Leif E; Witzenrath, Martin; Herold, Susanne; Nerlich, Andreas; Hocke, Andreas C; van Driel, Ian; Suttorp, Norbert; Bedoui, Sammy; Hilbi, Hubert; Trost, Matthias; Opitz, Bastian (2016). IFNs modify the proteome of legionella-containing vacuoles and restrict infection via IRG1-derived itaconic acid. PLoS Pathogens, 12(2):e1005408.

Stalder, Hanspeter; Hug, Corinne; Zanoni, Reto; Vogt, Hans-Rudolf; Peterhans, Ernst; Schweizer, Matthias; Bachofen, Claudia (2016). A nationwide database linking information on the hosts with sequence data of their virus strains: A useful tool for the eradication of bovine viral diarrhea (BVD) in Switzerland. Virus Research, 218:49-56.

Rout, Samuel; Zumthor, Jon Paulin; Schraner, Elisabeth M; Faso, Carmen; Hehl, Adrian B (2016). An interactome-centered protein discovery approach reveals novel components involved in mitosome function and homeostasis in giardia lamblia. PLoS Pathogens, 12(12):e1006036.

Paul, P; Münz, C (2016). Autophagy and mammalian viruses: roles in immune response, viral replication, and beyond. In: Kielian, Margaret; Maramorosch, Karl; Mettenleiter, Thomas. Advances in Virus Research. Burlington: Elsevier, 149-195.

Judd, Ali; Collins, Intira; Lodi, Sara; Olson, Ashley; Pantazis, Nikos; del Amo, Julia; Duff, Charlotte; Gennotte, Anne-Francoise; Kristensen, Dennis; Ledergerber, Bruno; Nadal, David; Rojo Conejo, Pablo; Sabin, Caroline A; Saidi, Yacine; Salbol Brandt, Rikke; Termote, Monique; Thorne, Claire; Warszawski, Josiane; Gibb, Diana (2016). Children and young people with perinatal HIV in Europe: epidemiological situation in 2014 and implications for the future. Eurosurveillance, 21(10):20-26.

Van der Auwera, Gert; Bart, Aldert; Chicharro, Carmen; Cortes, Sofia; Davidsson, Leigh; Di Muccio, Trentina; Dujardin, Jean-Claude; Felger, Ingrid; Paglia, Maria Grazia; Grimm, Felix; Harms, Gundel; Jaffe, Charles L; Manser, Monika; Ravel, Christophe; Robert-Gangneux, Florence; Roelfsema, Jeroen; Töz, Seray; Verweij, Jaco J; Chiodini, Peter L (2016). Comparison of Leishmania typing results obtained from 16 European clinical laboratories in 2014. Eurosurveillance, 21(49):1-11.

Reimann, Regina R; Sonati, Tiziana; Hornemann, Simone; Herrmann, Uli S; Arand, Michael; Hawke, Simon; Aguzzi, Adriano (2016). Differential toxicity of antibodies to the prion protein. PLoS Pathogens, 12(1):e1005401.

Moormann, Ann; Münz, Christian (2016). Editorial overview: Viruses and cancer. Current Opinion in Virology, 20:iv-v.

Münz, Christian (2016). Epstein Barr virus: a tumor virus that needs cytotoxic lymphocytes to persist asymptomatically. Current Opinion in Virology, 20:34-39.

Magnus, C; Reh, L; Trkola, Alexandra (2016). HIV-1 resistance to neutralizing antibodies: Determination of antibody concentrations leading to escape mutant evolution. Virus Research, 218:57-70.

Kakalacheva, Kristina; Regenass, Stephan; Wiesmayr, Silke; Azzi, Tarik; Berger, Christoph; Dale, Russell; Brilot, Fabienne; Münz, Christian; Rostasy, Kevin; Nadal, David; Lünemann, Jan (2016). Infectious Mononucleosis Triggers Generation of IgG Auto-Antibodies against Native Myelin Oligodendrocyte Glycoprotein. Viruses, 8(2):51.

Javed, A; Leuchte, N; Salinas, G; Opitz, L; Stahl-Hennig, C; Sopper, S; Sauermann, U (2016). Pre-infection transcript levels of FAM26F in peripheral blood mononuclear cells inform about overall plasma viral load in acute and post-acute phase after simian immunodeficiency virus infection. Journal of General Virology, 97(12):3400-3412.

2015

Tripathi, S; Pohl, M O; Zhou, Y; Rodriguez-Frandsen, A; Wang, G; Stein, D A; Moulton, H M; Che, J; Mulder, L C F; Yangüez, E; Andenmatten, D; Pache, L; Manicassamy, B; Albrecht, R A; Gonzalez, M G; Nguyen, Quy; Brass, A; Elledge, S; White, M; Shapira, S; Hacohen, N; Karlas, A; Meyer, T F; Shales, M; Gatorano, A; Johnson, J R; Jang, G; Johnson, T; Verschueren, E; Sanders, D; Krogan, N; Shaw, M; König, R; Stertz, S; García-Sastre, A; Chanda, S K; DeJesus, P (2015). Meta- and orthogonal integration of influenza "OMICs" data defines a role for UBR4 in virus budding. Cell Host & Microbe, 18(6):723-735.

Simon, Sylvia; Schell, Ursula; Heuer, Natalie; Hager, Dominik; Albers, Michael F; Matthias, Jan; Fahrnbauer, Felix; Trauner, Dirk; Eichinger, Ludwig; Hedberg, Christian; Hilbi, Hubert (2015). Inter-kingdom signaling by the Legionella Quorum Sensing Molecule LAI-1 modulates cell migration through an IQGAP1-Cdc42-ARHGEF9-dependent pathway. PLoS Pathogens, 11(12):e1005307.

Brandenberg, Oliver F; Magnus, Carsten; Regoes, Roland R; Trkola, Alexandra (2015). The HIV-1 entry process: A stoichiometric view. Trends in Microbiology, 23(12):763-774.

Gregorovic, Goran; Boulden, Elizabeth A; Bosshard, Rachel; Elgueta Karstegl, Claudio; Skalsky, Rebecca; Cullen, Bryan R; Gujer, Cornelia; Rämer, Patrick; Münz, Christian; Farrell, Paul J (2015). Epstein-barr viruses (EBVs) deficient in EBV-encoded RNAs have higher levels of latent membrane protein 2 RNA expression in lymphoblastoid cell lines and efficiently establish persistent infections in humanized mice. Journal of Virology, 89(22):11711-11714.

Kreibich, Saskia; Emmenlauer, Mario; Fredlund, Jennifer; Rämö, Pauli; Münz, Christian; Dehio, Christoph; Enninga, Jost; Hardt, Wolf-Dietrich (2015). Autophagy Proteins Promote Repair of Endosomal Membranes Damaged by the Salmonella Type Three Secretion System 1. Cell Host & Microbe, 18(5):527-537.

Wensing, Annemarie M; Calvez, Vincent; Günthard, Huldrych F; Johnson, Victoria A; Paredes, Roger; Pillay, Deenan; Shafer, Robert W; Richman, Douglas D (2015). 2015 update of the drug resistance mutations in HIV-1. Topics in Antiviral Medicine, 23(4):132-141.

Jung, Jae; Münz, Christian (2015). Immune control of oncogenic γ-herpesviruses. Current Opinion in Virology, 14:79-86.

Turkington, H L; Juozapaitis, M; Kerry, P S; Aydillo, T; Ayllon, J; García-Sastre, A; Schwemmle, M; Hale, B G (2015). Novel bat influenza virus NS1 proteins bind double-stranded RNA and antagonize host innate immunity. Journal of Virology, 89(20):10696-10701.

Birger, Ruthie B; Kouyos, Roger D; Cohen, Ted; Griffiths, Emily C; Huijben, Silvie; Mina, Michael; Volkova, Victoriya; Grenfell, Bryan; Metcalf, C Jessica E (2015). The potential impact of coinfection on antimicrobial chemotherapy and drug resistance. Trends in Microbiology, 23(9):537-44.

Keller, Etienne Xavier; Delbue, Serena; Tognon, Mauro; Provenzano, Maurizio (2015). Polyomavirus BK and prostate cancer: a complex interaction of potential clinical relevance. Reviews in Medical Virology, 25(6):366-378.

Reh, Lucia; Magnus, Carsten; Schanz, Merle; Weber, Jacqueline; Uhr, Therese; Rusert, Peter; Trkola, Alexandra (2015). Capacity of broadly neutralizing antibodies to inhibit HIV-1 cell-cell transmission is strain- and epitope-dependent. PLoS Pathogens, 11(7):e1004966.

Luisoni, Stefania; Suomalainen, Maarit; Boucke, Karin; Tanner, Lukas B; Wenk, Markus R; Guan, Xue Li; Grzybek, Michał; Coskun, Ünal; Greber, Urs F (2015). Co-option of membrane wounding enables virus penetration into cells. Cell Host & Microbe, 18(1):75-85.

Myburgh, Renier; Ivic, Sandra; Pepper, Michael S; Gers-Huber, Gustavo; Li, Duo; Audigé, Annette; Rochat, Mary-Aude; Jaquet, Vincent; Regenass, Stephan; Manz, Markus G; Salmon, Patrick; Krause, Karl-Heinz; Speck, Roberto F (2015). Lentivector knockdown of CCR5 in hematopoietic stem and progenitor cells confers functional and persistent HIV-1 resistance in humanized mice. Journal of Virology, 89(13):6761-6772.

Edinger, T O; Pohl, M O; Yangüez, E; Stertz, S (2015). Cathepsin W is required for escape of influenza a virus from late endosomes. mBio, 6(3):e00297-15.

Lewis, C S; Porter, E; Matthews, D; Kipar, A; Tasker, S; Helps, C R; Siddell, S G (2015). Genotyping coronaviruses associated with feline infectious peritonitis. Journal of General Virology, 96(Pt 6):1358-1368.

Fehr, Alexander; Eshwar, Athmanya K; Neuhauss, Stephan C F; Ruetten, Maja; Lehner, Angelika; Vaughan, Lloyd (2015). Evaluation of zebrafish as a model to study the pathogenesis of the opportunistic pathogen Cronobacter turicensis. Emerging Microbes and Infections, 4(5):e29.

Nagel, Maria A; Lenggenhager, Daniela; White, Teresa; Khmeleva, Nelly; Heintzman, Anna; Boyer, Philip J; Gilden, Don (2015). Disseminated VZV infection and asymptomatic VZV vasculopathy after steroid abuse. Journal of Clinical Virology, 66:72-75.

Alves, Lisa; Khosravi, Mojtaba; Avila, Mislay; Ader-Ebert, Nadine; Bringolf, Fanny; Zurbriggen, Andreas; Vandevelde, Marc; Plattet, Philippe (2015). SLAM- and nectin-4-independent noncytolytic spread of canine distemper virus in astrocytes. Journal of Virology, 89(10):5724-5733.

Ader-Ebert, Nadine; Khosravi, Mojtaba; Herren, Michael; Avila, Mislay; Alves, Lisa; Bringolf, Fanny; Örvell, Claes; Langedijk, Johannes P; Zurbriggen, Andreas; Plemper, Richard K; Plattet, Philippe (2015). Sequential conformational changes in the morbillivirus attachment protein initiate the membrane fusion process. PLoS Pathogens, 11(5):e1004880.

Finsel, Ivo; Hilbi, Hubert (2015). Formation of a pathogen vacuole according to Legionella pneumophila: how to kill one bird with many stones. Cellular Microbiology, 17(7):935-950.

Jelcic, Ivan; Jelcic, Ilijas; Faigle, Wolfgang; Sospedra, Mireia; Martin, Roland (2015). Immunology of progressive multifocal leukoencephalopathy. Journal of Neurovirology, 21(6):614-622.

Keiser, Simon; Schmidt, Katharina; Bethge, Tobias; Steiger, Julia; Hirsch, Hans H; Schaffner, Walter; Georgiev, Oleg (2015). Emergence of infectious simian virus 40 whose AT tract in the replication origin/early promoter region is substituted by cellular or viral DNAs. Journal of General Virology, 96:601-606.

Metcalf, C J E; Birger, R B; Funk, S; Kouyos, R D; Lloyd-Smith, J O; Jansen, V A A (2015). Five challenges in evolution and infectious diseases. Epidemics, 10:40-44.

Wyrzucki, Arkadiusz; Bianchi, Matteo; Kohler, Ines; Steck, Marco; Hangartner, Lars (2015). Heterosubtypic antibodies to influenza A virus have limited activity against cell-bound virus but are not impaired by strain-specific serum antibodies. Journal of Virology, 89(6):3136-3144.

Yang, Wan-Lin; Kouyos, Roger D; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Scherrer, Alexandra U; Shilaih, Mohaned; Hinkley, Trevor; Petropoulos, Christos; Bonhoeffer, Sebastian; Günthard, Huldrych F (2015). Persistence of transmitted HIV-1 drug resistance mutations associated with fitness costs and viral genetic backgrounds. PLoS Pathogens, 11(3):e1004722.

Bethge, Tobias; Hachemi, Helen A; Manzetti, Julia; Gosert, Rainer; Schaffner, Walter; Hirsch, Hans H (2015). Sp1 sites in the noncoding control region of BK polyomavirus are key regulators of bidirectional viral early and late gene expression. Journal of Virology, 89(6):3396-3411.

Avila, Mislay; Khosravi, Mojtaba; Alves, Lisa; Ader-Ebert, Nadine; Bringolf, Fanny; Zurbriggen, Andreas; Plemper, Richard K; Plattet, Philippe (2015). Canine distemper virus envelope protein interactions modulated by hydrophobic residues in the fusion protein globular head. Journal of Virology, 89(2):1445-1451.

Hepojoki, J; Kipar, A; Korzyukov, Y; Bell-Sakyi, L; Vapalahti, O; Hetzel, U (2015). Replication of Boid Inclusion Body Disease-Associated Arenaviruses Is Temperature Sensitive in both Boid and Mammalian Cells. Journal of Virology, 89(2):1119-1128.

Brandenberg, Oliver F; Magnus, Carsten; Rusert, Peter; Regoes, Roland R; Trkola, Alexandra (2015). Different infectivity of HIV-1 strains is linked to number of envelope trimers required for entry. PLoS Pathogens, 11(1):e1004595.

Wild, Peter; Leisinger, Sabine; de Oliveira, Anna Paula; Schraner, Elisabeth M; Kaech, Andres; Ackermann, Mathias; Tobler, Kurt (2015). Herpes simplex virus 1 Us3 deletion mutant is infective despite impaired capsid translocation to the cytoplasm. Viruses, 7(1):52-71.

Seyffert, Michael; Glauser, Daniel L; Tobler, Kurt; Georgiev, Oleg; Vogel, Rebecca; Vogt, Bernd; Agundez, Leticia; Linden, Michael; Büning, Hildegard; Ackermann, Mathias; Fraefel, Cornel (2015). Adeno-associated virus type 2 Rep68 can bind to consensus rep-binding sites on the herpes simplex virus 1 genome. Journal of Virology, 89(21):11150-11158.

Trautwein-Weidner, Kerstin; Gladiator, André; Kirchner, Florian R; Becattini, Simone; Rülicke, Thomas; Sallusto, Federica; LeibundGut-Landmann, Salomé (2015). Antigen-specific Th17 cells are primed by distinct and complementary dendritic cell subsets in oropharyngeal candidiasis. PLoS Pathogens, 11(10):e1005164.

Lilje, Jonathan; Mosler, Hans-Joachim; Kessely, Hamit (2015). Factors Determining Water Treatment Behavior for the Prevention of Cholera in Chad. American Journal of Tropical Medicine and Hygiene, 93(1):57-65.

Carballo, David; Delhumeau, Cécile; Carballo, Sebastian; Bähler, Caroline; Radovanovic, Dragona; Hirschel, Bernard; Clerc, Olivier; Bernasconi, Enos; Fasel, Dominique; Schmid, Patrick; Cusini, Alexia; Fehr, Jan; Erne, Paul; Keller, Pierre-Fréderic; Ledergerber, Bruno; Calmy, Alexandra (2015). Increased mortality after a first myocardial infarction in human immunodeficiency virus-infected patients; a nested cohort study. AIDS Research and Therapy, 12(4):online.

Mossong, Joël; DeCruyenaere, Frédéric; Moris, Gilbert; Ragimbeau, Catherine; Olinger, Christophe; Johler, Sophia; Perrin, Monique; Hau, Patrick; Weicherding, Pierre (2015). Investigation of a staphylococcal food poisoning outbreak combining case–control, traditional typing and whole genome sequencing methods, Luxembourg, June 2014. Eurosurveillance, 20(45):pii=30059.

Campos, Noëlie; Myburgh, Renier; Garcel, Aude; Vautrin, Audrey; Lapasset, Laure; Nadal, Erika Schläpfer; Mahuteau-Betzer, Florence; Najman, Romain; Fornarelli, Pauline; Tantale, Katjana; Basyuk, Eugénia; Séveno, Martial; Venables, Julian P; Pau, Bernard; Bertrand, Edouard; Wainberg, Mark A; Speck, Roberto F; Scherrer, Didier; Tazi, Jamal (2015). Long lasting control of viral rebound with a new drug ABX464 targeting Rev - mediated viral RNA biogenesis. Retrovirology, 12(30):online.

Helfer-Hungerbuehler, A Katrin; Widmer, Stefan; Kessler, Yvonne; Riond, Barbara; Boretti, Felicitas S; Grest, Paula; Lutz, Hans; Hofmann-Lehmann, Regina (2015). Long-term follow up of feline leukemia virus infection and characterization of viral RNA loads using molecular methods in tissues of cats with different infection outcomes. Virus Research, 197:137-150.

Birger, Ruthie; Kouyos, Roger; Dushoff, Jonathan; Grenfell, Bryan (2015). Modeling the effect of HIV coinfection on clearance and sustained virologic response during treatment for hepatitis C virus. Epidemics, 12:1-10.

Herrmann, Uli S; Sonati, Tiziana; Falsig, Jeppe; Reimann, Regina R; Dametto, Paolo; O'Connor, Tracy; Li, Bei; Lau, Agnes; Hornemann, Simone; Sorce, Silvia; Wagner, Uli; Sanoudou, Despina; Aguzzi, Adriano (2015). Prion infections and anti-PrP antibodies trigger converging neurotoxic pathways. PLoS Pathogens, 11(2):e1004662.

Nesina, Stefanie; Helfer-Hungerbuehler, A K; Riond, Barbara; Boretti, Felicitas S; Willi, Barbara; Meli, Marina L; Grest, Paula; Hofmann-Lehmann, Regina (2015). Retroviral DNA-the silent winner: blood transfusion containing latent feline leukemia provirus causes infection and disease in naïve recipient cats. Retrovirology, 12(1):105.

Ponroy, Nicolas; Taveira, Aline; Mueller, Nicolas J; Millard, Anne-Laure (2015). Statins demonstrate a broad anti-cytomegalovirus activity in vitro in ganciclovir-susceptible and resistant strains. Journal of Medical Virology, 87(1):141-153.

Lanz, C; Yangüez, E; Andenmatten, D; Stertz, S (2015). Swine IFITM proteins potently inhibit influenza A virus replication. Journal of Virology, 89(1):863-869.

Klausmann, Stefanie; Sydler, Titus; Summerfield, Artur; Lewis, Fraser I; Weilenmann, Roseline; Sidler, Xaver; Brugnera, Enrico (2015). T-cell reprogramming through targeted CD4-coreceptor and T-cell receptor expression on maturing thymocytes by latent Circoviridae family member porcine circovirus type 2 cell infections in the thymus. Emerging Microbes and Infections, 4(3):e15.

2014

Egli, Adrian; Santer, Deanna M; O'Shea, Daire; Barakat, Khaled; Syedbasha, Mohammedyaseen; Vollmer, Madeleine; Baluch, Aliyah; Bhat, Rakesh; Groenendyk, Jody; Joyce, Michael A; Lisboa, Luiz F; Thomas, Brad S; Battegay, Manuel; Khanna, Nina; Mueller, Thomas; Tyrrell, D Lorne J; Houghton, Michael; Humar, Atul; Kumar, Deepali (2014). IL-28B is a Key Regulator of B- and T-Cell Vaccine Responses against Influenza. PLoS Pathogens, 10(12):e1004556.

Roulin, Pascal S; Lötzerich, Mark; Torta, Federico; Tanner, Lukas B; van Kuppeveld, Frank J M; Wenk, Markus R; Greber, Urs F (2014). Rhinovirus uses a phosphatidylinositol 4-phosphate/cholesterol counter-current for the formation of replication compartments at the ER-Golgi interface. Cell Host & Microbe, 16(5):677-690.

Münz, Christian (2014). Regulation of innate immunity by the molecular machinery of macroautophagy. Cellular Microbiology, 16(11):1627-1636.

Sundqvist, Emilie; Buck, Dorothea; Warnke, Clemens; Albrecht, Eva; Gieger, Christian; Khademi, Mohsen; Lima Bomfim, Izaura; Fogdell-Hahn, Anna; Link, Jenny; Alfredsson, Lars; Søndergaard, Helle Bach; Hillert, Jan; Oturai, Annette B; Hemme, Bernhard; Kockum, Ingrid; Olsson, Tomas; Martin, Roland (2014). JC polyomavirus infection is strongly controlled by human leucocyte antigen class II variants. PLoS Pathogens, 10(4):e1004084.

Prasad, Vibhu; Suomalainen, Maarit; Pennauer, Mirjam; Yakimovich, Artur; Andriasyan, Vardan; Hemmi, Silvio; Greber, Urs F (2014). Chemical induction of unfolded protein response enhances cancer cell killing through lytic virus infection. Journal of Virology, 88(22):13086-13098.

Schlaepfer, Erika; Rochat, Mary-Aude; Duo, Li; Speck, Roberto F (2014). Triggering TLR2, -3, -4, -5, and -8 reinforces the restrictive nature of M1- and M2-polarized macrophages to HIV. Journal of Virology, 88(17):9769-9781.

de Bruin, E; Loeber, J G; Meijer, A; Castillo, G Martinez; Cepeda, M L Granados; Torres-Sepúlveda, M Rosario; Borrajo, G J C; Caggana, M; Giguere, Y; Meyer, M; Fukushi, M; Devi, A R Rama; Khneisser, I; Vilarinho, L; von Döbeln, U; Torresani, T; Mackenzie, J; Zutt, I; Schipper, M; Elvers, L H; Koopmans, M P G (2014). Evolution of an influenza pandemic in 13 countries from 5 continents monitored by protein microarray from neonatal screening bloodspots. Journal of Clinical Virology, 61(1):74-80.

Diefenbach, Russel J; Fraefel, Cornel; Cunningham, Anthony L (2014). The interaction of HSV-1 tegument proteins pUL36 and pUL37: a novel target for antivirals that inhibit viral assembly. Future Virology:787-789.

Antsiferova, Olga; Müller, Anne; Rämer, Patrick C; Chijioke, Obinna; Chatterjee, Bithi; Raykova, Ana; Planas, Raquel; Sospedra, Mireia; Shumilov, Anatoliy; Tsai, Ming-Han; Delecluse, Henri-Jacques; Münz, Christian (2014). Adoptive transfer of EBV specific CD8+ T cell clones can transiently control EBV infection in humanized mice. PLoS Pathogens, 10(8):e1004333.

Whitney, Paul G; Bär, Eva; Osorio, Fabiola; Rogers, Neil C; Schraml, Barbara U; Deddouche, Safia; LeibundGut-Landmann, Salomé; Reis e Sousa, Caetano (2014). Syk signaling in dendritic cells orchestrates innate resistance to systemic fungal infection. PLoS Pathogens, 10(7):e1004276.

Haas, Florian; Yamauchi, Kazuma; Murat, Monika; Bernasconi, Michele; Yamanaka, Noboru; Speck, Roberto F; Nadal, David (2014). Activation of NF-κB via Endosomal Toll-like Receptor 7 (TLR7)or TLR9 Suppresses Murine Herpes Virus 68 Reactivation. Journal of Virology, 88(17):10002-10012.

Wensing, Annemarie M; Calvez, Vincent; Günthard, Huldrych F; Johnson, Victoria A; Paredes, Roger; Pillay, Deenan; Shafer, Robert W; Richman, Douglas D (2014). 2014 Update of the drug resistance mutations in HIV-1. Topics in Antiviral Medicine, 22(3):642-650.

Meyer Sauteur, Patrick M; Jacobs, Bart C; Spuesens, Emiel B M; Jacobs, Enno; Nadal, David; Vink, Cornelis; van Rossum, Annemarie M C (2014). Antibody responses to Mycoplasma pneumoniae: role in pathogenesis and diagnosis of encephalitis? PLoS Pathogens, 10(6):e1003983.

Abel zur Wiesch, Pia; Kouyos, Roger; Abel, Sören; Viechtbauer, Wolfgang; Bonhoeffer, Sebastian (2014). Cycling empirical antibiotic therapy in hospitals: Meta-analysis and models. PLoS Pathogens, 10(6):e1004225.

Bruggmann, P; Berg, T; et al; Müllhaupt, B (2014). Historical epidemiology of hepatitis C virus (HCV) in selected countries. Journal of Viral Hepatitis, 21 Suppl:5-33.

Wedemeyer, H; et al; Müllhaupt, B (2014). Strategies to manage hepatitis C virus (HCV) disease burden. Journal of Viral Hepatitis, 21 Suppl:60-89.

Razavi, H; et al; Müllhaupt, B (2014). The present and future disease burden of hepatitis C virus (HCV) infection with today's treatment paradigm. Journal of Viral Hepatitis, 21 Suppl:34-59.

Wyrzucki, A; Dreyfus, C; Kohler, I; Steck, M; Wilson, I A; Hangartner, L (2014). Alternative Recognition of the Conserved Stem Epitope in Influenza A Virus Hemagglutinin by a VH3-30-Encoded Heterosubtypic Antibody. Journal of Virology, 88(12):7083-7092.

Schneider, Christoph; Nobs, Samuel P; Heer, Alex K; Kurrer, Michael; Klinke, Glynis; van Rooijen, Nico; Vogel, Johannes; Kopf, Manfred (2014). Alveolar macrophages are essential for protection from respiratory failure and associated morbidity following influenza virus infection. PLoS Pathogens, 10(4):e1004053.

Münz, Christian (2014). Influenza A virus lures autophagic protein LC3 to budding sites. Cell Host & Microbe, 15(2):130-131.

Hepojoki, J; Strandin, T; Hetzel, U; Sironen, T; Klingstrom, J; Sane, J; Makela, S; Mustonen, J; Meri, S; Lundkvist, A; Vapalahti, O; Lankinen, H; Vaheri, A (2014). Acute hantavirus infection induces galectin-3-binding protein. Journal of General Virology, 95(Pt_11):2356-2364.

Simen, Birgitte B; Braverman, Michael S; Abbate, Isabella; Aerssens, Jeroen; Bidet, Yannick; Bouchez, Olivier; Gabriel, Christian; Izopet, Jacques; Kessler, Harald H; Stelzl, Evelyn; Di Giallonardo, Francesca; Schlapbach, Ralph; Radonic, Aleksander; Paredes, Roger; Recordon-Pinson, Patricia; Sakwa, James; St John, Elizabeth P; Schmitz-Agheguian, Gudrun G; Metzner, Karin J; Däumer, Martin P (2014). An international multicenter study on HIV-1 drug resistance testing by 454 ultra-deep pyrosequencing. Journal of Virological Methods, 204:31-37.

Humphrey, S; Chaloner, G; Kemmett, K; Davidson, N; Williams, N; Kipar, A; Humphrey, T; Wigley, P (2014). Campylobacter jejuni is not merely a commensal in commercial broiler chickens and affects bird welfare. mBio, 5(4):e01364-14.

Bühler, Silja; Roddy, Paul; Nolte, Ellen; Borchert, Matthias (2014). Clinical Documentation and Data Transfer from Ebola and Marburg Virus Disease Wards in Outbreak Settings: Health Care Workers’ Experiences and Preferences. Viruses, 6(2):927-937.

Abdel-Mohsen, Mohamed; Deng, Xutao; Liegler, Teri; Guatelli, John C; Salama, Mohamed S; Ghanem, Hussam El-Din A; Rauch, Andri; Ledergerber, Bruno; Deeks, Steven G; Günthard, Huldrych F; Wong, Joseph K; Pillai, Satish K (2014). Effects of alpha interferon treatment on intrinsic anti-HIV-1 immunity in vivo. Journal of Virology, 88(1):763-767.

Shah, Nikunj; Hülsmeier, Andreas J; Hochhold, Nina; Neidhart, Michel; Gay, Steffen; Hennet, Thierry (2014). Exposure to Mimivirus collagen promotes arthritis. Journal of Virology, 88(2):838-845.

Meier, Roger; Franceschini, Andrea; Horvath, Peter; Tetard, Marilou; Mancini, Roberta; von Mering, Christian; Helenius, Ari; Lozach, Pierre-Yves (2014). Genome-Wide Small Interfering RNA Screens Reveal VAMP3 as a Novel Host Factor Required for Uukuniemi Virus Late Penetration. Journal of Virology, 88(15):8565-8578.

Simon, Sylvia; Wagner, Maria A; Rothmeier, Eva; Müller-Taubenberger, Annette; Hilbi, Hubert (2014). Icm/Dot-dependent inhibition of phagocyte migration by Legionella is antagonized by a translocated Ran GTPase activator. Cellular Microbiology, 16(7):977-992.

Duscha, Stefan; Boukari, Heithem; Shcherbakov, Dimitri; Salian, Sumantha; Silva, Sandrina; Kendall, Ann; Kato, Takayuki; Akbergenov, Rashid; Perez-Fernandez, Deborah; Bernet, Bruno; Vaddi, Swapna; Thommes, Pia; Schacht, Jochen; Crich, David; Vasella, Andrea; Böttger, Erik C (2014). Identification and evaluation of improved 4'-O-(alkyl) 4,5-disubstituted 2-deoxystreptamines as next-generation aminoglycoside antibiotics. mBio, 5(5):e01827-e01814.

Brandenberg, Oliver F; Rusert, Peter; Magnus, Carsten; Weber, Jacqueline; Böni, Jürg; Günthard, Huldrych F; Regoes, Roland R; Trkola, Alexandra (2014). Partial rescue of V1V2 mutant infectivity by HIV-1 cell-cell transmission supports the domain’s exceptional capacity for sequence variation. Retrovirology, 11:75.

Maurer, F; Castelberg, C; von Braun, A; Wolfensberger, A; Bloemberg, G; Bottger, E; Somoskovi, A (2014). Postsurgical wound infections due to rapidly growing mycobacteria in Swiss medical tourists following cosmetic surgery in Latin America between 2012 and 2014. Eurosurveillance, 19(37):pii=20905.

Pohl, M O; Edinger, T O; Stertz, S (2014). Prolidase is required for early trafficking events during influenza a virus entry. Journal of Virology, 88(19):11271-11283.

Hetzel, U; Sironen, T; Laurinmäki, P; Liljeroos, L; Patjas, A; Henttonen, H; Vaheri, A; Artelt, A; Kipar, A; Butcher, S J; Vapalahti, O; Hepojoki, J (2014). Reply to "Updated phylogenetic analysis of arenaviruses detected in boid snakes". Journal of Virology, 88(2):1401.

Cummings, Kevin J; Rodriguez-Rivera, Lorraine D; Mitchell, Katharyn J; Hoelzer, Karin; Wiedmann, Martin; McDonough, Patrick L; Altier, Craig; Warnick, Lorin D; Perkins, Gillian A (2014). Salmonella enterica serovar Oranienburg outbreak in a veterinary medical teaching hospital with evidence of nosocomial and on-farm transmission. Vector Borne and Zoonotic Diseases, 14(7):496-502.

Kelly, Barbar J; Bauerfeind, Rudolf; Binz, Anne; Sodeik, Beate; Laimbacher, Andrea S; Fraefel, C; Diefenbach, Russel J (2014). The interaction of the HSV-1 tegument proteins pUL36 and pUL37 is essential for secondary envelopment during viral egress. Virology, 454-455:67-77.

Dudler, Robert (2014). The role of bacterial phytotoxins in inhibiting the eukaryotic proteasome. Trends in Microbiology, 22(1):28-35.

Sorce, Silvia; Nuvolone, Mario; Keller, Annika; Falsig, Jeppe; Varol, Ahmet; Schwarz, Petra; Bieri, Monika; Budka, Herbert; Aguzzi, Adriano (2014). The role of the NADPH oxidase NOX2 in prion pathogenesis. PLoS Pathogens, 10(12):e1004531.

Somoskovi, A; Helbling, P; Deggim, V; Hömke, R; Ritter, C; Böttger, E C (2014). Transmission of multidrug-resistant tuberculosis in a low-incidence setting, Switzerland, 2006 to 2012. Eurosurveillance, 19(11):4.

Hornok, Sándor; Földvári, Gábor; Rigó, Krisztina; Meli, Marina L; Tóth, Mária; Molnár, Viktor; Gönczi, Enikő; Farkas, Róbert; Hofmann-Lehmann, Regina (2014). Vector-borne agents detected in fleas of the northern white-breasted hedgehog. Vector Borne and Zoonotic Diseases, 14(1):74-76.

Bányai, K; Borzák, R; Ihász, K; Fehér, E; Dán, A; Jakab, F; Papp, T; Hetzel, U; Marschang, R E; Farkas, S L (2014). Whole-genome sequencing of a green bush viper reovirus reveals a shared evolutionary history between reptilian and unusual mammalian orthoreoviruses. Archives of Virology, 159(1):153-158.

2013

Gladiator, André; LeibundGut-Landmann, Salomé (2013). Innate lymphoid cells: new players in IL-17-mediated antifungal immunity. PLoS Pathogens, 9(12):e1003763.

Wang, I-Hsuan; Suomalainen, Maarit; Andriasyan, Vardan; Kilcher, Samuel; Mercer, Jason; Neef, Anne; Luedtke, Nathan W; Greber, Urs F (2013). Tracking viral genomes in host cells at single-molecule resolution. Cell Host & Microbe, 14(4):468-480.

Suomalainen, Maarit; Luisoni, Stefania; Boucke, Karin; Bianchi, Sarah; Engel, Daniel A; Greber, Urs F (2013). A direct and versatile assay measuring membrane penetration of adenovirus in single cells. Journal of Virology, (01833):13.

Hauber, I; Hofmann-Sieber, H; Chemnitz, J; Dubrau, D; Chusainow, J; Stucka, R; Hartjen, P; Schambach, A; Ziegler, P; Hackmann, K; Schröck, E; Schumacher, U; Lindner, C; Grundhoff, A; Baum, C; Manz, M G; Buchholz, F; Hauber, J (2013). Highly significant antiviral activity of HIV-1 LTR-specific tre-recombinase in humanized mice. PLoS Pathogens, 9(9):e1003587.

Moelling, Karin (2013). What contemporary viruses tell us about evolution: a personal view. Archives of Virology, 158(9):1833-1848.

Lohrmann, F; Dijkman, R; Stertz, S; Thiel, V; Haller, O; Staeheli, P; Kochs, G (2013). Emergence of a C-terminal seve 1 n amino acid elongation of NS1 around 1950 2 conferred a minor growth advantage to former seasonal influenza A viruses. Journal of Virology, 87(20):11300-11303.

Vonaesch, Pascale; Cardini, Steven; Sellin, Mikael E; Goud, Bruno; Hardt, Wolf-Dietrich; Schauer, Kristine (2013). Quantitative insights into actin rearrangements and bacterial target site selection fromSalmonella Typhimurium infection of micropatterned cells. Cellular Microbiology, 15(11):1851-1865.

Alamares-Sapuay, J G; Martinez-Gil, L; Stertz, S; Miller, M S; Shaw, M L; Palese, P (2013). Serum- and glucocorticoid-regulated kinase 1 is required for nuclear export of the ribonucleoprotein of influenza A virus. Journal of Virology, 87(10):6020-6026.

Suomalainen, Maarit; Greber, Urs F (2013). Uncoating of non-enveloped viruses. Current Opinion in Virology, (12):192-197.

Hoot, Sam; McGuire, Andrew T; Cohen, Kristen W; Strong, Roland K; Hangartner, Lars; Klein, Florian; Diskin, Ron; Scheid, Johannes F; Sather, D Noah; Burton, Dennis R; Stamatatos, Leonidas (2013). Recombinant HIV Envelope Proteins Fail to Engage Germline Versions of Anti-CD4bs bNAbs. PLoS Pathogens, 9(1):e003106.

Mohammadi, Pejman; Desfarges, Sébastien; Bartha, István; Joos, Beda; Zangger, Nadine; Muñoz, Miguel; Günthard, Huldrych F; Beerenwinkel, Niko; Telenti, Amalio; Ciuffi, Angela (2013). 24 hours in the life of HIV-1 in a T cell line. PLoS Pathogens, 9(1):e1003161.

Jensenius, Mogens; Han, Pauline V; Schlagenhauf, Patricia; Schwartz, Eli; Parola, Philippe; Castelli, Francesco; von Sonnenburg, Frank; Loutan, Louis; Leder, Karin; Freedman, David O (2013). Acute and potentially life-threatening tropical diseases in western travelers - a geosentinel multicenter study, 1996-2011. American Journal of Tropical Medicine and Hygiene, 88(2):397-404.

Wolfrum, Nina; Greber, Urs F (2013). Adenovirus Signalling in Entry. Cellular Microbiology, 15(1):53-62.

Mann, Axel; Friedrich, Nikolas; Krarup, Anders; Weber, Jacqueline; Stiegeler, Emanuel; Dreier, Birgit; Pugach, Pavel; Robbiani, Melissa; Riedel, Tina; Moehle, Kerstin; Robinson, John A; Rusert, Peter; Plückthun, Andreas; Trkola, Alexandra (2013). Conformation-dependent recognition of HIV gp120 by designed ankyrin repeat proteins provides access to novel HIV entry inhibitors. Journal of Virology, 87(10):5868-5881.

Vratskikh, Oksana; Stiasny, Karin; Zlatkovic, Jürgen; Tsouchnikas, Georgios; Jarmer, Johanna; Karrer, Urs; Roggendorf, Michael; Roggendorf, Hedwig; Allwinn, Regina; Heinz, Franz X (2013). Dissection of antibody specificities induced by yellow fever vaccination. PLoS Pathogens, 9(6):e1003458.

Brennan, Daniel C; Aguado, José M; Potena, Luciano; Jardine, Alan G; Legendre, Christophe; Säemann, Marcus D; Mueller, Nicolas J; Merville, Pierre; Emery, Vincent; Nashan, Björn (2013). Effect of maintenance immunosuppressive drugs on virus pathobiology: evidence and potential mechanisms. Reviews in Medical Virology, 23(2):97-125.

Edinger, T O; Pohl, M O; Stertz, S (2013). Entry of influenza A virus: host factors and antiviral targets. Journal of General Virology, 95:263-277.

Faso, C; Konrad, C; Schraner, E M; Hehl, A B (2013). Export of cyst wall material and Golgi organelle neogenesis in Giardia lamblia depends on ER exit sites. Cellular Microbiology, 15(4):537-553.

Lange, C E; Vetsch, E; Ackermann, M; Favrot, C; Tobler, K (2013). Four novel papillomavirus sequences support a broad diversity among equine papillomaviruses. Journal of General Virology, 94(Pt 6):1365-1372.

Kouyos, Roger; Klein, Eili; Grenfell, Bryan (2013). Hospital-community interactions foster coexistence between methicillin-resistant strains of Staphylococcus aureus. PLoS Pathogens, 9(2):e1003134.

Deubelbeiss, A N; Trachsel, C; Bachli, E B; Kuffer, A; Budka, H; Eniseyskiy, P; Zimmermann, H; Wallace, R M; Farley, S; Zanoni, R G (2013). Imported human rabies in Switzerland, 2012: a diagnostic conundrum. Journal of Clinical Virology, 57(2):178-181.

González-Carmona, Maria A; Quasdorff, Maria; Vogt, Annabelle; Tamke, Anja; Yildiz, Yildiz; Hoffmann, Per; Lehmann, Thomas; Bartenschlager, Ralf; Engels, Joachim W; Kullak-Ublick, Gerd A; Sauerbruch, Tilman; Caselmann, Wolfgang H (2013). Inhibition of hepatitis C virus RNA translation by antisense bile acid conjugated phosphorothioate modified oligodeoxynucleotides (ODN). Antiviral Research, 97(1):49-59.

Hetzel, U; Sironen, T; Laurinmäki, P; Liljeroos, L; Patjas, A; Henttonen, H; Vaheri, A; Artelt, A; Kipar, A; Butcher, S J; Vapalahti, O; Hepojoki, J (2013). Isolation, identification, and characterization of novel arenaviruses, the etiological agents of boid inclusion body disease. Journal of Virology, 87(20):10918-10935.

Richter, Kirsten; Perriard, Guillaume; Behrendt, Rayk; Schwendener, Reto A; Sexl, Veronika; Dunn, Robert; Kamanaka, Masahito; Flavell, Richard A; Roers, Axel; Oxenius, Annette (2013). Macrophage and T cell produced IL-10 promotes viral chronicity. PLoS Pathogens, 9(11):e1003735.

Greber, Urs F; Arnberg, Niklas; Wadell, Göran; Benkő, Mária; Kremer, Eric J (2013). Meeting Report: Adenoviruses - from pathogens to therapeutics. Cellular Microbiology, 15(1):16-23.

Maier, Lisa; Vyas, Rounak; Cordova, Carmen Dolores; Lindsay, Helen; Schmidt, Thomas Sebastian Benedikt; Brugiroux, Sandrine; Periaswamy, Balamurugan; Bauer, Rebekka; Sturm, Alexander; Schreiber, Frank; von Mering, Christian; Robinson, Mark D; Stecher, Bärbel; Hardt, Wolf-Dietrich (2013). Microbiota-derived hydrogen fuels salmonella typhimurium invasion of the gut ecosystem. Cell Host & Microbe, 14(6):641-651.

Hächler, H; Marti, G; Giannini, P; Lehner, Angelika; Jost, M; Beck, J; Weiss, F; Bally, B; Jermini, M; Stephan, Roger; Baumgartner, A (2013). Outbreak of listerosis due to imported cooked ham, Switzerland 2011. Eurosurveillance, 18(18):20469.

Steeb, Benjamin; Claudi, Beatrice; Burton, Neil A; Tienz, Petra; Schmidt, Alexander; Farhan, Hesso; Mazé, Alain; Bumann, Dirk (2013). Parallel Exploitation of Diverse Host Nutrients Enhances Salmonella Virulence. PLoS Pathogens, 9(4):e1003301.

Masimba, Pax; Kituma, Elimsaada; Klimkait, Thomas; Horvath, Edit; Stoeckle, Marcel; Hatz, Christoph; Mossdorf, Erick; Mwaigomole, Emmanuel; Khamis, Salim; Jullu, Boniphace; Abdulla, Salim; Tanner, Marcel; Felger, Ingrid (2013). Prevalence of drug resistance mutations and HIV type 1 subtypes in an HIV type 1-infected cohort in rural Tanzania. AIDS Research and Human Retroviruses, 29(9):1229-1236.

Kreizinger, Zsuzsa; Hornok, Sándor; Dán, Adám; Hresko, Stanislav; Makrai, László; Magyar, Tibor; Bhide, Mangesh; Erdélyi, Károly; Hofmann-Lehmann, Regina; Gyuranecz, Miklós (2013). Prevalence of francisella tularensis and francisella-like endosymbionts in the tick population of hungary and the genetic variability of francisella-like agents. Vector Borne and Zoonotic Diseases, 13(3):160-163.

Sauteur, Patrick M Meyer; Relly, Christa; Hug, Martina; Wittenbrink, Max M; Berger, Christoph (2013). Risk factors for invasive reptile-associated salmonellosis in children. Vector Borne and Zoonotic Diseases, 13(6):419-421.

Engler, O; Klingstrom, J; Aliyev, E; Niederhauser, C; Fontana, S; Strasser, M; Portmann, J; Signer, J; Bankoul, S; Frey, F; Hatz, C; Stutz, A; Tschaggelar, A; Mütsch, Margot (2013). Seroprevalence of hantavirus infections in Switzerland in 2009: difficulties in determining prevalence in a country with low endemicity. Eurosurveillance, 18(50):20660.

Hornok, Sándor; Csörgő, Tibor; de la Fuente, José; Gyuranecz, Miklós; Privigyei, Csaba; Meli, Marina L; Kreizinger, Zsuzsa; Gönczi, Enikő; Fernández de Mera, Isabel G; Hofmann-Lehmann, Regina (2013). Synanthropic birds associated with high prevalence of tick-borne rickettsiae and with the first detection of rickettsia aeschlimannii in Hungary. Vector Borne and Zoonotic Diseases, 13(2):77-83.

Jelcic, I; Aly, L; Binder, T M C; Jelcic, I; Bofill-Mas, S; Planas, R; Demina, V; Eiermann, T H; Weber, T; Girones, R; Sospedra, M; Martin, R (2013). T cell epitope mapping of JC polyoma virus-encoded proteome reveals reduced T cell responses in HLA-DRB1*04:01+ donors. Journal of Virology, 87(6):3393-3408.

George, Christine Marie; Inauen, Jennifer; Rahman, Sheikh Masudur; Zheng, Yan (2013). The effectiveness of educational interventions to enhance the adoption of fee-based arsenic testing in Bangladesh: a cluster randomized controlled trial. American Journal of Tropical Medicine and Hygiene, 89(1):138-144.

Johnson, Victoria A; Calvez, Vincent; Gunthard, Huldrych F; Paredes, Roger; Pillay, Deenan; Shafer, Robert W; Wensing, Annemarie M; Richman, Douglas D (2013). Update of the drug resistance mutations in HIV-1: March 2013. Topics in Antiviral Medicine, 21(1):6-14.

Mercer, Jason; Greber, Urs F (2013). Virus interactions with endocytic pathways in macrophages and dendritic cells. Trends in Microbiology, 21(8):380-388.

Zabel, Franziska; Kündig, Thomas M; Bachmann, Martin F (2013). Virus-induced humoral immunity: on how B cell responses are initiated. Current Opinion in Virology, 3(3):357-362.

2012

Jurgeit, Andreas; McDowell, Robert; Moese, Stefan; Meldrum, Eric; Schwendener, Reto; Greber, Urs F (2012). Niclosamide is a proton carrier and targets acidic endosomes with broad antiviral effects. PLoS Pathogens, 8(10):e1002976.

Schliehe, Christopher; Bitzer, Annegret; van den Broek, Maries; Groettrup, Marcus (2012). Stable antigen is most effective for eliciting CD8+ T-cell responses after DNA vaccination and infection with recombinant vaccinia virus in vivo. Journal of Virology, 86(18):9782-9793.

Yakimovich, A; Gumpert, H; Burckhardt, C J; Lutschg, V A; Jurgeit, A; Sbalzarini, I F; Greber, U F (2012). Cell-free transmission of human adenovirus by passive mass transfer in cell culture simulated in a computer model. Journal of Virology, 86(18):10123-10137.

Wild, Peter; de Oliveira, Anna Paula; Sonda, Sabrina; Schraner, Elisabeth M; Ackermann, Mathias; Tobler, Kurt (2012). The herpes simplex virus 1 U(S)3 regulates phospholipid synthesis. Virology, 432(2):353-360.

Schubert, Mario; Bleuler-Martinez, Silvia; Butschi, Alex; Wälti, Martin A; Egloff, Pascal; Stutz, Katrin; Yan, Shi; Wilson, Iain B H; Hengartner, Michael O; Aebi, Markus; Allain, Frédéric H-T; Künzler, Markus (2012). Plasticity of the β-Trefoil Protein Fold in the Recognition and Control of Invertebrate Predators and Parasites by a Fungal Defence System. PLoS Pathogens, 8(5):e1002706.

Sutter, Esther; de Oliveira, Anna Paula; Tobler, Kurt; Schraner, Elisabeth M; Sonda, Sabrina; Kaech, Andres; Lucas, Miriam S; Ackermann, M; Wild, Peter (2012). Herpes simplex virus 1 induces de novo phospholipid synthesis. Virology, 429(2):124-135.

Günther, V; Strassen, T; Lindert, U; Dagani, P; Waldvogel, D; Georgiev, O; Schaffner, W; Bethge, T (2012). Simian virus 40 (SV40) strains with novel properties generated by replacing the viral enhancer with synthetic oligonucleotides. Journal of Virology, 86(6):3135-3142.

Ruhl, Marianne; Chhatwal, Patrick; Strathmann, Heiko; Kuntzen, Thomas; Bankwitz, Dorothea; Skibbe, Kathrin; Walker, Andreas; Heinemann, Falko M; Horn, Peter A; Allen, Todd M; Hoffmann, Daniel; Pietschmann, Thomas; Timm, Jörg (2012). Escape from a dominant HLA-B*15-restricted CD8+ T cell response against hepatitis C virus requires compensatory mutations outside the epitope. Journal of Virology, 86(2):991-1000.

Medlock, J M; Hansford, K M; Schaffner, Francis; Versteirt, V; Hendrickx, G; Zeller, H; Van Bortel, W (2012). A review of the invasive mosquitoes in Europe: Ecology, public health risks, and control options. Vector-Borne and Zoonotic Diseases, 12(6):435-447.

Vogel, R; Seyffert, M; Strasser, R; de Oliveira, A P; Dresch, C; Glauser, D L; Jolinon, N; Salvetti, A; Weitzman, M D; Fraefel, C; Ackermann, M (2012). Adeno-associated virus type 2 modulates the host DNA damage response induced by herpes simplex virus type 1 during co-infection. Journal of Virology, 86(1):143-155.

Trinh, H V; Lesage, G; Chennamparampil, V; Vollenweider, B; Burckhardt, C J; Schauer, S; Havenga, M; Greber, U F; Hemmi, S (2012). Avidity binding of human adenovirus serotypes 3 and 7 to the membrane cofactor CD46 triggers infection. Journal of Virology, 86(3):1623-1637.

Abela, Irene A; Berlinger, Livia; Schanz, Merle; Reynell, Lucy; Günthard, Huldrych F; Rusert, Peter; Trkola, Alexandra (2012). Cell-cell transmission enables HIV-1 to evade inhibition by potent CD4bs directed antibodies. PLoS Pathogens, 8(4):e1002634.

Uchiyama, Satoshi; Andreoni, Federica; Schuepbach, Reto A; Nizet, Victor; Zinkernagel, Annelies S (2012). DNase Sda1 allows invasive M1T1 Group A Streptococcus to prevent TLR9-dependent recognition. PLoS Pathogens, 8(6):e1002736.

Smajlović, Lejla; Davoren, Jon; Heyman, Paul; Cochez, Christel; Haas, Cordula; Maake, Caroline; Hukić, Mirsada (2012). Development and optimization of a PCR assay for detection of Dobrava and Puumala hantaviruses in Bosnia and Herzegovina. Journal of Virological Methods, 182(1-2):37-42.

Sais, Giovanni; Wyler, Stephen; Hudolin, Tvrtko; Banzola, Irina; Mengus, Chantal; Bubendorf, Lukas; Wild, Peter J; Hirsch, Hans H; Sulser, Tullio; Spagnoli, Giulio C; Provenzano, Maurizio (2012). Differential patterns of Large Tumor Antigen specific immune responsiveness in patients with BK polyomavirus positive prostate cancer or benign prostatic hyperplasia. Journal of Virology, 86(16):8461-8471.

Lange, C E; Ackermann, M; Favrot, C; Tobler, K (2012). Entire genomic sequence of novel canine papillomavirus type 13. Journal of Virology, 86(18):10226-10227.

Wollersheim, Sonja; Fedarava, Katisaryna; Huebler, Michael; Schneiderhan-Marra, Nicole; Berger, Felix; Miera, Oliver; Schmitt, Katharina R (2012). Establishment of a coculture model for studying inflammation after pediatric cardiopulmonary bypass: from bench to bedside. Journal of Interferon & Cytokine Research, 32(6):269-276.

Aguzzi, Adriano; Zhu, Caihong (2012). Five questions on prion diseases. PLoS Pathogens, 8(5):e1002651.

Bargielowski, Irka; Kaufmann, Christian; Alphey, Luke; Reiter, Paul; Koella, Jacob (2012). Flight performance and teneral energy reserves of two genetically-modified and one wild-type strain of the yellow fever mosquito Aedes aegypti. Vector Borne and Zoonotic Diseases, 12(12):1053-1058.

Mekker, Andrea; Tchang, Vincent S; Haeberli, Lea; Oxenius, Annette; Trkola, Alexandra; Karrer, Urs (2012). Immune senescence: relative contributions of age and cytomegalovirus infection. PLoS Pathogens, 8(8):e1002850.

Barat, Somedutta; Willer, Yvonne; Rizos, Konstantin; Claudi, Beatrice; Mazé, Alain; Schemmer, Anne K; Kirchhoff, Dennis; Schmidt, Alexander; Burton, Neil; Bumann, Dirk (2012). Immunity to Intracellular Salmonella Depends on Surface-associated Antigens. PLoS Pathogens, 8(10):e1002966.

Gautret, P; Cramer, J P; Field, V; Caumes, E; Jensenius, M; Gkrania-Klotsas, E; de Vries, P J; Grobusch, M P; Lopez-Velez, R; Castelli, F; Schlagenhauf, Patricia; Hervius Askling, H; von Sonnenburg, F; Lalloo, D G; Loutan, L; Rapp, C; Basto, F; Santos O'Connor, F; Weld, L; Parola, Philippe (2012). Infectious diseases among travellers and migrants in Europe, EuroTravNet 2010. Euro Surveillance, 17(26):pii: 20205.

O'Connor, Tracy; Frei, Nathalie; Sponarova, Jana; Schwarz, Petra; Heikenwalder, Mathias; Aguzzi, Adriano (2012). Lymphotoxin, but Not TNF, Is Required for Prion Invasion of Lymph Nodes. PLoS Pathogens, 8(8):e1002867.

Misselwitz, Benjamin; Barrett, Naomi; Kreibich, Saskia; Vonaesch, Pascale; Andritschke, Daniel; Rout, Samuel; Weidner, Kerstin; Sormaz, Milos; Songhet, Pascal; Horvath, Peter; Chabria, Mamta; Vogel, Viola; Spori, Doris M; Jenny, Patrick; Hardt, Wolf-Dietrich (2012). Near surface swimming of Salmonella Typhimurium explains target-site selection and cooperative invasion. PLoS Pathogens, 8(7):e1002810.

Tracy, Sean I; Kakalacheva, Kristina; Lünemann, Jan D; Luzuriaga, Katherine; Middeldorp, Jaap; Thorley-Lawson, David A (2012). Persistence of Epstein-Barr virus in self-reactive memory B cells. Journal of Virology, 86(22):12330-12340.

Gyuranecz, Miklós; Dénes, Béla; Hornok, Sándor; Kovács, Péter; Horváth, Gábor; Jurkovich, Viktor; Varga, Tamás; Hajtós, István; Szabó, Réka; Magyar, Tibor; Vass, Nóra; Hofmann-Lehmann, Regina; Erdélyi, Károly; Bhide, Mangesh; Dán, Ádám (2012). Prevalence of Coxiella burnetii in Hungary: screening of dairy cows, sheep, commercial milk samples, and ticks. Vector Borne and Zoonotic Diseases, 12(8):650-653.

Falsig, Jeppe; Sonati, Tiziana; Herrmann, Uli S; Saban, Dino; Li, Bei; Arroyo, Karina; Ballmer, Boris; Liberski, Pawel P; Aguzzi, Adriano (2012). Prion pathogenesis is faithfully reproduced in cerebellar organotypic slice cultures. PLoS Pathogens, 8(11):e1002985.

De Lorenzo, G; Eichwald, C; Schraner, E M; Nicolin, V; Bortul, R; Mano, M; Burrone, O R; Arnoldi, F (2012). Production of in vivo-biotinylated rotavirus particles. Journal of General Virology, 93(Pt7):1474-1482.

Stiasny, K; Aberle, J H; Chmelik, V; Karrer, U; Holzmann, H; Heinz, F X (2012). Quantitative determination of IgM antibodies reduces the pitfalls in the serodiagnosis of tick-borne encephalitis. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology, 54(2):115-120.

Schlagenhauf, Patricia; Petersen, Eskild (2012). Standby emergency treatment of malaria in travelers: experience to date and new developments. Expert Review of Anti-infective Therapy, 10(5):537-546.

Grütter, Markus G; Luban, Jeremy (2012). TRIM5 structure, HIV-1 capsid recognition, and innate immune signaling. Current Opinion in Virology, 2(2):142-150.

Althaus, Claudia F; Vongrad, Valentina; Niederöst, Barbara; Joos, Beda; Di Giallonardo, Francesca; Rieder, Philip; Pavlovic, Jovan; Trkola, Alexandra; Günthard, Huldrych F; Metzner, Karin J; Fischer, Marek (2012). Tailored enrichment strategy detects low abundant small noncoding RNAs in HIV-1 infected cells. Retrovirology, 9:27.

Duncan, A J; Gunn, G J; Lewis, F I; Umstatter, C; Humphry, R W (2012). The influence of empirical contact networks on modelling diseases in cattle. Epidemics, 4(3):117-123.

Werner, D; Kronefeld, M; Schaffner, Francis; Kampen, H (2012). Two invasive mosquito species, Aedes albopictus and Aedes japonicus japonicus, trapped in south-west Germany, July to August 2011. Eurosurveillance, 17(4):pii20067.

Henn, Matthew R; Boutwell, Christian L; Charlebois, Patrick; Lennon, Niall J; Power, Karen A; Macalalad, Alexander R; Berlin, Aaron M; Malboeuf, Christine M; Ryan, Elizabeth M; Gnerre, Sante; Zody, Michael C; Erlich, Rachel L; Green, Lisa M; Berical, Andrew; Wang, Yaoyu; Casali, Monica; Streeck, Hendrik; Bloom, Allyson K; Dudek, Tim; Tully, Damien; Newman, Ruchi; Axten, Karen L; Gladden, Adrianne D; Battis, Laura; Kemper, Michael; Zeng, Qiandong; Shea, Terrance P; Gujja, Sharvari; Zedlack, Carmen; Gasser, Olivier; Brander, Christian; Hess, Christoph; Günthard, Huldrych F; Brumme, Zabrina L; Brumme, Chanson J; Bazner, Suzane; Rychert, Jenna; Tinsley, Jake P; Mayer, Ken H; Rosenberg, Eric; Pereyra, Florencia; Levin, Joshua Z; Young, Sarah K; Jessen, Heiko; Altfeld, Marcus; Birren, Bruce W; Walker, Bruce D; Allen, Todd M (2012). Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection. PLoS Pathogens, 8(3):e1002529.

2011

Kelly, B J; Mijatov, Branka; Fraefel, C; Cunningham, A L; Diefenbach, R J (2011). Identification of a single amino acid residue which is critical for the interaction between HSV-1 inner tegument proteins pUL36 and pUL37. Virology:1-9.

Strunze, S; Engelke, M F; Wang, I-H; Puntener, D; Boucke, K; Schleich, S; Way, M; Schoenenberger, P; Burckhardt, C J; Greber, U F (2011). Kinesin-1-mediated capsid disassembly and disruption of the nuclear pore complex promote virus infection. Cell Host & Microbe, 10(3):210-223.

Villaudy, J; Wencker, M; Gadot, N; Gillet, N A; Scoazec, J Y; Gazzolo, Louis; Manz, M G; Bangham, C R M; Dodon, M D (2011). HTLV-1 propels thymic human T cell development in "human immune system" Rag2⁻/⁻ gamma c⁻/⁻ mice. PLoS Pathogens, 7(9):e1002231.

Wisskirchen, C; Ludersdorfer, T H; Müller, D A; Moritz, E; Pavlovic, J (2011). The cellular RNA helicase UAP56 is required for prevention of double-stranded RNA formation during influenza A virus infection. Journal of Virology, 85(17):8646-8655.

Münz, C (2011). Beclin-1 targeting for viral immune escape. Viruses, 3(7):1166-1178.

Dewals, B; Myster, F; Palmeira, L; Gillet, L; Ackermann, M; Vanderplasschen, A (2011). Ex vivo bioluminescence detection of alcelaphine herpesvirus 1 infection during malignant catarrhal fever. Journal of Virology, 85(14):6941-6954.

Lalonde, M S; Lobritz, M A; Ratcliff, A; Chamanian, M; Athanassiou, Z; Tyagi, M; Wong, J; Robinson, J A; Karn, J; Varani, G; Arts, Eric J (2011). Inhibition of both HIV-1 reverse transcription and gene expression by a cyclic peptide that binds the Tat-transactivating response element (TAR) RNA. PLoS Pathogens, 7(5):e1002038.

Hughes, David J; Kipar, Anja; Leeming, Gail H; Bennett, Elaine; Howarth, Deborah; Cummerson, Joanne A; Papoula-Pereira, Rita; Flanagan, Brian F; Sample, Jeffery T; Stewart, James P (2011). Chemokine binding protein M3 of murine gammaherpesvirus 68 modulates the host response to infection in a natural host. PLoS Pathogens, 7(3):e1001321.

Engelke, M F; Burckhardt, C J; Morf, M K; Greber, U F (2011). The dynactin complex enhances the speed of microtubule-dependent motions of adenovirus both towards and away from the nucleus. Viruses, 3(3):233-253.

Johnson, V A; Calvez, V; Gunthard, H F; Paredes, R; Pillay, D; Shafer, R; Wensing, A M; Richman, D D (2011). 2011 update of the drug resistance mutations in HIV-1. Topics in Antiviral Medicine, 19(4):156-164.

Haybaeck, J; Heikenwalder, M; Klevenz, B; Schwarz, P; Margalith, I; Bridel, C; Mertz, Kirsten; Zirdum, E; Petsch, B; Fuchs, T J; Stitz, L; Aguzzi, A (2011). Aerosols transmit prions to immunocompetent and immunodeficient mice. PLoS Pathogens, 7(1):e1001257.

Oufir, M; Bisset, L R; Hoffmann, S R K; Xue, G; Klauser, S; Bergamaschi, B; Gervaix, A; Böni, J; Schüpbach, J; Gutte, B (2011). Artificial 64-residue HIV-1 enhancer-binding peptide is a potent inhibitor of viral replication in HIV-1-infected cells. Advances in Virology, 2011:165871.

Kouyos, R D; von Wyl, V; Hinkley, T; Petropoulos, C J; Haddad, M; Whitcomb, J M; Böni, J; Yerly, S; Cellerai, C; Klimkait, T; Günthard, H F; Bonhoeffer, S (2011). Assessing predicted HIV-1 replicative capacity in a clinical setting. PLoS Pathogens, 7(11):e1002321.

Khaiseb, S; Sydler, T; Zimmermann, D R; Pospischil, A; Sidler, X; Brugnera, E (2011). Coreplication of the major genotype group members of porcine circovirus type 2 as a prerequisite to coevolution may explain the variable disease manifestations. Journal of Virology, 85(21):11111-11120.

Burckhardt, C J; Suomalainen, M; Schoenenberger, P; Boucke, K; Hemmi, S; Greber, U F (2011). Drifting Motions of the Adenovirus Receptor CAR and Immobile Integrins Initiate Virus Uncoating and Membrane Lytic Protein Exposure. Cell Host & Microbe, 10(2):105-117.

Audigé, Annette; Hofer, Ursula; Dittmer, Ulf; van den Broek, Maries; Speck, Roberto F (2011). Evaluation of the immunomodulatory and antiviral effects of the cytokine combination IFN-α and IL-7 in the lymphocytic choriomeningitis virus and Friend retrovirus mouse infection models. Viral Immunology, 24(5):375-85.

Geret, C P; Cattori, V; Meli, Marina L; Riond, Barbara; Martínez, F; López, G; Vargas, A; Simón, M A; López-Bao, J V; Hofmann-Lehmann, R; Lutz, H (2011). Feline leukemia virus outbreak in the critically endangered Iberian lynx (Lynx pardinus): high-throughput sequencing of envelope variable region A and experimental transmission. Archives of Virology, 156(5):839-854.

Hornok, S; de la Fuente, J; Biró, N; Fernández de Mera, I G; Meli, Marina L; Elek, V; Gönczi, E; Meili, T; Tánczos, B; Farkas, R; Lutz, H; Hofmann-Lehmann, R (2011). First molecular evidence of Anaplasma ovis and Rickettsia spp. in keds (Diptera: Hippoboscidae) of sheep and wild ruminants. Vector Borne and Zoonotic Diseases, 11(10):1319-1321.

Hemmi, S; Vidovszky, M Z; Ruminska, J; Ramelli, S; Decurtins, W; Greber, U F; Harrach, B (2011). Genomic and phylogenetic analyses of murine adenovirus 2. Virus Research, 160(1-2):128-135.

Knoepfel, S A; Di Giallonardo, F; Däumer, M; Thielen, A; Metzner, K J (2011). In-depth analysis of G-to-A hypermutation rate in HIV-1 env DNA induced by endogenous APOBEC3 proteins using massively parallel sequencing. Journal of Virological Methods, 171(2):329-338.

Kovari, H; Weber, R (2011). Influence of antiretroviral therapy on liver disease. Current Opinion in HIV and AIDS, 6(4):272-277.

Glauser, D L; Fraefel, C (2011). Interactions between AAV-2 and HSV-1: implications for hybrid vector design. Future Virology, 6(4):483-501.

Magenta, L; Dell-Kuster, S; Richter, W O; Young, J; Hasse, B; Flepp, M; Hirschel, B; Vernazza, P; Evison, J; Cavassini, M; Decosterd, L A; Bucher, H C; Bernasconi, E (2011). Lipid and lipoprotein profile in HIV-infected patients treated with Lopinavir/Ritonavir as a component of the first combination antiretroviral therapy. AIDS Research and Human Retroviruses, 27(5):525-533.

Lange, C E; Favrot, C; Ackermann, M; Gull, J; Vetsch, E; Tobler, K (2011). Novel snake papillomavirus does not cluster with other non-mammalian papillomaviruses. Virology Journal, 8:436.

Metzner, K J; Rauch, P; Braun, P; Knechten, H; Ehret, R; Korn, K; Kaiser, R; Sichtig, N; Ranneberg, B; van Lunzen, J; Walter, H (2011). Prevalence of key resistance mutations K65R, K103N, and M184V as minority HIV-1 variants in chronically HIV-1 infected, treatment-naïve patients. Journal of Clinical Virology, 50(2):156-161.

Ligios, C; Cancedda, M G; Carta, A; Santucciu, C; Maestrale, C; Demontis, F; Saba, M; Patta, C; Demartini, J C; Aguzzi, A; Sigurdson, C J (2011). Sheep with scrapie and mastitis transmit infectious prions through the milk. Journal of Virology, 85(2):1136-1139.

Püntener, D; Engelke, M F; Ruzsics, Z; Strunze, S; Wilhelm, C; Greber, U F (2011). Stepwise loss of fluorescent core protein V from human adenovirus during entry into cells. Journal of Virology, 85(1):481-496.

Iwata, R; Stieger, B; Mertens, J C; Müller, T; Baur, K; Frei, P; Braun, J; Vergopoulos, A; Martin, I V; Schmitt, J; Goetze, O; Bibert, S; Bochud, P Y; Müllhaupt, B; Berg, T; Geier, A (2011). The role of bile acid retention and a common polymorphism in the ABCB11 gene as host factors affecting antiviral treatment response in chronic hepatitis C. Journal of Viral Hepatitis, 18(11):768-778.

Ayers, J I; Schutt, C R; Shikiya, R A; Aguzzi, A; Kincaid, A E; Bartz, J C (2011). The strain-encoded relationship between PrP replication, stability and processing in neurons is predictive of the incubation period of disease. PLoS Pathogens, 7(3):e1001317.

Greber, U F; Cosset, F L (2011). Too smart to fail—how viruses exploit the complexity of host cells during entry. Current Opinion in Virology, 1(1):3-5.

Seto, D; Chodosh, J; Brister, J R; Jones, M S (2011). Using the whole-genome sequence to characterize and name human adenoviruses. Journal of Virology, 85(11):5701-5702.

2010

van der Ploeg, Jan R (2010). Genome sequence of the temperate bacteriophage PH10 from Streptococcus oralis. Virus Genes, 41(3):450-458.

Scholte, E J; Den Hartog, W; Dik, M; Schoelitsz, B; Brooks, M; Schaffner, Francis; Foussadier, R; Braks, M; Beeuwkes, J (2010). Introduction and control of three invasive mosquito species in the Netherlands, July-October 2010. Eurosurveillance, 15(45):19710.

Tekes, G; Hofmann-Lehmann, R; Bank-Wolf, B; Maier, R; Thiel, H J; Thiel, V (2010). Chimeric feline coronaviruses that encode type II spike protein on type I genetic background display accelerated viral growth and altered receptor usage. Journal of Virology, 84(3):1326-1333.

Jurgeit, A; Moese, S; Roulin, P; Dorsch, A; Lötzerich, M; Lee, W M; Greber, U F (2010). An RNA replication-center assay for high content image-based quantifications of human rhinovirus and coxsackievirus infections. Virology Journal, 7(1):264.

Dorner, M; Zucol, F; Alessi, D; Haerle, S K; Bossart, W; Weber, M; Byland, R; Bernasconi, M; Berger, C; Tugizov, S; Speck, R F; Nadal, D (2010). {beta}1 Integrin Expression Increases Susceptibility of Memory B-Cells to EBV Infection. Journal of Virology, 84(13):6667-6677.

Gabev, E; Tobler, K; Abril, C; Hilbe, M; Senn, C; Franchini, M; Campadelli-Fiume, G; Fraefel, C; Ackermann, M (2010). Glycoprotein D of bovine herpesvirus 5 (BoHV-5) confers an extended host range to BoHV-1 but does not contribute to invasion of the brain. Journal of Virology, 84(11):5583-5593.

Kälin, S; Amstutz, B; Gastaldelli, M; Wolfrum, N; Boucke, K; Havenga, M; Digennaro, F; Liska, N; Hemmi, S; Greber, U F (2010). Macropinocytotic uptake and infection of human epithelial cells with species B2 adenovirus type 35. Journal of Virology, 84(10):5336-5350.

Hofer, U; Schlaepfer, E; Baenziger, S; Nischang, M; Regenass, S; Schwendener, R; Kempf, W; Nadal, D; Speck, R F (2010). Inadequate clearance of translocated bacterial products in HIV-infected humanized mice. PLoS Pathogens, 6(4):e1000867.

Konrad, C; Spycher, C; Hehl, A B (2010). Selective condensation drives partitioning and sequential secretion of cyst wall proteins in differentiating giardia lamblia. PLoS Pathogens, 6(4):e1000835.

Kipar, A; Meli, M L; Baptiste, K E; Bowker, L J; Lutz, H (2010). Sites of feline coronavirus persistence in healthy cats. Journal of General Virology, 91(7):1698-1707.

Torgerson, P R; Torgerson, D (2010). Public health and bovine tuberculosis: what's all the fuss about? Trends in Microbiology, 18(2):67-72.

Kwok, T; Helfer, H; Alam, M I; Heinrich, J; Pavlovic, J; Moelling, K (2010). Inhibition of influenza A virus replication by short double-stranded oligodeoxynucleotides. Archives of Virology, 154(1):109-14.

Song, J; Willinger, T; Rongvaux, A; Eynon, E E; Stevens, S; Manz, M G; Flavell, R A; Galán, J E (2010). A mouse model for the human pathogen Salmonella typhi. Cell Host & Microbe, 8(4):369-376.

Fontecedro, A C; Lutschg, V; Eichhoff, O; Dummer, R; Greber, U F; Hemmi, S (2010). Analysis of adenovirus trans-complementation-mediated gene expression controlled by melanoma-specific TETP promoter in vitro. Virology Journal, 7(1):175.

Audigé, A; Schlaepfer, E; von Wyl, V; Miller, R C; Vernazza, P; Nadal, D; Speck, R F (2010). B cells from HIV-infected patients with primary central nervous system lymphoma display an activated phenotype and have a blunted TNF-α response to TLR9 triggering. AIDS Research and Human Retroviruses, 26(10):1063-1074.

Butschi, A; Titz, A; Wälti, M A; Olieric, V; Paschinger, K; Nöbauer, K; Guo, X; Seeberger, P H; Wilson, I B H; Aebi, M; Hengartner, M O; Künzler, M (2010). Caenorhabditis elegans N-glycan core beta-galactoside confers sensitivity towards nematotoxic fungal galectin CGL2. PLoS Pathogens, 6(1):e1000717.

Helfer-Hungerbuehler, A K; Cattori, V; Boretti, Felicitas S; Ossent, Pete; Grest, Paula; Reinacher, M; Henrich, M; Bauer, E; Bauer-Pham, K; Niederer, E; Holznagel, E; Lutz, H; Hofmann-Lehmann, R (2010). Dominance of highly divergent feline leukemia virus A progeny variants in a cat with recurrent viremia and fatal lymphoma. Retrovirology, 7(1):14.

Kobayashi, A; Sakuma, N; Matsuura, Y; Mohri, S; Aguzzi, A; Kitamoto, T (2010). Experimental verification of a traceback phenomenon in prion infection. Journal of Virology, 84(7):3230-3238.

Rotger, M; Dang, K K; Fellay, J; Heinzen, E L; Feng, S; Descombes, P; Shianna, K V; Ge, D; Günthard, H F; Goldstein, D B; Telenti, A (2010). Genome-wide mRNA expression correlates of viral control in CD4+ T-cells from HIV-1-infected individuals. PLoS Pathogens, 6(2):e1000781.

Akgül, B; Bostanci, N; Westphal, K; Nindl, I; Navsaria, H; Storey, A; Pfister, H (2010). Human papillomavirus 5 and 8 E6 downregulate interleukin-8 secretion in primary human keratinocytes. Journal of General Virology, 91(4):888-892.

Glauser, D L; Seyffert, M; Strasser, R; Franchini, M; Laimbacher, A S; Dresch, C; de Oliveirea, A P; Vogel, R; Büning, H; Salvetti, A; Ackermann, M; Fraefel, C (2010). Inhibition of herpes simplex virus type 1 replication by Adeno-associated virus rep proteins depends on their combined DNA-binding and ATPase/Helicase activities. Journal of Virology, 84(8):3808 -3824.

Aguilar, C; Vlamakis, H; Guzman, A; Losick, R; Kolter, R (2010). Kind is a checkpoint protein linking spore formation to extracellular-matrix production in bacillus subtilis biofilms. mBio, 1(1):e00035.

Stecher, B; Chaffron, S; Käppeli, R; Hapfelmeier, S; Freedrich, S; Weber, T C; Kirundi, J; Suar, M; McCoy, K D; von Mering, C; Macpherson, A J; Hardt, W D (2010). Like will to like: abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria. PLoS Pathogens, 6(1):e1000711.

Audigé, A; Taffé, P; Rickenbach, M; Battegay, M; Vernazza, P; Nadal, D; Speck, R (2010). Low postseroconversion CD4 count and rapid decrease of CD4 density identify HIV+ fast progressors. AIDS Research and Human Retroviruses, 26(9):997-1005.

Osih, R B; Taffé, P; Rickenbach, M; Gayet-Ageron, A; Elzi, L; Fux, C; Opravil, M; Bernasconi, E; Schmid, P; Günthard, H F; Cavassini, M (2010). Outcomes of patients on dual-boosted PI regimens: experience of the Swiss HIV cohort study. AIDS Research and Human Retroviruses, 26(11):1239-1246.

Alizon, S; von Wyl, V; Stadler, T; Kouyos, R D; Yerly, S; Hirschel, B; Böni, J; Shah, C; Klimkait, T; Furrer, H; Rauch, A; Vernazza, P L; Bernasconi, E; Battegay, M; Bürgisser, P; Telenti, A; Günthard, H F; Bonhoeffer, S; Swiss HIV Cohort Study (2010). Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load. PLoS Pathogens, 6(9):e1001123.

Huber, H; Koller, S; Giezendanner, N; Stephan, Roger; Zweifel, C (2010). Prevalence and characteristics of meticillin-resistant Staphylococcus aureus in humans in contact with farm animals, in livestock, and in food of animal origin, Switzerland, 2009. Eurosurveillance, 15(16):19542.

Althaus, C F; Gianella, S; Rieder, P; von Wyl, V; Kouyos, R D; Niederöst, B; Schmid, A; Metzner, K J; Joos, B; Günthard, H F; Fischer, M (2010). Rational design of HIV-1 fluorescent hydrolysis probes considering phylogenetic variation and probe performance. Journal of Virological Methods, 165(2):151-160.

Chow, O A; von Köckritz-Blickwede, M; Bright, A T; Hensler, M E; Zinkernagel, A S; Cogen, A L; Gallo, R L; Monestier, M; Wang, Y; Glass, C K; Nizet, V (2010). Statins enhance formation of phagocyte extracellular traps. Cell Host & Microbe, 8(5):445-454.

Flatz, L; Rieger, T; Merkler, D; Bergthaler, A; Regen, T; Schedensack, M; Bestmann, L; Verschoor, A; Kreutzfeldt, M; Brück, W; Hanisch, U K; Günther, S; Pinschewer, D D (2010). T cell-dependence of Lassa fever pathogenesis. PLoS Pathogens, 6(3):e1000836.

Vayssier-Taussat, Muriel; Le Rhun, Danielle; Deng, Hong Kuan; Biville, Francis; Cescau, Sandra; Danchin, Antoine; Marignac, Geneviève; Lenaour, Evelyne; Boulouis, Henri Jean; Mavris, Maria; Arnaud, Lionel; Yang, Huanming; Wang, Jing; Quebatte, Maxime; Engel, Philipp; Saenz, Henri; Dehio, Christoph (2010). The Trw Type IV Secretion System of Bartonella Mediates Host-Specific Adhesion to Erythrocytes. PLoS Pathogens, 6(6):e1000946.

Drogan, D; Rauch, P; Hoffmann, D; Walter, H; Metzner, K J (2010). The antiretroviral potency of emtricitabine is approximately 3-fold higher compared to lamivudine in dual human immunodeficiency virus type 1 infection/competition experiments in vitro. Antiviral Research, 86(3):312-315.

Endt, K; Stecher, B; Chaffron, S; Slack, E; Tchitchek, N; Benecke, A; Van Maele, L; Sirard, J-C; Mueller, A J; Heikenwalder, M; Macpherson, A J; Strugnell, R; von Mering, C; Hardt, W-D (2010). The microbiota mediates pathogen clearance from the gut lumen after non-typhoidal Salmonella diarrhea. PLoS Pathogens, 6(9):e1001097.

Tietche, F; Chelo, D; Mina Ntoto, N K; Djoukoue, F M; Hatz, C; Frey, S; Frentzel, A; Trapp, S; Zielonka, R; Mueller, E A (2010). Tolerability and efficacy of a pediatric granule formulation of artesunate-mefloquine in young children from Cameroon with uncomplicated falciparum malaria. American Journal of Tropical Medicine and Hygiene, 82(6):1034-1040.

Veit, O; Hatz, C; Niedrig, M; Furrer, H J (2010). Yellow fever vaccination in HIV-infected patients. HIV Therapy, 4(1):17-26.

2009

Clerc, O; Cavassini, M; Böni, J; Schüpbach, J; Bürgisser, P (2009). Prolonged seroconversion in an elite controller of HIV-1 infection. Journal of Clinical Virology, 46(4):371-373.

Burckhardt, C J; Greber, U F (2009). Virus movements on the plasma membrane support infection and transmission between cells. PLoS Pathogens, 5(11):e1000621.

Imelli, N; Ruzsics, Z; Puntener, D; Gastaldelli, M; Greber, U F (2009). Genetic reconstitution of the human adenovirus type 2 temperature-sensitive 1 mutant defective in endosomal escape. Virology Journal, 6:174.

Gautret, P; Clerinx, J; Caumes, E; Simon, F; Jensenius, M; Loutan, L; Schlagenhauf, Patricia; Castelli, F; Freedman, D; Miller, A; Bronner, U; Parola, P (2009). Imported human African trypanosomiasis in Europe, 2005-2009. Euro Surveillance, 14(36):1-3.

Müller, A J; Hoffmann, C; Galle, M; van den Broeke, A; Heikenwalder, M; Falter, L; Misselwitz, B; Kremer, M; Beyaert, R; Hardt, W D (2009). The S. Typhimurium effector SopE induces caspase-1 activation in stromal cells to initiate gut inflammation. Cell Host & Microbe, 6(2):125-136.

Lange, C E; Tobler, K; Ackermann, M; Panakova, L; Thoday, K L; Favrot, C (2009). Three novel canine papillomaviruses support taxonomic clade formation. Journal of General Virology, 90(Pt 11):2615-2621.

Legrand, N; Ploss, A; Balling, R; Becker, P D; Borsotti, C; Brezillon, N; Debarry, J; De Jong, Y; Deng, H; Di Santo, J P; Eisenbarth, S; Eynon, E; Flavell, R A; Guzman, C A; Huntington, N D; Kremsdorf, D; Manns, M P; Manz, M G; Mention, J J; Ott, M; Rathinam, C; Rice, C M; Rongvaux, A; Stevens, S; Spits, H; Strick-Marchand, H; Takizawa, H; van Lent, A U; Wang, C; Weijer, K; Willinger, T; Ziegler, P (2009). Humanized mice for modeling human infectious disease: challenges, progress, and outlook. Cell Host & Microbe, 6(1):5-9.

Kelly, B J; Fraefel, C; Cunningham, A L; Diefenbach, R J (2009). Functional roles of the tegument proteins of herpes simplex virus type 1. Virus Research, 145(2):173-186.

Rittirsch, D; Flierl, M A; Day, D E; Nadeau, B A; Zetoune, F S; Sarma, J V; Werner, C M; Wanner, G A; Simmen, H P; Huber-Lang, M S; Ward, P A (2009). Cross-Talk between TLR4 and FcγReceptorIII (CD16) pathways. PLoS Pathogens, 5(6):e1000464.

Tester, S; Juillerat, V; Doherr, M G; Haase, B; Polak, M; Ehrensperger, F; Leeb, T; Zurbriggen, A; Seuberlich, T (2009). Biochemical typing of pathological prion protein in aging cattle with BSE. Virology Journal, 6:64.

Sebastian, S; Grütter, C; de Castillia, C S; Pertel, T; Olivari, S; Grütter, M G; Luban, J (2009). An invariant surface patch on the TRIM5alpha PRYSPRY domain is required for retroviral restriction but dispensable for capsid binding. Journal of Virology, 83(7):3365-3373.

Magnus, C; Rusert, P; Bonhoeffer, S; Trkola, A; Regoes, R R (2009). Estimating the stoichiometry of HIV entry. Journal of Virology, 83(3):1523-1531.

Schlagenhauf, Patricia; Petersen, Eskild (2009). Antimalaria drug resistance: the mono–combi–counterfeit triangle. Expert Review of Anti-infective Therapy, 7(9):1039-1042.

Hessell, A J; Rakasz, E G; Poignard, P; Hangartner, L; Landucci, G; Forthal, D N; Koff, W C; Watkins, D I; Burton, D R (2009). Broadly neutralizing human anti-HIV antibody 2G12 is effective in protection against mucosal SHIV challenge even at low serum neutralizing titers. PLoS Pathogens, 5(5):e1000433.

Alazard-Dany, N; Nicolas, A; Ploquin, A; Strasser, R; Greco, A; Epstein, A L; Fraefel, C; Salvetti, A (2009). Definition of herpes simplex virus type 1 helper activities for adeno-associated virus early replication events. PLoS Pathogens, 5(3):e1000340.

Wild, P; Senn, C; Manera, C L; Sutter, E; Schraner, E M; Tobler, K; Ackermann, M; Ziegler, U; Lucas, M S; Kaech, A (2009). Exploring the nuclear envelope of herpes simplex virus 1-infected cells by high-resolution microscopy. Journal of Virology, 83(1):408-419.

Qi, W; Käser, M; Röltgen, K; Yeboah-Manu, D; Pluschke, G (2009). Genomic diversity and evolution of Mycobacterium ulcerans revealed by next-generation sequencing. PLoS Pathogens, 5(9):e1000580.

Khanna, N; Wolbers, M; Mueller, N J; Garzoni, C; Du Pasquier, R A; Fux, C A; Vernazza, P; Bernasconi, E; Viscidi, R; Battegay, M; Hirsch, H H (2009). JC virus-specific immune responses in human immunodeficiency virus type 1 patients with progressive multifocal leukoencephalopathy. Journal of Virology, 83(9):4404-4411.

Yukl, S; Pillai, S; Li, P; Chang, K; Pasutti, W; Ahlgren, C; Havlir, D; Strain, M; Günthard, H; Richman, D; Rice, A P; Daar, Eric; Little, S; Wong, J K (2009). Latently-infected CD4+ T cells are enriched for HIV-1 Tat variants with impaired transactivation activity. Virology, 387(1):98-108.

Prasad, L; Spicher, V M; Negro, F; Rickenbach, M; Zwahlen, M (2009). Little evidence that hepatitis C virus leads to a higher risk of mortality in the absence of cirrhosis and excess alcohol intake: the Swiss Hepatitis C Cohort Study. Journal of Viral Hepatitis, 16(9):644-649.

Van Damme, P; von Sonnenburg, F; Hatz, C; Hoet, B; Lefevre, I; Leyssen, M (2009). Long-term immunogenicity of preservative-free hepatitis B vaccine formulations in adults. Journal of