Navigation auf zora.uzh.ch
Navigation auf zora.uzh.ch
Lagos, Tomás; Choi, Junyeong; Segundo, Brittany; Gan, Jianbang; Ntaimo, Lewis; Prokopyev, Oleg A (2025). Bilevel optimization approach for fuel treatment planning. European Journal of Operational Research, 320(1):205-218.
Sachs, David; Jakob, Raphael; Restivo, Gaetana; Hafner, Jürg; Lindenblatt, Nicole; Ehret, Alexander E; Mazza, Edoardo (2024). A quadriphasic mechanical model of the human dermis. Biomechanics and Modeling in Mechanobiology, 23(4):1121-1136.
Hanus, Sarah; Schuster, Lilian; Burek, Peter; Maussion, Fabien; Wada, Yoshihide; Viviroli, Daniel (2024). Coupling a large-scale glacier and hydrological model (OGGM v1.5.3 and CWatM V1.08) – towards an improved representation of mountain water resources in global assessments. Geoscientific Model Development, 17(13):5123-5144.
Furrer, Reinhard; Hediger, Michael (2024). On the orthogonality of zero-mean Gaussian measures: Sufficiently dense sampling. Stochastic Processes and their Applications, 173:104356.
Wu, Wenyuan; Heierli, Jasmin; Meisterhans, Max; Moser, Adrian; Färber, Andri; Dolata, Mateusz; Gavagnin, Elena; de Spindler, Alexandre; Schwabe, Gerhard (2024). PROMISE: A Framework for Model-Driven Stateful Prompt Orchestration. In: Islam, Shareeful; Sturm, Arnon. Intelligent Information Systems. Cham: Springer, 157-165.
Abgrall, Remi; Farhat, Charbel; Pironneau, Olivier (2024). A few words about Roland Glowinski. Journal of Computational Physics, 505:112919.
Bell, David R; Ledoit, Olivier; Wolf, Michael (2024). A novel estimator of Earth’s curvature (allowing for inference as well). Annals of Applied Statistics, 18(1):585-599.
Ketkov, Sergey S (2024). A study of distributionally robust mixed-integer programming with Wasserstein metric: on the value of incomplete data. European Journal of Operational Research, 313(2):602-615.
Hasl, Andrea; Voelkle, Manuel; Driver, Charles; Kretschmann, Julia; Brunner, Martin (2024). Leveraging observation timing variability to understand intervention effects in panel studies: an empirical illustration and simulation study. Structural Equation Modeling, 31(1):48-63.
Serafino, Matteo; Zhou, Zhenkun; Andrade, José S; Bovet, Alexandre; Makse, Hernán A (2024). Suspended accounts align with the Internet Research Agency misinformation campaign to influence the 2016 US election. EPJ Data Science, 13(1):29.
Elmer, Timon (2023). Computational social science is growing up: why puberty consists of embracing measurement validation, theory development, and open science practices. EPJ Data Science, 12(1):58.
Leippold, Markus; Yang, Hanlin (2023). Mixed-Frequency Predictive Regressions. Journal of Forecasting, 42(8):1955-1972.
Soussi, Wissem; Christopoulou, Maria; Gür, Gürkan; Stiller, Burkhard (2023). MERLINS – Moving Target Defense Enhanced with Deep-RL for NFV In-Depth Security. In: 2023 IEEE Conference on Network Function Virtualization and Software Defined Networks (NFV-SDN), Dresden, Germany, 7 November 2023 - 9 November 2023. Institute of Electrical and Electronics Engineers, 65-71.
Sauter, Stefan (2023). The inf-sup constant for hp-Crouzeix-Raviart triangular elements. Computers & Mathematics with Applications, 149:49-70.
Epp, Robert; Glück, Chaim; Binder, Nadine Felizitas; El Amki, Mohamad; Weber, Bruno; Wegener, Susanne; Jenny, Patrick; Schmid, Franca (2023). The role of leptomeningeal collaterals in redistributing blood flow during stroke. PLoS Computational Biology, 19(10):e1011496.
Jiang, Jianfei; Aegerter, Christof M (2023). An integrated vertex model of the mesoderm invagination during the embryonic development of Drosophila. Journal of Theoretical Biology, 572:111581.
Rocchini, Duccio; Nowosad, Jakub; D’Introno, Rossella; Chieffallo, Ludovico; Bacaro, Giovanni; Gatti, Roberto Cazzolla; Foody, Giles M; Furrer, Reinhard; Gábor, Lukáš; Malavasi, Marco; Marcantonio, Matteo; Marchetto, Elisa; Moudrý, Vítězslav; Ricotta, Carlo; Šímová, Petra; Torresani, Michele; Thouverai, Elisa (2023). Scientific maps should reach everyone: The cblindplot R package to let colour blind people visualise spatial patterns. Ecological Informatics, 76:102045.
Steiner, Carina; Studer-Joho, Dieter; Lanthemann, Corinne; Büchler, Andrin; Leemann, Adrian (2023). Sociodemographic and Attitudinal Effects on Dialect Speakers’ Articulation of the Standard Language: Evidence from German-Speaking Switzerland. In: INTERSPEECH 2023, Dublin, Ireland, 20 August 2023 - 24 August 2023. ISCA - International Speech Communication Association, 3542-3546.
Zebe, Franka (2023). Increasing aspiration of word-medial fortis plosives in Swiss Standard German. In: INTERSPEECH 2023, Dublin, Ireland, 20 August 2023 - 24 August 2023. ISCA - International Speech Communication Association, 1828-1832.
Gontier, Camille; Surace, Simone Carlo; Delvendahl, Igor; Müller, Martin; Pfister, Jean-Pascal (2023). Efficient sampling-based Bayesian Active Learning for synaptic characterization. PLoS Computational Biology, 19(8):e1011342.
Ahn, Emily P; Levow, Gina-Anne; Wright, Richard A; Chodroff, Eleanor (2023). An Outlier Analysis of Vowel Formants from a Corpus Phonetics Pipeline. In: INTERSPEECH 2023, Dublin, Ireland, 20 August 2023 - 24 August 2023, ISCA - International Speech Communication Association.
Nassajian Mojarrad, Fatemeh; Han Veiga, Maria; Hesthaven, Jan S; Öffner, Philipp (2023). A new variable shape parameter strategy for RBF approximation using neural networks. Computers & Mathematics with Applications, 143:151-168.
Klatte, Diethard (2023). On calmness of the optimal value function. Applied set-valued analysis and optimization, 5(2):253-264.
Laumer, Simon; Barz, Christiane (2023). Reductions of non-separable approximate linear programs for network revenue management. European Journal of Operational Research, 309(1):252-270.
De Sterck, Hans; Shu, Chi-Wang; Abgrall, Remi (2023). Enhancing reproducibility of research papers in SISC, JSC and JCP. Journal of Computational Physics, 484(C):112088.
Adde, Antoine; Rey, Pierre-Louis; Fopp, Fabian; Petitpierre, Blaise; Schweiger, Anna K; Broennimann, Olivier; Lehmann, Anthony; Zimmermann, Niklaus E; Altermatt, Florian; Pellissier, Loïc; Guisan, Antoine (2023). Too many candidates: Embedded covariate selection procedure for species distribution modelling with the covsel R package. Ecological Informatics, 75:102080.
Hammarén, Milka Marjut; Luukinen, Hanna; Sillanpää, Alina; Remans, Kim; Lapouge, Karine; Custódio, Tânia; Löw, Christian; Myllymäki, Henna; Montonen, Toni; Seeger, Markus; Robertson, Joseph; Nyman, Tuula A; Savijoki, Kirsi; Parikka, Mataleena (2023). In vitro and ex vivo proteomics of Mycobacterium marinum biofilms and the development of biofilm-binding synthetic nanobodies. mSystems, 8(3):e0107322.
Abreu, Zita; Lieb, Julia; Rosenthal, Joachim (2023). Binary convolutional codes with optimal column distances. In: 2023 IEEE International Symposium on Information Theory (ISIT), Taipei, Taiwan, 25 June 2023 - 30 June 2023. Institute of Electrical and Electronics Engineers, 1271-1276.
Tiberi, Simone; Crowell, Helena L; Samartsidis, Pantelis; Weber, Lukas M; Robinson, Mark D (2023). distinct: A novel approach to differential distribution analyses. Annals of Applied Statistics, 17(2):1681-1700.
Han, Chao; English, Gwendolyn; Saal, Hannes P; Indiveri, Giacomo; Gilra, Aditya; von der Behrens, Wolfger; Vasilaki, Eleni (2023). Modelling novelty detection in the thalamocortical loop. PLoS Computational Biology, 19(5):e1009616.
Figueredo Franco, Muriel; Zambenedetti Granville, Lisandro; Stiller, Burkhard (2023). CyberTEA: a Technical and Economic Approach for Cybersecurity Planning and Investment. In: NOMS 2023-2023 IEEE/IFIP Network Operations and Management Symposium, Miami, FL, USA, 8 May 2023 - 12 May 2023. Institute of Electrical and Electronics Engineers, 10154307.
Soussi, Wissem; Christopoulou, Maria; Xilouris, George; de Oca, Edgardo Montes; Lefebvre, Vincent; Gür, Gürkan; Stiller, Burkhard (2023). Demo: Closed-Loop Security Orchestration in the Telco Cloud for Moving Target Defense. In: NOMS 2023-2023 IEEE/IFIP Network Operations and Management Symposium, Miami, FL, USA, 8 May 2023 - 12 May 2023. Institute of Electrical and Electronics Engineers, 10154420.
Celdrán, Alberto Huertas; von der Assen, Jan; Moser, Konstantin; Sánchez Sánchez, Pedro M; Bovet, Gérôme; Martínez Pérez, Gregorio; Stiller, Burkhard (2023). Early Detection of Cryptojacker Malicious Behaviors on IoT Crowdsensing Devices. In: NOMS 2023-2023 IEEE/IFIP Network Operations and Management Symposium, Miami, FL, USA, 8 May 2023 - 12 May 2023. Institute of Electrical and Electronics Engineers, 10154392.
Rodrigues, Bruno; Scheid, Eder J; Willems, Julius; Stiller, Burkhard (2023). Real-time Medical Devices Inventory Tracking – a Hands-on Experience. In: NOMS 2023-2023 IEEE/IFIP Network Operations and Management Symposium, Miami, FL, USA, 8 May 2023 - 12 May 2023. Institute of Electrical and Electronics Engineers, 10154401.
Von der Assen, Jan; Celdran, Alberto Huertas; Zermin, Adrian; Mogicato, Raffael; Bovet, Gérôme; Stiller, Burkhard (2023). SecBox: A Lightweight Container-based Sandbox for Dynamic Malware Analysis. In: NOMS 2023-2023 IEEE/IFIP Network Operations and Management Symposium, Miami, FL, USA, 8 May 2023 - 12 May 2023. Institute of Electrical and Electronics Engineers, 10154293.
Soussi, Wissem; Christopoulou, Maria; Anagnostopoulos, Themis; Gür, Gürkan; Stiller, Burkhard (2023). TopoFuzzer - A Network Topology Fuzzer for Moving Target Defense in the Telco Cloud. In: NOMS 2023-2023 IEEE/IFIP Network Operations and Management Symposium, Miami, FL, USA, 8 May 2023 - 12 May 2023. Institute of Electrical and Electronics Engineers, 10154367.
Stawarczyk, Bogna; Roos, Malgorzata (2023). Establishing effective cross-disciplinary collaboration: Combining simple rules for reproducible computational research, a good data management plan, and good research practice. PLoS Computational Biology, 19(4):e1011052.
Petrella, M; Abgrall, Remi; Mishra, S (2023). On the discrete equation model for compressible multiphase fluid flows. Journal of Computational Physics, 478:111974.
Yang, Hairuo (2023). On the law of terminal value of additive martingales in a remarkable branching stable process. Stochastic Processes and their Applications, 158:361-376.
Abgrall, Remi; Barsukow, Wasilij (2023). Extensions of Active Flux to arbitrary order of accuracy. ESAIM Mathematical Modelling and Numerical Analysis, 57(2):991-1027.
Koch, Tobias; Voelkle, Manuel C; Driver, Charles C (2023). Analyzing longitudinal multirater data with individually varying time intervals. Structural Equation Modeling, 30(1):86-104.
Abgrall, Remi; Rai, Pratik; Renac, Florent (2023). A discontinuous Galerkin spectral element method for a nonconservative compressible multicomponent flow model. Journal of Computational Physics, 472:111693.
Abgrall, Remi; Lukáčova-Medvid’ová, Mária; Öffner, Philipp (2023). On the convergence of residual distribution schemes for the compressible Euler equations via dissipative weak solutions. Mathematical Models and Methods in Applied Sciences, 33(01):139-173.
Hartmann, Maximilian C; Schott, Moritz; Dsouza, Alishiba; Metz, Yannick; Volpi, Michele; Purves, Ross S (2022). A text and image analysis workflow using citizen science data to extract relevant social media records: Combining red kite observations from Flickr, eBird and iNaturalist. Ecological Informatics, 71:101782.
Jayakumar, Priyanikha; Figueiredo, Alexandre R T; Kümmerli, Rolf (2022). Evolution of Quorum Sensing in Pseudomonas aeruginosa Can Occur via Loss of Function and Regulon Modulation. mSystems, 7(5):e0035422.
Bulzu, Paul-Adrian; Kavagutti, Vinicius S; Andrei, Adrian-Stefan; Ghai, Rohit (2022). The Evolutionary Kaleidoscope of Rhodopsins. mSystems, 7(5):e0040522.
Abgrall, Rémi; Le Mélédo, Elise; Öffner, Philipp; Torlo, Davide (2022). Relaxation deferred correction methods and their applications to residual distribution schemes. SMAI journal of computational mathematics, 8:125-160.
Chernyak, Bronya Roni; Ben Simon, Talia; Segal, Yael; Steffman, Jeremy; Chodroff, Eleanor; Cole, Jennifer; Keshet, Joseph (2022). DeepFry: Identifying Vocal Fry Using Deep Neural Networks. In: Interspeech 2022, Incheon, Korea, 18 September 2022 - 22 September 2022, 3578-3582.
Bradshaw, Leah; Chodroff, Eleanor; Jäger, Lena; Dellwo, Volker (2022). Fundamental Frequency Variability over Time in Telephone Interactions. In: Interspeech 2022, Incheon, Korea, 18 September 2022 - 22 September 2022.
De Nard, Gianluca; Hediger, Simon; Leippold, Markus (2022). Subsampled Factor Models for Asset Pricing: The Rise of Vasa. Journal of Forecasting, 41(6):1217-1247.
Kerstjens, Stan; Michel, Gabriela; Douglas, Rodney J (2022). Constructive connectomics: How neuronal axons get from here to there using gene-expression maps derived from their family trees. PLoS Computational Biology, 18(8):e1010382.
Batzilla, Alina; Lu, Junyan; Kivioja, Jarno; Putzker, Kerstin; Lewis, Joe; Zenz, Thorsten; Huber, Wolfgang (2022). Inferring tumor-specific cancer dependencies through integrating ex vivo drug response assays and drug-protein profiling. PLoS Computational Biology, 18(8):e1010438.
Bertolini, Anne; Prummer, Michael; Tuncel, M A; Menzel, Ulrike; Rosano-González, María Lourdes; Kuipers, Jack; Stekhoven, Daniel Johannes; Tumor Profiler consortium; Beerenwinkel, Niko; Singer, Franziska (2022). scAmpi—A versatile pipeline for single-cell RNA-seq analysis from basics to clinics. PLoS Computational Biology, 18(6):e1010097.
Moura, Rita; Borges, Margarida; Oliveira, Dulce; Parente, Marco; Kimmich, Nina; Mascarenhas, Teresa; Natal, Renato (2022). A biomechanical study of the birth position: a natural struggle between mother and fetus. Biomechanics and Modeling in Mechanobiology, 21(3):937-951.
Held, Leonhard; Micheloud, Charlotte; Pawel, Samuel (2022). The assessment of replication success based on relative effect size. Annals of Applied Statistics, 16(2):706-720.
Schwab, Simon; Janiaud, Perrine; Dayan, Michael; Amrhein, Valentin; Panczak, Radoslaw; Palagi, Patricia M; Hemkens, Lars G; Ramon, Meike; Rothen, Nicolas; Senn, Stephen; Furrer, Eva; Held, Leonhard (2022). Ten simple rules for good research practice. PLoS Computational Biology, 18(6):e1010139.
Lin, Jianfang; Ren, Yupeng; Abgrall, Rémi; Qiu, Jianxian (2022). High order residual distribution conservative finite difference HWENO scheme for steady state problems. Journal of Computational Physics, 457:111045.
Čaušević, Senka; Tackmann, Janko; Sentchilo, Vladimir; von Mering, Christian; van der Meer, Jan Roelof (2022). Reproducible Propagation of Species-Rich Soil Bacterial Communities Suggests Robust Underlying Deterministic Principles of Community Formation. mSystems, 7(2):e0016022.
Munglani, Gautam; Vogler, Hannes; Grossniklaus, Ueli (2022). Fast and flexible processing of large FRET image stacks using the FRET-IBRA toolkit. PLoS Computational Biology, 18(4):1009242.
Cheng, Rongshan; Wang, Huizhi; Dimitriou, Dimitris; Jiang, Ziang; Cheng, Cheng-Kung; Tsai, Tsung-Yuan (2022). Central femoral tunnel placement can reduce stress and strain around bone tunnels and graft more than anteromedial femoral tunnel in anterior cruciate ligament reconstruction. International Journal for Numerical Methods in Biomedical Engineering, 38(5):e3590.
Abgrall, Rémi; Öffner, Philipp; Ranocha, Hendrik (2022). Reinterpretation and extension of entropy correction terms for residual distribution and discontinuous Galerkin schemes: Application to structure preserving discretization. Journal of Computational Physics, 453:110955.
Carstensen, C; Sauter, Stefan (2022). Critical functions and inf-sup stability of Crouzeix-Raviart elements. Computers & Mathematics with Applications, 108:12-23.
Datseris, George; Vahdati, Ali R; DuBois, Timothy C (2022). Agents.jl: a performant and feature-full agent-based modeling software of minimal code complexity. Simulation:003754972110688.
Saikia, Eashan; Läubli, Nino F; Vogler, Hannes; Rüggeberg, Markus; Herrmann, Hans J; Burgert, Ingo; Burri, Jan T; Nelson, Bradley J; Grossniklaus, Ueli; Wittel, Falk K (2021). Correction to: Mechanical factors contributing to the Venus flytrap’s rate-dependent response to stimuli. Biomechanics and Modeling in Mechanobiology, 20(6):2299.
Tsirkin, Stepan S (2021). High performance Wannier interpolation of Berry curvature and related quantities with WannierBerri code. npj Computational Materials, 7(1):33.
Saikia, Eashan; Läubli, Nino F; Vogler, Hannes; Rüggeberg, Markus; Herrmann, Hans J; Burgert, Ingo; Burri, Jan T; Nelson, Bradley J; Grossniklaus, Ueli; Wittel, Falk K (2021). Mechanical factors contributing to the Venus flytrap’s rate-dependent response to stimuli. Biomechanics and Modeling in Mechanobiology, 20(6):2287-2297.
Goers, Roland; Coman Schmid, Diana; Jäggi, Vera F; Paioni, Paolo; Okoniewski, Michal J; Parker, Althea; Bangerter, Beat; Georgakopoulou, Sofia; Sengstag, Thierry; Bielicki, Julia; Tilen, Romy; Vermeul, Swen; Krämer, Stefanie D; Berger, Christoph; Rinn, Bernd; Meyer Zu Schwabedissen, Henriette E (2021). SwissPK$^{cdw}$ - A clinical data warehouse for the optimization of pediatric dosing regimens. CPT: Pharmacometrics & Systems Pharmacology, 10(12):1578-1587.
Abgrall, Remi (2021). Editorial. Journal of Computational Physics, 445:110625.
Gasparini, Lorenzo; Fregnan, Enrico; Braz, Larissa; Baum, Tobias; Bacchelli, Alberto (2021). ChangeViz: Enhancing the GitHub Pull Request Interface with Method Call Information. In: 2021 Working Conference on Software Visualization (VISSOFT), Luxembourg, 27 October 2021 - 28 October 2021. IEEE, 115-119.
Balakrishna, Suraj; Salazar-Vizcaya, Luisa; Schmidt, Axel J; Kachalov, Viacheslav; Kusejko, Katharina; Thurnheer, Maria Christine; Roth, Jan A; Nicca, Dunja; Cavassini, Matthias; Battegay, Manuel; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F; Rauch, Andri; Kouyos, Roger D; Swiss HIV Cohort Study (2021). Assessing the drivers of syphilis among men who have sex with men in Switzerland reveals a key impact of screening frequency: A modelling study. PLoS Computational Biology, 17(10):e1009529.
Flores Ramos, Stephany; Brugger, Silvio D; Escapa, Isabel Fernandez; Skeete, Chelsey A; Cotton, Sean L; Eslami, Sara M; Gao, Wei; Bomar, Lindsey; Tran, Tommy H; Jones, Dakota S; Minot, Samuel; Roberts, Richard J; Johnston, Christopher D; Lemon, Katherine P (2021). Genomic Stability and Genetic Defense Systems in Dolosigranulum pigrum, a Candidate Beneficial Bacterium from the Human Microbiome. mSystems, 6(5):e0042521.
Zhou, Zhiyong; Weibel, Robert; Fu, Cheng; Winter, Stephan; Huang, Haosheng (2021). Indoor landmark selection for route communication: the influence of route-givers’ social roles and receivers’ familiarity with the environment. Spatial Cognition & Computation, 21(4):257-289.
Posada-Céspedes, Susana; Van Zyl, Gert; Montazeri, Hesam; Kuipers, Jack; Rhee, Soo-Yon; Kouyos, Roger; Günthard, Huldrych F; Beerenwinkel, Niko (2021). Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C. PLoS Computational Biology, 17(9):e1008363.
Kumar, Ronit; Cheng, Lidong; Xiong, Yunong; Xie, Bin; Abgrall, Rémi; Xiao, Feng (2021). THINC scaling method that bridges VOF and level set schemes. Journal of Computational Physics, 436:110323.
Barsukow, Wasilij (2021). Truly multi-dimensional all-speed schemes for the Euler equations on Cartesian grids. Journal of Computational Physics, 435:110216.
Isenring, Julia; Geirnaert, Annelies; Hall, Alex R; Jans, Christoph; Lacroix, Christophe; Stevens, Marc J A (2021). In Vitro Gut Modeling as a Tool for Adaptive Evolutionary Engineering of Lactiplantibacillus plantarum. mSystems, 6(2):01085-20.
Abgrall, Rémi; Adams, Nikolaus; Chacon, Luis; Xiao, Feng (2021). Preface. Journal of Computational Physics, 430:110137.
Miraki, Mojdeh; Sohrabi, Hormoz; Fatehi, Parviz; Kneubühler, Mathias (2021). Individual tree crown delineation from high-resolution UAV images in broadleaf forest. Ecological Informatics, 61:101207.
Glaubitz, Jan; Le Mélédo, Elise; Öffner, Philipp (2021). Towards stable radial basis function methods for linear advection problems. Computers & Mathematics with Applications, 85:84-97.
Mariani, Manuel S; Palazzi, Maria J; Solé-Ribalta, Albert; Borge-Holthoefer, Javier; Tessone, Claudio J (2021). Absence of a resolution limit in in-block nestedness. Communications in Nonlinear Science and Numerical Simulation, 94:105545.
Frey, Pascal M; Baer, Julian; Bergada-Pijuan, Judith; Lawless, Conor; Bühler, Philipp K; Kouyos, Roger D; Lemon, Katherine P; Zinkernagel, Annelies S; Brugger, Silvio D (2021). Quantifying Variation in Bacterial Reproductive Fitness: a High-Throughput Method. mSystems, 6(1):e01323-20.
Tepekule, Burcu; Hauser, Anthony; Kachalov, Viacheslav N; Andresen, Sara; Scheier, Thomas; Schreiber, Peter W; Günthard, Huldrych F; Kouyos, Roger D (2021). Assessing the potential impact of transmission during prolonged viral shedding on the effect of lockdown relaxation on COVID-19. PLoS Computational Biology, 17:e1008609.
Kachalov, Viacheslav N; Nguyen, Huyen; Balakrishna, Suraj; Salazar-Vizcaya, Luisa; Sommerstein, Rami; Kuster, Stefan P; Hauser, Anthony; Abel Zur Wiesch, Pia; Klein, Eili; Kouyos, Roger D (2021). Identifying the drivers of multidrug-resistant Klebsiella pneumoniae at a European level. PLoS Computational Biology, 17:e1008446.
Schönenberger, Lukas; Schmid, Alexander; Tanase, Radu; Beck, Mathias; Schwaninger, Markus (2021). Structural analysis of system dynamics models. Simulation Modelling Practice and Theory, 110:102333.
Moura, Rita; Borges, Margarida; Vila Pouca, Maria C P; Oliveira, Dulce A; Parente, Marco P L; Kimmich, Nina; Mascarenhas, Teresa; Natal, Renato M (2021). A numerical study on fetal head molding during labor. International Journal for Numerical Methods in Biomedical Engineering, 37(1):e3411.
Abgrall, Rémi; Le Mélédo, Élise; Öffner, Philipp (2021). General polytopal H(div)-conformal finite elements and their discretisation spaces. Mathematical Modelling and Numerical Analysis, 55:S677-S704.
Mujakić, Izabela; Andrei, Adrian-Stefan; Shabarova, Tanja; Fecskeová, Lívia Kolesár; Salcher, Michaela M; Piwosz, Kasia; Ghai, Rohit; Koblížek, Michal (2021). Common Presence of Phototrophic Gemmatimonadota in Temperate Freshwater Lakes. mSystems, 6(2):01241-20.
Grossmann, Nicolas; Bernard, Jürgen; Sedlmair, Michael; Waldner, Manuela (2021). Does the Layout Really Matter? A Study on Visual Model Accuracy Estimation. In: IEEE Visualization Conference - Short Papers, virtual, 1 January 2021. IEEE, 61-65.
Grossmann, Nicolas; Bernard, Jürgen; Sedlmair, Michael; Waldner, Manuela (2021). Does the Layout Really Matter? A Study on Visual Model Accuracy Estimation. In: 2021 IEEE Visualization Conference Short Papers (VIS), New Orleans, 26 October 2021. IEEE Xplore, 61-65.
Pajarola, R; Suter, S K; Ballester-Ripoll, Rafael; Yang, Haiyan (2021). Tensor Approximation for Multidimensional and Multivariate Data. In: Özarslan, Evren; Schultz, Thomas; Zhang, Eugene; Fuster, Andrea. Anisotropy Across Fields and Scales. Cham: Springer, 73-98.
Trück, Johannes; van der Burg, Mirjam (2020). Development of adaptive immune cells and receptor repertoires from infancy to adulthood. Current Opinion in Systems Biology, 24:51-55.
San Roman, Magdalena; Wagner, Andreas (2020). Acetate and glycerol are not uniquely suited for the evolution of cross-feeding in E. coli. PLoS Computational Biology, 16(11):e1008433.
Defina, Rebecca; Torres, Catalina; Stoakes, Hywel (2020). Scaling Processes of Clause Chains in Pitjantjatjara. In: Interspeech 2020, Shanghai, China, 25 October 2020 - 29 October 2020. ISCA, 1868-1872.
Schmutzer, Michael; Wagner, Andreas (2020). Gene expression noise can promote the fixation of beneficial mutations in fluctuating environments. PLoS Computational Biology, 16(10):e1007727.
Bouvel, Mathilde; Gambette, Philippe; Mansouri, Marefatollah (2020). Counting phylogenetic networks of level 1 and 2. Journal of Mathematical Biology, 81:1357-1395.
Henco, Lara; Diaconescu, Andreea O; Lahnakoski, Juha M; Brandi, Marie-Luise; Hörmann, Sophia; Hennings, Johannes; Hasan, Alkomiet; Papazova, Irina; Strube, Wolfgang; Bolis, Dimitris; Schilbach, Leonhard; Mathys, Christoph (2020). Aberrant computational mechanisms of social learning and decision-making in schizophrenia and borderline personality disorder. PLoS Computational Biology, 16(9):e1008162.
Hu, Yuhuang; Binas, Jonathan; Neil, Daniel; Liu, Shih-Chii; Delbruck, Tobi (2020). DDD20 End-to-End Event Camera Driving Dataset: Fusing Frames and Events with Deep Learning for Improved Steering Prediction. In: 2020 IEEE 23rd International Conference on Intelligent Transportation Systems (ITSC), Rhodes, 20 September 2020 - 23 September 2020, IEEE.
Pokropek, Artur; Schmidt, Peter; Davidov, Eldad (2020). Choosing priors in bayesian measurement invariance modeling: A Monte Carlo Simulation study. Structural Equation Modeling, 27(5):750-764.
Manica, Matteo; Kim, Hyunjae Ryan; Mathis, Roland; Chouvarine, Philippe; Rutishauser, Dorothea; De Vargas Roditi, Laura; Szalai, Bence; Wagner, Ulrich; Oehl, Kathrin; Saba, Karim; Pati, Arati; Saez-Rodriguez, Julio; Roy, Angshumoy; Parsons, Donald W; Wild, Peter J; Martínez, María Rodríguez; Sumazin, Pavel (2020). Inferring clonal composition from multiple tumor biopsies. NPJ systems biology and applications, 6(1):27.
Schweizer, Gabriel; Wagner, Andreas (2020). Genotype networks of 80 quantitative Arabidopsis thaliana phenotypes reveal phenotypic evolvability despite pervasive epistasis. PLoS Computational Biology, 16(8):e1008082.
Weyland, Mathias S; Thumser-Henner, Pauline; Nytko, Katarzyna J; Rohrer Bley, Carla; Ulzega, Simone; Petri-Fink, Alke; Lattuada, Marco; Füchslin, Rudolf M; Scheidegger, Stephan (2020). Holistic view on cell survival and DNA damage: how model-based data analysis supports exploration of dynamics in Biological systems. Computational and Mathematical Methods in Medicine, 2020:5972594.
Alfarano, Gianira Nicoletta; Lieb, Julia; Rosenthal, Joachim (2020). Construction of rate (n — 1 )/n non-binary LDPC convolutional codes via difference triangle sets. In: 2020 IEEE International Symposium on Information Theory (ISIT), Los Angeles, CA, USA, 21 June 2020 - 26 June 2020, IEEE.
Abgrall, Rémi (2020). Letter from the Editor: About “A linear, second-order, energy stable, fully adaptive finite-element method for phase-field modelling of wetting phenomena” by B. Aymard, U. Vaes, M. Pradras and S. Kalliadasis [J. Comput. Phys. X 2 (2019) 100010]. Journal of Computational Physics, 410:109494.
Tsionas, Mike G; Mamatzakis, Emmanuel; Ongena, Steven (2020). Does risk aversion affect bank output loss? The case of the Eurozone. European Journal of Operational Research, 282(3):1127-1145.
Fagerholm, Erik D; Foulkes, W M C; Gallero-Salas, Yasir; Helmchen, Fritjof; Friston, Karl J; Moran, Rosalyn J; Leech, Robert (2020). Conservation laws by virtue of scale symmetries in neural systems. PLoS Computational Biology, 16(5):e1007865.
Numminen, Elina; Laine, Anna-Liisa (2020). The spread of a wild plant pathogen is driven by the road network. PLoS Computational Biology, 16(3):e1007703.
Birrell, Paul J; Wernisch, Lorenz; Tom, Brian D M; Held, Leonhard; Roberts, Gareth O; Pebody, Richard G; De Angelis, Daniela (2020). Efficient real-time monitoring of an emerging influenza pandemic: How feasible? Annals of Applied Statistics, 14(1):74-93.
Kovaltsuk, Aleksandr; Raybould, Matthew I J; Wong, Wing Ki; Marks, Claire; Kelm, Sebastian; Snowden, James; Trück, Johannes; Deane, Charlotte M (2020). Structural diversity of B-cell receptor repertoires along the B-cell differentiation axis in humans and mice. PLoS Computational Biology, 16(2):e1007636.
Lang, Brian M; Kuipers, Jack; Misselwitz, Benjamin; Beerenwinkel, Niko (2020). Predicting colorectal cancer risk from adenoma detection via a two-type branching process model. PLoS Computational Biology, 16(2):e1007552.
O'Connor, Brian; Bojinski, Stephan; Röösli, Claudia; Schaepman, Michael E (2020). Monitoring global changes in biodiversity and climate essential as ecological crisis intensifies. Ecological Informatics, 55:101033.
Lustenberger, Michael; Spychiger, Florian; Malesevic, Sasa (2020). Towards a better understanding of the value of blockchains in supply chain management. In: Spychiger, Florian. Digitalisierung in der Praxis. Switzerland: Springer, 101-112.
Koch, Caleb M; Moise, Izabela; Helbing, Dirk; Donnay, Karsten (2020). Public debate in the media matters: evidence from the European refugee crisis. EPJ Data Science, 9(12):1-27.
Buoso, Stefano; Manzoni, Andrea; Alkadhi, Hatem; Plass, André; Quarteroni, Alfio; Kurtcuoglu, Vartan (2019). Reduced-order modeling of blood flow for noninvasive functional evaluation of coronary artery disease. Biomechanics and Modeling in Mechanobiology, 18(6):1867-1881.
Grosskurth, Elmar D; Bach, Dominik R; Economides, Marcos; Huys, Quentin J M; Holper, Lisa (2019). No substantial change in the balance between model-free and model-based control via training on the two-step task. PLoS Computational Biology, 15(11):e1007443.
Cieslewski, Titus; Derpanis, Konstantinos G; Scaramuzza, Davide (2019). SIPs: Succinct Interest Points from Unsupervised Inlierness Probability Learning. In: 2019 International Conference on 3D Vision (3DV), Québec City, QC, Canada, 16 October 2019 - 19 October 2019. IEEE, 604-613.
Ibrahim, Omnia; Skantze, Gabriel; Stoll, Sabine; Dellwo, Volker (2019). Fundamental Frequency Accommodation in Multi-Party Human-Robot Game Interactions: The Effect of Winning or Losing. In: Interspeech 2019, Graz, Austria, 15 September 2019 - 19 September 2019, INTERSPEECH.
Mayer, Sabrina Jasmin; Rathmann, Justus M K (2019). Changing Dynamics in an Emerging Field : Tracking authorship developments in the journal ‘Political Psychology’ 1985-2015. In: 17th International conference on Scientometrics & Infometrics ISSI 2019, Rome, Italy, 2 September 2019 - 5 September 2019. Editioni Efesto, 2505-2506.
Rathmann, Justus M K; Rauhut, Heiko (2019). Teams prevent misconduct: A study of retracted articles from the Web of Science. In: 17th International conference on Scientometrics & Infometrics ISSI 2019, Rome, Italy, 2 September 2019 - 5 September 2019. Editioni Efesto, 1032-1037.
Pokropek, Artur; Davidov, Eldad; Schmidt, Peter (2019). A Monte Carlo Simulation Study to Assess The Appropriateness of Traditional and Newer Approaches to Test for Measurement Invariance. Structural Equation Modeling, 26(5):724-744.
Kelly, Finnian; Fröhlich, Andrea; Dellwo, Volker; Forth, Oscar; Kent, Samuel; Alexander, Anil (2019). Evaluation of VOCALISE under conditions reflecting those of a real forensic voice comparison case (forensic_eval_01). Speech Communication, 112:30-36.
Schmid, Franca; Barrett, Matthew J P; Obrist, Dominik; Weber, Bruno; Jenny, Patrick (2019). Red blood cells stabilize flow in brain microvascular networks. PLoS Computational Biology, 15(8):e1007231.
Burovikhin, D; Sackmann, Benjamin; Schär, Merlin; Sim, J H; Eberhard, P; Lauxmann, M (2019). Investigation of Inhomogeneous Stiffness and Damping Characteristics of the Human Stapedial Annular Ligament. In: European Congress on Computational Methods in Applied Sciences and Engineering, Duisburg, 26 August 2019. Springer, 18-25.
Sackmann, Benjamin; Warnholtz, Birthe; Sim, Jae Hoon; Burovikhin, Dmitrii; Dalhoff, Ernst; Eberhard, Peter; Lauxmann, Michael (2019). Investigation of Tympanic Membrane Influences on Middle-Ear Impedance Measurements and Simulations. In: European Congress on Computational Methods in Applied Sciences and Engineering, Duisburg, 26 August 2019. Springer, 3-10.
Koppe, Georgia; Toutounji, Hazem; Kirsch, Peter; Lis, Stefanie; Durstewitz, Daniel (2019). Identifying nonlinear dynamical systems via generative recurrent neural networks with applications to fMRI. PLoS Computational Biology, 15(8):e1007263.
Abgrall, Rémi (2019). Editorial. Journal of Computational Physics, 390:iii-iv.
Libby, Eric; Hébert-Dufresne, Laurent; Hosseini, Sayed-Rzgar; Wagner, Andreas (2019). Syntrophy emerges spontaneously in complex metabolic systems. PLoS Computational Biology, 15(7):e1007169.
Kelava, Augustin; Brandt, Holger (2019). A Nonlinear Dynamic Latent Class Structural Equation Model. Structural Equation Modeling, 26(4):509-528.
Credé, Sascha; Thrash, Tyler; Hölscher, Christoph; Fabrikant, Sara I (2019). The acquisition of survey knowledge for local and global landmark configurations under time pressure. Spatial Cognition & Computation, 19(3):190-219.
Abgrall, Rémi; Bacigaluppi, Paola; Tokareva, Svetlana (2019). High-order residual distribution scheme for the time-dependent Euler equations of fluid dynamics. Computers & Mathematics with Applications, 78(2):274-297.
De Rita, Nicolo; Aimar, Alessandro; Delbruck, Tobi (2019). CNN-based Object Detection on Low Precision Hardware: Racing Car Case Study. In: 2019 IEEE Intelligent Vehicles Symposium (IV), Paris, 9 June 2019 - 12 June 2019, IEEE.
Noor, Elad; Cherkaoui, Sarah; Sauer, Uwe (2019). Biological insights through omics data integration. Current Opinion in Systems Biology, 15:39-47.
Hauser, Anthony; Kusejko, Katharina; Johnson, Leigh F; Wandeler, Gilles; Riou, Julien; Goldstein, Fardo; Egger, Matthias; Kouyos, Roger D (2019). Bridging the gap between HIV epidemiology and antiretroviral resistance evolution: Modelling the spread of resistance in South Africa. PLoS Computational Biology, 15(6):e1007083.
Pham, Van Thanh; Chassard, Christophe; Rifa, Etienne; Braegger, Christian; Geirnaert, Annelies; Rocha Martin, Vanesa Natalin; Lacroix, Christophe (2019). Lactate Metabolism Is Strongly Modulated by Fecal Inoculum, pH, and Retention Time in PolyFermS Continuous Colonic Fermentation Models Mimicking Young Infant Proximal Colon. mSystems, 4(4):e00264.
Solinas, Sergio M G; Edelmann, Elke; Leßmann, Volkmar; Migliore, Michele (2019). A kinetic model for Brain-Derived Neurotrophic Factor mediated spike timing-dependent LTP. PLoS Computational Biology, 15(4):e1006975.
Bouckaert, Remco; Vaughan, Timothy G; Barido-Sottani, Joëlle; Duchêne, Sebastián; Fourment, Mathieu; Gavryushkina, Alexandra; Heled, Joseph; Jones, Graham; Kühnert, Denise; De Maio, Nicola; Matschiner, Michael; Mendes, Fábio K; Müller, Nicola F; Ogilvie, Huw A; du Plessis, Louis; Popinga, Alex; Rambaut, Andrew; Rasmussen, David; Siveroni, Igor; Suchard, Marc A; Wu, Chieh-Hsi; Xie, Dong; Zhang, Chi; Stadler, Tanja; Drummond, Alexei J (2019). BEAST 2.5: An Advanced Software Platform for Bayesian Evolutionary Analysis. PLoS Computational Biology, 15(4):e1006650.
Bertoin, Jean (2019). Ergodic aspects of some Ornstein–Uhlenbeck type processes related to Lévy processes. Stochastic Processes and their Applications, 129(4):1443-1454.
Wüest, Dustin; Seyff, Norbert; Glinz, Martin (2019). FlexiSketch: a lightweight sketching and metamodeling approach for end-users. Software and Systems Modeling, 18(2):1513-1541.
Miladinović, Đorđe; Muheim, Christine; Bauer, Stefan; Spinnler, Andrea; Noain, Daniela; Bandarabadi, Mojtaba; Gallusser, Benjamin; Krummenacher, Gabriel; Baumann, Christian; Adamantidis, Antoine; Brown, Steven A; Buhmann, Joachim M (2019). SPINDLE: End-to-end learning from EEG/EMG to extrapolate animal sleep scoring across experimental settings, labs and species. PLoS Computational Biology, 15(4):e1006968.
Zhou, Fang; Lü, Linyuan; Mariani, Manuel (2019). Fast influencers in complex networks. Communications in Nonlinear Science and Numerical Simulation, 74:69-83.
Vinckier, Fabien; Rigoux, Lionel; Kurniawan, Irma T; Hu, Chen; Bourgeois-Gironde, Sacha; Daunizeau, Jean; Pessiglione, Mathias (2019). Sour grapes and sweet victories: How actions shape preferences. PLoS Computational Biology, 15:e1006499.
Meier-Gibbons, Frances; Töteberg-Harms, Marc (2019). Aqueous Humor Dynamics and Its Influence on Glaucoma. In: Giodoboni, Giovanna; Harris, Alon Harris; Sacco, Riccardo. Ocular Fluid Dynamics: Anatomy, Physiology, Imaging Techniques, and Mathematical Modeling. Cham: Springer, 191-213.
Wechsler, Daniel; Bascompte, Jordi (2019). Thresholds in the resilience of modular social networks to invasion by defectors. Journal of Theoretical Biology, 460:56-63.
Mutz, Rüdiger; Daniel, Hans-Dieter (2019). How Should We Measure Individual Researcher`s Performance Capacity Within and Between Universities? A Multilevel Extension of the Bibliometric Quotient (BQ). In: Catalano, G; Daraio, C; Gregori,, M; Moed,, H F; Ruoca, G. Proceedings of the 17th International Conference on Scientometrics & Informetrics ISSI, September 2-5, 2019 Sapienza University Rom, Italy. Rom, Italy: International Society for Scientometrics and Informetrics, 1098-1109.
Braun, S; Neil, D; Anumula, Jithendar; Ceolini, Enea; Liu, S-C (2018). Multi-channel attention for end-to-end speech recognition. In: Interspeech 2018, Hyderabad, India, 2 September 2018 - 6 September 2018. ISCA, 17-21.
Abgrall, Rémi (2018). A general framework to construct schemes satisfying additional conservation relations. Application to entropy conservative and entropy dissipative schemes. Journal of Computational Physics, 372:640-666.
Olveira, Sandro; Stojanovic, Ana; Seeger, Stefan (2018). Systematic parametric investigation on the CVD process of polysiloxane nano- and microstructures. Journal of Nanoparticle Research, 20(11):307.
Burtscher, Michael J; Jordi Ritz, Eva-Maria; Kolbe, Michaela (2018). Differences in talking-to-the-room behaviour between novice and expert teams during simulated paediatric resuscitation: a quasi-experimental study. BMJ Simulation & Technology Enhanced Learning, 4(4):165-170.
Dellwo, Volker; Kathiresan, Thayabaran; Pellegrino, Elisa; He, Lei; Schwab, Sandra; Maurer, Dieter (2018). Influences of fundamental oscillation on speaker identification in vocalic utterances by humans and computers. In: Interspeech 2018, Hyderabad, India, 2 September 2018 - 6 September 2018. ISCA, 3795-3799.
Leemann, Adrian; Schmid, Stephan; Studer-Joho, Dieter; Kolly, Marie-José (2018). Regional variation of /r/ in Swiss German dialects. In: Interspeech 2018, Hyderabad, India, 2 September 2018 - 6 September 2018. ISCA, 2738-2742.
Maurer, Dieter; d'Heureuse, Christian; Suter, Heidy; Dellwo, Volker; Friedrichs, Daniel; Kathiresan, Thayabaran (2018). The Zurich Corpus of Vowel and Voice Quality, Version 1.0. In: Interspeech, Hyderabad, India, 2 September 2018 - 6 September 2018. International Speech Communication Association (ISCA), 1417-1421.
Cliff, Oliver M; Harding, Nathan; Piraveenan, Mahendra; Erten, E Yagmur; Gambhir, Manoj; Prokopenko, Mikhail (2018). Investigating spatiotemporal dynamics and synchrony of influenza epidemics in Australia: An agent-based modelling approach. Elsevier Oceanography Series, 87:412-431.
Barbour, A D; McVinish, R; Pollett, P K (2018). Local approximation of a metapopulation’s equilibrium. Journal of Mathematical Biology, 77(3):765-793.
Katthagen, Teresa; Mathys, Christoph; Deserno, Lorenz; Walter, Henrik; Kathmann, Norbert; Heinz, Andreas; Schlagenhauf, Florian (2018). Modeling subjective relevance in schizophrenia and its relation to aberrant salience. PLoS Computational Biology, 14(8):e1006319.
Tzovara, Athina; Korn, Christoph W; Bach, Dominik R (2018). Human Pavlovian fear conditioning conforms to probabilistic learning. PLoS Computational Biology, 14(8):e1006243.
San Roman, Magdalena; Wagner, Andreas (2018). An enormous potential for niche construction through bacterial cross-feeding in a homogeneous environment. PLoS Computational Biology, 14(7):e1006340.
Quaglino, A; Pezzuto, S; Koutsourelakis, P S; Auricchio, A; Krause, R (2018). Fast uncertainty quantification of activation sequences in patient-specific cardiac electrophysiology meeting clinical time constraints. International Journal for Numerical Methods in Biomedical Engineering, 34(7):e2985.
Radom, Filip; Plückthun, Andreas; Paci, Emanuele (2018). Assessment of ab initio models of protein complexes by molecular dynamics. PLoS Computational Biology, 14(6):e1006182.
Nguyen, Anh Thy H; Rothacher, Yannick; Kunz, Andreas; Brugger, Peter; Lenggenhager, Bigna (2018). Effect of Environment Size on Curvature Redirected Walking Thresholds. In: 2018 IEEE Conference on Virtual Reality and 3D User Interfaces (VR), Reutlingen, 18 March 2018 - 22 March 2018. IEEE, 645-646.
Alegría, Alfredo; Porcu, Emilio; Furrer, Reinhard (2018). Asymmetric matrix-valued covariances for multivariate random fields on spheres. Journal of Statistical Computation and Simulation, 88(10):1850-1862.
Ballester-Ripoll, Rafael; Paredes, Enrique G; Pajarola, R (2018). Tensor Algorithms for Advanced Sensitivity Metrics. SIAM/ASA Journal on Uncertainty Quantification, 6(3):1172-1197.
Scherrer, Luca; Tomko, Martin; Ranacher, Peter; Weibel, Robert (2018). Travelers or locals? Identifying meaningful sub-populations from human movement data in the absence of ground truth. EPJ Data Science:7:19.
Muir, Dylan R; Molina-Luna, Patricia; Roth, Morgane M; Helmchen, Fritjof; Kampa, Björn M (2017). Specific excitatory connectivity for feature integration in mouse primary visual cortex. PLoS Computational Biology, 13(12):e1005888.
Meisser, Luzius (2017). The Code is the Model. International Journal of Microsimulation, 10(3):184-201.
Ochsner, Michael; Hug, Sven E; Daniel, Hans-Dieter (2017). Assessment Criteria for Early Career Researcher's Proposals in the Humanities. In: Proceedings of the 16th International Conference on Scientometrics and Informetrics, ISSI 2017, Wuhan, 16 October 2017 - 20 October 2017, 105-111.
Ashcroft, Peter; Manz, Markus G; Bonhoeffer, Sebastian (2017). Clonal dominance and transplantation dynamics in hematopoietic stem cell compartments. PLoS Computational Biology, 13(10):e1005803.
Kotelnikova, Ekaterina; Kiani, Narsis A; Abad, Elena; Martinez-Lapiscina, Elena H; Andorra, Magi; Zubizarreta, Irati; Pulido-Valdeolivas, Irene; Pertsovskaya, Inna; Alexopoulos, Leonidas G; Olsson, Tomas; Martin, Roland; Paul, Friedemann; Tegnér, Jesper; Garcia-Ojalvo, Jordi; Villoslada, Pablo (2017). Dynamics and heterogeneity of brain damage in multiple sclerosis. PLoS Computational Biology, 13(10):e1005757.
Abgrall, Rémi; Mishra, S (2017). Uncertainty quantification for hyperbolic systems of conservation laws. Handbook of Numerical Analysis, 18:507-544.
Abgrall, Rémi; Congedo, P. M; Geraci, G (2017). Towards a unified multiresolution scheme for treating discontinuities in differential equations with uncertainties. Mathematics and Computers in Simulation, 139:1-22.
Abgrall, Rémi; Koren, Barry (2017). Computational science for energy research. Journal of Computational Physics, 345:A1.
Grigonyte, Gintare; Schneider, Gerold (2017). Measuring Encoding Efficiency in Swedish and English Language Learner Speech Production. In: Interspeech 2017, Stockholm, 19 August 2017 - 24 August 2017. ISCA, 1779-1783.
Zihlmann, Urban (2017). The effects of real and placebo alcohol on deaffrication. In: Interspeech 2017, Stockholm, 19 August 2017 - 24 August 2017, 3882-3886.
Schoenenberger, Lukas; Tanase, Radu (2017). Controlling complex policy problems: A multimethodological approach using system dynamics and network controllability. Journal of Simulation, 12(2):162-170.
Rosenthal, Joachim; Randrianarisoa, Tovohery (2017). A decoding algorithm for twisted Gabidulin codes. In: 2017 IEEE International Symposium on Information Theory (ISIT), Aachen, Germany, 25 June 2017 - 30 June 2017, 2771-2774.
Napp, Diego; Pinto, Raquel; Rosenthal, Joachim; Vettori, Paolo (2017). MRD rank metric convolutional codes. In: IEEE International Symposium on Information Theory (ISIT), Aachen, 25 June 2017 - 30 June 2017, 2766-2770.
Ghazi, Parisa; Glinz, Martin (2017). ImitGraphs: towards faster usability tests of graphical model manipulation techniques. In: 9th International Workshop on Modeling in Software Engineering, Buenos Aires, 21 May 2017 - 22 May 2017. IEEE, 61-67.
Reimann, Olivier; Schumacher, Christian; Vetschera, Rudolf (2017). How well does the OWA operator represent real preferences? European Journal of Operational Research, 258(3):993-1003.
Hauser, Tobias U; Moutoussis, Michael; Iannaccone, Reto; Brem, Silvia; Walitza, Susanne; Drechsler, Renate; Dayan, Peter; Dolan, Raymond J (2017). Increased decision thresholds enhance information gathering performance in juvenile Obsessive-Compulsive Disorder (OCD). PLoS Computational Biology, 13(4):e1005440.
Majdik, András L; Till, Charles; Scaramuzza, Davide (2017). The Zurich urban micro aerial vehicle dataset. IEEE Robotics and Automation Letters, 36(3):269-273.
Gauvrit, Nicolas; Zenil, Hector; Soler-Toscano, Fernando; Delahaye, Jean-Paul; Brugger, Peter (2017). Human behavioral complexity peaks at age 25. PLoS Computational Biology, 13(4):e1005408.
Rasmussen, David A; Kouyos, Roger; Günthard, Huldrych F; Stadler, Tanja (2017). Phylodynamics on local sexual contact networks. PLoS Computational Biology, 13(3):e1005448.
Gorgolewski, Krzysztof J; Alfaro-Almagro, Fidel; Auer, Tibor; Bellec, Pierre; Capotă, Mihai; Chakravarty, M Mallar; Churchill, Nathan W; Cohen, Alexander Li; Craddock, R Cameron; Devenyi, Gabriel A; Eklund, Anders; Esteban, Oscar; Flandin, Guillaume; Ghosh, Satrajit S; Guntupalli, J Swaroop; Jenkinson, Mark; Keshavan, Anisha; Kiar, Gregory; Liem, Franziskus; Raamana, Pradeep Reddy; Raffelt, David; Steele, Christopher J; Quirion, Pierre-Olivier; Smith, Robert E; Strother, Stephen C; Varoquaux, Gaël; Wang, Yida; Yarkoni, Tal; Poldrack, Russell A (2017). BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. PLoS Computational Biology, 13(3):e1005209.
Fortuna, Miguel A; Zaman, Luis; Ofria, Charles; Wagner, Andreas (2017). The genotype-phenotype map of an evolving digital organism. PLoS Computational Biology, 13(2):e1005414.
Abgrall, Rémi (2017). Some Failures of Riemann Solvers. In: Abgrall, Rémi; Shu, Chi-Wang. Handbook of Numerical Methods for Hyperbolic Problems - Applied and Modern Issues. North Holland: Elsevier, 351-360.
Sauter, Stefan A; Schanz, Martin (2017). Convolution quadrature for the wave equation with impedance boundary conditions. Journal of Computational Physics, 334:442-459.
Rigoli, Francesco; Mathys, Christoph; Friston, Karl J; Dolan, Raymond J (2017). A unifying Bayesian account of contextual effects in value-based choice. PLoS Computational Biology, 13(10):e1005769.
Schmid, Franca; Tsai, Philbert S; Kleinfeld, David; Jenny, Patrick; Weber, Bruno (2017). Depth-dependent flow and pressure characteristics in cortical microvascular networks. PLoS Computational Biology, 13(2):e1005392.
Devaine, Marie; Daunizeau, Jean (2017). Learning about and from others' prudence, impatience or laziness: The computational bases of attitude alignment. PLoS Computational Biology, 13(3):e1005422.
Kolly, Marie-José; Boula de Mareüil, Philippe; Leemann, Adrian; Dellwo, Volker (2017). Listeners use temporal information to identify French- and English-accented speech. Speech Communication, 86:121-134.
Castellví, Quim; Sánchez-Velázquez, Patricia; Moll, Xavier; Berjano, Enrique; Andaluz, Anna; Burdío, Fernando; Bijnens, Bart; Ivorra, Antoni (2017). Modeling liver electrical conductivity during hypertonic injection. International Journal for Numerical Methods in Biomedical Engineering, 34(1):e2904.
Aponte, Eduardo A; Schöbi, Dario; Stephan, Klaas E; Heinzle, Jakob (2017). The Stochastic Early Reaction, Inhibition, and late Action (SERIA) model for antisaccades. PLoS Computational Biology, 13(8):e1005692.
Wiedemair, Wolfgang; Tukovic, Zeljko; Jasak, Hrvoje; Poulikakos, Dimos; Kurtcuoglu, Vartan (2017). The breakup of intravascular microbubbles and its impact on the endothelium. Biomechanics and Modeling in Mechanobiology, (16):611-624.
Mueggler, Elias; Rebecq, Henri; Gallego, Guillermo; Delbruck, Tobi; Scaramuzza, Davide (2017). The event-camera dataset and simulator: Event-based data for pose estimation, visual odometry, and SLAM. International Journal of Robotics Research, 36(2):144-155.
Dimitrieva, Slavica; Schlapbach, Ralph; Rehrauer, Hubert (2016). Prognostic value of cross-omics screening for kidney clear cell renal cancer survival. Biology Direct, 11(1):68.
Sandkuhl, Kurt; Fill, Hans-Georg; Hoppenbrouwers, Stijn; Krogstie, John; Leue, Andreas; Matthes, Florian; Opdahl, Andreas L; Schwabe, Gerhard; Uludag, Ömer; Winter, Robert (2016). Enterprise Modelling for the Masses – From Elitist Discipline to Common Practice. In: 9th IFIP WG 8.1 Working Conference on The Practice of Enterprise Modeling, Skövde, Sweden, 8 November 2016 - 10 November 2016, Springer Lecture Notes.
Wälchli, Boris (2016). A proximity based macro stress testing framework. Dependence Modeling, 4(1):251-276.
He, Lei; Dellwo, Volker (2016). A Praat-Based Algorithm to Extract the Amplitude Envelope and Temporal Fine Structure Using the Hilbert Transform. In: INTERSPEECH 2016, San Francisco, 8 September 2016 - 12 September 2016. ISCA, 530-534.
Riday, Cosimo; Bhargava, Saurabh; Hahnloser, Richard H R; Liu, Shih-Chii (2016). Monaural Source Separation Using a Random Forest Classifier. In: Interspeech 2016, San Francisco, CA, USA, 8 September 2016 - 12 September 2016. Proceedings of Interspeech 2016, 3344-3348.
Pettorino, Massimo; Busà, Maria Grazia; Pellegrino, Elisa (2016). Speech Rhythm in Parkinson’s Disease: A Study on Italian. In: Interspeech 2016, San Francisco, 8 September 2016 - 12 September 2016. ISCA, 1958-1961.
Battiston, Stefano; Caldarelli, Guido; D'Errico, Marco; Gurciullo, Stefano (2016). Leveraging the network: a stress-test framework based on DebtRank. Statistics & Risk Modeling, 33(3-4):117-138.
Horlemann-Trautmann, Anna-Lena; Marshall, Kyle; Rosenthal, Joachim (2016). Considerations for rank-based cryptosystems. In: IEEE International Symposium on Information Theory (ISIT), Barcelona, 10 July 2016 - 15 July 2016. IEEE, 2544-2548.
Lohier, Théophile; Jabot, Franck; Weigelt, Alexandra; Schmid, Bernhard; Deffuant, Guillaume (2016). Predicting stochastic community dynamics in grasslands under the assumption of competitive symmetry. Journal of Theoretical Biology, 399:53-61.
Tang, Kunkun; Congedo, Pietro M; Abgrall, Rémi (2016). Adaptive surrogate modeling by ANOVA and sparse polynomial dimensional decomposition for global sensitivity analysis in fluid simulation. Journal of Computational Physics, 314:557-589.
Nax, Heinrich H; Rigos, Alexandros (2016). Assortativity evolving from social dilemmas. Journal of Theoretical Biology, 395:194-203.
Cadosch, Dominique; Abel zur Wiesch, Pia; Kouyos, Roger; Bonhoeffer, Sebastian (2016). The Role of Adherence and Retreatment in De Novo Emergence of MDR-TB. PLoS Computational Biology, 12(3):e1004749.
Falletta, Silvia; Sauter, Stefan A (2016). The panel-clustering method for the wave equation in two spatial dimensions. Journal of Computational Physics, 305:217-243.
Maire, Eric; Le Bourlot, Christophe; Adrien, Jérôme; Mortensen, Andreas; Mokso, Rajmund (2016). 20 Hz X-ray tomography during an in situ tensile test. International Journal of Fracture, 200(1-2):3-12.
Zavolokina, Liudmila; Dolata, Mateusz; Schwabe, Gerhard (2016). FinTech transformation: how it-enabled innovations shape the financial sector. In: Feuerriegel, Stefan; Neumann, Dirk. Enterprise Applications, Markets and Services in the Finance Industry. Germany: Springer, 75-88.
Bruggmann, André; Fabrikant, Sara I (2016). How does GIScience support spatio-temporal information search in the humanities? Spatial Cognition & Computation, 16(4):255-271.
Abgrall, Rémi; Bacigaluppi, Paola; Tokareva, Svetlana (2016). How to avoid mass matrix for linear hyperbolic problems. In: Karasözen, B; Manguoglu, M; Tezer-Sezgin, M; Göktepe, S; Ugur, Ö. Numerical Mathematics and Advanced Applications ENUMATH 2015. Cham: Springer, 75-86.
Scholkmann, Felix (2016). Long range physical cell-to-cell signalling via mitochondria inside membrane nanotubes: a hypothesis. Theoretical Biology and Medical Modelling, 13(1):16.
Derungs, Curdin; Purves, Ross S (2016). Mining nearness relations from an n-grams Web corpus in geographical space. Spatial Cognition & Computation, 16(4):301-322.
Sauter, Rafael; Held, Leonhard (2016). Quasi-complete separation in random effects of binary response mixed models. Journal of Statistical Computation and Simulation, 86(14):2781-2796.
Abgrall, Rémi; Amsallem, David; Crisovan, Roxana (2016). Robust model reduction by $\mathit{L^{1}}$-norm minimization and approximation via dictionaries: application to nonlinear hyperbolic problems. Advanced Modeling and Simulation in Engineering Sciences, 3(1):online.
Hosseini, Sayed-Rzgar; Wagner, Andreas (2016). The potential for non-adaptive origins of evolutionary innovations in central carbon metabolism. BMC Systems Biology, 10:97.
Lüthi, Hans P; Heinen, Stefan; Schneider, Gisbert; Glöss, Andreas; Brändle, Martin P; King, Rollin A; Pyzer-Knapp, Edward; Alharbi, Fahhad H; Kais, Sabre (2016). The quantum chemical search for novel materials and the issue of data processing: The InfoMol project. Journal of Computational Science, 15:65-73.
Bach, Dominik R (2015). Anxiety-like behavioural inhibition is normative under environmental threat-reward correlations. PLoS Computational Biology, 11(12):e1004646.
Thöny, Matthias; Billeter, Markus; Pajarola, Renato (2015). The future of scientific terrain visualization. In: ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, Bellevue, WA, USA, 3 November 2015 - 6 November 2015. ACM, 1-4.
Brumm, Johannes; Scheidegger, Simon; Mikushin, Dmitry; Schenk, Olaf (2015). Scalable high-dimensional dynamic stochastic economic modeling. Journal of Computational Science, 11:12-25.
Abgrall, Rémi; Congedo, Pietro Marco; Geraci, Gianluca; Rodio, Maria Giovanna (2015). Stochastic discrete equation method (sDEM) for two-phase flows. Journal of Computational Physics, 299:281-306.
Rickett, Lydia M; Pullen, Nick; Hartley, Matthew; Zipfel, Cyril; Kamoun, Sophien; Baranyi, József; Morris, Richard J (2015). Incorporating prior knowledge improves detection of differences in bacterial growth rate. BMC Systems Biology, 9:60.
Avanzi, Mathieu; Christodoulides, George (2015). Automatic Detection and Annotation of Disfluencies in Spoken French Corpora. In: Interspeech 2015, Dresden, 6 September 2015 - 10 September 2015. International Speech Communication Association, 1849-1853.
Glavitsch, Ulrike; He, Lei; Dellwo, Volker (2015). Stable and Unstable Intervals as a Basic Segmentation Procedure of the Speech Signal. In: INTERSPEECH 2015, Dresden, 6 September 2015 - 10 September 2015. s.n., 31-35.
Röthlisberger, Martina; Karipidis, Iliana I; Pleisch, Georgette; Dellwo, Volker; Richardson, Ulla; Brem, Silvia (2015). Swiss graphogame: concept and design presentation of a computerised reading intervention for children with high risk for poor reading outcomes. In: INTERSPEECH 2015, 16th Annual Conference of the International Speech Communication Association, Dresden, Germany, 6 September 2015 - 10 September 2015. Interspeech, 1878-1879.
Leemann, Adrian; Bernardasci, Camilla; Nolan, Francis (2015). The effect of speakers’regional varieties on listeners’ decision-making. In: Interspeech 2015, Dresden, 6 September 2015 - 10 September 2015. ISCA, 1670-1674.
Leemann, Adrian; Kolly, Marie-José; Goldman, Jean-Philippe; Dellwo, Volker; Hove, Ingrid; Almajai, Ibrahim; Grimm, Sarah; Robert, Sylvain (2015). Voice Äpp: A mobile app for crowdsourcing Swiss German dialect data. In: Interspeech 2015, Dresden, 6 September 2015 - 10 September 2015, 2804-2808.
Schick, Carl J; Weiss, Mona; Kolbe, Michaela; Marty, Adrian; Dambach, Micha; Knauth, Axel; Spahn, Donat R; Grote, Gudela; Grande, Bastian (2015). Simulation with PARTS (phase-augmented research and training scenarios): a structure facilitating research and assessment in simulation. Simulation in healthcare : journal of the Society for Simulation in Healthcare, 10(3):178-187.
Korn, Christoph W; Bach, Dominik R (2015). Maintaining homeostasis by decision-making. PLoS Computational Biology, 11(5):e1004301.
Bach, Dominik R (2015). A cost minimisation and Bayesian inference model predicts startle reflex modulation across species. Journal of Theoretical Biology, 370:53-60.
Siebourg-Polster, Juliane; Mudrak, Daria; Emmenlauer, Mario; Rämö, Pauli; Dehio, Christoph; Greber, Urs; Fröhlich, Holger; Beerenwinkel, Niko (2015). NEMix: Single-cell Nested Effects Models for Probabilistic Pathway Stimulation. PLoS Computational Biology, 11(4):e1004078.
Gallego, Guillermo; Yezzi, Anthony (2015). A Compact Formula for the Derivative of a 3-D Rotation in Exponential Coordinates. Journal of Mathematical Imaging and Vision, 51(3):378-384.
Schwaninger, Clemens Arthur; Menshykau, Denis; Iber, Dagmar (2015). Simulating organogenesis: Algorithms for the image-based determination of displacement fields. ACM Transactions on Modeling and Computer Simulation, 25(2):1-19.
Vayena, Effy; Salathé, Marcel; Madoff, Lawrence C; Brownstein, John S (2015). Ethical challenges of big data in public health. PLoS Computational Biology, 11(2):e1003904.
Abgrall, Rémi; de Santis, Dante (2015). Linear and non-linear high order accurate residual distribution schemes for the discretization of the steady compressible Navier–Stokes equations. Journal of Computational Physics, 283:329-359.
Krajbich, Ian; Hare, Todd A; Bartling, Björn; Morishima, Yosuke; Fehr, Ernst (2015). A common mechanism underlying food choice and social decisions. PLoS Computational Biology, 11(10):e1004371.
Rutishauser, Ueli; Slotine, Jean-Jaques; Douglas, Rodney (2015). Computation in cynamically bounded asymmetric systems. PLoS Computational Biology, 11(1):e1004039.
Barbour, A D; McVinish, R; Pollett, P K (2015). Connecting deterministic and stochastic metapopulation models. Journal of Mathematical Biology, 71(6-7):1481-1504.
Hosseini, Sayed-Rzgar; Barve, Aditya; Wagner, Andreas (2015). Exhaustive analysis of a genotype space comprising 1015 central carbon metabolisms reveals an organization conducive to metabolic innovation. PLoS Computational Biology, 11(8):e1004329.
Barbour, A D; Luczak, M J (2015). Individual and patch behaviour in structured metapopulation models. Journal of Mathematical Biology, 71(3):713-733.
Grabe, Volker; Bülthoff, Heinrich H; Scaramuzza, Davide; Giordano, Paolo Robuffo (2015). Nonlinear Ego-Motion Estimation from Optical Flow for Online Control of a Quadrotor UAV. International Journal of Robotics Research, 34(8):1114-1135.
Felekis, D; Vogler, H; Mecja, G; Muntwyler, S; Nestorova, A; Huang, T; Sakar, M S; Grossniklaus, U; Nelson, B J (2015). Real-time automated characterization of 3D morphology and mechanics of developing plant cells. International Journal of Robotics Research, 34(8):1136-1146.
Meyer, Sonja; Ruppen, Andreas; Hilty, Lorenz (2015). The things of the internet of things in BPMN. In: Persson, Anne; Stirna, Janis. Advanced Information Systems Engineering Workshops. Cham: Springer, 285-297.
Bolzoni, Paolo; Helmer, Sven; Wellenzohn, Kevin; Gamper, Johann; Andritsos, Periklis (2014). Efficient itinerary planning with category constraints. In: Proceedings of the 22nd ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, Dallas/Fort Worth, TX, USA, November 4-7, 2014, Dallas, 4 November 2014 - 7 November 2014. ACM, 203-212.
Vilar, François; Maire, Pierre-Henri; Abgrall, Rémi (2014). A discontinuous Galerkin discretization for solving the two-dimensional gas dynamics equations written under total Lagrangian formulation on general unstructured grids. Journal of Computational Physics, 276:188-234.
Jennings, G I; Prigge, D; Carney, S; Karni, S; Rauch, J B; Abgrall, Rémi (2014). Water wave propagation in unbounded domains. Part II: Numerical methods for fractional PDEs. Journal of Computational Physics, 275:443-458.
Agus, Marco; Gobbetti, Enrico; Jaspe Villanueva, Alberto; Mura, Claudio; Pajarola, Renato (2014). SOAR: Stochastic optimization for affine global point set registration. In: Proceedings Vision, Modeling and Visualization, Darmstadt, Germany, 8 October 2014 - 10 October 2014. The Eurographics Association, 103-110.
Wuest, Simon L; Richard, Stéphane; Walther, Isabelle; Furrer, Reinhard; Anderegg, Roland; Sekler, Jörg; Egli, Marcel (2014). A novel microgravity simulator applicable for three-dimensional cell culturing. Microgravity Science and Technology, 26(2):77-88.
Kolly, Marie-José; Leemann, Adrian; Dellwo, Volker (2014). Foreign accent recognition based on temporal information contained in lowpass-filtered speech. In: Interspeech 2014, Singapore, 14 September 2014 - 18 September 2014. International Speech Communication Association, 2175-2179.
Maurer, Dieter; Mok, Peggy; Friedrichs, Daniel; Dellwo, Volker (2014). Intelligibility of high-pitched vowel sounds in the singing and speaking of a female Cantonese Opera singer. In: Fifteenth Annual Conference of the International Speech Communication Association, Singapore, 14 September 2014 - 18 September 2014. ISCA, 2132-2133.
Dellwo, Volker; Mok, Peggy; Jenny, Mathias (2014). Rhythmic variability between some Asian languages: results from an automatic analysis of temporal characteristics. In: Interspeech 2014, Singapore, 14 September 2014 - 18 September 2014. International Speech Communication Association, 1708-1711.
He, Lei; Dellwo, Volker (2014). Speaker idiosyncratic variability of intensity across syllables. In: Interspeech 2014, Singapore, 14 September 2014 - 18 September 2014. International Speech Communication Association, 233-237.
Koch-Medina, Pablo; Munari, Cosimo (2014). Law-invariant risk measures: extension properties and qualitative robustness. Statistics & Risk Modeling, 31(3):1-22.
Abgrall, Rémi; Smolarkiewicz, Piotr; Xiao, Feng; Zaleski, Stéphane (2014). Frontiers in computational physics: modeling the earth system. Journal of Computational Physics, 271:1.
Payne, Joshua L; Wagner, Andreas (2014). Latent phenotypes pervade gene regulatory circuits. BMC Systems Biology, 8:64.
Stankevicius, Aistis; Huys, Quentin J M; Kalra, Aditi; Seriès, Peggy (2014). Optimism as a prior belief about the probability of future reward. PLoS Computational Biology, 10(5):e1003605.
Barve, Aditya; Hosseini, Sayed-Rzgar; Martin, Olivier C; Wagner, Andreas (2014). Historical contingency and the gradual evolution of metabolic properties in central carbon and genome-scale metabolisms. BMC Systems Biology, 8:48.
Balsara, Dinshaw S; Dumbser, Michael; Abgrall, Rémi (2014). Multidimensional HLLC Riemann solver for unstructured meshes – with application to Euler and MHD flows. Journal of Computational Physics, 261:172-208.
Abgrall, Rémi; Congedo, P M; Geraci, G (2014). A one-time truncate and encode multiresolution stochastic framework. Journal of Computational Physics, 257(Part A):19-56.
Abgrall, Rémi; Beaugendre, H; Dobrzynski, C (2014). An immersed boundary method using unstructured anisotropic mesh adaptation combined with level-sets and penalization techniques. Journal of Computational Physics, 257(Part A):83-101.
Bauer, Roman; Zubler, Frédéric; Pfister, Sabina; Hauri, Andreas; Pfeiffer, Michael; Muir, Dylan R; Douglas, Rodney J (2014). Developmental self-construction and -configuration of functional neocortical neuronal networks. PLoS Computational Biology, 10(12):e1003994.
Kollmorgen, Sepp; Hahnloser, Richard H R (2014). Dynamic alignment models for neural coding. PLoS Computational Biology, 10(3):e1003508.
Schmidt, Thomas S B; Matias Rodrigues, João F; von Mering, Christian (2014). Ecological consistency of SSU rRNA-based operational taxonomic units at a global scale. PLoS Computational Biology, 10(4):e1003594.
Smith, David R; Vinogradov, Serge N; Hoogewijs, David (2014). Hemoglobins in the genome of the cryptomonad Guillardia theta. Biology Direct, 9:7.
Diaconescu, Andreea O; Mathys, Christoph; Weber, Lilian A E; Daunizeau, Jean; Kasper, Lars; Lomakina, Ekaterina I; Fehr, Ernst; Stephan, Klaas E (2014). Inferring on the intentions of others by hierarchical bayesian learning. PLoS Computational Biology, 10(9):e1003810.
Feller, Chrystel; Gabriel, Jean-Pierre; Mazza, Christian; Yerly, Florence (2014). Pattern formation in auxin flux. Journal of Mathematical Biology, 68(4):879-909.
Meyer, Sebastian; Held, Leonhard (2014). Power-law models for infectious disease spread. Annals of Applied Statistics, 8(3):1612-1639.
Althaus, Christian L; Joos, Beda; Perelson, Alan S; Günthard, Huldrych F (2014). Quantifying the turnover of transcriptional subclasses of HIV-1-infected cells. PLoS Computational Biology, 10(10):e1003871.
Nax, Heinrich H; Pradelski, Bary S R; Young, H Peyton (2013). Decentralized dynamics to optimal and stable states in the assignment game. In: 2013 IEEE 52nd Annual Conference on Decision and Control (CDC), Firenze, 10 December 2013 - 13 December 2013. Institute of Electrical and Electronics Engineers, 2391-2397.
Payne, Joshua L; Wagner, Andreas (2013). Constraint and contingency in multifunctional gene regulatory circuits. PLoS Computational Biology, 9(6):e1003071.
Bank, Randolph E; Parsania, Asieh; Sauter, Stefan (2013). Saturation estimates for hp-finite element methods. Computing and Visualization in Science, 16(5):195-217.
Maire, Pierre-Henri; Abgrall, Rémi; Breil, Jérôme; Loubère, Raphaël; Rebourcet, Bernard (2013). A nominally second-order cell-centered Lagrangian scheme for simulating elastic–plastic flows on two-dimensional unstructured grids. Journal of Computational Physics, 235(15):626-665.
Abgrall, Rémi; Congedo, Pietro Marco (2013). A semi-intrusive deterministic approach to uncertainty quantification in non-linear fluid flow problems. Journal of Computational Physics, 235:828-845.
Dobay, Akos; Gall, Gabriella E C; Rankin, Daniel J; Bagheri, Homayoun C (2013). Renaissance model of an epidemic with quarantine. Journal of Theoretical Biology, 317:348-358.
Hess, Florian; Fürnstahl, Philipp; Gallo, Luigi-Maria; Schweizer, Andreas (2013). 3D analysis of the proximal interphalangeal joint kinematics during flexion. Computational and Mathematical Methods in Medicine, 2013:138063.
Lieder, Falk; Stephan, Klaas E; Daunizeau, Jean; Garrido, Marta I; Friston, Karl J (2013). A neurocomputational model of the mismatch negativity. PLoS Computational Biology, 9(11):e1003288.
Nessler, B; Pfeiffer, M; Büsing, L; Maass, W (2013). Bayesian computation emerges in generic cortical microcircuits through spike-timing-dependent plasticity. PLoS Computational Biology, 9(4):e1003037.
Bichsel, Manuel; Barbour, A D; Wagner, Andreas (2013). Estimating the fitness effect of an insertion sequence. Journal of Mathematical Biology, 66(1-2):95-114.
Schliebs, S; Kasabov, N (2013). Evolving spiking neural networks: A Survey. Evolving Systems:online.
Dominguez Gouvêa, Daniel; de A Assis D Muniz, Cyro; Pinto, Gilson A; Avritzer, Alberto; Leao, Rosa Maria Meri; de Souza e Silva, Edmundo; Diniz, Morganna Carmem; Berardinelli, Luca; Leite, Julius C B; Mossé, Daniel; Cai, Yuanfang; Dalton, Mike; Happe, Lucia; Koziolek, Anne (2013). Experience with model-based performance, reliability and adaptability assessment of a complex industrial architecture. Software and Systems Modeling, 12(4):765-787.
Lieder, Falk; Daunizeau, Jean; Garrido, Marta I; Friston, Karl J; Stephan, Klaas E (2013). Modelling trial-by-trial changes in the mismatch negativity. PLoS Computational Biology, 9(2):e1002911.
Buerzle, W; Haller, C M; Jabareen, M; Egger, J; Mallik, A S; Ochsenbein-Kölble, N; Ehrbar, M; Mazza, E (2013). Multiaxial mechanical behavior of human fetal membranes and its relationship to microstructure. Biomechanics and Modeling in Mechanobiology, 12(4):747-762.
Strobel, L A; Hild, N; Mohn, D; Stark, W J; Hoppe, A; Gbureck, U; Horch, R E; Kneser, U; Boccaccini, A R (2013). Novel strontium-doped bioactive glass nanoparticles enhance proliferation and osteogenic differentiation of human bone marrow stromal cells. Journal of Nanoparticle Research, 15(7):1780.
Palamara, Gian Marco; Delius, Gustav W; Smith, Matthew J; Petchey, Owen L (2013). Predation effects on mean time to extinction under demographic stochasticity. Journal of Theoretical Biology, 334:61-70.
Gubler, Stefanie; Endrizzi, Stefano; Gruber, Stephan; Purves, Ross S (2013). Sensitivities and uncertainties of modeled ground temperatures in mountain environments. Geoscientific Model Development, 6(4):1319-1336.
Zubler, Frederic; Hauri, Andreas; Pfister, Sabina; Bauer, Roman; Anderson, John C; Whatley, Adrian M; Douglas, Rodney J (2013). Simulating cortical development as a self constructing process: A novel multi-scale approach combining molecular and physical aspects. PLoS Computational Biology, 9(8):e1003173.
Beerenwinkel, Niko; Montazeri, Hesam; Schuhmacher, Heike; Knupfer, Patrick; von Wyl, Viktor; Furrer, Hansjakob; Battegay, Manuel; Hirschel, Bernard; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Yerly, Sabine; Böni, Jürg; Klimkait, Thomas; Cellerai, Cristina; Günthard, Huldrych F (2013). The individualized genetic barrier predicts treatment response in a large cohort of HIV-1 infected patients. PLoS Computational Biology, 9(8):e1003203.
Michel, Frank I; Schmitt, Kai-Uwe; Greenwald, Richard M; Russell, Kelly; Simpson, Frank I; Schulz, David; Langran, Mike (2013). White Paper: functionality and efficacy of wrist protectors in snowboarding—towards a harmonized international standard. Sports Engineering, 16(4):197-210.
Repin, S I; Samrowski, T S; Sauter, S A (2012). Combined a posteriori modelling-discretization error estimate for elliptic problems with variable coefficients. Mathematical Modelling and Numerical Analysis, 46(6):1389-1405.
Perony, Nicolas; Tessone, Claudio J; König, Barbara; Schweitzer, Frank (2012). How Random Is Social Behaviour? Disentangling Social Complexity through the Study of a Wild House Mouse Population. PLoS Computational Biology, 8(11):e1002786.
Jeanneret, Cédric; Glinz, Martin; Baudry, Benoit; Combemale, Benoit (2012). Impact of footprinting on model quality: an experimental evaluation. In: MoDRE 2012 - Second International Workshop on Model-Driven Requirements Engineering (MoDRE), Chicago, IL, USA, 24 September 2012, 77-86.
Ercolessi, E; Schiavina, M (2012). Geometry of mixed states for a q-bit and the quantum Fisher information tensor. Journal of Physics A: Mathematical and General, 45(36):365303-17pp.
Avella Gonzalez, Oscar J; van Aerde, Karlijn I; van Elburg, Ronald A J; Poil, Simon-Shlomo; Mansvelder, Huibert D; Linkenkaer-Hansen, Klaus; van Pelt, Jaap; van Ooyen, Arjen (2012). External drive to inhibitory cells induces alternating episodes of high- and low-amplitude oscillations. PLoS Computational Biology, 8(8):e1002666.
Piccinno, Fabiano; Gottschalk, Fadri; Seeger, Stefan; Nowack, Bernd (2012). Industrial production quantities and uses of ten engineered nanomaterials in Europe and the world. Journal of Nanoparticle Research, 14(9):1109-1120.
Matias Rodrigues, João F; Rankin, Daniel J; Rossetti, Valentina; Wagner, Andreas; Bagheri, Homayoun C (2012). Differences in cell division rates drive the evolution of terminal and differentiation in microbes. PLoS Computational Biology, 8(4):e1002468.
Najnudel, J; Nikeghbali, Ashkan (2012). On some universal sigma-finite measures related to a remarkable class of submartingales. Stochastic Processes and their Applications, 122(4):1582-1600.
Reboux, Sylvain; Schrader, Birte; Sbalzarini, Ivo F (2012). A self-organizing Lagrangian particle method for adaptive-resolution advection–diffusion simulations. Journal of Computational Physics, 231(9):3623-3646.
Gonnet, Pedro; Dimopoulos, Sotiris; Widmer, Lukas; Stelling, Jörg (2012). A specialized ODE integrator for the efficient computation of parameter sensitivities. BMC Systems Biology, 6:46.
Mačković, M; Hoppe, A; Detsch, R; Mohn, D; Stark, W J; Spiecker, E; Boccaccini, A R (2012). Bioactive glass (type 45S5) nanoparticles: in vitro reactivity on nanoscale and biocompatibility. Journal of Nanoparticle Research, 14:966.
Klatte, Diethard (2012). Comments on: Stability in linear optimization and related topics. A personal tour. Top. An Official Journal of the Spanish Society of Statistics and Operations Research, 20(2):250-254.
Buchin, K; Arseneau, T J M; Sijben, S; Willems, E P (2012). Detecting movement patterns using Brownian bridges. In: Cruz, Isabel; Knoblock, Craig; Kröger, Peer; Tanin, Egemen; Widmayer, Peter. Proceedings of the 20th International Conference on Advances in Geographic Information Systems. Redondo Beach, CA: Association for Computing Machinery, 119-128.
Friston, K J; Shiner, T; FitzGerald, T; Galea, J M; Adams, R; Brown, H; Dolan, R J; Moran, R; Stephan, K E; Bestmann, S (2012). Dopamine, affordance and active inference. PLoS Computational Biology, 8(1):e1002327.
Riebler, A; Held, L; Rue, H (2012). Estimation and extrapolation of time trends in registry data — Borrowing strength from related populations. Annals of Applied Statistics, 6(1):304-333.
Philip, Tom; Wende, Erik; Schwabe, Gerhard (2012). Exploring failures at the team level in offshore-outsourced software development projects. In: Kotlarsky, Julia; Oshri, Ilan; Willcocks, Leslie. The Dynamics of Global Sourcing: Perspectives and Practices. Berlin: Springer, 194-211.
Delgado-Gonzalo, R; Thévenaz, P; Unser, M (2012). Exponential splines and minimal-support bases for curve representation. Computer Aided Geometric Design, 29(2):109-128.
Peterseim, D; Sauter, Stefan (2012). Finite elements for elliptic problems with highly varying, nonperiodic diffusion matrix. Multiscale Modeling & Simulation: a SIAM Interdisciplinary Journal, 10(3):665-695.
Aoyama, A; Krummenacher, P; Palla, A; Hilti, L M; Brugger, P (2012). Impaired spatial-temporal integration of touch in xenomelia (body integrity identity disorder). Spatial Cognition & Computation, 12(2-3):96-110.
Leventhal, Gabriel E; Kouyos, Roger; Stadler, Tanja; von Wyl, Viktor; Yerly, Sabine; Böni, Jürg; Cellerai, Cristina; Klimkait, Thomas; Günthard, Huldrych F; Bonhoeffer, Sebastian (2012). Inferring epidemic contact structure from phylogenetic trees. PLoS Computational Biology, 8(3):e1002413.
Barendse, M T; Oort, F J; Werner, Christina S; Ligtvoet, R; Schermelleh-Engel, K (2012). Measurement bias detection through factor analysis. Structural Equation Modeling, 19(4):561-579.
Stoop, R; Martignoli, S; Benner, P; Stoop, R L; Uwate, Y (2012). Shrimps: Occurence, Scaling and Relevance. International Journal of Bifurcation and Chaos in Applied Sciences and Engineering, 22(10):1230032.
Jol, Stefan J; Kümmel, Anne; Terzer, Marco; Stelling, Jörg; Heinemann, Matthias (2012). System-Level Insights into Yeast Metabolism by Thermodynamic Analysis of Elementary Flux Modes. PLoS Computational Biology, 8(3):e1002415.
Grasedyk, L; Greff, I; Sauter, S (2012). The AL Basis for the solution of elliptic problems in heterogeneous media. Multiscale Modeling & Simulation, 10(1):245-258.
Fiddes, Joel; Gruber, Stephan (2012). TopoSUB: a tool for efficient large area numerical modelling in complex topography at sub-grid scales. Geoscientific Model Development, 5(5):1245-1257.
Barbour, A D; Pollett, P K (2012). Total variation approximation for quasi-equilibrium distributions, II. Stochastic Processes and their Applications, 122(11):3740-3756.
Goswami, Prashant; Pajarola, Renato (2011). Time adaptive approximate SPH. In: Workshop on Virtual Reality Interaction and Physical Simulation VRIPHYS, Lyon, France, 5 December 2011 - 6 December 2011. Eurographics, 19-28.
Manganiello, F; Trautmann, A L; Rosenthal, J (2011). On conjugacy classes of subgroups of the general linear group and cyclic orbit codes. In: IEEE. IEEE International Symposium on Information Theory proceedings (ISIT), 2011 : July 31, 2011 - Aug. 5, 2011, St. Petersburg, Russia. Piscataway, NJ, US: IEEE, 1916-1920.
Zamora-Sillero, E; Hafner, M; Ibig, A; Stelling, J; Wagner, A (2011). Efficient characterization of high-dimensional parameter spaces for systems biology. BMC Systems Biology, 5:142.
Guillet, T; Teyssier, R (2011). A simple multigrid scheme for solving the Poisson equation with arbitrary domain boundaries. Journal of Computational Physics, 230(12):4756-4771.
Heinzmann, D; Barbour, A D; Torgerson, P R (2011). A mechanistic individual-based two-host interaction model for the transmission of a parasitic disease. International Journal of Biomathematics, 4(4):443-460.
Sain, S R; Furrer, R; Cressie, N C (2011). A spatial analysis of multivariate output from regional climate models. Annals of Applied Statistics, 5(1):150-175.
Kelava, A; Werner, Christina S; Schermelleh-Engel, K; Moosbrugger, H; Zapf, D; Ma, Y; Cham, H; Aiken, L S; West, S G (2011). Advanced nonlinear latent variable modeling: Distribution analytic LMS and QML estimators of interaction and quadratic effects. Structural Equation Modeling, 18(3):465-491.
Bailly-Bechet, Marc; Benecke, Arndt; Hardt, Wolf Dietrich; Lanza, Valentina; Sturm, Alexander; Zecchina, Riccardo (2011). An externally modulated, noise-driven switch for the regulation of SPI1 in Salmonella enterica serovar Typhimurium. Journal of Mathematical Biology, 63(4):637-662.
Schilling, S; Willecke, M; Aegerter-Wilmsen, T; Cirpka, O A; Basler, K; von Mering, C (2011). Cell-sorting at the a/p boundary in the Drosophila wing primordium: a computational model to consolidate observed non-local effects of hh signaling. PLoS Computational Biology, 7(4):e1002025.
Straumann, Ralph K; Purves, Ross S (2011). Computation and elicitation of valleyness. Spatial Cognition and Computation, 11(2):178-204.
Samal, A; Wagner, A; Martin, O C (2011). Environmental versatility promotes modularity in genome-scale metabolic networks. BMC Systems Biology, 5:135.
Fessel, G; Snedeker, J G (2011). Equivalent stiffness after glycosaminoglycan depletion in tendon--an ultra-structural finite element model and corresponding experiments. Journal of Theoretical Biology, 268(1):77-83.
Gençay, Ramazan; Gradojevic, Nikola (2011). Errors-in-Variables Estimation with Wavelets. Journal of Statistical Computation and Simulation, 81(11):1545-1564.
Helmuth, Jo A; Reboux, Sylvain; Sbalzarini, Ivo F (2011). Exact stochastic simulations of intra-cellular transport by mechanically coupled molecular motors. Journal of Computer Science, 2(4):324-334.
Petchey, O L; Beckerman, A P; Riede, J O; Warren, P H (2011). Fit, efficiency, and biology: Some thoughts on judging food web models. Journal of Theoretical Biology, 279(1):169-171.
Brodersen, Kay H; Schofield, Thomas M; Leff, Alexander P; Ong, Cheng S; Lomakina, Ekaterina I; Buhmann, Joachim M; Stephan, Klaas E (2011). Generative embedding for model-based classification of FMRI data. PLoS Computational Biology, 7(6):e1002079.
Matias Rodrigues, J F; Wagner, A (2011). Genotype networks, innovation, and robustness in sulfur metabolism. BMC Systems Biology, 5:39.
Ciarlet, P G; Ciarlet Jr, P; Iosifescu, O; Sauter, S; Zou, J (2011). Lagrange multipliers in intrinsic elasticity. Mathematical Models and Methods in Applied Sciences, 21(4):651-666.
Chumbley, J R; Flandin, G; Bach, D R; Daunizeau, Jean; Fehr, Ernst; Dolan, R J; Friston, K J (2011). Learning and generalization under ambiguity: An fMRI Study. PLoS Computational Biology, 8(1):e1002346.
Davidov, Eldad; Thörner, Stefan; Schmidt, Peter; Gosen, Stefanie; Wolf, Carina (2011). Level and change of group-focused enmity in Germany: unconditional and conditional latent growth curve models with four panel waves. AStA Advances in Statistical Analysis, 95(4):481-500.
Lyon, J E; Pandit, S A; van Schaik, C P; Pradhan, G R (2011). Mating strategies in primates: A game theoretical approach to infanticide. Journal of Theoretical Biology, 274(1):103-108.
Schipani, D; Elia, M; Rosenthal, J (2011). On the decoding complexity of cyclic codes up to the BCH bound. In: IEEE. IEEE International Symposium on Information Theory proceedings (ISIT), 2011 : July 31, 2011 - Aug. 5, 2011, St. Petersburg, Russia. Piscataway, NJ, US: IEEE, 835-839.
Daunizeau, Jean; Preuschoff, Kerstin; Friston, Karl; Stephan, Klaas E (2011). Optimizing experimental design for comparing models of brain function. PLoS Computational Biology, 7(11):e1002280.
Horn, A; Ullrich, O; Huber, K; Hemmersbach, R (2011). PMT (Photomultiplier) Clinostat. Microgravity Science and Technology, 23(1):67-71.
Koumoutsakos, P; Bayati, B; Milde, F; Tauriello, G (2011). Particle simulations of morphogenesis. Mathematical Models and Methods in Applied Sciences, 21(Supp. 1):955-1006.
Flórez, Lope A; Gunka, Katrin; Polania, Rafael; Tholen, Stefan; Stülke, Jörg (2011). SPABBATS: A pathway-discovery method based on Boolean satisfiability that facilitates the characterization of suppressor mutants. BMC Systems Biology, 5:5.
Nakajima, Kohei; Haruna, Taichi (2011). Self-organized perturbations enhance class IV behavior and 1/f power spectrum in elementary cellular automata. Molecular Biosystems, 105(3):216-224.
Huang, D; Caflisch, A (2011). The free energy landscape of small molecule unbinding. PLoS Computational Biology, 7(2):e1002002.
Milias-Argeitis, Andreas; Porreca, Riccardo; Summers, Sean; Lygeros, John (2010). Bayesian model selection for the yeast GATA-factor network: a comparison of computational approaches. In: 49th IEEE Conference on Decision and Control, Atlanta, GA, 15 December 2010 - 17 December 2010, 3379-84.
Porreca, Riccardo; Cinquemani, Eugenio; Lygeros, John; Ferrari-Trecate, Giancarlo (2010). Structural identification of unate-like genetic network models from time-lapse protein concentration measurements. In: 49th IEEE Conference on Decision and Control, Atlanta, GA, 15 December 2010 - 17 December 2010, 2529-34.
Suter, Susanne K; Zollikofer, Christoph P E; Pajarola, Renato (2010). Application of tensor approximation to multiscale volume feature representations. In: VMV 2010 - 15th International Workshop on Vision, Modeling and Visualization, Siegen, 15 November 2010 - 17 November 2010. Eurographics Association, 203-210.
Goswami, P; Zhang, Y; Pajarola, R; Gobbetti, E (2010). High quality interactive rendering of massive point models using multi-way kd-trees. In: Pacific Graphics, Hangzhou, China, 25 September 2010 - 27 September 2010.
Tientcheu Ngouabeu, Aubery Marchel; Miyashita, Shuhei; Füchslin, Rudolf Marcel; Nakajima, Kohei; Göldi, Maurice; Pfeifer, Rolf (2010). Self-organized segregation effect on self-assembling robots. In: 12th International Conference on the Synthesis and Simulation of Living Systems (ALife XII), Odense, Denmark, 19 August 2010 - 23 August 2010. MIT Press, 232-238.
Bertoin, J (2010). A limit theorem for trees of alleles in branching processes with rare neutral mutations. Stochastic Processes and their Applications, 120(5):678-697.
Penny, W D; Stephan, K E; Daunizeau, J; Rosa, M J; Friston, K J; Schofield, T M; Leff, A P (2010). Comparing families of dynamic causal models. PLoS Computational Biology, 6(3):e1000709.
Cerdonio, M; de Marchi, F; de Pietri, R; Jetzer, P; Marzari, F; Mazzolo, G; Ortolan, A; Sereno, M (2010). Effects of interplanetary dust on the LISA drag-free constellation. Celestial Mechanics and Dynamical Astronomy, 107(1-2):255-264.
Kascha, Christian; Ravazzolo, Francesco (2010). Combining inflation density forecasts. Journal of Forecasting, 29(1-2):231-250.
Barcikowski, S; Hahn, A; Guggenheim, M; Reimers, K; Ostendorf, A (2010). Biocompatibility of nanoactuators: stem cell growth on laser-generated nickel–titanium shape memory alloy nanoparticles. Journal of Nanoparticle Research, 12(5):1733-1742.
Schrader, Birte; Reboux, Sylvain; Sbalzarini, Ivo F (2010). Discretization correction of general integral PSE Operators for particle methods. Journal of Computational Physics, 229(11):4159-4182.
Groeber, Patrick; Rauhut, Heiko (2010). Does ignorance promote norm compliance? Computational & Mathematical Organization Theory, 16(1):1-28.
Samal, A; Matias Rodrigues, J F; Jost, J; Martin, O C; Wagner, A (2010). Genotype networks in metabolic reaction spaces. BMC Systems Biology, 4:30.
Webster, D; Wasserman, E; Ehrbar, M; Weber, Franz E; Bab, I; Müller, R (2010). Mechanical loading of mouse caudal vertebrae increases trabecular and cortical bone mass-dependence on dose and genotype. Biomechanics and Modeling in Mechanobiology, 9(6):737-747.
Geiser, C; Eid, M; Nussbeck, F W; Courvoisier, D S; Cole, D A (2010). Multitrait-multimethod change modeling. Advances in Statistical Analysis (AStA), 94(2):185-201.
Lang, K; Strell, C; Niggemann, B; Zänker, K S; Hilliger, A; Engelmann, F; Ullrich, O (2010). Real-time video-microscopy of migrating immune cells in altered gravity during parabolic flights. Microgravity Science and Technology, 22(1):63-69.
Espinosa-Soto, C; Wagner, A (2010). Specialization can drive the evolution of modularity. PLoS Computational Biology, 6(3):e1000719.
Rossetti, Valentina; Schirrmeister, Bettina E; Bernasconi, Marco V; Bagheri, Homayoun C (2010). The evolutionary path to terminal differentiation and division of labor in cyanobacteria. Journal of Theoretical Biology, 262(1):23-34.
Fendt, Sarah-Maria; Sauer, Uwe (2010). Transcriptional regulation of respiration in yeast metabolizing differently repressive carbon substrates. BMC Systems Biology, 4(1):12.
Gazzola, M; Burckhardt, C J; Bayati, B; Engelke, M; Greber, U F; Koumoutsakos, P (2009). A stochastic model for microtubule motors describes the in vivo cytoplasmic transport of human adenovirus. PLoS Computational Biology, 5(12):e1000623.
Cinquemani, Eugenio; Porreca, Riccardo; Lygeros, John; Ferrari-Trecate, Giancarlo (2009). Canalizing structure of genetic network dynamics: modelling and identification via mixed-integer programming. In: Combined 48th IEEE Conference on Decision and Control and 28th Chinese Control Conference, Shanghai, 15 December 2009 - 18 December 2009, 5618-23.
Staub, K E (2009). Simple tests for exogeneity of a binary explanatory variable in count data regression models. Communications in Statistics - Simulation and Computation, 38(9):1834-1855.
Bayati, B; Chatelain, P; Koumoutsakos, P (2009). D-leaping: Accelerating stochastic simulation algorithms for reactions with delays. Journal of Computational Physics, 228(16):5908-5916.
Marco, D E; Carbajal, J P; Cannas, S; Pérez-Arnedo, R; Hidalgo-Perea, Á; Olivares, J; Ruiz-Sainz, J E; Sanjuán, J (2009). An experimental and modelling exploration of the host-sanction hypothesis in legume-rhizobia mutualism. Journal of Theoretical Biology, 259(3):423-433.
Bachmann, A; Bernstein, A (2009). Software process data quality and characteristics - a historical view on open and closed source projects. In: IWPSE-Evol'09: Proceedings of the joint international and annual ERCIM workshops on Principles of software evolution (IWPSE) and software evolution (Evol) workshops, Amsterdam, The Netherlands, August 2009, 119-128.
Hafner, M; Koeppl, H; Hasler, M; Wagner, A (2009). 'Glocal' robustness analysis and model discrimination for circadian oscillators. PLoS Computational Biology, 5(10):e1000534.
Liehr, F; Preusser, T; Rumpf, M; Sauter, S; Schwen, L O (2009). Composite finite elements for 3D image based computing. Computing and Visualization in Science, 12(4):171-188.
Heinzmann, D; Barbour, A D; Torgerson, P R (2009). Compound processes as models for clumped parasite data. Mathematical Biosciences, 222(1):27-35.
Tegnér, J N; Compte, A; Auffray, C; An, G; Cedersund, G; Clermont, G; Gutkin, B; Oltvai, Z; Stephan, K E; Thomas, R; Villoslada, P (2009). Computational disease modeling - fact or fiction? BMC Systems Biology, 3:56.
Tomás, V; Rosenthal, J; Smarandache, R (2009). Decoding of MDP convolutional codes over the erasure channel. In: IEEE. 2009 IEEE International Symposium on Information Theory, ISIT 2009, Seoul, Korea, 28 June - 03 July 2009. New York, US: Institute of Electrical and Electronics Engineer, 556-560.
Matias Rodrigues, J F; Wagner, A (2009). Evolutionary plasticity and innovations in complex metabolic reaction networks. PLoS Computational Biology, 5(12):e1000613.
Marbach, Daniel; Schaffter, Thomas; Mattiussi, Claudio; Floreano, Dario (2009). Generating realistic in silico gene networks for performance assessment of reverse engineering methods. Journal of Computational Biology, 16(2):229-39.
Motreanu, D; Motreanu, V V; Papageorgiou, N S (2009). Multiple solutions for Dirichlet problems which are superlinear at +∞ and (sub)linear at -∞. Communications in Applied Analysis, 13(3):341-357.
Li, Xin; Hu, Daning; Dang, Yan; Chen, Hsinchun; Roco, Mihail C; Larson, Catherine A; Chan, Joyce (2009). Nano Mapper: an Internet knowledge mapping system for nanotechnology development. Journal of Nanoparticle Research, 11:529-552.
Bolthausen, E; Kistler, N (2009). On a nonhierarchical version of the generalized random. Stochastic Processes and their Applications, 119(7):2357-2386.
Tomko, M; Winter, S (2009). Pragmatic construction of destination descriptions for urban environments. Spatial Cognition and Computation, 9(1):1-29.
Kiebel, S J; von Kriegstein, K; Daunizeau, J; Friston, K J (2009). Recognizing sequences of sequences. PLoS Computational Biology, 5(8):e1000464.
Schenker, Patricia; Baici, Antonio (2009). Simultaneous interaction of enzymes with two modifiers: reappraisal of kinetic models and new paradigms. Journal of Theoretical Biology, 261(2):318-329.
Müller, S; Rufibach, K (2009). Smooth tail-index estimation. Journal of Statistical Computation and Simulation, 79(9):1155-1167.
Tobias, Robert; Buchsbaum, T (2009). The effectiveness of reminders: Testing the adequacy of a prospective-memory model based on dynamic field data. In: Edmonds, Bruce. Conference proceedings : the 6th Conference of the European Social Simulation Association; 14th-18th September, 2009; University of Surrey, Guildford, United Kingdom. Guildford, CD-ROM.
Bolthausen, E; Caravenna, F; Tilière, B (2009). The quenched critical point of a diluted disordered polymer model. Stochastic Processes and their Applications, 119(5):1479-1504.
Pasley, Robert; Clough, Paul; Purves, Ross S; Twaroch, Florian A (2008). Mapping geographic coverage of the web. In: 16th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems (ACM GIS 2008), Irvine, US, 5 November 2008 - 7 November 2008, 1-9.
Flück, M (2008). Selected papers from the 'Omics: Assembling Systems Biology' Workshop. IET systems biology, 2(6):383-384.
Banjai, L; Börm, S; Sauter, S (2008). FEM for elliptic eigenvalue problems: how coarse can the coarsest mesh be chosen? An experimental study. Computing and Visualization in Science, 11(4-6):363-372.
Kern, A; Heid, C; Steeb, W H; Stoop, N; Stoop, R (2008). Biophysical parameters modification could overcome essential hearing gaps. PLoS Computational Biology, 4(8):e1000161.
Wright, J; Wagner, A (2008). Exhaustive identification of steady state cycles in large stoichiometric networks. BMC Systems Biology, 2:61.
Wright, J; Wagner, A (2008). The Systems Biology Research Tool: evolvable open-source software. BMC Systems Biology, 2:55.
Smolianski, A; Haario, H; Luukka, P (2008). Numerical study of dynamics of single bubbles and bubble swarms. Applied Mathematical Modelling, 32(5):641-659.
Burri, Regula Valérie; Bellucci, Sergio (2008). Public perception of nanotechnology. Journal of Nanoparticle Research, 10(3):387-391.
Schunk, D (2008). A Markov chain Monte Carlo algorithm for multiple imputation in large surveys. Advances in Statistical Analysis (AStA), 92(1):101-114.
Bertoin, Jean; Fontbona, J; Martinez, S (2008). Asymptotic regimes for the occupancy scheme of multiplicative cascades. Stochastic Processes and their Applications, 118(9):1586-1605.
Bettendorff-Bakman, D E; Schmid, P; Lunkenheimer, P P; Niederer, P (2008). Diastolic ventricular aspiration: a mechanism supporting the rapid filling phase of the human ventricles. Journal of Theoretical Biology, 250(4):581-592.
Zumbraegel, J; Maze, G; Rosenthal, J (2008). Efficient recovering of operation tables of black box groups and rings. In: IEEE. Information Theory, 2008.ISIT 2008. Toronto: IEEE, 639-643.
Manganiello, F; Gorla, E; Rosenthal, J (2008). Spread codes and spread decoding in network coding. In: IEEE. Proceedings of the 2008 (IEEE). Toronto: IEEE Xplore, 881-885.
Fuller, M M; Wagner, A; Enquist, B J (2008). Using network analysis to characterize forest structure. Natural Resources Modeling, 21(2):225-247.
Innerebner, Markus; Böhlen, Michael; Timko, Igor (2007). A web-enabled extension of a spatio-temporal DBMS. In: GIS '07: Proceedings of the 15th annual ACM international symposium on Advances in geographic information systems, Seattle, Washington, USA, 7 November 2007 - 9 November 2007. ACM, 1-8.
Fisher, J; Piterman, N; Hajnal, A; Henzinger, T A (2007). Predictive modeling of signaling crosstalk during C. elegans vulval development. PLoS Computational Biology, 3(5):e92.
Lehmann, L; Keller, L F; Kokko, H (2007). Mate choice evolution, dominance effects, and the maintenance of genetic variation. Journal of Theoretical Biology, 244(2):282-295.
Bermudez i Badia, S; Pyk, P; Verschure, P F M J (2007). A fly-locust based neuronal control system applied to an unmanned aerial vehicle: the invertebrate neuronal principles for course stabilization, altitude control and collision avoidance. The International Journal of Robotics Research, 26(7):759-772.
Tobias, Robert; Würzebesser, Ch; Mosler, Hans-Joachim (2007). A model of prospective memory and habit phenomena calibrated with dynamic field data. In: Sklenar, Jaroslav. Modelling and simulation 2007. The European Simulation and Modelling Conference, 2007, ESM 2007 ; October 22 - 24, 2007, St. Julian's, Malta. Ghent: EUROSIS-ETI, 373-380.
Farkas, Walter; Reich, N; Schwab, C (2007). Anisotropic stable Levy copula processes-analytical and numerical aspects. Mathematical Models and Methods in Applied Sciences, 17(9):1405-1443.
Boundary element analysis. Edited by: Schanz, M; Steinbach, O (2007). Berlin: Springer.
Kurt, N (2007). Entropic repulsion for a class of Gaussian interface models in high dimensions. Stochastic Processes and their Applications, 117(1):23-34.
Wagner, A (2007). From bit to it: How a complex metabolic network transforms information into living matter. BMC Systems Biology, 1:33.
Kumar, S; Stephan, K E; Warren, J D; Friston, K J; Griffiths, T D (2007). Hierarchical processing of auditory objects in humans. PLoS Computational Biology, 3(6):e100.
Flury, M (2007). Large deviations and phase transition for random walks in random nonnegative potentials. Stochastic Processes and their Applications, 117(5):596-612.
Hu, Daning; Chen, Hsinchun; Huang, Zan; Roco, Mihail C (2007). Longitudinal study on patent citations to academic research articles in nanotechnology (1976–2004). Journal of Nanoparticle Research, 9(4):529-542.
Stoop, R; Wagner, C (2007). Neocortex's architecture optimizes computation, information transfer and synchronizability at given total connection length. International Journal of Bifurcation and Chaos in Applied Sciences and Engineering, 17(7):2257.
Wagner, C; Stoop, R (2007). Neocortex's small world of fractal coupling. International Journal of Bifurcation and Chaos in Applied Sciences and Engineering, 17(10):3409-3414.
Nikeghbali, A (2007). Non-stopping times and stopping theorems. Stochastic Processes and their Applications, 117(4):457-475.
Helmke, U; Rosenthal, J; Wang, X (2007). Pole placement results for complex symmetric and Hamiltonian transfer functions. In: Parisini, T. Proceedings of the 46th IEEE Conference on Decision and Control. New Orleans: IEEE, 3450-3453.
Weber, A P; Hahnloser, Richard H R (2007). Spike correlations in a songbird agree with a simple Markov population model. PLoS Computational Biology, 3(12):e249.
Nikeghbali, A (2006). A class of remarkable submartingales. Stochastic Processes and their Applications, 116(6):917-938.
Bertoin, Jean (2006). Different aspects of a random fragmentation model. Stochastic Processes and their Applications, 116(3):345-369.
Kelley, C A; Sridhara, D; Rosenthal, J (2006). Pseudocodeword weights for non-binary LDPC codes. In: Barg, A; et al. 2006 IEEE International Symposium on Information Theory, Vols 1-6, Proceedings. Seattle USA: Institute of Electrical and Electronics Engineers, 1379-1383.
Wu, Y; Price, B; Isenegger, D; Fischlin, A; Allgöwer, B; Nüesch, D (2006). Real-time 4D visualization of migratory insect dynamics within an integrated spatiotemporal system. Ecological Informatics, 1(2):179-187.
Barbour, A D; Gnedin, A (2006). Regenerative compositions in the case of slow variation. Stochastic Processes and their Applications, 116(7):1012-1047.
Schuhmacher, D (2005). Distance estimates for dependent superpositions of point processes. Stochastic Processes and their Applications, 115(11):1819-1837.
Repin, S; Smolianski, A (2005). Functional-type a posteriori error estimates for mixed finite element methods. Russian Journal of Numerical Analysis and Mathematical Modelling, 20(4):365-382.
Barbour, A D; Utev, S (2004). Approximating the Reed-Frost epidemic process. Stochastic Processes and their Applications, 113(2):173-197.
Barbour, A D; Pugliese, A (2004). Convergence of a structured metapopulation model to Levins's model. Journal of Mathematical Biology, 49(5):468-500.
Babuska, I; Sauter, Stefan A (2004). Efficient solution of lattice equations by the recovery method. I. Scalar elliptic problems. Computing and Visualization in Science, 7(3-4):113-119.
Bertoin, Jean (2004). On small masses in self-similar fragmentations. Stochastic Processes and their Applications, 109(1):13-22.
Kelley, C; Sridhara, D; Xu, J; Rosenthal, J (2004). Pseudocodeword weights and stopping sets. In: 2004 IEEE Symposium on Information Theory. Proceedings. Chicago: IEEE, 67.
Chipot, M; Hastings, S; Kinderlehrer, D (2004). Transport in a molecular motor system. M2AN. Mathematical Modelling and Numerical Analysis, 38(6):1011-1034.
Han, G; Rosenthal, J (2004). Upper bound analysis of diversity for unitary space time constellations. In: 2004 IEEE IInternational Symposium on Information Theory. Proceedings. Chicago: IEEE, 157.
Han, G; Rosenthal, J (2003). A numerical approach for designing unitary space time codes with large diversity product and diversity sum. In: 2003 IEEE International Symposium on Information Theory - Proceedings. Piscataway, NJ: IEEE, 178.
Feuchter, D; Heppner, I; Sauter, S A; Wittum, G (2003). Bridging the gap between geometric and algebraic multi-grid methods. Computing and Visualization in Science, 6(1):1-13.
Maze, G; Monico, C; Rosenthal, J (2002). A public key cryptosystem based on actions by semigroups. In: IEEE. ISIT: 2002 IEEE International Symposium on Information Theory. Proceedings. Piscataway, N.J.: IEEE Operations Center, 266.
Natter, Martin; Feurstein, Markus (2002). Real world performance of choice-based conjoint models. European Journal of Operational Research, 137(2):448-458.
Luchsinger, C J (2001). Approximating the long-term behaviour of a model for parasitic infection. Journal of Mathematical Biology, 42(6):555-581.
Luchsinger, C J (2001). Stochastic models of a parasitic infection, exhibiting three basic reproduction ratios. Journal of Mathematical Biology, 42(6):532-554.
Bertoin, Jean (2001). Some elements on Lévy processes. In: Shanbhag, D N; Rao, C R. Stochastic processes: theory and methods. Amsterdam: Elsevier, 117-144.
Paolella, Marc S (2001). Testing the stable Paretian assumption. Mathematical and Computer Modelling, 34(9-11):1095-1112.
Barbour, A D (2001). Topics in Poisson approximation. In: Shanbhag, D N; Rao, C R. Stochastic processes: theory and methods. Amsterdam: Elsevier, 79-115.
Mittnik, Stefan; Paolella, Marc S (2000). Conditional density and value-at-risk prediciton of Asian currency exchange rates. Journal of Forecasting, 19(4):313-333.
Smarandache, R; Gluesing-Luerssen, H; Rosenthal, J (2000). Construction results for MDS-convolutional codes. In: IEEE. Proceedings 2000 IEEE International Symposium on Information Theory. Piscataway: IEEE Service Center, 294.
Feurstein, Markus; Natter, Martin (2000). Fast high precision decision rules for valuing manufacturing flexibility. European Journal of Operational Research, 120(1):108-117.
Reutterer, Thomas; Natter, Martin (2000). Segmentation Based Competitive Analysis with MULTICLUS and Topology Representing Networks. Computers & Operations Research, 27(11-12):1227-1247.
Barbour, A D; Utev, S (1999). Compound Poisson approximation in total variation. Stochastic Processes and their Applications, 82(1):89-125.
Mittnik, Stefan; Paolella, Marc S (1999). A simple estimator for the characteristic exponent of the stable paretian distribution. Mathematical and Computer Modelling, 29(10-12):161-176.
Hruschka, Harald; Natter, Martin (1999). Comparing performance of feed-forward neural nets and k-means for cluster-based market segmentation. European Journal of Operational Research, 114(2):346-353.
Reuter, Max; Ward, Paul I; Blanckenhorn, Wolf U (1998). An ESS Treatment of the Pattern of Female Arrival at the Mating Site in the Yellow Dung FlyScathophaga stercoraria (L.). Journal of Theoretical Biology, 195(3):363-370.
Smarandache, R; Rosenthal, J (1998). Convolutional code constructions resulting in maximal or near maximal free distance. In: 1998 IEEE International Symposium on Information Theory. Proceedings. Piscataway, NJ: IEEE, 308.
Allen, B; Rosenthal, J (1998). Parity-check decoding of convolutional codes whose systems parameters have desirable algebraic properties. In: 1998 IEEE International Symposium on Information Theory. Proceedings. Piscataway, NJ: IEEE, 307.
Chipot, M; March, R; Rosati, M; Vergara-Caffarelli, G (1997). Analysis of a nonconvex problem related to signal selective smoothing. Mathematical Models and Methods in Applied Sciences, 7(3):313-328.
Rosenthal, J (1997). Some interesting problems in systems theory which are of fundamental importance in coding theory. In: Michel, A N. Proceedings of the 36th IEEE Conference on Decision and Control. Piscataway, NJ, US: IEEE, 4574-4579.
Gentz, B (1996). An almost sure central limit theorem for the overlap parameters in the Hopfield model. Stochastic Processes and their Applications, 62(2):243-262.
Barbour, A D; Chryssaphinou, Ourania; Roos, Malgorzata (1996). Compound Poisson approximation in systems reliability. Naval Research Logistics, 43(2):251-264.
Rosenthal, J (1995). First order representations for convolutional encoders. In: Bhargava, V; Pursley, M. Proceedings 1995 IEEE International Symposium on Information Theory. Piscataway, NJ: IEEE, 165.
Barbour, A D; Kafetzaki, M (1993). A host-parasite model yielding heterogeneous parasite loads. Journal of Mathematical Biology, 31(2):157-176.
Gasser, Theo; Engel, Joachim; Seifert, Burkhardt (1993). Nonparametric function estimation. In: Rao, Calyampudi Radhakrishna. Computational statistics. Amsterdam: Elsevier, 423-463.
Barbour, A D; Brown, T C (1992). Stein's method and point process approximation. Stochastic Processes and their Applications, 43(1):9-31.
Barbour, A D (1991). Modeling the overdispersion of parasite loads. Mathematical Biosciences, 107(2):249-253.
Bolthausen, E; Schmock, U (1989). On the maximum entropy principle for uniformly ergodic Markov chains. Stochastic Processes and their Applications, 33(1):1-27.
Bolthausen, E (1987). Markov process large deviations in τ-topology. Stochastic Processes and their Applications, 25(1):95-108.
Schatzmann, E; Gerrard, R; Barbour, A D (1986). Measures of Niche Overlap, I. Mathematical Medicine and Biology, 3(2):99-113.
Gerrard, R; Barbour, A D (1986). Measures of niche overlap. II. IMA J. Math. Appl. Med. Biol., 3(2):115-127.
Bolthausen, E (1984). On the asymptotic behaviour of the empirical random field of the Brownian motion. Stochastic Processes and their Applications, 16(2):199-204.
Chipot, M; Edelstein, L (1983). A mathematical theory of size distributions in tissue culture. Journal of Mathematical Biology, 16(2):115-130.
Barbour, A D (1983). Extreme values of Markov population processes. Stochastic Processes and their Applications, 14(3):297-313.
Bolthausen, E (1979). A central limit theorem for the sojourn times of strongly ergodic Markov chains. Stochastic Processes and their Applications, 9(2):217-222.
Barbour, A D (1978). A stochastic model for the transmission of bilharzia. Mathematical Biosciences, 38(3-4):303-312.
