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2021

Kohler, Philipp; Wolfensberger, Aline; Stampf, Susanne; Brönnimann, Andreas; Boggian, Katia; van Delden, Christian; Favre, Melody; Hirzel, Cédric; Khanna, Nina; Kuster, Stefan P; Manuel, Oriol; Neofytos, Dionysios; Ragozzino, Silvio; Schreiber, Peter W; Walti, Laura; Mueller, Nicolas J; Swiss Transplant Cohort Study (2021). Temporal trends, risk factors and outcomes of infections due to extended-spectrum β-lactamase producing Enterobacterales in Swiss solid organ transplant recipients between 2012 and 2018. Antimicrobial Resistance and Infection Control, 10:50.

Forster, Dominik; Qu, Zhishuai; Pitsch, Gianna; Bruni, Estelle P; Kammerlander, Barbara; Pröschold, Thomas; Sonntag, Bettina; Posch, Thomas; Stoeck, Thorsten (2021). Lake ecosystem robustness and resilience inferred from a climate-stressed protistan plankton network. Microorganisms, 9(2):549.

Kuster, Stefan P; Böni, Jürg; Kouyos, Roger D; Huber, Michael; Schmutz, Stefan; Shah, Cyril; Bischoff-Ferrari, Heike A; Distler, Oliver; Battegay, Edouard; Giovanoli, Pietro; Guckenberger, Matthias; Kohler, Malcolm; Müller, Rouven; Petry, Heidi; Ruschitzka, Frank; McGeer, Allison; Coleman, Brenda L; Sax, Hugo; Weber, Rainer; Trkola, Alexandra (2021). Absenteeism and presenteeism in healthcare workers due to respiratory illness. Infection Control and Hospital Epidemiology, 42(3):268-273.

Zosso, Cyrill U; Wiesenberg, Guido L B (2021). Methylation procedures affect PLFA results more than selected extraction parameters. Journal of Microbiological Methods, 182:106164.

LeibundGut-Landmann, Salomé; Dawson, Thomas L (2021). Editorial: Malassezia: A skin commensal yeast impacting both health and disease. Frontiers in Cellular and Infection Microbiology, 11:659219.

Hofmaenner, Daniel A; Wendel Garcia, Pedro David; Duvnjak, Branko; Chakrakodi, Bhavya; Maier, Julian D; Huber, Michael; Huder, Jon; Wolfensberger, Aline; Schreiber, Peter W; Schuepbach, Reto A; Zinkernagel, Annelies S; Buehler, Philipp K; Brugger, Silvio D (2021). Bacterial but no SARS-CoV-2 contamination after terminal disinfection of tertiary care intensive care units treating COVID-19 patients. Antimicrobial Resistance and Infection Control, 10:11.

Tayyrov, Annageldi; Schnetzler, Michèle; Gillis-Germitsch, Nina; Schnyder, Manuela (2021). Genetic diversity of the cardiopulmonary canid nematode Angiostrongylus vasorum within and between rural and urban fox populations. Infection, Genetics and Evolution, 87:104618.

Ebrahim, Shahul H; Gozzer, Ernesto; Ahmed, Yusuf; Imtiaz, Rubina; Ditekemena, John; Rahman, N M Mujeeb; Schlagenhauf, Patricia; Alqahtani, Saleh A; Memish, Ziad A (2021). COVID-19 in the least developed, fragile, and conflict-affected countries - How can the most vulnerable be protected? International Journal of Infectious Diseases, 102:381-388.

2020

Sommerstein, Rami; Marschall, Jonas; Atkinson, Andrew; Surbek, Daniel; Dominguez-Bello, Maria Gloria; Troillet, Nicolas; Widmer, Andreas F; SwissNoso (2020). Antimicrobial prophylaxis administration after umbilical cord clamping in cesarean section and the risk of surgical site infection: a cohort study with 55,901 patients. Antimicrobial Resistance and Infection Control, 9:201.

Tektas, Sibel; Thurnheer, Thomas; Eliades, Theodore; Attin, Thomas; Karygianni, Lamprini (2020). Initial Bacterial Adhesion and Biofilm Formation on Aligner Materials. Antibiotics, 9(12):908.

Becker, Katja; Aranzana-Climent, Vincent; Cao, Sha; Nilsson, Anna; Shariatgorji, Reza; Haldimann, Klara; Platzack, Björn; Hughes, Diarmaid; Andrén, Per E; Böttger, Erik C; Friberg, Lena E; Hobbie, Sven N (2020). Efficacy of EBL-1003 (apramycin) against Acinetobacter baumannii lung infections in mice. Clinical Microbiology and Infection:Epub ahead of print.

Weissberg, Dana; Böni, Jürg; Rampini, Silvana K; Kufner, Verena; Zaheri, Maryam; Schreiber, Peter W; Abela, Irene A; Huber, Michael; Sax, Hugo; Wolfensberger, Aline (2020). Does respiratory co-infection facilitate dispersal of SARS-CoV-2? investigation of a super-spreading event in an open-space office. Antimicrobial Resistance and Infection Control, 9:191.

Bonilla-Aldana, D Katterine; Aguirre-Florez, Mateo; Villamizar-Peña, Rhuvi; Gutiérrez-Ocampo, Estefanía; Henao-Martínez, Juan F; Cvetkovic-Vega, Aleksandar; Dhama, Kuldeep; Rabaan, AliA; Sah, Ranjit; Rodriguez-Morales, Alfonso J; Schlagenhauf, Patricia; Paniz-Mondolfi, Alberto (2020). After SARS-CoV-2, will H5N6 and other influenza viruses follow the pandemic path? Le Infezioni in Medicina, 28(4):475-485.

Kuratli, Jasmin; Leonard, Cory Ann; Nufer, Lisbeth; Marti, Hanna; Schoborg, Robert; Borel, Nicole (2020). Maraviroc, celastrol and azelastine alter Chlamydia trachomatis development in HeLa cells. Journal of Medical Microbiology, 69(12):1351-1366.

Schmidt, Janne S; Kuster, Stefan P; Nigg, Aurélien; Dazio, Valentina; Brilhante, Michael; Rohrbach, Helene; Bernasconi, Odette J; Büdel, Thomas; Campos-Madueno, Edgar I; Gobeli Brawand, Stefanie; Schuller, Simone; Endimiani, Andrea; Perreten, Vincent; Willi, Barbara (2020). Poor infection prevention and control standards are associated with environmental contamination with carbapenemase-producing Enterobacterales and other multidrug-resistant bacteria in Swiss companion animal clinics. Antimicrobial Resistance and Infection Control, 9(1):93.

Martínez-González, Nahara Anani; Di Gangi, Stefania; Pichierri, Giuseppe; Neuner-Jehle, Stefan; Senn, Oliver; Plate, Andreas (2020). Time Trends and Factors Associated with Antibiotic Prescribing in Swiss Primary Care (2008 to 2020). Antibiotics, 9(11):837.

Mancini, Stefano; Bodendoerfer, Elias; Kolensnik-Goldmann, Natalia; Herren, Sebastian; Röthlin, Kim; Courvalin, Patrice; Böttger, Erik C (2020). Evaluation of standardized automated rapid antimicrobial susceptibility testing of Enterobacterales-containing blood cultures: a proof-of-principle study. Journal of Antimicrobial Chemotherapy, 75(11):3218-3229.

Young, Pang Y; Mueller, Thomas F; Sis, Banu; Churchill, Thomas A; Khadaroo, Rachel G (2020). Oncostatin M Plays a Critical Role in Survival after Acute Intestinal Ischemia: Reperfusion Injury. Surgical Infections, 21(9):799-806.

Senn, Viola; Bassler, Dirk; Choudhury, Rashikh; Scholkmann, Felix; Righini-Grunder, Franziska; Vuille-dit-Bile, Raphael N; Restin, Tanja (2020). Microbial Colonization From the Fetus to Early Childhood—A Comprehensive Review. Frontiers in Cellular and Infection Microbiology, 10:573735.

Zbinden, Florian R; De Ste Croix, Megan; Grandgirard, Denis; Haigh, Richard D; Vacca, Irene; Zamudio, Roxana; Goodall, Emily C A; Stephan, Roger; Oggioni, Marco R; Leib, Stephen L (2020). Pathogenic differences of Type 1 restriction-modification allele variants in experimental Listeria monocytogenes meningitis. Frontiers in Cellular and Infection Microbiology, 10:590657.

Schweizer, Tiziano A; Shambat, Srikanth Mairpady; Haunreiter, Vanina Dengler; Mestres, Carlos A; Weber, Alberto; Maisano, Francesco; Zinkernagel, Annelies S; Hasse, Barbara (2020). Polyester vascular graft material and risk for intracavitary thoracic vascular graft infection. Emerging Infectious Diseases, 26(10):2448-2452.

Mattila, Mirjami; Somervuo, Panu; Korkeala, Hannu; Stephan, Roger; Tasara, Taurai (2020). Transcriptomic and phenotypic analyses of the Sigma B-dependent characteristics and the synergism between Sigma B and Sigma L in Listeria monocytogenes EGD-e. Microorganisms, 8(11):1644.

Meyer Sauteur, Patrick M; Pánisová, Elena; Bachmann, Lucas M; Ambroggio, Lilliam; Berger, Christoph (2020). Evaluation of IgM Lateral Flow Assay as a Screening Tool for Mycoplasma pneumoniae Infection in Childhood Pneumonia. Journal of Clinical Microbiology, 58(11):01498-20.

Sidler, Xaver; Sydler, Titus; Mateos, José Maria; Klausmann, Stefanie; Brugnera, Enrico (2020). Porcine Circovirus Type 2 Pathogenicity Alters Host’s Central Tolerance for Propagation. Pathogens, 9(10):839.

Wambui, Joseph; Eshwar, Athmanya K; Aalto-Araneda, Mariella; Pöntinen, Anna; Stevens, Marc J A; Njage, Patrick M K; Tasara, Taurai (2020). The analysis of field strains isolated from food, animal and clinical sources uncovers natural mutations in Listeria monocytogenes Nisin resistance genes. Frontiers in Microbiology, 11:549531.

Knirsch, Walter; Schuler, Stefanie Katharina; Christmann, Martin; Weber, Roland (2020). Correction to: Time‑trend population analysis of the clinical and epidemiologic effect on pediatric infective endocarditis after change of antibiotic prophylaxis guidelines. Infection, 48(5):679.

Schweiger, A; Kuster, S P; Maag, J; Züllig, S; Bertschy, S; Bortolin, E; John, G; Sax, H; Limacher, A; Atkinson, A; Schwappach, D; Marschall, J (2020). Impact of an evidence-based intervention on urinary catheter utilization, associated process indicators, and infectious and non-infectious outcomes. Journal of Hospital Infection, 106(2):364-371.

Knirsch, Walter; Schuler, Stefanie Katharina; Christmann, Martin; Weber, Roland (2020). Time-trend population analysis of the clinical and epidemiologic effect on pediatric infective endocarditis after change of antibiotic prophylaxis guidelines. Infection, 48(5):671-678.

Jang, Hyein; Chase, Hannah R; Gangiredla, Jayanthi; Grim, Christopher J; Patel, Isha R; Kothary, Mahendra H; Jackson, Scott A; Mammel, Mark K; Carter, Laurenda; Negrete, Flavia; Finkelstein, Samantha; Weinstein, Leah; Yan, QiongQiong; Iversen, Carol; Pagotto, Franco; Stephan, Roger; Lehner, Angelika; Eshwar, Athmanya K; Fanning, Séamus; Farber, Jeffery; Gopinath, Gopal R; Tall, Ben D; Pava-Ripoll, Monica (2020). Analysis of the molecular diversity among cronobacter species isolated from filth flies using targeted PCR, pan genomic DNA microarray, and whole Genome sequencing analyses. Frontiers in Microbiology, 11:561204.

Martínez-González, Nahara Anani; Keizer, Ellen; Plate, Andreas; Coenen, Samuel; Valeri, Fabio; Verbakel, Jan Yvan Jos; Rosemann, Thomas; Neuner-Jehle, Stefan; Senn, Oliver (2020). Point-of-Care C-Reactive protein testing to reduce antibiotic prescribing for respiratory tract infections in primary care: Systematic review and meta-analysis of randomised controlled trials. Antibiotics, 9(9):E610.

Scotoni, Manuela; Koch, Julian; Julian, Timothy R; Clack, Lauren; Pitol, Ana K; Wolfensberger, Aline; Grass, Robert N; Sax, Hugo (2020). Silica nanoparticles with encapsulated DNA (SPED) - a novel surrogate tracer for microbial transmission in healthcare. Antimicrobial Resistance and Infection Control, 9:152.

Stalder, Sandro; Marti, Hanna; Borel, Nicole; Sachse, Konrad; Albini, Sarah; Vogler, Barbara Renate (2020). Occurrence of Chlamydiaceae in Raptors and Crows in Switzerland. Pathogens, 9(9):724.

Wyler, J; Meyer Sauteur, P M; Zbinden, R; Berger, Christoph (2020). Improved diagnosis of cat-scratch disease with an IgM enzyme-linked immunosorbent assay for Bartonella henselae using N-lauroyl-sarcosine-insoluble protein antigen. Clinical Microbiology and Infection, 26(9):1271-1273.

Ghielmetti, Giovanni; Giger, Urs (2020). Mycobacterium avium: an emerging pathogen for dog breeds with hereditary immunodeficiencies. Current Clinical Microbiology Reports, 7(3):67-80.

Tennert, Christian; Zinovieva, Yoana; Shishkov, Kalin; Karygianni, Lamprini; Altenburger, Makus Jörg; Wierichs, Richard J; Al-Ahmad, Ali (2020). Improving the Efficiency of Photodynamic Chemotherapy in Root Canals against Enterococcus faecalis In Vitro. Antibiotics, 9(9):543.

Wambui, Joseph; Cernela, Nicole; Corti, Sabrina; Stephan, Roger (2020). Comparative genome analysis and phenotypic characterization of Clostridium gasigenes CGAS001 isolated from chilled vacuum-packed lamb meat. Frontiers in Microbiology, 11:2048.

Burchard, Thomas; Karygianni, Lamprini; Hellwig, Elmar; Wittmer, Annette; Al-Ahmad, Ali (2020). Microbial Composition of Oral Biofilms after Visible Light and Water-Filtered Infrared a Radiation (VIS+wIRA) in Combination with Indocyanine Green (ICG) as Photosensitizer. Antibiotics, 9(9):532.

Sah, Ranjit; Donovan, Suzanne; Seth-Smith, Helena M B; Bloemberg, Guido; Wüthrich, Daniel; Stephan, Roger; Kataria, Sushila; Kumar, Mahadevan; Singla, Sonam; Deswal, Vikas; Kaur, Amarjeet; Neumayr, Andreas; Hinic, Vladimira; Egli, Adrian; Kuenzli, Esther (2020). A novel lineage of Ceftriaxone-resistant Salmonella Typhi from India that is closely related to XDR S. Typhi found in Pakistan. Clinical Infectious Diseases, 71(5):1327-1330.

Daley, Charles L; Iaccarino, Jonathan M; Lange, Christoph; Cambau, Emmanuelle; Wallace Jr, Richard J; Andrejak, Claire; Böttger, Erik C; Brozek, Jan; Griffith, David E; Guglielmetti, Lorenzo; Huitt, Gwen A; Knight, Shandra L; Leitman, Philip; Marras, Theodore K; Olivier, Kenneth N; Santin, Miguel; Stout, Jason E; Tortoli, Enrico; van Ingen, Jakko; Wagner, Dirk; Winthrop, Kevin L (2020). Treatment of Nontuberculous Mycobacterial Pulmonary Disease: An Official ATS/ERS/ESCMID/IDSA Clinical Practice Guideline. Clinical Infectious Diseases, 71(4):905-913.

Daley, Charles L; Iaccarino, Jonathan M; Lange, Christoph; Cambau, Emmanuelle; Wallace, Richard J; Andrejak, Claire; Böttger, Erik C; Brozek, Jan; Griffith, David E; Guglielmetti, Lorenzo; Huitt, Gwen A; Knight, Shandra L; Leitman, Philip; Marras, Theodore K; Olivier, Kenneth N; Santin, Miguel; Stout, Jason E; Tortoli, Enrico; van Ingen, Jakko; Wagner, Dirk; Winthrop, Kevin L (2020). Treatment of Nontuberculous Mycobacterial Pulmonary Disease: An Official ATS/ERS/ESCMID/IDSA Clinical Practice Guideline: Executive Summary. Clinical Infectious Diseases, 71(4):e1-e36.

Vach, Kirstin; Al-Ahmad, Ali; Anderson, Annette; Woelber, Johan Peter; Karygianni, Lamprini; Wittmer, Annette; Hellwig, Elmar (2020). Analysing the Relationship between Nutrition and the Microbial Composition of the Oral Biofilm-Insights from the Analysis of Individual Variability. Antibiotics, 9(8):479.

Karygianni, L; Ren, Z; Koo, H; Thurnheer, T (2020). Biofilm Matrixome: Extracellular Components in Structured Microbial Communities. Trends in Microbiology, 28(8):668-681.

Aumayer, Helen; Leonard, Cory Ann; Pesch, Theresa; Prähauser, Barbara; Wunderlin, Sabina; Guscetti, Franco; Borel, Nicole (2020). Chlamydia suis is associated with intestinal NF-κB activation in experimentally infected gnotobiotic piglets. FEMS Pathogens and Disease, 78(6):ftaa040.

Gu, Shaohua; Wei, Zhong; Shao, Zhengying; Friman, Ville-Petri; Cao, Kehao; Yang, Tianjie; Kramer, Jos; Wang, Xiaofang; Li, Mei; Mei, Xinlan; Xu, Yangchun; Shen, Qirong; Kümmerli, Rolf; Jousset, Alexandre (2020). Competition for iron drives phytopathogen control by natural rhizosphere microbiomes. Nature Microbiology, 5(8):1002-1010.

Guggisberg, Annina R; Alvarez Rojas, Cristian A; Kronenberg, Philipp A; Miranda, Nadia; Deplazes, Peter (2020). A sensitive, one-way sequential sieving method to isolate helminths’ eggs and protozoal oocysts from tettuce for genetic identification. Pathogens, 9(8):E624.

The Respond Study Group (2020). How to RESPOND to Modern Challenges for People Living with HIV: A Profile for a New Cohort Consortium. Microorganisms, 8(8):1164.

Muchaamba, Francis; Eshwar, Athmanya K; von Ah, Ueli; Stevens, Marc J A; Tasara, Taurai (2020). Evolution of Listeria monocytogenes during a persistent human prosthetic hip joint infection. Frontiers in Microbiology, 11:1726.

Meyer Sauteur, Patrick M (2020). Challenges and Progress Toward Determining Pneumonia Etiology. Clinical Infectious Diseases, 71(3):514-516.

Vitale, Alessandra; Pessi, Gabriella; Urfer, Matthias; Locher, Hans H; Zerbe, Katja; Obrecht, Daniel; Robinson, John A; Eberl, Leo (2020). Identification of genes required for resistance to peptidomimetic antibiotics by transposon sequencing. Frontiers in Microbiology, 11:1681.

Felten, Sandra; Klein-Richers, Ute; Hofmann-Lehmann, Regina; Bergmann, Michèle; Unterer, Stefan; Leutenegger, Christian M; Hartmann, Katrin (2020). Correlation of feline coronavirus shedding in feces with coronavirus antibody titer. Pathogens, 9(8):E598.

Habjanič, Jelena; Mathew, Anugraha; Eberl, Leo; Freisinger, Eva (2020). Deciphering the Enigmatic Function of Pseudomonas Metallothioneins. Frontiers in Microbiology, 11:1709.

Liu, Yilei; Bellich, Barbara; Hug, Sebastian; Eberl, Leo; Cescutti, Paola; Pessi, Gabriella (2020). The exopolysaccharide Cepacian plays a role in the establishment of the Paraburkholderia phymatum – Phaseolus vulgaris symbiosis. Frontiers in Microbiology, 11:1600.

Emond-Rheault, Jean-Guillaume; Hamel, Jérémie; Jeukens, Julie; Freschi, Luca; Kukavica-Ibrulj, Irena; Boyle, Brian; Tamber, Sandeep; Malo, Danielle; Franz, Eelco; Burnett, Elton; Daigle, France; Arya, Gitanjali; Sanderson, Kenneth; Wiedmann, Martin; Slawson, Robin M; Weadge, Joel T; Stephan, Roger; Bekal, Sadjia; Gruenheid, Samantha; Goodridge, Lawrence D; Levesque, Roger C (2020). The Salmonella enterica plasmidome as a reservoir of antibiotic resistance. Microorganisms, 8(7):1016.

Sommerstein, Rami; Fux, Christoph Andreas; Vuichard-Gysin, Danielle; Abbas, Mohamed; Marschall, Jonas; Balmelli, Carlo; Troillet, Nicolas; Harbarth, Stephan; Schlegel, Matthias; Widmer, Andreas; SwissNoso (2020). Risk of SARS-CoV-2 transmission by aerosols, the rational use of masks, and protection of healthcare workers from COVID-19. Antimicrobial Resistance and Infection Control, 9:100.

Sendi, P; Kaempfen, A; Uçkay, I; Meier, R (2020). Bone and joint infections of the hand. Clinical Microbiology and Infection, 26(7):848-856.

Hage, René; Steinack, Carolin; Schuurmans, Macé M (2020). Calcineurin inhibitors revisited: A new paradigm for COVID-19? Brazilian Journal of Infectious Diseases, 24(4):365-367.

Kaelin, M B; Kuster, S P; Hasse, B; Schulthess, B; Imkamp, F; Halbe, M; Sander, P; Sax, H; Schreiber, P W (2020). Diversity of nontuberculous mycobacteria in Heater-Cooler Devices - results from prospective surveillance. Journal of Hospital Infection, 105(3):480-485.

Courlet, Perrine; Livio, Françoise; Alves Saldanha, Susana; Scherrer, Alexandra; Battegay, Manuel; Cavassini, Matthias; Stoeckle, Marcel; Decosterd, Laurent Arthur; Marzolini, Catia; Swiss HIV Cohort Study (2020). Real-life management of drug-drug interactions between antiretrovirals and statins. Journal of Antimicrobial Chemotherapy, 75(7):1972-1980.

Bodendoerfer, Elias; Marchesi, Martina; Imkamp, Frank; Courvalin, Patrice; Böttger, Erik C; Mancini, Stefano (2020). Co-occurrence of aminoglycoside and β-lactam resistance mechanisms in aminoglycoside- non-susceptible Escherichia coli isolated in the Zurich area, Switzerland. International Journal of Antimicrobial Agents, 56(1):106019.

Malbon, Alexandra J; Russo, Giancarlo; Burgener, Carole; Barker, Emi N; Meli, Marina L; Tasker, Séverine; Kipar, Anja (2020). The effect of natural Feline Coronavirus infection on the host immune response: a whole-transcriptome analysis of the mesenteric lymph nodes in cats with and without feline infectious peritonitis. Pathogens, 9(7):524.

Fritschi, Janine; Marti, Hanna; Seth-Smith, Helena M B; Aeby, Sébastien; Greub, Gilbert; Meli, Marina L; Hofmann-Lehmann, Regina; Mühldorfer, Kristin; Stokar-Regenscheit, Nadine; Wiederkehr, Danja; Pilo, Paola; Van Den Broek, Peggy Rüegg-; Borel, Nicole (2020). Prevalence and phylogeny of Chlamydiae and hemotropic mycoplasma species in captive and free-living bats. BMC Microbiology, 20(1):182.

Etter, Danai; Corti, Sabrina; Spirig, Simona; Cernela, Nicole; Stephan, Roger; Johler, Sophia (2020). Staphylococcus aureus population structure and genomic profiles in asymptomatic carriers in Switzerland. Frontiers in Microbiology, 11:1289.

Kuca, Thibaud; Passler, Thomas; Newcomer, Benjamin W; Neill, John D; Galik, Patricia K; Riddell, Kay P; Zhang, Yijing; Bayles, Darrell O; Walz, Paul H (2020). Changes introduced in the open reading frame of bovine viral diarrhea virus during serial infection of pregnant swine. Frontiers in Microbiology, 11:1138.

Greppi, Anna; Asare, Paul Tetteh; Schwab, Clarissa; Zemp, Niklaus; Stephan, Roger; Lacroix, Christophe (2020). Isolation and comparative genomic analysis of reuterin-producing Lactobacillus reuteri from the chicken gastrointestinal tract. Frontiers in Microbiology, 11:1166.

Mancini, Stefano; Röthlin, Kim; Bodendoerfer, Elias; Herren, Sebastian; Kolesnik-Goldmann, Natalia; Courvalin, Patrice; Zbinden, Reinhard; Böttger, Erik C (2020). Tentative breakpoints and areas of technical uncertainty for early reading automated disc diffusion for Enterobacterales. Journal of Antimicrobial Chemotherapy, 75(6):1495-1505.

Hochstrasser, Ramon; Hilbi, Hubert (2020). Legionella quorum sensing meets cyclic-di-GMP signaling. Current Opinion in Microbiology, 55(Juni):9-16.

Duguet, Thomas B; Soichot, Julien; Kuzyakiv, Rostyslav; Malmström, Lars; Tritten, Lucienne (2020). Extracellular vesicle-contained microRNA of C. elegans as a tool to decipher the molecular basis of nematode parasitism. Frontiers in Cellular and Infection Microbiology, 10:217.

Jiménez-Meléndez, Alejandro; Ramakrishnan, Chandra; Hehl, Adrian B; Russo, Giancarlo; Álvarez-García, Gema (2020). RNA-seq analyses reveal that endothelial activation and fibrosis are induced early and progressively by Besnoitia besnoiti host cell invasion and proliferation. Frontiers in Cellular and Infection Microbiology, 10:218.

Füri, Julia; Widmer, Andreas; Bornand, Delia; Berger, Christoph; Huttner, Benedikt; Bielicki, Julia Anna (2020). The potential negative impact of antibiotic pack on antibiotic stewardship in primary care in Switzerland: a modelling study. Antimicrobial Resistance and Infection Control, 9:60.

Lukic, Dejana; Karygianni, Lamprini; Flury, Manuela; Attin, Thomas; Thurnheer, Thomas. Endodontic-Like Oral Biofilms as Models for Multispecies Interactions in Endodontic Diseases. 2020, University of Zurich, Faculty of Medicine.

Sparber, Florian; Ruchti, Fiorella; LeibundGut-Landmann, Salomé (2020). Host Immunity to Malassezia in Health and Disease. Frontiers in Cellular and Infection Microbiology, 10:198.

Bluemel, Sena; Wang, Lirui; Kuelbs, Claire; Moncera, Kelvin; Torralba, Manolito; Singh, Harinder; Fouts, Derrick E; Schnabl, Bernd (2020). Intestinal and hepatic microbiota changes associated with chronic ethanol administration in mice. Gut Microbes, 11(3):265-275.

Abbas, M; Rossel, A; de Kraker, M E A; von Dach, E; Marti, C; Emonet, S; Harbarth, S; Kaiser, L; Uçkay, I (2020). Association between treatment duration and mortality or relapse in adult patients with Staphylococcus aureus bacteraemia: a retrospective cohort study. Clinical Microbiology and Infection, 26(5):626-631.

Sahrmann, Philipp; Gilli, Fabienne; Wiedemeier, Daniel B; Attin, Thomas; Schmidlin, Patrick R; Karygianni, Lamprini (2020). The Microbiome of Peri-Implantitis: A Systematic Review and Meta-Analysis. Microorganisms, 8(5):661.

Sax, Hugo; Schreiber, Peter W; Clack, Lauren; Ratz, David; Saint, Sanjay; Greene, M Todd; Kuster, Stefan P (2020). Preventing healthcare-associated infection in Switzerland: Results of a national survey. Infection Control and Hospital Epidemiology, 41(5):597-600.

De Vrieze, Mout; Varadarajan, Adithi R; Schneeberger, Kerstin; Bailly, Aurélien; Rohr, Rudolf P; Ahrens, Christian H; Weisskopf, Laure (2020). Linking comparative genomics of nine potato-associated Pseudomonas isolates with their differing biocontrol potential against late blight. Frontiers in Microbiology, 11:857.

Meerwein, Milton; Tarnutzer, Andrea; Böni, Michelle; Van Bambeke, Françoise; Hombach, Michael; Zinkernagel, Annelies S (2020). Increased azithromycin susceptibility of multidrug-resistant gram-negative bacteria on RPMI-1640 agar assessed by disk diffusion testing. Antibiotics, 9(5):218.

Harro, Janette M; Shirtliff, Mark E; Arnold, William; Kofonow, Jennifer M; Dammling, Chad; Achermann, Yvonne; Brao, Kristen; Parvizi, Javad; Leid, Jeff G (2020). Development of a novel and rapid antibody-based diagnostic for chronic staphylococcus aureus Infections based on biofilm antigens. Journal of Clinical Microbiology, 58(5):e01414-e01419.

Forconi, Catherine S; Oduor, Cliff I; Oluoch, Peter O; Ong'echa, John M; Münz, Christian; Bailey, Jeffrey A; Moormann, Ann M (2020). A New Hope for CD56negCD16pos NK Cells as Unconventional Cytotoxic Mediators: An Adaptation to Chronic Diseases. Frontiers in Cellular and Infection Microbiology, 10:162.

Unterweger, Christine; Schwarz, Lukas; Jelocnik, Martina; Borel, Nicole; Brunthaler, René; Inic-Kanada, Aleksandra; Marti, Hanna (2020). Isolation of tetracycline-resistant Chlamydia suis from a pig herd affected by reproductive disorders and conjunctivitis. Antibiotics, 9(4):E187.

Ertuğrul, Bülent; Uçkay, İlker; Schöni, Madlaina; Peter-Riesch, Bettina; Lipsky, Benjamin A (2020). Management of diabetic foot infections in the light of recent literature and new international guidelines. Expert Review of Anti-Infective Therapy, 18(4):293-305.

Buckrell, Steven; Coleman, Brenda L; McNeil, Shelly A; Katz, Kevin; Muller, Matthew P; Simor, Andrew; Loeb, Mark; Powis, Jeff; Kuster, Stefan P; Di Bella, Julia M; Coleman, Kristy K L; Drews, Steven J; Kohler, Philipp; McGeer, Allison (2020). Sources of viral respiratory infections in Canadian acute care hospital healthcare personnel. Journal of Hospital Infection, 104(4):513-521.

Zhang, Xiaozhou; Arnold, Isabelle C; Müller, Anne (2020). Mechanisms of persistence, innate immune activation and immunomodulation by the gastric pathogen Helicobacter pylori. Current Opinion in Microbiology, 54:1-10.

Krauss, Jochen; Vikuk, Veronika; Young, Carolyn A; Krischke, Markus; Mueller, Martin J; Baerenfaller, Katja (2020). Epichloë Endophyte Infection Rates and Alkaloid Content in Commercially Available Grass Seed Mixtures in Europe. Microorganisms, 8(4):498.

Mischlinger, Johannes; Rönnberg, Caroline; Álvarez-Martínez, Míriam J; Bühler, Silja; Paul, Małgorzata; Schlagenhauf, Patricia; Petersen, Eskild; Ramharter, Michael (2020). Imported Malaria in Countries where Malaria Is Not Endemic: a Comparison of Semi-immune and Nonimmune Travelers. Clinical Microbiology Reviews, 33(2):e00104.

Mischlinger, Johannes; Muranaka, Riko; Bühler, Silja; Ramharter, Michael (2020). Measles, vaccines and types of perception bias in public debates. Clinical Infectious Diseases, 70(6):1258-1259.

Endimiani, Andrea; Brilhante, Michael; Bernasconi, Odette J; Perreten, Vincent; Schmidt, Janne S; Dazio, Valentina; Nigg, Aurélien; Gobeli Brawand, Stefanie; Kuster, Stefan P; Schuller, Simone; Willi, Barbara (2020). Employees of Swiss veterinary clinics colonized with epidemic clones of carbapenemase-producing Escherichia coli. Journal of Antimicrobial Chemotherapy, 75(3):766-768.

Sommerstein, Rami; Hasse, Barbara; Widmer, Andreas F (2020). Invasive Mycobacterium chimaera infections and heater-cooler devices in cardiac surgery. Emerging Infectious Diseases, 26(3):632-633.

Wist, Valerie; Morach, Marina; Schneeberger, Marianne; Cernela, Nicole; Stevens, Marc J A; Zurfluh, Katrin; Stephan, Roger; Nüesch-Inderbinen, Magdalena (2020). Phenotypic and genotypic traits of vancomycin-resistant enterococci from healthy food-producing animals. Microorganisms, 8(2):261.

Kovari, Helen; Calmy, Alexandra; Doco-Lecompte, Thanh; Nkoulou, René; Marzel, Alex; Weber, Rainer; Kaufmann, Philipp A; Buechel, Ronny R; Ledergerber, Bruno; Tarr, Philip E; Swiss HIV Cohort Study (2020). Antiretroviral Drugs Associated with Subclinical Coronary Artery Disease in the Swiss HIV Cohort Study. Clinical Infectious Diseases, 70(5):884-889.

Dietrich, Léna G; Barceló, Catalina; Thorball, Christian W; Ryom, Lene; Burkhalter, Felix; Hasse, Barbara; Furrer, Hansjakob; Weisser, Maja; Steffen, Ana; Bernasconi, Enos; Cavassini, Matthias; de Seigneux, Sophie; Csajka, Chantal; Fellay, Jacques; Ledergerber, Bruno; Tarr, Philip E; Swiss HIV Cohort Study (2020). Contribution of genetic background and clinical D:A:D risk score to chronic kidney disease in Swiss HIV-positive persons with normal baseline estimated glomerular filtration rate. Clinical Infectious Diseases, 70(5):890-897.

Jang, Hyein; Gopinath, Gopal R; Eshwar, Athmanya; Srikumar, Shabarinath; Nguyen, Scott; Gangiredla, Jayanthi; Patel, Isha R; Finkelstein, Samantha B; Negrete, Flavia; Woo, JungHa; Lee, YouYoung; Fanning, Séamus; Stephan, Roger; Tall, Ben D; Lehner, Angelika (2020). The secretion of toxins and other exoproteins of cronobacter: role in virulence, adaption, and persistence. Microorganisms, 8(2):229.

Bertisch, Barbara; Brezzi, Matteo; Negro, Francesco; Müllhaupt, Beat; Ottiger, Cornelia; Künzler-Heule, Patrizia; Schmid, Patrick; Giudici, Fabio; Clerc, Olivier; Moriggia, Alberto; Roelens, Maroussia; Marinucci, Francesco; Zehnder, Cinzia; Moradpour, Darius; Keiser, Olivia; Swiss Hepatitis C Cohort Study (2020). Very low hepatitis C viral loads in treatment-naïve persons: do they compromise hepatitis C virus antigen testing? Clinical Infectious Diseases, 70(4):653-659.

Plate, A; Weichselbaumer, V; Schüpbach, R; Fucentese, S F; Berli, M; Hüllner, M; Achermann, Y (2020). Diagnostic accuracy of $^{99m}$Tc-antigranulocyte SPECT/CT in patients with osteomyelitis and orthopaedic device-related infections: A retrospective analysis. International Journal of Infectious Diseases, 91:79-86.

Redli, Patrick M; Wanzenried, Adrian; Huder, Jon B; Berger, Christoph; Berlinger, Livia; Capaul, Riccarda; Böni, Jürg; Zbinden, Andrea (2020). Evaluation of the RIDA®GENE RT-PCR assays for detection of sapovirus, astrovirus, adenovirus, and rotavirus in stool samples of adults in Switzerland. Diagnostic Microbiology and Infectious Disease, 96(2):114924.

Rezzoagli, Chiara; Granato, Elisa T; Kümmerli, Rolf (2020). Harnessing bacterial interactions to manage infections: a review on the opportunistic pathogen Pseudomonas aeruginosa as a case example. Journal of Medical Microbiology, 69(2):147-161.

Dušek, Davorka; Vince, Adriana; Kurelac, Ivan; Papić, Neven; Višković, Klaudija; Deplazes, Peter; Beck, Relja (2020). Human Alveolar Echinococcosis, Croatia. Emerging Infectious Diseases, 26(2):364-366.

Winter, S; Meyer-Lindenberg, Andrea; Wolf, G; Reese, S; Nolff, M C (2020). In vitro evaluation of the decontamination effect of cold atmospheric argon plasma on selected bacteria frequently encountered in small animal bite injuries. Journal of Microbiological Methods, 169:105728.

Hasse, Barbara; Hannan, Margaret M; Keller, Peter M; Maurer, Florian P; Sommerstein, Rami; Mertz, Dominik; et al; Bettex, Dominique; Schreiber, Peter W; Zweifel, Sandrine A; Sander, P; Schulthess, B (2020). International Society of Cardiovascular Infectious Diseases Guidelines for the Diagnosis, Treatment and Prevention of Disseminated Mycobacterium chimaera Infection Following Cardiac Surgery with Cardiopulmonary Bypass. Journal of Hospital Infection, 104(2):214-235.

Hanna, Nabil; Kicka, Sébastien; Chiriano, Gianpaolo; Harrison, Christopher; Sakouhi, Hajer Ouertatani; Trofimov, Valentin; Kranjc, Agata; Nitschke, Jahn; Pagni, Marco; Cosson, Pierre; Hilbi, Hubert; Scapozza, Leonardo; Soldati, Thierry (2020). Identification of Anti-Mycobacterium and Anti-Legionella Compounds With Potential Distinctive Structural Scaffolds From an HD-PBL Using Phenotypic Screens in Amoebae Host Models. Frontiers in Microbiology, 11:266.

Julian, Kathleen G; Crook, Tonya; Curley, Eugene; Appenheimer, A Ben; Paules, Catharine I; Hasse, Barbara; Diekema, Daniel J; Daley, Charles L; de Sanctis, Jorgelina; Hellinger, Walter C; Levin, Adrah; McSherry, George; Freer, Carol; Whitener, Cynthia J (2020). Long-term follow-up of post-cardiac surgery Mycobacterium chimaera infections: A 5-center case series. Journal of Infection, 80(2):197-203.

Salazar-Vizcaya, Luisa; Kusejko, Katharina; Schmidt, Axel J; Carrillo-Montoya, Germán; Nicca, Dunja; Wandeler, Gilles; Braun, Dominique L; Fehr, Jan; Darling, Katharine E A; Bernasconi, Enos; Schmid, Patrick; Günthard, Huldrych F; Kouyos, Roger D; Rauch, Andri (2020). Clusters of sexual behaviour in HIV-positive men who have sex with men reveal highly dissimilar time trends. Clinical Infectious Diseases, 70(3):416-424.

Asare, Paul Tetteh; Zurfluh, Katrin; Greppi, Anna; Lynch, Denise; Schwab, Clarissa; Stephan, Roger; Lacroix, Christophe (2020). Reuterin demonstrates potent antimicrobial activity against a broad panel of human and poultry meat Campylobacter spp. isolates. Microorganisms, 8(1):78.

Abela, Irene A; Scherrer, Alexandra U; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Perreau, Matthieu; Hirsch, Hans H; Furrer, Hansjakob; Calmy, Alexandra; Schmid, Patrick; Cavassini, Matthias; Bernasconi, Enos; Günthard, Huldrych F; Swiss HIV Cohort Study (2020). Emergence of drug resistance in the Swiss HIV Cohort Study under potent antiretroviral therapy is observed in socially disadvantaged patients. Clinical Infectious Diseases, 70(2):297-303.

Veronesi, Eva; Darpel, Karin; Gubbins, Simon; Batten, Carrie; Nomikou, Kyriaki; Mertens, Peter; Carpenter, Simon (2020). Diversity of transmission outcomes following co-infection of sheep with strains of bluetongue virus serotype 1 and 8. Microorganisms, 8(6):851.

Kappler, Katharina; Lasanajak, Yi; Smith, David F; Opitz, Lennart; Hennet, Thierry (2020). Increased Antibody Response to Fucosylated Oligosaccharides and Fucose-Carrying Bacteroides Species in Crohn's Disease. Frontiers in Microbiology, 11:1553.

Meerwein, Milton. Increased Azithromycin Susceptibility of Multidrug-Resistant Gram-Negative Bacteria on RPMI-1640 Agar Assessed by Disk Diffusion Testing. 2020, University of Zurich, Faculty of Medicine.

Häffner, Nicola; Bär, Julian; Dengler Haunreiter, Vanina; Mairpady Shambat, Srikanth; Seidl, Kati; Crosby, Heidi A; Horswill, Alexander R; Zinkernagel, Annelies S (2020). Intracellular environment and agr system affect colony size heterogeneity of Staphylococcus aureus. Frontiers in Microbiology, 11:1415.

Lamrabet, Otmane; Melotti, Astrid; Burdet, Frédéric; Hanna, Nabil; Perrin, Jackie; Nitschke, Jahn; Pagni, Marco; Hilbi, Hubert; Soldati, Thierry; Cosson, Pierre (2020). Transcriptional Responses of Dictyostelium discoideum Exposed to Different Classes of Bacteria. Frontiers in Microbiology, 11:410.

2019

Kulik, Eva M; Thurnheer, Thomas; Karygianni, Lamprini; Walter, Clemens; Sculean, Anton; Eick, Sigrun (2019). Antibiotic Susceptibility Patterns of Aggregatibacter actinomycetemcomitans and Porphyromonas gingivalis Strains from Different Decades. Antibiotics, 8(4):253.

Lenherr Ramos, Laura; Weber, Rainer; Sax, Hugo; Giovanoli, Pietro; Kuster, Stefan P (2019). A comprehensive unit-based safety program for the reduction of surgical site infections in plastic surgery and hand surgery. Infection Control and Hospital Epidemiology, 40(12):1367-1373.

Plate, Andreas; Kronenberg, Andreas; Risch, Martin; Mueller, Yolanda; Di Gangi, Stefania; Rosemann, Thomas; Senn, Oliver (2019). Active surveillance of antibiotic resistance patterns in urinary tract infections in primary care in Switzerland. Infection, 47(6):1027-1035.

Kuenzli, Esther; Büdel, Thomas; Bernasconi, Odette J; Schlagenhauf, Patricia; Florek, Peter; Gültekin, Nejla; Hatz, Christoph; Endimiani, Andrea (2019). Intestinal colonisation with multidrug-resistant Enterobacteriaceae: Screening of Swiss military deployed to Kosovo. Journal of Global Antimicrobial Resistance, 19:93-95.

Breckwoldt, Jan; Knecht, Monika; Massée, Ralph; Flach, Barbara; Hofmann-Huber, Caroline; Kaap-Fröhlich, Sylvia; Witt, Claudia M; Aeberhard, Ruth; Sax, Hugo (2019). Operating room technician trainees teach medical students - an inter-professional peer teaching approach for infection prevention strategies in the operation room. Antimicrobial Resistance and Infection Control, 8(1):75.

Kavagutti, Vinicius S; Andrei, Adrian-Ştefan; Mehrshad, Maliheh; Salcher, Michaela M; Ghai, Rohit (2019). Phage-centric ecological interactions in aquatic ecosystems revealed through ultra-deep metagenomics. Microbiome, 7:135.

Wolfensberger, Aline; Kuster, Stefan P; Marchesi, Martina; Zbinden, Reinhard; Hombach, Michael (2019). The effect of varying multidrug-resistence (MDR) definitions on rates of MDR gram-negative rods. Antimicrobial Resistance and Infection Control, 8:193.

Clack, Lauren; Stühlinger, Manuel; Meier, Marie-Theres; Wolfensberger, Aline; Sax, Hugo (2019). User-centred participatory design of visual cues for isolation precautions. Antimicrobial Resistance and Infection Control, 8:179.

Wambui, Joseph; Njage, Patrick Murigu Kamau; Tasara, Taurai; Buys, Elna Maria (2019). Meta-analysis and meta-regression indicate dynamic prevalence and moderators of foodborne pathogens in African indigenous fermented milk. Microorganisms, 7(11):563.

Mody, Lona; Washer, Laraine L; Kaye, Keith S; Gibson, Kristen; Saint, Sanjay; Reyes, Katherine; Cassone, Marco; Mantey, Julia; Cao, Jie; Altamimi, Sarah; Perri, Mary; Sax, Hugo; Chopra, Vineet; Zervos, Marcus (2019). Multidrug-resistant organisms in hospitals: what Is on patient hands and in their rooms? Clinical Infectious Diseases, 69(11):1837-1844.

Wolfensberger, A; Jakob, W; Faes Hesse, M; Kuster, S P; Meier, A H; Schreiber, P W; Clack, L; Sax, H (2019). Development and validation of a semi-automated surveillance system-lowering the fruit for non-ventilator-associated hospital-acquired pneumonia (nvHAP) prevention. Clinical Microbiology and Infection, 25(11):1428.e7-1428.e13.

Mancini, Stefano; Keller, Peter M; Greiner, Michael; Bruderer, Vera; Imkamp, Frank (2019). Detection of NDM-19, a novel variant of the New Delhi metallo-β-lactamase with increased carbapenemase activity under zinc-limited conditions, in Switzerland. Diagnostic Microbiology and Infectious Disease, 95(3):114851.

Horlbog, Jule Anna; Stevens, Marc J A; Stephan, Roger; Guldimann, Claudia (2019). Global transcriptional response of three highly acid-tolerant field strains of listeria monocytogenes to HCl stress. Microorganisms, 7(10):455.

Asner, Sandra A; Agyeman, Philipp K A; Gradoux, Eugénie; Posfay-Barbe, Klara M; Heininger, Ulrich; Giannoni, Eric; Crisinel, Pierre A; Stocker, Martin; Bernhard-Stirnemann, Sara; Niederer-Loher, Anita; Kahlert, Christian R; Hasters, Paul; Relly, Christa; Baer, Walter; Aebi, Christoph; Schlapbach, Luregn J; Berger, Christoph (2019). Burden of Streptococcus pneumoniae sepsis in children after introduction of pneumococcal conjugate vaccines - a prospective population-based cohort study. Clinical Infectious Diseases, 69(9):1574-1580.

Braun, Dominique L; Turk, Teja; Tschumi, Fabian; Grube, Christina; Hampel, Benjamin; Depmeier, Carsten; Schreiber, Peter W; Brugger, Silvio D; Greiner, Michael; Steffens, Daniela; de Torrenté-Bayard, Cornelia; Courlet, Perrine; Neumann, Kathrin; Kuster, Herbert; Flepp, Markus; Bertisch, Barbara; Decosterd, Laurent; Böni, Jürg; Metzner, Karin J; Kouyos, Roger D; Günthard, Huldrych F (2019). Non-inferiority of simplified dolutegravir monotherapy compared to continued combination antiretroviral therapy that was initiated during primary HIV infection: a randomized, controlled, multi-site, open-label, non-inferiority trial. Clinical Infectious Diseases, 69(9):1489-1497.

Pohlmann, Anne; Hoffmann, Donata; Grund, Christian; Koethe, Susanne; Hüssy, Daniela; Meier, Simone Martina; King, Jacqueline; Schinköthe, Jan; Ulrich, Reiner; Harder, Timm; Beer, Martin (2019). Genetic characterization and zoonotic potential of highly pathogenic Avian influenza virus A(H5N6/H5N5), Germany, 2017–2018. Emerging Infectious Diseases, 25(10):1973-1976.

Büdel, Thomas; Kuenzli, Esther; Clément, Mathieu; Bernasconi, Odette J; Fehr, Jan; Mohammed, Ali Haji; Hassan, Nadir Khatib; Zinsstag, Jakob; Hatz, Christoph; Endimiani, Andrea (2019). Polyclonal gut colonization with extended-spectrum cephalosporin- and/or colistin-resistant Enterobacteriaceae: a normal status for hotel employees on the island of Zanzibar, Tanzania. Journal of Antimicrobial Chemotherapy, 74(10):2880-2890.

Wagner, Karoline; Preiswerk, Benjamin; Keller, Peter M; Schulthess, Bettina (2019). Defining threshold values in microscopic examination and qPCR for optimal performance of line probe assays for resistance detection in Mycobacterium tuberculosis complex. Diagnostic Microbiology and Infectious Disease, 95(2):159-161.

Schlagenhauf, Patricia; Patel, Dipti (2019). «Who» «Where» and «Why» moves to checkmate imported malaria? Clinical Infectious Diseases, 69(7):1163-1164.

Waibel, Felix W A; Uçkay, Ilker; Sairanen, Kati; Waibel, Lorenz; Berli, Martin C; Böni, Thomas; Gariani, Karim; Lipsky, Benjamin A (2019). Diabetic calcaneal osteomyelitis. Le Infezioni in Medicina, 27(3):225-238.

Barcelo, Catalina; Aouri, Manel; Courlet, Perrine; Guidi, Monia; Braun, Dominique L; Günthard, Huldrych F; Piso, Rein J; Cavassini, Matthias; Buclin, Thierry; Decosterd, Laurent A; Csajka, Chantal; Swiss HIV Cohort Study (2019). Population pharmacokinetics of dolutegravir: influence of drug-drug interactions in a real-life setting. Journal of Antimicrobial Chemotherapy, 74(9):2690-2697.

Schreiber, Peter W; Kufner, Verena; Hübel, Kerstin; Schmutz, Stefan; Zagordi, Osvaldo; Kaur, Amandeep; Bayard, Cornelia; Greiner, Michael; Zbinden, Andrea; Capaul, Riccarda; Böni, Jürg; Hirsch, Hans H; Mueller, Thomas F; Mueller, Nicolas J; Trkola, Alexandra; Huber, Michael (2019). Metagenomic virome sequencing in living donor-recipient kidney transplant pairs revealed JC Polyomavirus transmission. Clinical Infectious Diseases, 69(6):987-994.

Leong, Cheryl; Schmid, Bettina; Toi, Min Jet; Wang, Joyce; Irudayaswamy, Antony Sagayaraj; Goh, Joleen Peh Zhen; Bosshard, Philipp P; Glatz, Martin; Dawson, Thomas L (2019). Geographical and Ethnic Differences Influence Culturable Commensal Yeast Diversity on Healthy Skin. Frontiers in Microbiology, 10:1891.

Bogdanovic, Jasmina; Petralito, Serge; Passerini, Simone; Sax, Hugo; Manser, Tanja; Clack, Lauren (2019). Exploring healthcare providers' mental models of the infection prevention "patient zone" - a concept mapping study. Antimicrobial Resistance and Infection Control, 8:138.

Courlet, Perrine; Decosterd, Laurent Arthur; Brown, Jennifer Anne; Alves Saldanha, Susana; Marzolini, Catia; Cavassini, Matthias; Stoeckle, Marcel; Csajka, Chantal; Labhardt, Niklaus Daniel; Calmy, Alexandra; Swiss HIV Cohort Study (2019). Emtricitabine and lamivudine concentrations in saliva: a simple suitable test for treatment adherence. Journal of Antimicrobial Chemotherapy, 74(8):2468-2470.

Benkabouche, Mohamed; Racloz, Guillaume; Spechbach, Hervé; Lipsky, Benjamin A; Gaspoz, Jean-Michel; Uçkay, Ilker (2019). Four versus six weeks of antibiotic therapy for osteoarticular infections after implant removal: a randomized trial. Journal of Antimicrobial Chemotherapy, 74(8):2394-2399.

Anagnostopoulos, Alexia; Ledergerber, Bruno; Kuster, Stefan P; Scherrer, Alexandra U; Näf, Bettina; Greiner, Michael A; Rancic, Zoran; Kobe, Adrian; Bettex, Dominique; Hasse, Barbara (2019). Inadequate perioperative prophylaxis and postsurgical complications after graft implantation are important risk factors for subsequent vascular graft infections – prospective results from the VASGRA Cohort Study. Clinical Infectious Diseases, 69(4):621-630.

Grillová, Linda; Oppelt, Jan; Mikalová, Lenka; Novakova, Marketa; Giacani, Lorenzo; Niesnerová, Anežka; Noda, Angel A; Mechaly, Ariel E; Pospíšilová, Petra; Čejková, Darina; Grange, Philippe A; Dupin, Nicolas; Strnadel, Radim; Chen, Marcus; Denham, Ian; Arora, Natasha; Picardeau, Mathieu; Weston, Christopher; Forsyth, R Allyn; Šmajs, David (2019). Directly Sequenced Genomes of Contemporary Strains of Syphilis Reveal Recombination-Driven Diversity in Genes Encoding Predicted Surface-Exposed Antigens. Frontiers in Microbiology, 10:1691.

Gimeno, Alejandro; Sohlberg, Elina; Pakula, Tiina; Limnell, Jenni; Keller, Beat; Laitila, Arja; Vogelgsang, Susanne (2019). TaqMan qPCR for Quantification of Clonostachys rosea Used as a Biological Control Agent Against Fusarium graminearum. Frontiers in Microbiology, 10:1627.

Leonard, Cory Ann; Schoborg, Robert V; Low, Nicola; Unemo, Magnus; Borel, Nicole (2019). Pathogenic interplay between chlamydia trachomatis and neisseria gonorrhoeae that influences management and control efforts-more questions than answers? Current Clinical Microbiology Reports, 6:182-191.

Kropac, Alexandra C; Eshwar, Athmanya K; Stephan, Roger; Tasara, Taurai (2019). New insights on the role of the pLMST6 plasmid in listeria monocytogenes biocide tolerance and virulence. Frontiers in Microbiology, 10:1538.

Bulzu, Paul-Adrian; Andrei, Adrian-Ştefan; Salcher, Michaela M; Mehrshad, Maliheh; Inoue, Keiichi; Kandori, Hideki; Beja, Oded; Ghai, Rohit; Banciu, Horia L (2019). Casting light on Asgardarchaeota metabolism in a sunlit microoxic niche. Nature Microbiology, 4(7):1129-1137.

Zeaki, Nikoleta; Johler, Sophia; Skandamis, Panagiotis N; Schelin, Jenny (2019). The role of regulatory mechanisms and environmental parameters in Staphylococcal food poisoning and resulting challenges to risk assessment. Frontiers in Microbiology, 10:1307.

Chrdle, Aleš; Trnka, Tomáš; Musil, David; Fucentese, Sandro F; Bode, Peter; Keller, Peter M; Achermann, Yvonne (2019). periprosthetic joint infections diagnosed with growth in cultures. Journal of Clinical Microbiology, 57(8):e00339-19.

Frey, Pascal M; Marti, Grischa R; Droz, Sara; de Roche von Arx, Mirjam; Suter-Riniker, Franziska; Aujesky, Drahomir; Brugger, Silvio D (2019). Bacterial colonization of handheld devices in a tertiary care setting: a hygiene intervention study. Antimicrobial Resistance and Infection Control, 8:97.

Sommerstein, Rami; Marschall, Jonas; Kuster, Stefan P; Troillet, Nicolas; Carrel, Thierry; Eckstein, Friedrich S; Widmer, Andreas F (2019). Cardiovascular daytime varying effect in cardiac surgery on surgical site infections and 1-year mortality: A prospective cohort study with 22,305 patients. Infection Control and Hospital Epidemiology, 40(6):727-728.

Clack, Lauren; Willi, Ursina; Berenholtz, Sean; Aiken, Alexander M; Allegranzi, Benedetta; Sax, Hugo (2019). Implementation of a surgical unit-based safety programme in African hospitals: a multicentre qualitative study. Antimicrobial Resistance and Infection Control, 8:91.

Tall, Ben D; Gopinath, Gopal; Gangiredla, Jayanthi; Patel, Isha R; Fanning, Séamus; Lehner, Angelika (2019). Cronobacter Species. In: Doyle, MP; Diez-Gonzales, R; Hill, C. Food Microbiology: Fundamentals and Frontiers. Washington, 389-414.

Wolfensberger, Aline; Anagnostopoulos, Alexia; Clack, Lauren; Meier, Marie-Theres; Kuster, Stefan P; Sax, Hugo (2019). Effectiveness of an edutainment video teaching standard precautions - a randomized controlled evaluation study. Antimicrobial Resistance and Infection Control, 8:82.

Wambui, Joseph; Stephan, Roger (2019). Relevant aspects of Clostridium estertheticum as a specific spoilage organism of vacuum-packed meat. Microorganisms, 7(5):142.

Günthard, Huldrych F; Calvez, Vincent; Paredes, Roger; Pillay, Deenan; Shafer, Robert W; Wensing, Annemarie M; Jacobsen, Donna M; Richman, Douglas D (2019). Reply to Ambrosioni et al. Clinical Infectious Diseases, 68(11):1977-1978.

Uçkay, Ilker; Christofilopoulos, Panayiotis (2019). Idiopathic bone marrow edema with joint effusion - a differential diagnosis to infectious osteomyelitis. International Journal of Infectious Diseases, 84:97-98.

Kuratli, Jasmin; Borel, Nicole (2019). Perspective: Water-Filtered Infrared-A-Radiation (wIRA) – novel treatment options for chlamydial infections? Frontiers in Microbiology, 10:1053.

Muchaamba, Francis; Eshwar, Athmanya K; Stevens, Marc J A; von Ah, Ueli; Tasara, Taurai (2019). Variable carbon source utilization, stress resistance, and virulence profiles among Listeria monocytogenes strains responsible for Listeriosis outbreaks in Switzerland. Frontiers in Microbiology, 10:957.

Wagner, Karoline; Mancini, Stefano; Ritter, Claudia; Böttger, Erik C; Keller, Peter M (2019). Evaluation of the AID AmpC line probe assay for molecular detection of AmpC-producing Enterobacterales. Journal of Global Antimicrobial Resistance, 19:8-13.

Sparber, Florian; LeibundGut-Landmann, Salomé (2019). Interleukin-17 in antifungal immunity. Pathogens, 8(2):E54.

Silva, Marisa O D; Desmond, Peter; Derlon, Nicolas; Morgenroth, Eberhard; Pernthaler, Jakob (2019). Source Community and Assembly Processes Affect the Efficiency of Microbial Microcystin Degradation on Drinking Water Filtration Membranes. Frontiers in Microbiology, 10:843.

Plate, A; Anagnostopoulos, A; Glanzmann, J; Stadler, L; Weigelt, L; Sutter, R; Kästli, M; Zinkernagel, A S; Zingg, P O; Achermann, Y (2019). Synovial C-reactive protein features high negative predictive value but is not useful as a single diagnostic parameter in suspected periprosthetic joint infection (PJI). Journal of Infection, 78(6):439-444.

Wagner, K; Springer, B; Pires, V P; Keller, P M (2019). High-throughput screening of bacterial pathogens in clinical specimens using 16S rDNA qPCR and fragment analysis. Diagnostic Microbiology and Infectious Disease, 93(4):287-292.

Tarnutzer, Andrea; Andreoni, Federica; Keller, Nadia; Zürcher, Claudia; Norrby-Teglund, Anna; Schuepbach, Reto A; Zinkernagel, Annelies S (2019). Human polyspecific immunoglobulin attenuates group A streptococcal virulence factor activity and reduces disease severity in a murine necrotizing fasciitis model. Clinical Microbiology and Infection, 25(4):512.e7-512.e13.

Juhas, Mario; Widlake, Emma; Teo, Jeanette; Huseby, Douglas L; Tyrrell, Jonathan M; Polikanov, Yury S; Ercan, Onur; Petersson, Anna; Cao, Sha; Aboklaish, Ali F; Rominski, Anna; Crich, David; Böttger, Erik C; Walsh, Timothy R; Hughes, Diarmaid; Hobbie, Sven N (2019). In vitro activity of apramycin against multidrug-, carbapenem- and aminoglycoside-resistant Enterobacteriaceae and Acinetobacter baumannii. Journal of Antimicrobial Chemotherapy, 74(4):944-952.

Bommana, Sankhya; Jelocnik, Martina; Borel, Nicole; Marsh, Ian; Carver, Scott; Polkinghorne, Adam (2019). The limitations of commercial serological assays for detection of chlamydial infections in Australian livestock. Journal of Medical Microbiology, 68(4):627-632.

Uçkay, Ilker; Berli, Martin; Sendi, Parham; Lipsky, Benjamin A (2019). Principles and practice of antibiotic stewardship in the management of diabetic foot infections. Current Opinion in Infectious Diseases, 32(2):95-101.

Bernardi, Sara; Continenza, Maria Adelaide; Al-Ahmad, Ali; Karygianni, Lamprini; Follo, Marie; Filippi, Andreas; Macchiarelli, Guido (2019). Streptococcus spp. and Fusobacterium nucleatum in tongue dorsum biofilm from halitosis patients: a fluorescence in situ hybridization (FISH) and confocal laser scanning microscopy (CLSM) study. The New Microbiologica, 42(2):108-113.

Uçkay, Ilker; Stirnemann, Jérôme (2019). Exanthema associated with Capnocytophaga canimorsus bacteremia. International Journal of Infectious Diseases, 82:104-105.

Stoller, Andrea; Stevens, Marc J A; Stephan, Roger; Guldimann, Claudia (2019). Characteristics of Listeria monocytogenes strains persisting in a meat processing facility over a 4-year period. Pathogens, 8(1):E32.

Zurfluh, Katrin; Zogg, Anna Lena; Klumpp, Jochen; Schmitt, Sarah; Stephan, Roger; Nüesch-Inderbinen, Magdalena (2019). Complete nucleotide sequences of six blaCTX-M-1-encoding plasmids from Escherichia coli isolated from urinary tract and wound infections in dogs. Journal of Global Antimicrobial Resistance, 16:117-119.

Lepuschitz, Sarah; Ruppitsch, Werner; Pekard-Amenitsch, Shiva; Forsythe, Stephen J; Cormican, Martin; Mach, Robert L; Piérard, Denis; Allerberger, Franz (2019). Multicenter study of Cronobacter sakazakii Infections in humans, Europe, 2017. Emerging Infectious Diseases, 25(3):515-522.

Wagner, K; Imkamp, F; Pires, V P; Keller, P M (2019). Evaluation of Lightmix Mycoplasma macrolide assay for detection of macrolide-resistant Mycoplasma pneumoniae in pneumonia patients. Clinical Microbiology and Infection, 25(3):383.e5-383.e7.

Pitsch, Gianna; Bruni, Estelle Patricia; Forster, Dominik; Qu, Zhishuai; Sonntag, Bettina; Stoeck, Thorsten; Posch, Thomas (2019). Seasonality of Planktonic Freshwater Ciliates: Are Analyses Based on V9 Regions of the 18S rRNA Gene Correlated With Morphospecies Counts? Frontiers in Microbiology, 10:248.

Leon-Reyes, Selene; Schäfer, Juliane; Früh, Mathias; Schwenkglenks, Matthias; Reich, Oliver; Schmidlin, Kurt; Staehelin, Cornelia; Battegay, Manuel; Cavassini, Matthias; Hasse, Barbara; Bernasconi, Enos; Calmy, Alexandra; Hoffmann, Matthias; Schoeni-Affolter, Franziska; Zhao, Hongwei; Bucher, Heiner C (2019). Cost estimates for HIV care and patient characteristics for health resource utilisation from linkage of claims data with the Swiss HIV Cohort Study. Clinical Infectious Diseases, 68(5):827-833.

Grobusch, Martin P; Rodríguez-Morales, Alfonso J; Schlagenhauf, Patricia (2019). The Primaquine Problem-and the Solution? Point-of-care Diagnostics for Glucose 6-Phosphate Dehydrogenase Deficiency. Clinical Infectious Diseases, 69(8):1443-1445.

Shepherd, Leah; Ryom, Lene; Law, Matthew; Petoumenos, Kathy; Hatleberg, Camilla Ingrid; d'Arminio Monforte, Antonella; Sabin, Caroline; Bower, Mark; Bonnet, Fabrice; Reiss, Peter; de Wit, Stephane; Pradier, Christian; Weber, Rainer; El-Sadr, Wafaa; Lundgren, Jens; Mocroft, Amanda (2019). Cessation of Cigarette Smoking and the Impact on Cancer Incidence in HIV-positive Persons: The D:A:D Study. Clinical Infectious Diseases, 68(4):650-657.

Scudeller, L; Rodríguez-Baño, J; Zinkernagel, A; Tacconelli, Evelina; Akova, M; Friedrich, A W; Sanguinetti, M; Paul, M; Poljak, M (2019). ESCMID white paper: a guide on ESCMID guidance documents. Clinical Microbiology and Infection, 25(2):155-162.

Braun, Dominique L; Hampel, Benjamin; Kouyos, Roger; Nguyen, Huyen; Shah, Cyril; Flepp, Markus; Stöckle, Marcel; Conen, Anna; Béguelin, Charles; Künzler-Heule, Patrizia; Nicca, Dunja; Schmid, Patrick; Delaloye, Julie; Rougemont, Mathieu; Bernasconi, Enos; Rauch, Andri; Günthard, Huldrych F; Böni, Jürg; Fehr, Jan S; Swiss HIV Cohort Study (2019). High Cure Rates With Grazoprevir-Elbasvir With or Without Ribavirin Guided by Genotypic Resistance Testing Among Human Immunodeficiency Virus/Hepatitis C Virus-coinfected Men Who Have Sex With Men. Clinical Infectious Diseases, 68(4):569-576.

Braun, Dominique L; Hampel, Benjamin; Martin, Eileen; Kouyos, Roger; Kusejko, Katharina; Grube, Christina; Flepp, Markus; Stöckle, Marcel; Conen, Anna; Béguelin, Charles; Schmid, Patrick; Delaloye, Julie; Rougemont, Mathieu; Bernasconi, Enos; Rauch, Andri; Günthard, Huldrych F; Böni, Jürg; Fehr, Jan S; Swiss HIV Cohort Study (2019). High Number of Potential Transmitters Revealed in a Population-based Systematic Hepatitis C Virus RNA Screening Among Human Immunodeficiency Virus-infected Men Who Have Sex With Men. Clinical Infectious Diseases, 68(4):561-568.

Bachmann, Nadine; von Braun, Amrei; Labhardt, Niklaus D; Kadelka, Claus; Günthard, Huldrych F; Sekaggya-Wiltshire, Christine; Castelnuovo, Barbara; Kambugu, Andrew; Lejone, Thabo I; Böni, Jürg; Yerly, Sabine; Perreau, Matthieu; Klimkait, Thomas; Kouyos, Roger D; Fehr, Jan; Swiss HIV Cohort Study (2019). Importance of routine viral load monitoring: higher levels of resistance at ART failure in Uganda and Lesotho compared with Switzerland. Journal of Antimicrobial Chemotherapy, 74(2):468-472.

Guanziroli, N; Hannouche, D; Uçkay, I (2019). Is malnutrition associated with orthopaedic infections? A single-centre pilot evaluation. Journal of Hospital Infection, 101(2):229-230.

Polkinghorne, A; Borel, Nicole; Heijne, M; Pannekoek, Y (2019). New evidence for domesticated animals as reservoirs of Chlamydia-associated community-acquired pneumonia. Clinical Microbiology and Infection, 25(2):131-132.

Günthard, Huldrych F; Calvez, Vincent; Paredes, Roger; Pillay, Deenan; Shafer, Robert W; Wensing, Annemarie M; Jacobsen, Donna M; Richman, Douglas D (2019). Human Immunodeficiency Virus Drug Resistance: 2018 Recommendations of the International Antiviral Society-USA Panel. Clinical Infectious Diseases, 68(2):177-187.

von Braun, Amrei; Castelnuovo, Barbara; Ledergerber, Bruno; Cusato, Jessica; Buzibye, Allan; Kambugu, Andrew; Fehr, Jan; Calcagno, Andrea; Lamorde, Mohammed; Sekaggya-Wiltshire, Christine (2019). High efavirenz serum concentrations in TB/HIV-coinfected Ugandan adults with a CYP2B6 516 TT genotype on anti-TB treatment. Journal of Antimicrobial Chemotherapy, 74(1):135-138.

Grabinger, Thomas; Glaus Garzon, Jesus Francisco; Hausmann, Martin; Geirnaert, Annelies; Lacroix, Christophe; Hennet, Thierry (2019). Alleviation of Intestinal Inflammation by Oral Supplementation With 2-Fucosyllactose in Mice. Frontiers in Microbiology, 10:1385.

Fernández, Noemí; Cabrera, Juan J; Varadarajan, Adithi R; Lutz, Stefanie; Ledermann, Raphael; Roschitzki, Bernd; Eberl, Leo; Bedmar, Eulogio J; Fischer, Hans-Martin; Pessi, Gabriella; Ahrens, Christian H; Mesa, Socorro (2019). An Integrated Systems Approach Unveils New Aspects of Microoxia-Mediated Regulation in Bradyrhizobium diazoefficiens. Frontiers in Microbiology, 10:924.

Bağcıoğlu, M; Fricker, M; Johler, Sophia; Ehling-Schulz, M (2019). Detection and identification of Bacillus cereus, Bacillus cytotoxicus, Bacillus thuringiensis, Bacillus mycoides and Bacillus weihenstephanensis via machine learning based FTIR Spectroscopy. Frontiers in Microbiology, 10:902.

Allemann, Aurélie; Kraemer, Julia G; Korten, Insa; Ramsey, Kathryn; Casaulta, Carmen; SCILD Study Group; Wüthrich, Daniel; Ramette, Alban; Endimiani, Andrea; Latzin, Philipp; Hilty, Markus (2019). Nasal Resistome Development in Infants With Cystic Fibrosis in the First Year of Life. Frontiers in Microbiology, 10:212.

Poeker, Sophie A; Lacroix, Christophe; de Wouters, Tomas; Spalinger, Marianne R; Scharl, Michael; Geirnaert, Annelies (2019). Stepwise Development of an in vitro Continuous Fermentation Model for the Murine Caecal Microbiota. Frontiers in Microbiology, 10:1166.

Calderón, Claudia E; Tienda, Sandra; Heredia-Ponce, Zaira; Arrebola, Eva; Cárcamo-Oyarce, Gerardo; Eberl, Leo; Cazorla, Francisco M (2019). The Compound 2-Hexyl, 5-Propyl Resorcinol Has a Key Role in Biofilm Formation by the Biocontrol Rhizobacterium Pseudomonas chlororaphis PCL1606. Frontiers in Microbiology, 10:396.

2018

Bourras, Salim; Praz, Coraline R; Spanu, Pietro D; Keller, Beat (2018). Cereal powdery mildew effectors: a complex toolbox for an obligate pathogen. Current Opinion in Microbiology, 46:26-33.

Hartman, Kyle; van der Heijden, Marcel G A; Wittwer, Raphaël A; Banerjee, Samiran; Walser, Jean-Claude; Schlaeppi, Klaus (2018). Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming. Microbiome, 6(1):14.

Tackmann, Janko; Arora, Natasha; Schmidt, Thomas Sebastian Beedikt; Rodrigues, João Frederico Matias; von Mering, Christian (2018). Ecologically informed microbial biomarkers and accurate classification of mixed and unmixed samples in an extensive cross-study of human body sites. Microbiome, 6:192.

Peterhans, Sophie; Stevens, Marc J A; Nüesch-Inderbinen, Magdalena; Schmitt, Sarah; Stephan, Roger; Zurfluh, Katrin (2018). First report of a blaNDM-5-harbouring Escherichia coli ST167 isolated from a wound infection in a dog in Switzerland. Journal of Global Antimicrobial Resistance, 15:226-227.

Mehrshad, Maliheh; Salcher, Michaela M; Okazaki, Yusuke; Nakano, Shin-ichi; Šimek, Karel; Andrei, Adrian-Stefan; Ghai, Rohit (2018). Hidden in plain sight—highly abundant and diverse planktonic freshwater Chloroflexi. Microbiome, 6(1):176.

Sirová, Dagmara; Bárta, Jiří; Šimek, Karel; Posch, Thomas; Pech, Jiří; Stone, James; Borovec, Jakub; Adamec, Lubomír; Vrba, Jaroslav (2018). Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant. Microbiome, 6(1):225.

Fuchs, A; Gotta, V; Decker, M-L; Szinnai, G; Baumann, P; Bonhoeffer, J; Ritz, N (2018). Cytokine kinetic profiles in children with acute lower respiratory tract infection: a post hoc descriptive analysis from a randomized control trial. Clinical Microbiology and Infection, 24(12):1341.e1-1341.e7.

Böni, Laura; Kuster, Stefan P; Bartik, Bianka; Zbinden, Reinhard; Zingg, Patrick O; Achermann, Yvonne (2018). Association of Cutibacterium avidum Colonization in the Groin With Obesity: A Potential Risk Factor for Hip Periprosthetic Joint Infection. Clinical Infectious Diseases, 67(12):1878-1882.

Personnic, Nicolas; Striednig, Bianca; Hilbi, Hubert (2018). Legionella quorum sensing and its role in pathogen-host interactions. Current Opinion in Microbiology, 41:29-35.

Okazaki, Yusuke; Salcher, Michaela M; Callieri, Cristiana; Nakano, Shin-ichi (2018). The Broad Habitat Spectrum of the CL500-11 Lineage (Phylum Chloroflexi), a Dominant Bacterioplankton in Oxygenated Hypolimnia of Deep Freshwater Lakes. Frontiers in Microbiology, 9:2891.

Kuratli, Jasmin; Pesch, Theresa; Marti, Hanna; Leonard, Cory Ann; Blenn, Christian; Torgerson, Paul R; Borel, Nicole (2018). Water filtered infrared A and visible light (wIRA/VIS) irradiation reduces chlamydia trachomatis infectivity independent of targeted cytokine inhibition. Frontiers in Microbiology, 9:2757.

Kritikos, A; Neofytos, D; Khanna, N; Schreiber, P W; Boggian, K; Bille, J; Schrenzel, J; Mühlethaler, K; Zbinden, R; Bruderer, T; Goldenberger, D; Pfyffer, G; Conen, A; Van Delden, C; Zimmerli, S; Sanglard, D; Bachmann, D; Marchetti, O; Lamoth, F; Fungal Infection Network of Switzerland (FUNGINOS) (2018). Accuracy of Sensititre YeastOne echinocandins epidemiological cut-off values for identification of FKS mutant Candida albicans and Candida glabrata: a ten year national survey of the Fungal Infection Network of Switzerland (FUNGINOS). Clinical Microbiology and Infection, 24(11):1214.e1-1214.e4.

Borel, Nicole; Marti, Hanna; Pospischil, Andreas; Pesch, Theresa; Prähauser, Barbara; Wunderlin, Sabina; Seth-Smith, Helena M B; Low, Nicola; Flury, Renata (2018). Chlamydiae in human intestinal biopsy samples. FEMS Pathogens and Disease, 76(8):fty081.

Plate, Andreas; Stadler, Laura; Sutter, Reto; Anagnostopoulos, Alexia; Frustaci, Dario; Zbinden, Reinhard; Fucentese, Sandro F; Zinkernagel, Annelies S; Zingg, Patrick O; Achermann, Yvonne (2018). Inflammatory disorders mimicking periprosthetic joint infections may result in false positive α-defensin. Clinical Microbiology and Infection, 24(11):1212.e1-1212.e6.

Schreiber, Peter W; Hasse, Barbara; Sax, Hugo (2018). Mycobacterium chimaera infections after cardiac surgery - lessons learned. Clinical Microbiology and Infection, 24(11):1117-1118.

Meyer Sauteur, Patrick M; Unger, Wendy W J; van Rossum, Annemarie M C; Berger, Christoph (2018). The Art and Science of Diagnosing Mycoplasma pneumoniae Infection. The Pediatric Infectious Disease Journal, 37(11):1192-1195.

Schreiber, Peter W; Sax, Hugo; Wolfensberger, Aline; Clack, Lauren; Kuster, Stefan P; SwissNoso (2018). The preventable proportion of healthcare-associated infections 2005-2016: Systematic review and meta-analysis. Infection Control and Hospital Epidemiology, 39(11):1277-1295.

Kalt, Fabian; Schulthess, Bettina; Sidler, Fabian; Herren, Sebastian; Fucentese, Sandro F; Zingg, Patrick O; Berli, Martin; Zinkernagel, Annelies S; Zbinden, Reinhard; Achermann, Yvonne (2018). Corynebacterium species rarely cause orthopedic infections. Journal of Clinical Microbiology, 56(12):e01200-18.

Wolfensberger, Aline; Meier, Marie-Theres; Clack, Lauren; Schreiber, Peter W; Sax, Hugo (2018). Preventing ventilator-associated pneumonia ‒ a mixed-method study to find behavioral leverage for better protocol adherence. Infection Control and Hospital Epidemiology, 39(10):1222-1229.

Nüesch-Inderbinen, Magdalena; Morach, Marina; Cernela, Nicole; Althaus, Denise; Jost, Marianne; Mäusezahl, Mirjam; Bloomberg, Guido; Stephan, Roger (2018). Serotypes and virulence profiles of Shiga toxin-producing Escherichia coli strains isolated during 2017 from human infections in Switzerland. International Journal of Medical Microbiology : IJMM, 308(7):933-939.

Arrigo, Mattia; Vodovar, Nicolas; Von Moos, Seraina; Masson, Elisabeth; Segerer, Stephan; Cippà, Pietro E; Mebazaa, Alexandre (2018). High accuracy of proximity extension assay technology for the quantification of plasma brain natriuretic peptide. Journal of Clinical Laboratory Analysis, 32(8):e22574.

Schiavi, E; Plattner, S; Rodriguez-Perez, N; Barcik, W; Frei, R; Ferstl, R; Kurnik-Lucka, M; Groeger, D; Grant, R; Roper, J; Altmann, F; van Sinderen, D; Akdis, C A; O'Mahony, L (2018). Exopolysaccharide from Bifidobacterium longum subsp. longum 35624™ modulates murine allergic airway responses. Beneficial Microbes, 9(5):761-773.

Plate, Andreas; Kohl, Thomas A; Keller, Peter M; Majer, Sabine; Fulchini, Rosamaria; Strahm, Carol; Medugno, Cristoforo; Rancic, Zoran; Husmann, Lars; Sax, Hugo; Niemann, Stefan; Hasse, Barbara (2018). Aortic endograft infection with Mycobacterium chimaera and Granulicatella adiacens, Switzerland, 2014. Emerging Infectious Diseases, 24(9):1700-1704.

Wolfensberger, Aline; Clack, Lauren; Kuster, Stefan P; Passerini, Simone; Mody, Lona; Chopra, Vineet; Mann, Jason; Sax, Hugo (2018). Transfer of pathogens to and from patients, healthcare providers, and medical devices during care activity-a systematic review and meta-analysis. Infection Control and Hospital Epidemiology, 39(09):1093-1107.

Zurfluh, Katrin; Stevens, Marc J A; Stephan, Roger; Nüesch-Inderbinen, Magdalena (2018). Complete and assembled genome sequence of an NDM-5 and CTX-M-15 producing Escherichia coli sequence type 617 isolated from wastewater in Switzerland. Journal of Global Antimicrobial Resistance, 15:105-106.

Robert-Gangneux, Florence; Meroni, Valeria; Dupont, Damien; et al; Mueller, Nicolas J (2018). Toxoplasmosis in Transplant Recipients, Europe, 2010-2014. Emerging Infectious Diseases, 24(8):1497-1504.

Johler, Sophia; Kalbhenn, Eva M; Heini, Nicole; Brodmann, Peter; Gautsch, Sylvia; Bağcioğlu, Murat; Contzen, Matthias; Stephan, Roger; Ehling-Schulz, Monika (2018). Enterotoxin production of Bacillus thuringiensis isolates from biopesticides, foods, and outbreaks. Frontiers in Microbiology, 9:1915.

de Kraker, Marlieke E A; Sommer, Harriet; de Velde, Femke; Gravestock, Isaac; Weiss, Emmanuel; McAleenan, Alexandra; Nikolakopoulos, Stavros; Amit, Ohad; Ashton, Teri; Beyersmann, Jan; Held, Leonhard; Lovering, Andrew M; MacGowan, Alasdair P; Mouton, Johan W; Timsit, Jean-François; Wilson, David; Wolkewitz, Martin; Bettiol, Esther; Dane, Aaron; Harbarth, Stephan (2018). Optimizing the Design and Analysis of Clinical Trials for Antibacterials Against Multidrug-resistant Organisms: A White Paper From COMBACTE’s STAT-Net. Clinical Infectious Diseases, 67(12):1922-1931.

Carroll, L M; Zurfluh, K; Jang, H; Gopinath, G R; Nüesch-Inderbinen, Magdalena; Poirel, L; Nordmann, P; Stephan, Roger; Guldimann, Claudia (2018). First report of an mcr-1-harboring Salmonella enterica subsp. enterica serotype 4,5,12:i:- strain isolated from blood of a patient in Switzerland. International Journal of Antimicrobial Agents, 52(5):740-741.

Ujmajuridze, Aleksandre; Chanishvili, Nina; Goderdzishvili, Marina; Leitner, Lorenz; Mehnert, Ulrich; Chkhotua, Archil; Kessler, Thomas M; Sybesma, Wilbert (2018). Adapted Bacteriophages for Treating Urinary Tract Infections. Frontiers in Microbiology, 9:1832.

Mancini, Stefano; Marchesi, Martina; Blöchliger, Nicolas; Schmid, Marc; Courvalin, Patrice; Keller, Peter M; Böttger, Erik C (2018). Combining forecast probabilities with graphical visualization for improved reporting of antimicrobial susceptibility testing. Journal of Antimicrobial Chemotherapy, 73(8):2266-2268.

Kessi, Janine; Hörtensteiner, Stefan (2018). Inhibition of bacteriochlorophyll biosynthesis in the purple phototrophic bacteria Rhodospirillumrubrum and Rhodobacter capsulatus grown in the presence of a toxic concentration of selenite. BMC Microbiology, 18(1):81.

Marti, Hanna; Borel, Nicole; Dean, Deborah; Leonard, Cory A (2018). Evaluating the antibiotic susceptibility of chlamydia – new approaches for in vitro assays. Frontiers in Microbiology, 9:1414.

Nüesch-Inderbinen, Magdalena; Cernela, Nicole; Wüthrich, Daniel; Egli, Adrian; Stephan, Roger (2018). Genetic characterization of Shiga toxin producing Escherichia coli belonging to the emerging hybrid pathotype O80:H2 isolated from humans 2010–2017 in Switzerland. International Journal of Medical Microbiology : IJMM, 308(5):534-538.

Schreiber, Peter W; Köhler, Nora; Cervera, Rosita; Hasse, Barbara; Sax, Hugo; Keller, Peter M (2018). Detection limit of Mycobacterium chimaera in water samples for monitoring medical device safety: insights from a pilot experimental series. Journal of Hospital Infection, 99(3):284-289.

Kuehl, Richard; Banderet, Florian; Egli, Adrian; Keller, Peter M; Frei, Reno; Döbele, Thomas; Eckstein, Friedrich; Widmer, Andreas F (2018). Different Types of Heater-Cooler Units and Their Risk of Transmission of Mycobacterium chimaera During Open-Heart Surgery: Clues From Device Design. Infection Control and Hospital Epidemiology, 39(7):834-840.

Murra, May; Lützen, Lisbeth; Barut, Aynur; Zbinden, Reinhard; Lund, Marianne; Villesen, Palle; Nørskov-Lauritsen, Niels (2018). Whole-Genome Sequencing of Aggregatibacter Species Isolated from Human Clinical Specimens and Description of Aggregatibacter kilianii sp. nov. Journal of Clinical Microbiology, 56(7):pii: e00053.

Reinwald, M; Silva, J T; Mueller, N J; Fortún, J; Garzoni, C; de Fijter, J W; Fernández-Ruiz, M; Grossi, P; Aguado, J M (2018). ESCMID Study Group for Infections in Compromised Hosts (ESGICH) Consensus Document on the safety of targeted and biological therapies: an infectious diseases perspective (Intracellular signaling pathways: tyrosine kinase and mTOR inhibitors). Clinical Microbiology and Infection, 24 Suppl:S53-S70.

Bock, Christina; Salcher, Michaela M; Jensen, Manfred; Pandey, Ram Vinay; Boenigk, Jens (2018). Synchrony of Eukaryotic and Prokaryotic Planktonic Communities in Three Seasonally Sampled Austrian Lakes. Frontiers in Microbiology, 9:1290.

Alvarez Rojas, Cristian A; Mathis, Alexander; Deplazes, Peter (2018). Assessing the contamination of food and the environment with taenia and echinococcus eggs and their zoonotic transmission. Current Clinical Microbiology Reports, 5(2):154-163.

Nüesch-Inderbinen, Magdalena; Zurfluh, Katrin; Stevens, Marc J A; Stephan, Roger (2018). Complete and assembled genome sequence of an NDM-9- and CTX-M-15-producing Klebsiella pneumoniae ST147 wastewater isolate from Switzerland. Journal of Global Antimicrobial Resistance, 13:53-54.

Thurnheer, T; Belibasakis, G N (2018). Streptococcus oralis maintains homeostasis in oral biofilms by antagonizing the cariogenic pathogen Streptococcus mutans. Molecular Oral Microbiology, 33(3):234-239.

Pericàs, J M; Moreno, A; Almela, M; García-de-la-Mària, C; Marco, F; Muñoz, P; Peña, C; de Alarcón, A; Del Río, A; Eworo, A; Cruceta, A; Paré, J C; Mestres, C A; Miró, J M; FOSIMI Investigators (2018). Efficacy and safety of fosfomycin plus imipenem versus vancomycin for complicated bacteraemia and endocarditis due to methicillin-resistant Staphylococcus aureus: a randomized clinical trial. Clinical Microbiology and Infection, 24(6):673-676.

Askari, Zeynab; Mas-Coma, Santiago; Bouwman, Abigail S; Boenke, Nicole; Stöllner, Thomas; Aali, Abolfazl; Rezaiian, Mostafa; Mowlavi, Gholamreza (2018). Fasciola hepatica eggs in paleofaeces of the Persian onager Equus hemionus onager, a donkey from Chehrabad archaeological site, dating back to the Sassanid Empire (224-651 AD), in ancient Iran. Infection, Genetics and Evolution, 62:233-243.

Mbunkah, Herbert A; Marzel, Alex; Schmutz, Stefan; Kok, Yik Lim; Zagordi, Osvaldo; Shilaih, Mohaned; Nsanwe, Ndi N; Mbu, Eyongetah T; Besong, Lydia M; Sama, Bella A; Orock, Emmanuel; Kouyos, Roger D; Günthard, Huldrych F; Metzner, Karin J (2018). Low prevalence of transmitted HIV-1 drug resistance detected by a dried blood spot (DBS)-based next-generation sequencing (NGS) method in newly diagnosed individuals in Cameroon in the years 2015-16. Journal of Antimicrobial Chemotherapy, 73(7):1917-1929.

Trück, Johannes; Kelly, Sarah; Jawad, Sena; Snape, Matthew D; Voysey, Merryn; Pollard, Andrew J (2018). Differences in Immunization Site Pain in Toddlers Vaccinated With Either the 10- or the 13-Valent Pneumococcal Conjugate Vaccine. The Pediatric Infectious Disease Journal, 37(4):e103-e106.

Payne, B; Simmen, H-P; Csuka, E; Hintzpeter, M; Pahl, S; Brill, F H H (2018). Randomized controlled clinical trial on the antiseptic efficacy of polihexanide 0.04% on acute traumatic wounds. Journal of Hospital Infection, 98(4):429-432.

Veit, Olivia; Domingo, Cristina; Niedrig, Matthias; Staehelin, Cornelia; Sonderegger, Beat; Héquet, Delphine; Stoeckle, Marcel; Calmy, Alexandra; Schiffer, Veronique; Bernasconi, Enos; Flury, Domenica; Hatz, Christoph; Zwahlen, Marcel; Furrer, Hansjakob; Swiss HIV Cohort Study (2018). Long-term Immune Response to Yellow Fever Vaccination in Human Immunodeficiency Virus (HIV)-Infected Individuals Depends on HIV RNA Suppression Status: Implications for Vaccination Schedule. Clinical Infectious Diseases, 66(7):1099-1108.

Losasso, Carmen; Eckert, Ester M; Mastrorilli, Eleonora; Villiger, Jorg; Mancin, Marzia; Patuzzi, Ilaria; Di Cesare, Andrea; Cibin, Veronica; Barrucci, Federica; Pernthaler, Jakob; Corno, Gianluca; Ricci, Antonia (2018). Assessing the Influence of Vegan, Vegetarian and Omnivore Oriented Westernized Dietary Styles on Human Gut Microbiota: A Cross Sectional Study. Frontiers in Microbiology:9:317.

Rivoisy, Claire; Vena, Antonio; Schaeffer, Laura; Charlier, Caroline; Fontanet, Arnaud; Delahaye, François; Bouza, Emilio; Lortholary, Olivier; Munoz, Patricia; Lefort, Agnès (2018). Prosthetic Valve Candida spp. Endocarditis: New Insights Into Long-term Prognosis-The ESCAPE Study. Clinical Infectious Diseases, 66(6):825-832.

Sekaggya-Wiltshire, Christine; von Braun, Amrei; Lamorde, Mohammed; Ledergerber, Bruno; Buzibye, Allan; Henning, Lars; Musaazi, Joseph; Gutteck, Ursula; Denti, Paolo; de Kock, Miné; Jetter, Alexander; Byakika-Kibwika, Pauline; Eberhard, Nadia; Matovu, Joshua; Joloba, Moses; Muller, Daniel; Manabe, Yukari C; Kamya, Moses R; Corti, Natascia; Kambugu, Andrew; Castelnuovo, Barbara; Fehr, Jan S (2018). Delayed Sputum Culture Conversion in Tuberculosis-Human Immunodeficiency Virus-Coinfected Patients With Low Isoniazid and Rifampicin Concentrations. Clinical Infectious Diseases, 67(5):708-716.

Clack, Lauren; Passerini, Simone; Wolfensberger, Aline; Sax, Hugo; Manser, Tanja (2018). Frequency and Nature of Infectious Risk Moments During Acute Care Based on the INFORM Structured Classification Taxonomy. Infection Control and Hospital Epidemiology, 39(3):272-279.

Sommerstein, Rami; Hasse, Barbara; Marschall, Jonas; Sax, Hugo; Genoni, Michele; Schlegel, Matthias; Widmer, Andreas F; Swiss Chimaera Taskforce (2018). Global Health Estimate of Invasive Mycobacterium chimaera Infections Associated with Heater-Cooler Devices in Cardiac Surgery. Emerging Infectious Diseases, 24(3):576-578.

Clack, Lauren; Passerini, Simone; Manser, Tanja; Sax, Hugo (2018). Likelihood of Infectious Outcomes Following Infectious Risk Moments During Patient Care-An International Expert Consensus Study and Quantitative Risk Index. Infection Control and Hospital Epidemiology, 39(3):280-289.

Ramirez, Kelly S; Knight, Christopher G; de Hollander, Mattias; Brearley, Francis Q; Constantinides, Bede; Cotton, Anne; et al; Crowther, Thomas W; Hartman, Kyle; van der Heijden, Marcel G A (2018). Detecting macroecological patterns in bacterial communities across independent studies of global soils. Nature Microbiology, 3(2):189-196.

Hombach, Michael; Jetter, Marion; Blöchliger, Nicolas; Kolesnik-Goldmann, Natalia; Keller, Peter M; Böttger, Erik C (2018). Rapid disc diffusion antibiotic susceptibility testing for Pseudomonas aeruginosa, Acinetobacter baumannii and Enterococcus spp. Journal of Antimicrobial Chemotherapy, 73(2):385-391.

Wagner, Karoline; Springer, Burkard; Pires, Valeria P; Keller, Peter M (2018). Pathogen Identification by Multiplex LightMix Real-Time PCR Assay in Patients with Meningitis and Culture-Negative Cerebrospinal Fluid Specimens. Journal of Clinical Microbiology, 56(2):e01492.

Seidl, Kati; Leemann, Michèle; Zinkernagel, Annelies S (2018). The ArlRS two-component system is a regulator of Staphylococcus aureus-induced endothelial cell damage. European Journal of Clinical Microbiology & Infectious Diseases, 37(2):289-292.

Wagner, Karoline; Springer, Burkard; Imkamp, Frank; Opota, Onya; Greub, Gilbert; Keller, Peter M (2018). Detection of respiratory bacterial pathogens causing atypical pneumonia by multiplex Lightmix® RT-PCR. International Journal of Medical Microbiology : IJMM, 308(3):317-323.

Orasch, Christina; Mertz, Dominik; Garbino, Jorge; van Delden, Christian; Emonet, Stephane; Schrenzel, Jacques; Zimmerli, Stefan; Damonti, Lauro; Mühlethaler, Konrad; Imhof, Alexander; Ruef, Christian; Fehr, Jan; Zbinden, Reinhard; Boggian, Katia; Bruderer, Thomas; Flückiger, Ursula; Conen, Anna; Khanna, Nina; Frei, Reno; Bregenzer, Thomas; Lamoth, Frédéric; Erard, Véronique; Bochud, Pierre-Yves; Calandra, Thierry; Bille, Jacques; Marchetti, Oscar (2018). Fluconazole non-susceptible breakthrough candidemia after prolonged low-dose prophylaxis: a prospective FUNGINOS study. Journal of Infection, 76(5):489-495.

Poirel, Laurent; Larpin, Yu; Dobias, Jan; Stephan, Roger; Decousser, Jean-Winoc; Madec, Jean-Yves; Nordmann, Patrice (2018). Rapid Polymyxin NP test for the detection of polymyxin resistance mediated by the mcr-1 / mcr-2 genes. Diagnostic Microbiology and Infectious Disease, 90(1):7-10.

Sekaggya-Wiltshire, Christine; Lamorde, Mohammed; Kiragga, Agnes N; Dooley, Kelly E; Kamya, Moses R; Kambugu, Andrew; Fehr, Jan; Manabe, Yukari C; Castelnuovo, Barbara (2018). The utility of pharmacokinetic studies for the evaluation of exposure-response relationships for standard dose anti-tuberculosis drugs. Tuberculosis, 108:77-82.

Redondo, Javier Jareño; Keller, Peter M; Zbinden, Reinhard; Wagner, Karoline (2018). A novel RT-PCR for the detection of Helicobacter pylori and identification of clarithromycin resistance mediated by mutations in the 23S rRNA gene. Diagnostic Microbiology and Infectious Disease, 90(1):1-6.

Swart, A Leoni; Harrison, Christopher F; Eichinger, Ludwig; Steinert, Michael; Hilbi, Hubert (2018). Acanthamoeba and Dictyostelium as Cellular Models for Legionella Infection. Frontiers in Cellular and Infection Microbiology, 8:61.

Guldimann, Claudia; Johler, Sophia (2018). An introduction to current trends in foodborne pathogens and diseases. Current Clinical Microbiology Reports, 5:83-87.

Kohler, Philipp; Fulchini, Rosamaria; Albrich, Werner C; Egli, Adrian; Balmelli, Carlo; Harbarth, Stephan; Héquet, Delphine; Kahlert, Christian R; Kuster, Stefan P; Petignat, Christiane; Schlegel, Matthias; Kronenberg, Andreas (2018). Antibiotic resistance in Swiss nursing homes: analysis of National Surveillance Data over an 11-year period between 2007 and 2017. Antimicrobial Resistance and Infection Control, 7:88.

Leibl, M; Robinson, C; Schuurmans, M M (2018). Comparison of diagnostic performance of rapid and standard polymerase chain reaction laboratory test for influenza and respiratory syncytial virus detection in nasopharyngeal swabs from symptomatic lung transplant recipients. Infectious Diseases, 50(6):476-478.

Jans, C; Sarno, Eleonora; Collineau, L; Meile, L; Stärk, K D C; Stephan, Roger (2018). Consumer exposure to antimicrobial resistant bacteria from food at Swiss retail level. Frontiers in Microbiology, 9:362.

Lehner, Angelika; Tall, Ben Davis; Fanning, Séamus; Srikumar, Shabarinath (2018). Cronobacter spp.- opportunistic foodborne pathogens: an update on evolution, osmotic adaptation and pathogenesis. Current Clinical Microbiology Reports, 5(2):97-105.

Asare, P T; Greppi, A; Stettler, M; Schwab, C; Stevens, Marc J A; Lacroix, C (2018). Decontamination of minimally-processed fresh lettuce using reuterin produced by cactobacillus reuteri. Frontiers in Microbiology, 9:1421.

Seth-Smith, Helena M B; Imkamp, Frank; Tagini, Florian; Cuénod, Aline; Hömke, Rico; Jahn, Kathleen; Tschacher, Anne; Grendelmeier, Peter; Bättig, Veronika; Erb, Stefan; Reinhard, Miriam; Rütimann, Gottfried; Borrell, Sonia; Gagneux, Sebastien; Casanova, Carlo; Droz, Sara; Osthoff, Michael; Tamm, Michael; Nübel, Ulrich; Greub, Gilbert; Keller, Peter M; Egli, Adrian (2018). Discovery and Characterization of Mycobacterium basiliense sp. nov., a Nontuberculous Mycobacterium Isolated From Human Lungs. Frontiers in Microbiology, 9:3184.

Keller, Jonas; Wolfensberger, Aline; Clack, Lauren; Kuster, Stefan P; Dunic, Mesida; Eis, Doris; Flammer, Yvonne; Keller, Dagmar I; Sax, Hugo (2018). Do wearable alcohol-based handrub dispensers increase hand hygiene compliance? - a mixed-methods study. Antimicrobial Resistance and Infection Control, 7:143.

Poljak, M; Akova, M; Friedrich, A W; Rodríguez-Baño, J; Sanguinetti, M; Tacconelli, E; Zinkernagel, A (2018). ESCMID-an international Europe-based society committed to fostering cross-border collaboration and education to improve patient care. Clinical Microbiology and Infection, 24(1):1-2.

Annema, Wijtske; Nowak, Albina; von Eckardstein, Arnold; Saleh, Lanja (2018). Evaluation of the new restandardized Abbott Architect 25-OH Vitamin D assay in vitamin D-insufficient and vitamin D-supplemented individuals. Journal of Clinical Laboratory Analysis, 32(4):e22328.

Steiner, Bernhard; Weber, Stephen; Hilbi, Hubert (2018). Formation of the Legionella-containing vacuole: phosphoinositide conversion, GTPase modulation and ER dynamics. International Journal of Medical Microbiology : IJMM, 308(1):49-57.

Tritten, Lucienne; Geary, Timothy G (2018). Helminth extracellular vesicles in host–parasite interactions. Current Opinion in Microbiology, 46:73-79.

Braun, Dominique L; Marzel, Alex; Steffens, Daniela; Schreiber, Peter W; Grube, Christina; Scherrer, Alexandra U; Kouyos, Roger D; Günthard, Huldrych F; Swiss HIV Cohort Study (2018). High rates of subsequent asymptomatic STIs and risky sexual behavior in patients initially presenting with primary HIV-1 infection. Clinical Infectious Diseases, 66(5):735-742.

Seijsing, Johan; Sobieraj, Anna M; Keller, Nadia; Shen, Yang; Zinkernagel, Annelies S; Loessner, Martin J; Schmelcher, Mathias (2018). Improved Biodistribution and Extended Serum Half-Life of a Bacteriophage Endolysin by Albumin Binding Domain Fusion. Frontiers in Microbiology, 9:2927.

Bebezov, Bakhadyr; Mamashev, Nurlan; Umetaliev, Tilek; Ziadinov, Iskender; Craig, Philip S; Joekel, Deborah E; Deplazes, Peter; Grimm, Felix; Torgerson, Paul R (2018). Intense focus of Alveolar Echinococcosis, South Kyrgyzstan. Emerging Infectious Diseases, 24(6):1119-1122.

Richter, Anja M; Fazli, Mustafa; Schmid, Nadine; Shilling, Rebecca; Suppiger, Angela; Givskov, Michael; Eberl, Leo; Tolker-Nielsen, Tim (2018). Key Players and Individualists of Cyclic-di-GMP Signaling in Burkholderia cenocepacia. Frontiers in Microbiology, 9:3286.

Braunsdorf, Christina; LeibundGut-Landmann, Salomé (2018). Modulation of the fungal-host interaction by the intra-species diversity of C. albicans. Pathogens, 7(1):E11.

Meyer Sauteur, Patrick M; Abele-Horn, M; Liese, J G; Heininger, U (2018). Mycoplasma. In: DGPI - Deutsche Gesellschaft für Pädiatrische Infektiologie; Berner, Reinhard; Bialek, Ralf; Forster, Johannes; Härtel, Christoph; Heininger, Ulrich; Huppertz, Hans-Iko; Liese, Johannes G; Nadal, David; Simon, Arne. DGPI Handbuch Infektionen bei Kindern und Jugendlichen (7., vollständig überarbeitete Auflage). Stuttgart: Georg Thieme Verlag, 641-645.

Anagnostopoulos, Alexia; Bossard, Daniel Andreas; Ledergerber, Bruno; Zingg, Patrick O; Zinkernagel, Annelies S; Gerber, Christian; Achermann, Yvonne (2018). Perioperative antibiotic prophylaxis has no effect on time to positivity and proportion of positive samples: a cohort study of 64 Cutibacterium acnes bone and joint infections. Journal of Clinical Microbiology, 56(2):e01576-17.

Cieplik, Fabian; Steinwachs, Viktoria-Sophia; Muehler, Denise; Hiller, Karl-Anton; Thurnheer, Thomas; Belibasakis, Georgios N; Buchalla, Wolfgang; Maisch, Tim (2018). Phenalen-1-one-Mediated Antimicrobial Photodynamic Therapy: Antimicrobial Efficacy in a Periodontal Biofilm Model and Flow Cytometric Evaluation of Cytoplasmic Membrane Damage. Frontiers in Microbiology, 9:688.

Morach, Marina; Stephan, Roger; Schmitt, S; Ewers, C; Zschöck, M; Reyes-Velez, J; Gilli, U; del Pilar Crespo-Ortiz, M; Crumlish, M; Gunturu, R; Daubenberger, C A; Ip, Margaret; Regli, Walter; Johler, Sophia (2018). Population structure and virulence gene profiles of Streptococcus agalactiae collected from different hosts worldwide. European Journal of Clinical Microbiology & Infectious Diseases, 37(3):527-536.

Achermann, Yvonne; Liu, Jared; Zbinden, Reinhard; Zingg, Patrick O; Anagnostopoulos, Alexia; Barnard, Emma; Sutter, Reto; Li, Huiying; McDowell, Andrew; Zinkernagel, Annelies S (2018). Propionibacterium avidum - a virulent pathogen causing hip periprosthetic joint infection. Clinical Infectious Diseases, 66(1):54-63.

Bachofen, Claudia (2018). Selected viruses detected on and in our food. Current Clinical Microbiology Reports, 5:143-153.

Wolfensberger, A; Meier, A H; Kuster, S P; Mehra, T; Meier, M-T; Sax, H (2018). Should International Classification of Diseases codes be used to survey hospital-acquired pneumonia? Journal of Hospital Infection, 99(1):81-84.

Davat, Marie; Wuarin, Lydia; Stafylakis, Dimitrios; Abbas, Mohamed; Harbarth, Stephan; Hannouche, Didier; Uçkay, Ilker (2018). Should antibiotic prophylaxis before orthopedic implant surgery depend on the duration of pre-surgical hospital stay? Antimicrobial Resistance and Infection Control, 7:131.

Fetsch, Alexandra; Johler, Sophia (2018). Staphylococcus aureus as a foodborne pathogen. Current Clinical Microbiology Reports, 5(2):88-96.

Abbas, M; Aghayev, E; Troillet, Nicolas; Eisenring, Marie-Christine; Kuster, S P; Widmer, A F; Harbarth, Stephan; SwissNoso (2018). Temporal trends and epidemiology of Staphylococcus aureus surgical site infection in the Swiss surveillance network: a cohort study. Journal of Hospital Infection, 98(2):118-126.

Guariglia-Oropeza, Veronica; Hohl Orsi, R; Guldimann, Claudia; Wiedmann, M; Boor, K J (2018). The Listeria monocytogenes bile stimulon under acidic conditions is characterized by strain-specific patterns and the upregulation of motility, cell wall modification functions, and the PrfA regulon. Frontiers in Microbiology, 9:120.

Luthra, Sakshi; Rominski, Anna; Sander, Peter (2018). The Role of Antibiotic-Target-Modifying and Antibiotic-Modifying Enzymes in Drug Resistance. Frontiers in Microbiology, 9:2179.

2017

Trück, Johannes; Mitchell, Ruth; Jawad, Sena; Clutterbuck, Elizabeth A; Snape, Matthew D; Kelly, Dominic F; Voysey, Merryn; Pollard, Andrew J (2017). Divergent memory B cell responses in a mixed infant pneumococcal conjugate vaccine schedule. The Pediatric Infectious Disease Journal, 36(5):e130-e135.

Johler, Sophia (2017). A glimpse into the future - new therapeutic targets could transform the way we treat staphylococcal infections. Virulence, 8(8):1508-1510.

Cornely, Oliver A; Robertson, Michael N; Haider, Shariq; Grigg, Andrew; Geddes, Michelle; Aoun, Mickael; Heinz, Werner J; Raad, Issam; Schanz, Urs; Meyer, Ralf G; Hammond, Sarah P; Mullane, Kathleen M; Ostermann, Helmut; Ullmann, Andrew J; Zimmerli, Stefan; Van Iersel, M L P S; Hepler, Deborah A; Waskin, Hetty; Kartsonis, Nicholas A; Maertens, Johan (2017). Pharmacokinetics and safety results from the Phase 3 randomized, open-label, study of intravenous posaconazole in patients at risk of invasive fungal disease. Journal of Antimicrobial Chemotherapy, 72(12):3406-3413.

Seidl, Kati; Leemann, Michèle; Palheiros Marques, Miguel; Rachmühl, Carole; Leimer, Nadja; Andreoni, Federica; Achermann, Yvonne; Zinkernagel, Annelies S (2017). High level methicillin resistance correlates with reduced Staphylococcus aureus endothelial cell damage. International Journal of Medical Microbiology : IJMM, 307(1):11-20.

Rominski, Anna; Schulthess, Bettina; Müller, Daniel M; Keller, Peter M; Sander, Peter (2017). Effect of β-lactamase production and β-lactam instability on MIC testing results for Mycobacterium abscessus. Journal of Antimicrobial Chemotherapy, 72(11):3070-3078.

Hombach, Michael; Jetter, Marion; Keller, Peter M; Blöchliger, Nicolas; Kolesnik-Goldmann, Natalia; Böttger, Erik C (2017). Rapid detection of ESBL, carbapenemases, MRSA and other important resistance phenotypes within 6-8 h by automated disc diffusion antibiotic susceptibility testing. Journal of Antimicrobial Chemotherapy, 72(11):3063-3069.

Troillet, N; Eisenring, Marie-Christine; Widmer, A F (2017). First Results of the Swiss National Surgical Site Infection Surveillance Program: Who Seeks Shall Find - ERRATUM. Infection Control and Hospital Epidemiology, 38(11):1389.

AIDS-defining Cancer Project Working Group for IeDEA; COHERE (2017). Comparison of Kaposi Sarcoma Risk in Human Immunodeficiency Virus-Positive Adults Across 5 Continents: A Multiregional Multicohort Study. Clinical Infectious Diseases, 65(8):1316-1326.

Lewandowska, Dagmara Wanda; Zagordi, Osvaldo; Geissberger, Fabienne-Desirée; Kufner, Verena; Schmutz, Stefan; Böni, Jürg; Metzner, Karin J; Trkola, Alexandra; Huber, Michael (2017). Correction to: Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples. Microbiome, 5(1):137.

Kuster, Stefan P; Eisenring, Marie-Christine; Sax, Hugo; Troillet, Nicolas (2017). Structure, Process, and Outcome Quality of Surgical Site Infection Surveillance in Switzerland. Infection Control and Hospital Epidemiology, 38(10):1172-1181.

Blöchliger, Nicolas; Keller, Peter M; Böttger, Erik C; Hombach, Michael (2017). MASTER: a model to improve and standardize clinical breakpoints for antimicrobial susceptibility testing using forecast probabilities. Journal of Antimicrobial Chemotherapy, 72(9):2553-2561.

Becker, Eugenia; Schmidt, Thomas S B; Bengs, Susan; Poveda, Lucy; Opitz, Lennart; Atrott, Kirstin; Stanzel, Claudia; Biedermann, Luc; Rehman, Ateequr; Jonas, Daniel; von Mering, Christian; Rogler, Gerhard; Frey-Wagner, Isabelle (2017). Effects of oral antibiotics and isotretinoin on the murine gut microbiota. International Journal of Antimicrobial Agents, 50(3):342-351.

Lewandowska, Dagmara W; Zagordi, Osvaldo; Geissberger, Fabienne-Desirée; Kufner, Verena; Schmutz, Stefan; Böni, Jürg; Metzner, Karin J; Trkola, Alexandra; Huber, Michael (2017). Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples. Microbiome, 5(1):94.

Wilk, C Matthias; Weber, Isabel; Seidl, Kati; Rachmühl, Carole; Holzmann-Bürgel, Anne; Müller, Antonia M S; Kuster, Stefan P; Schanz, Urs; Zinkernagel, Annelies S (2017). Impact of oral gut decontamination on staphylococcus aureus colonization in patients undergoing allogeneic hematopoietic stem cell transplantation. International Journal of Antimicrobial Agents, 50(6):726-729.

Sabaté Brescó, Marina; Harris, Llinos G; Thompson, Keith; Stanic, Barbara; Morgenstern, Mario; O'Mahony, Liam; Richards, R Geoff; Moriarty, T Fintan (2017). Pathogenic Mechanisms and Host Interactions in Staphylococcus epidermidis Device-Related Infection. Frontiers in Microbiology:8:1401.

Mika, Moana; Maurer, Josua; Korten, Insa; Allemann, Aurélie; Aebi, Suzanne; Brugger, Silvio D; Qi, Weihong; Frey, Urs; Latzin, Philipp; Hilty, Markus (2017). Influence of the pneumococcal conjugate vaccines on the temporal variation of pneumococcal carriage and the nasal microbiota in healthy infants: a longitudinal analysis of a case-control study. Microbiome:5:85.

Bloemberg, Guido V; Braun-Kiewnick, Andrea; Tedrup, Jan; Meijerink, Carla; Durer, Elena; Ritter, Claudia; Keller, Peter M; Hombach, Michael (2017). Evaluation of the AID carbapenemase line probe assay for rapid detection and identification of carbapenemase genes in Gram-negative bacilli. Journal of Antimicrobial Chemotherapy, 72(7):1948-1954.

Wittkop, L; Arsandaux, J; Trevino, A; et al; Böni, Jürg; Calmy, A; COHERE in EuroCoord; ACHIeV2e Study Group (2017). CD4 cell count response to first-line combination ART in HIV-2+ patients compared with HIV-1+ patients: a multinational, multicohort European study. Journal of Antimicrobial Chemotherapy, 72:2869-2878.

Matt, U; Selchow, P; Dal Molin, M; Strommer, S; Sharif, O; Schilcher, K; Andreoni, F; Stenzinger, A; Zinkernagel, A S; Zeitlinger, M; Sander, P; Nemeth, J (2017). Chloroquine enhances the antimycobacterial activity of isoniazid and pyrazinamide by reversing inflammation-induced macrophage efflux. International Journal of Antimicrobial Agents, 50(1):55-62.

Kok, Yik Lim; Ciuffi, Angela; Metzner, Karin J (2017). Unravelling HIV-1 latency, one cell at a time. Trends in Microbiology, 25(11):932-941.

Zurfluh, Katrin; Bagutti, Claudia; Brodmann, Peter; Alt, M; Schulze, J; Fanning, S; Stephan, Roger (2017). Wastewater is a reservoir for clinically relevant carbapenemase and 16S rRNA methylase producing Enterobacteriaceae. International Journal of Antimicrobial Agents, 50(3):436-440.

Shaw, Megan L; Stertz, S (2017). Role of Host Genes in Influenza Virus Replication. In: Shaw, Megan L; Stertz, S. Current Topics in Microbiology and Immunology. Berlin, Heidelberg: Springer, 1-39.

de Groot, Ruben C A; Meyer Sauteur, Patrick M; Unger, Wendy W J; van Rossum, Annemarie M C (2017). Things that could be Mycoplasma pneumoniae. Journal of Infection, 74(Suppl 1):S95-S100.

Hombach, Michael; Jetter, Marion; Blöchliger, Nicolas; Kolesnik-Goldmann, Natalia; Böttger, Erik C (2017). Fully automated disc diffusion for rapid antibiotic susceptibility test results: a proof-of-principle study. Journal of Antimicrobial Chemotherapy, 72(6):1659-1668.

Schuler, Marianne; Schaedelin, Sabine; Aebi, Christoph; Berger, Christoph; Crisinel, Pierre-Alex; Diana, Alessandro; Niederer-Loher, Anita; Siegrist, Claire-Anne; Vaudaux, Bernard; Heininger, Ulrich (2017). Attitudes of Swiss Health Care Providers Toward Childhood Immunizations. The Pediatric Infectious Disease Journal, 36(6):e167-e174.

Borges, Álvaro H; Hoy, Jennifer F; Florence, Eric; Sedlacek, Dalibor; Stellbrink, Hans-Jürgen; Uzdaviniene, Vilma; Tomazic, Janez; Gargalianos-Kakolyris, Panagiotis; Schmid, Patrick; Orkin, Chloe; Pedersen, Court; Leen, Clifford; Pradier, Christian; Mulcahy, Fiona; Ridolfo, Anna Lisa; Staub, Therese; Maltez, Fernando; Weber, Rainer; Flamholc, Leo; Kyselyova, Galina; Lundgren, Jens D; Mocroft, Amanda; EuroSIDA Study Group (2017). Antiretrovirals, fractures, and osteonecrosis in a large international HIV cohort. Clinical Infectious Diseases, 64(10):1413-1421.

Leonard, Cory Ann; Schoborg, Robert V; Borel, Nicole (2017). Productive and penicillin-stressed chlamydia pecorum infection induces nuclear factor kappa b activation and interleukin-6 secretion in vitro. Frontiers in Cellular and Infection Microbiology, 7:180.

Rominski, Anna; Selchow, Petra; Becker, Katja; Brülle, Juliane K; Dal Molin, Michael; Sander, Peter (2017). Elucidation of Mycobacterium abscessus aminoglycoside and capreomycin resistance by targeted deletion of three putative resistance genes. Journal of Antimicrobial Chemotherapy, 72(8):2191-2200.

Béguelin, Charles; Friolet, Nicole; Moradpour, Darius; Sahli, Roland; Suter-Riniker, Franziska; Lüthi, Alexander; Cavassini, Matthias; Günthard, Huldrych F; Battegay, Manuel; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Atkinson, Andrew; Rauch, Andri; Wandeler, Gilles; Swiss HIV Cohort Study (2017). Impact of Tenofovir on Hepatitis Delta Virus Replication in the Swiss Human Immunodeficiency Virus Cohort Study. Clinical Infectious Diseases, 64(9):1275-1278.

Sekaggya-Wiltshire, C; von Braun, A; Scherrer, A U; Manabe, Y C; Buzibye, A; Muller, D; Ledergerber, B; Gutteck, U; Corti, N; Kambugu, A; Byakika-Kibwika, P; Lamorde, M; Castelnuovo, B; Fehr, J; Kamya, M R (2017). Anti-TB drug concentrations and drug-associated toxicities among TB/HIV-coinfected patients. Journal of Antimicrobial Chemotherapy, 72(4):1172-1177.

Hombach, Michael; Weissert, Christoph; Senn, Maria Magdalena; Zbinden, Reinhard (2017). Comparison of phenotypic methods for the detection of penicillinase in Staphylococcus aureus and proposal of a practical diagnostic approach. Journal of Antimicrobial Chemotherapy, 72(4):1089-1093.

Buess, Simone; Nüesch-Inderbinen, Magdalena; Stephan, Roger; Zurfluh, Katrin (2017). Assessment of animals as a reservoir for colistin resistance: no MCR-1/MCR-2 producing Enterobacteriaceae detected in Swiss livestock. Journal of global antimicrobial resistance, 8:33-34.

Seth-Smith, Helena M B; Katharios, Pantelis; Dourala, Nancy; Mateos, José M; Fehr, Alexander G J; Nufer, Lisbeth; Ruetten, Maja; Guevara Soto, Maricruz; Vaughan, Lloyd (2017). Ca. Similichlamydia in epitheliocystis co-infection of gilthead seabream gills: unique morphological features of a deep branching chlamydial family. Frontiers in Microbiology, 8:508.

Kang, Mi-Sun; Lim, Hae-Soon; Oh, Jong-Suk; Lim, You-Jin; Wuertz-Kozak, Karin; Harro, Janette M; Shirtliff, Mark E; Achermann, Yvonne (2017). Antimicrobial activity of Lactobacillus salivarius and Lactobacillus fermentum against Staphylococcus aureus. FEMS Pathogens and Disease, 75(2):ftx009.

Kletenkov, K; Hoffmann, D; Böni, J; Yerly, S; Aubert, V; Schöni-Affolter, F; Struck, D; Verheyen, J; Klimkait, T (2017). Role of Gag mutations in PI resistance in the Swiss HIV cohort study: bystanders or contributors? Journal of Antimicrobial Chemotherapy, 72(3):866-875.

Bloch, Susanne; Thurnheer, Thomas; Murakami, Yukitaka; Belibasakis, Georgios N; Schäffer, Christina (2017). Behavior of two Tannerella forsythia strains and cell surface mutants in multispecies oral biofilms. Molecular Oral Microbiology, 32(5):404-418.

Kovari, Helen; Rauch, Andri; Kouyos, Roger; Rougemont, Mathieu; Cavassini, Matthias; Schmid, Patrick; Stöckle, Marcel; Bernasconi, Enos; Weber, Rainer; Ledergerber, Bruno; Swiss HIV Cohort Study (2017). Hepatitis C Infection and the Risk of Non-Liver-Related Morbidity and Mortality in HIV-Infected Persons in the Swiss HIV Cohort Study. Clinical Infectious Diseases, 64(4):490-497.

Feigelman, Rounak; Kahlert, Christian R; Baty, Florent; Rassouli, Frank; Kleiner, Rebekka L; Kohler, Philipp; Brutsche, Martin H; von Mering, Christian (2017). Sputum DNA sequencing in cystic fibrosis: non-invasive access to the lung microbiome and to pathogen details. Microbiome, 5(1):20.

Rominski, Anna; Roditscheff, Anna; Selchow, Petra; Böttger, Erik C; Sander, Peter (2017). Intrinsic rifamycin resistance of Mycobacterium abscessus is mediated by ADP-ribosyltransferase MAB_0591. Journal of Antimicrobial Chemotherapy, 72(2):376-384.

Pulcini, Céline; Tebano, Gianpiero; Mutters, Nico T; Tacconelli, Evelina; Cambau, Emmanuelle; Kahlmeter, Gunnar; Jarlier, Vincent (2017). Selective reporting of antibiotic susceptibility test results in European countries: an ESCMID cross-sectional survey. International Journal of Antimicrobial Agents, 49(2):162-166.

Sommerstein, Rami; Schreiber, Peter W; Diekema, Daniel J; Edmond, Michael B; Hasse, Barbara; Marschall, Jonas; Sax, Hugo (2017). Mycobacterium chimaera outbreak associated with heater-cooler devices: piecing the puzzle together. Infection Control and Hospital Epidemiology, 38(1):103-108.

Clack, Lauren; Scotoni, Manuela; Wolfensberger, Aline; Sax, Hugo (2017). "First-person view" of pathogen transmission and hand hygiene - use of a new head-mounted video capture and coding tool. Antimicrobial Resistance and Infection Control, 6:108.

Emond Rheault, J G; Jeukens, J; Freschi, L; Kukavica-Ibrulj, I; Boyle, B; Dupont, M J; Stephan, Roger; Goodridge, Lawrence; Levesque, Roger (2017). A Syst-OMICS approach to ensuring food safety and reducing the economic burden of Salmonellosis. Frontiers in Microbiology, 8:996.

Leong, Cheryl; Buttafuoco, Antonino; Glatz, Martin; Bosshard, Philipp P (2017). Antifungal Susceptibility Testing of Malassezia spp. with an Optimized Colorimetric Broth Microdilution Method. Journal of Clinical Microbiology, 55(6):1883-1893.

Nüesch-Inderbinen, Magdalena; Baschera, Marco; Zurfluh, Katrin; Hächler, Herbert; Nüesch, H R; Stephan, Roger (2017). Clonal diversity, virulence potential and antimicrobial resistance of Escherichia coli causing community acquired urinary tract infection in Switzerland. Frontiers in Microbiology, 8:2334.

Eshwar, A K; Guldimann, Claudia; Oevermann, Anna; Tasara, Taurai (2017). Cold-shock domain family proteins (Csps) are involved in regulation of virulence, cellular aggregation and flagella-based motility in Listeria monocytogenes. Frontiers in Cellular and Infection Microbiology, 7:453.

Chase, H R; Gopinath, G R; Eshwar, A K; Stoller, A; Fricker-Feer, C; Gangiredla, J; Patel, I R; Cinar, H N; Jeong, H; Lee, C; Negrete, F; Finkelstein, S; Stephan, Roger; Tall, B D; Lehner, Angelika (2017). Comparative genomic characterization of the highly persistent and potentially virulent Cronobacter sakazakii ST83, CC65 strain H322 and other ST83 strains. Frontiers in Microbiology, 8:1136.

Meier, A B; Guldimann, Claudia; Markkula, A; Pöntinen, A; Korkeala, H; Tasara, Taurai (2017). Comparative phenotypic and genotypic analysis of Swiss and Finnish Listeria monocytogenes isolates with respect to benzalkonium chloride resistance. Frontiers in Microbiology, 8:397.

Lardi, Martina; de Campos, Samanta Bolzan; Purtschert, Gabriela; Eberl, Leo; Pessi, Gabriella (2017). Competition Experiments for Legume Infection Identify Burkholderia phymatum as a Highly Competitive β-Rhizobium. Frontiers in Microbiology, 8:1527.

Wang, Shaopu; Giller, Katrin; Kreuzer, Michael; Ulbrich, Susanne E; Braun, Ueli; Schwarm, Angela (2017). Contribution of ruminal fungi, archaea, protozoa, and bacteria to the methane suppression caused by oilseed supplemented diets. Frontiers in Microbiology, 8:1864.

Koehler, Philipp; Hamprecht, Axel; Bader, Oliver; Bekeredjian-Ding, Isabelle; Buchheidt, Dieter; Doelken, Gottfried; Elias, Johannes; Haase, Gerhard; Hahn-Ast, Corinna; Karthaus, Meinolf; Kekulé, Alexander; Keller, Peter; Kiehl, Michael; Krause, Stefan W; Krämer, Carolin; Neumann, Silke; Rohde, Holger; La Rosée, Paul; Ruhnke, Markus; Schafhausen, Philippe; Schalk, Enrico; Schulz, Katrin; Schwartz, Stefan; Silling, Gerda; Staib, Peter; Ullmann, Andrew; Vergoulidou, Maria; Weber, Thomas; Cornely, Oliver A; Vehreschild, Maria J G T (2017). Epidemiology of invasive aspergillosis and azole resistance in patients with acute leukaemia: the SEPIA study. International Journal of Antimicrobial Agents, 49(2):218-223.

Fröhlich, Maryna; Fehr, Jan; Sulser, Tullio; Eberli, Daniel; Mortezavi, Ashkan (2017). Extraction strings for ureteric stents: is there an increased risk for urinary tract infections? Surgical Infections, 18(8):936-940.

Zehnder, Matthias; Rechenberg, D-K; Thurnheer, T; Lüthi-Schaller, H; Belibasakis, G N (2017). FISHing for gutta-percha-adhered biofilms in purulent post-treatment apical periodontitis. Molecular Oral Microbiology, 32(3):226-235.

Bärlocher, Kevin; Welin, Amanda; Hilbi, Hubert (2017). Formation of the legionella replicative compartment at the crossroads of retrograde trafficking. Frontiers in Cellular and Infection Microbiology, 7:482.

Hingston, P; Chen, J; Dhillon, B; Brinkman, F; Laing, C; Gannon, V; Truelstrup Hansen, L; Tasara, Taurai; Allen, Kevin; Wang, S (2017). Genotypes associated with Listeria monocytogenes isolates displaying impaired or enhanced tolerances to cold, salt, acid, or desiccation stress. Frontiers in Microbiology, 8:369.

Sommerstein, R; Kohler, P P; Hasse, B (2017). Global Mycobacterium chimaera outbreak: challenges for the near future. Journal of Hospital Infection, 96(3):207-208.

Kyburz, Andreas; Müller, Anne (2017). Helicobacter pylori and Extragastric Diseases. In: Tegtmeyer, Nicole; Backert, Steffen. Molecular Pathogenesis and Signal Transduction by Helicobacter pylori. Springer International Publishing: Springer, 325-347.

Fierz, Lisa; Cernela, Nicole; Hauser, E; Nüesch-Inderbinen, Magdalena; Stephan, Roger (2017). Human infections with Shiga toxin-producing Escherichia coli, Switzerland, 2010-2014. Frontiers in Microbiology, 8:1471.

Ghisla, Virginia; Scherrer, Alexandra U; Nicca, Dunja; Braun, Dominique L; Fehr, Jan S (2017). Incidence of hepatitis C in HIV positive and negative men who have sex with men 2000-2016: a systematic review and meta-analysis. Infection, 45(3):309-321.

Hochstrasser, Ramon; Hilbi, Hubert (2017). Intra-species and inter-kingdom signaling of Legionella pneumophila. Frontiers in Microbiology, 8:79.

Zurfluh, Katrin; Nüesch-Inderbinen, Magdalena; Klumpp, Jochen; Poirel, Laurent; Nordmann, Patrice; Stephan, Roger (2017). Key features of mcr-1-bearing plasmids from Escherichia coli isolated from humans and food. Antimicrobial Resistance and Infection Control, 6:91.

Becker, Katja; Haldimann, Klara; Selchow, Petra; Reinau, Lukas M; Dal Molin, Michael; Sander, Peter (2017). Lipoprotein Glycosylation by Protein-O-Mannosyltransferase (MAB_1122c) Contributes to Low Cell Envelope Permeability and Antibiotic Resistance of Mycobacterium abscessus. Frontiers in Microbiology, 8:2123.

Bailly, Aurélien; Weisskopf, Laure (2017). Mining the Volatilomes of Plant-Associated Microbiota for New Biocontrol Solutions. Frontiers in Microbiology:8:1638.

de Campos, Samanta Bolzan; Lardi, Martina; Gandolfi, Alessia; Eberl, Leo; Pessi, Gabriella (2017). Mutations in Two Paraburkholderia phymatum Type VI Secretion Systems Cause Reduced Fitness in Interbacterial Competition. Frontiers in Microbiology:8:2473.

Schreiber, Peter W; Sax, Hugo (2017). Mycobacterium chimaera infections associated with heater–cooler units in cardiac surgery. Current Opinion in Infectious Diseases, 30(4):388-394.

Schön, T; Miotto, P; Köser, C U; Viveiros, M; Böttger, E; Cambau, E (2017). Mycobacterium tuberculosis drug-resistance testing: challenges, recent developments and perspectives. Clinical Microbiology and Infection, 23(3):154-160.

Nahid, H; Staub, D; Hächler, Herbert; Albrich, W C (2017). Pneumonia caused by Shigella sonnei with an atypical clinical presentation. Infection, 45(2):241-244.

Hindermann, Denise; Gopinath, G; Chase, H; Negrete, F; Althaus, Denise; Zurfluh, Katrin; Tall, B D; Stephan, Roger; Nüesch-Inderbinen, Magdalena (2017). Salmonella enterica serovar Infantis from food and human infections, Switzerland, 2010-2015: poultry-related multidrug resistant clones and an emerging ESBL producing clonal lineage. Frontiers in Microbiology, 8:1322.

Zurfluh, Katrin; Stephan, Roger; Widmer, A; Poirel, Laurent; Nordmann, Patrice; Nüesch, H J; Hächler, Herbert; Nüesch-Inderbinen, Magdalena (2017). Screening for fecal carriage of MCR-producing Enterobacteriaceae in healthy humans and primary care patients. Antimicrobial Resistance and Infection Control, 6:28.

Broecker, Felix; Russo, Giancarlo; Klumpp, Jochen; Moelling, Karin (2017). Stable core virome despite variable microbiome after fecal transfer. Gut Microbes, 8(3):214-220.

Guldimann, Claudia; Guariglia-Oropeza, V; Harrand, S; Kentner, David; Boor, K J; Wiedmann, Martin (2017). Stochastic and differential activation of σB and PrfA in Listeria monocytogenes at the single cell level under different environmental stress conditions. Frontiers in Microbiology, 8:348.

Münz, Christian (2017). The Autophagic Machinery in Viral Exocytosis. Frontiers in Microbiology, 8:269.

Joller, Nicole; Kuchroo, Vijay K (2017). Tim-3, Lag-3, and TIGIT. In: Yoshimura, Akihiko. Emerging Concepts Targeting Immune Checkpoints in Cancer and Autoimmunity. Cham: Springer, 127-156.

2016

Kovari, Helen; Rauch, Andri; Kouyos, Roger; Rougemont, Mathieu; Cavassini, Matthias; Schmid, Patrick; Stöckle, Marcel; Bernasconi, Enos; Weber, Rainer; Ledergerber, Bruno; Swiss HIV Cohort Study (2016). Hepatitis C infection and the risk of non-liver-related morbidity and mortality in HIV-positive persons in the Swiss HIV Cohort Study. Clinical Infectious Diseases:Epub ahead of print.

Klöckner, A; Nagel, M; Greub, G; Aeby, S; Hoffmann, K; Liégeois, F; Rouet, F; De Benedetti, S; Borel, Nicole; Henrichfreise, B (2016). Chlamydia-related bacteria in free-living and captive great apes, Gabon. Emerging Infectious Diseases, 22(12):2199-2201.

Imkamp, Frank; Keller, Peter M; Böttger, Erik C (2016). Comment on: Delamanid susceptibility testing of Mycobacterium tuberculosis using the resazurin microtitre assay and the BACTEC™ MGIT™ 960 system. Journal of Antimicrobial Chemotherapy, 71(12):3624.

Granato, Elisa T; Harrison, Freya; Kümmerli, Rolf (2016). Do bacterial “virulence factors” always increase virulence? A meta-analysis of pyoverdine production in Pseudomonas aeruginosa as a test case. Frontiers in Microbiology, 7:1952.

Meinel, D M; Kuehl, R; Zbinden, R; Boskova, V; Garzoni, C; Fadini, D; Dolina, M; Blümel, B; Weibel, T; Tschudin-Sutter, S; Widmer, A F; Bielicki, J A; Dierig, A; Heininger, U; Konrad, R; Berger, A; Hinic, V; Goldenberger, D; Blaich, A; Stadler, T; Battegay, M; Sing, A; Egli, A (2016). Outbreak investigation for toxigenic Corynebacterium diphtheriae wound infections in refugees from Northeast Africa and Syria in Switzerland and Germany by whole genome sequencing. Clinical Microbiology and Infection, 22(12):1003.e1-1003.e8.

COHERE (2016). Changing Incidence and Risk Factors for Kaposi Sarcoma by Time Since Starting Antiretroviral Therapy: Collaborative Analysis of 21 European Cohort Studies. Clinical Infectious Diseases, 63(10):1373-1379.

Bader, J; Däumer, M; Schöni-Affolter, F; Böni, J; Gorgievski-Hrisoho, Meri; Martinetti, G; Thielen, A; Klimkait, T (2016). Therapeutic Immune Recovery and Reduction of CXCR4-Tropic HIV-1. Clinical Infectious Diseases, 64(3):295-300.

Niggli, Fabian; Huber, Lars C; Benden, Christian; Schuurmans, Macé M (2016). Human metapneumovirus in lung transplant recipients: characteristics and outcomes. Infectious Diseases, 48(11-12):852-856.

Bossard, Daniel Andreas; Ledergerber, Bruno; Zingg, Patrick O; Gerber, Christian; Zinkernagel, Annelies S; Zbinden, Reinhard; Achermann, Yvonne (2016). Optimal length of cultivation time for isolation of propionibacterium acnes in suspected bone and joint infections is more than 7 days. Journal of Clinical Microbiology, 54(12):3043-3049.

Wandeler, Gilles; Mulenga, Lloyd; Vinikoor, Michael J; Kovari, Helen; Battegay, Manuel; Calmy, Alexandra; Cavassini, Matthias; Bernasconi, Enos; Schmid, Patrick; Bolton-Moore, Carolyn; Sinkala, Edford; Chi, Benjamin H; Egger, Matthias; Rauch, Andri; IeDEA-Southern Africa; Swiss HIV Cohort Study (2016). Liver fibrosis in treatment-naïve HIV-infected and HIV/HBV co-infected patients: Zambia and Switzerland compared. International Journal of Infectious Diseases, 51:97-102.

Schreiber, Peter W; Kuster, Stefan P; Hasse, Barbara; Bayard, Cornelia; Rüegg, Christian; Kohler, Philipp; Keller, Peter M; Bloemberg, Guido V; Maisano, Francesco; Bettex, Dominique; Halbe, Maximilian; Sommerstein, Rami; Sax, Hugo (2016). Reemergence of Mycobacterium chimaera in Heater-Cooler Units despite Intensified Cleaning and Disinfection Protocol. Emerging Infectious Diseases, 22(10):1830-1833.

Gjærde, Lars I; Shepherd, Leah; Jablonowska, Elzbieta; Lazzarin, Adriano; Rougemont, Mathieu; Darling, Katharine; Battegay, Manuel; Braun, Dominique; Martel-Laferriere, Valerie; Lundgren, Jens D; Rockstroh, Jürgen K; Gill, John; Rauch, Andri; Mocroft, Amanda; Klein, Marina B; Peters, Lars (2016). Trends in Incidences and Risk Factors for Hepatocellular Carcinoma and Other Liver Events in HIV and Hepatitis C Virus-coinfected Individuals From 2001 to 2014: A Multicohort Study. Clinical Infectious Diseases, 63(6):821-829.

Zurfluh, Katrin; Hächler, Herbert; Stephan, Roger; Nüesch-Inderbinen, Magdalena (2016). Long-term shedding of CTX-M-15 producing E. coli B2:ST127 by a healthy asymptomatic carrier. International Journal of Antimicrobial Agents, 48(4):466.

Scherrer, Alexandra U; Bloemberg, Guido; Zbinden, Reinhard; Zinkernagel, Annelies S; Fuchs, Claudio; Frauenfelder, Sandra; Rancic, Zoran; Mayer, Dieter; Hasse, Barbara (2016). Prosthetic vascular graft infections: bacterial cultures from negative-pressure-wound-therapy foams do not improve diagnostics. Journal of Clinical Microbiology, 54(8):2190-2193.

Maldarelli, Grace A; Piepenbrink, Kurt H; Scott, Alison J; Freiberg, Jeffrey A; Song, Yang; Achermann, Yvonne; Ernst, Robert K; Shirtliff, Mark E; Sundberg, Eric J; Donnenberg, Michael S; von Rosenvinge, Erik C (2016). Type IV pili promote early biofilm formation by Clostridium difficile. FEMS Pathogens and Disease, 74(6):ftw061.

Wang, J; Gibbons, James F; McGrath, K; Bai, L; Li, Fengqin; Leonard, Finola C; Stephan, Roger; Fanning, Séamus (2016). Molecular characterization of blaESBL-producing Escherichia coli cultured from pig farms in Ireland. Journal of Antimicrobial Chemotherapy, 71(11):3062-3065.

Pires, João; Kuenzli, Esther; Kasraian, Sara; Tinguely, Regula; Furrer, Hansjakob; Hilty, Markus; Hatz, Christoph; Endimiani, Andrea (2016). Polyclonal Intestinal Colonization with Extended-Spectrum Cephalosporin-Resistant Enterobacteriaceae upon Traveling to India. Frontiers in Microbiology, 7:1069.

Stucki, David; Ballif, Marie; Egger, Matthias; Furrer, Hansjakob; Altpeter, Ekkehardt; Battegay, Manuel; Droz, Sara; Bruderer, Thomas; Coscolla, Mireia; Borrell, Sonia; Zürcher, Kathrin; Janssens, Jean-Paul; Calmy, Alexandra; Mazza Stalder, Jesica; Jaton, Katia; Rieder, Hans L; Pfyffer, Gaby E; Siegrist, Hans H; Hoffmann, Matthias; Fehr, Jan; Dolina, Marisa; Frei, Reno; Schrenzel, Jacques; Böttger, Erik C; Gagneux, Sebastien; Fenner, Lukas (2016). Standard genotyping overestimates transmission of mycobacterium tuberculosis among immigrants in a low-incidence country. Journal of Clinical Microbiology, 54(7):1862-1870.

Trück, Johannes; Jawad, Sena; Goldblatt, David; Roalfe, Lucy; Snape, Matthew D; Voysey, Merryn; Pollard, Andrew J (2016). The antibody response following a booster with either a 10- or 13-valent pneumococcal conjugate vaccine in toddlers primed with a 13-valent pneumococcal conjugate vaccine in early infancy. The Pediatric Infectious Disease Journal, 35(7):787-793.

Jost, Geraldine; Bloemberg, Guido V; Hombach, Michael (2016). Improved sensitivity for meticillin resistance detection in coagulase-negative staphylococci by moxalactam antibiotic discs or a cefoxitin investigation zone. Journal of Medical Microbiology, 65(6):566-568.

Personnic, Nicolas; Bärlocher, Kevin; Finsel, Ivo; Hilbi, Hubert (2016). Subversion of retrograde trafficking by translocated pathogen effectors. Trends in Microbiology, 24(6):450-462.

Sommerstein, Rami; Rüegg, Christian; Kohler, Philipp; Bloemberg, Guido; Kuster, Stefan P; Sax, Hugo (2016). Transmission of mycobacterium chimaera from heater-cooler units during cardiac surgery despite an ultraclean air ventilation system. Emerging Infectious Diseases, 22(6):1008-1013.

Scherrer, Alexandra U; von Wyl, Viktor; Yang, Wan-Lin; Kouyos, Roger D; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Cavassini, Matthias; Battegay, Manuel; Furrer, Hansjakob; Calmy, Alexandra; Vernazza, Pietro; Bernasconi, Enos; Günthard, Huldrych F (2016). Emergence of acquired HIV-1 drug resistance almost stopped in Switzerland: A 15-year prospective cohort analysis. Clinical Infectious Diseases, 62(10):1310-1317.

Thiébaut, Rodolphe; Jarne, Ana; Routy, Jean-Pierre; Sereti, Irini; Fischl, Margaret; Ive, Prudence; Speck, Roberto F; D'Offizi, Gianpiero; Casari, Salvatore; Commenges, Daniel; Foulkes, Sharne; Natarajan, Ven; Croughs, Thérèse; Delfraissy, Jean-François; Tambussi, Guiseppe; Levy, Yves; Lederman, Michael M (2016). Repeated cycles of recombinant human interleukin 7 in HIV-infected patients with low CD4 t-cell reconstitution on antiretroviral therapy: results of 2 phase II multicenter studies. Clinical Infectious Diseases, 62(9):1178-1185.

De Luca, Andrea; Flandre, Philippe; Dunn, David; Zazzi, Maurizio; Wensing, Annemarie; Santoro, Maria Mercedes; Günthard, Huldrych F; Wittkop, Linda; Kordossis, Theodoros; Garcia, Federico; Castagna, Antonella; Cozzi-Lepri, Alessandro; Churchill, Duncan; De Wit, Stéphane; Brockmeyer, Norbert H; Imaz, Arkaitz; Mussini, Cristina; Obel, Niels; Perno, Carlo Federico; Roca, Bernardino; Reiss, Peter; Schülter, Eugen; Torti, Carlo; van Sighem, Ard; Zangerle, Robert; Descamps, Diane (2016). Improved darunavir genotypic mutation score predicting treatment response for patients infected with HIV-1 subtype B and non-subtype B receiving a salvage regimen. Journal of Antimicrobial Chemotherapy, 71(5):1352-1360.

van Herk, Wendy; el Helou, Salhab; Janota, Jan; Hagmann, Cornelia; Klingenberg, Claus; Staub, Eveline; Giannoni, Eric; Tissieres, Pierre; Schlapbach, Luregn J; van Rossum, Annemarie M C; Pilgrim, Sina B; Stocker, Martin (2016). Variation in Current Management of Term and Late-preterm Neonates at Risk for Early-onset Sepsis: An International Survey and Review of Guidelines. The Pediatric Infectious Disease Journal, 35(5):494-500.

Bostanci, Nagihan; Thurnheer, T; Belibasakis, G N; Curtis, M A; Kilian, M; Marsh, P D; Kinane, D F; Mombelli, A (2016). Tribute. Molecular Oral Microbiology, 31(3):205-206.

Metzner, Karin J (2016). HIV whole-genome sequencing now: answering still-open questions. Journal of Clinical Microbiology, 54(4):834-835.

Fehr, Jan; Nicca, Dunja; Goffard, Jean-Christophe; Haerry, David; Schlag, Michael; Papastamopoulos, Vasileios; Hoepelman, Andy; Skoutelis, Athanasius; Diazaraque, Ruth; Ledergerber, Bruno (2016). Reasons for not starting antiretroviral therapy in HIV-1-infected individuals: a changing landscape. Infection, 44(4):521-529.

Borel, Nicole; Leonard, Cory; Slade, Jessica; Schoborg, Robert V (2016). Chlamydial antibiotic resistance and treatment failure in veterinary and human medicine. Current Clinical Microbiology Reports, 3:10-18.

Noguera-Julian, M; Cozzi-Lepri, A; Di Giallonardo, F; Schuurman, R; Däumer, M; Aitken, S; Ceccherini-Silberstein, F; D'Arminio Monforte, A; Geretti, A M; Booth, C L; Kaiser, R; Michalik, C; Jansen, K; Masquelier, B; Bellecave, P; Kouyos, R D; Castro, E; Furrer, H; Schultze, A; Günthard, H F; Brun-Vezinet, F; Metzner, K J; Paredes, R (2016). Contribution of APOBEC3G/F activity to the development of low-abundance drug-resistant human immunodeficiency virus type 1 variants. Clinical Microbiology and Infection, 22(2):191-200.

Giannoni, Eric; Berger, Christoph; Stocker, Martin; Agyeman, Philipp; Posfay-Barbe, Klara M; Heininger, Ulrich; Konetzny, Gabriel; Niederer-Loher, Anita; Kahlert, Christian; Donas, Alex; Leone, Antonio; Hasters, Paul; Relly, Christa; Baer, Walter; Aebi, Christoph; Schlapbach, Luregn J (2016). Incidence and outcome of group B streptococcal sepsis in infants in Switzerland. The Pediatric Infectious Disease Journal, 35(2):222-224.

Schoster, Angelika; Staempfli, Henry (2016). Epidemiology and antimicrobial resistance in clostridium difficile with special reference to the horse. Current Clinical Microbiology Reports, 3(1):32-41.

Nüesch-Inderbinen, Magdalena; Stephan, Roger (2016). Epidemiology of extended-spectrum β-lactamase producing Escherichia coli in the human-livestock environment. Current Clinical Microbiology Reports, 3(1):1-9.

Marzel, Alex; Shilaih, Mohaned; Yang, Wan-Lin; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Braun, Dominique L; Calmy, Alexandra; Furrer, Hansjakob; Cavassini, Matthias; Battegay, Manuel; Vernazza, Pietro L; Bernasconi, Enos; Günthard, Huldrych F; Kouyos, Roger D; Swiss HIV Cohort Study (2016). HIV-1 transmission during recent infection and during treatment interruptions as major drivers of new infections in the Swiss HIV Cohort Study. Clinical Infectious Diseases, 62(1):115-122.

Mohanty, Soumitra; Dal Molin, Michael; Ganguli, Geetanjali; Padhi, Avinash; Jena, Prajna; Selchow, Petra; Sengupta, Srabasti; Meuli, Michael; Sander, Peter; Sonawane, Avinash (2016). Mycobacterium tuberculosis EsxO (Rv2346c) promotes bacillary survival by inducing oxidative stress mediated genomic instability in macrophages. Tuberculosis, 96:44-57.

Hombach, Michael; Ochoa, Carlos; Maurer, Florian P; Pfiffner, Tamara; Böttger, Erik C; Furrer, Reinhard (2016). Relative contribution of biological variation and technical variables to zone diameter variations of disc diffusion susceptibility testing. Journal of Antimicrobial Chemotherapy, 71(1):141-151.

Gautret, Philippe; Mockenhaupt, Frank P; von Sonnenburg, Frank; Rothe, Camilla; Libman, Michael; Van De Winkel, Kristina; Bottieau, Emmanuel; Grobusch, Martin P; Hamer, Davidson H; Esposito, Douglas H; Parola, Philippe; Schlagenhauf, Patricia; GeoSentinel Surveillance Network (2016). Schistosomiasis Screening of Travelers to Corsica, France. Emerging Infectious Diseases, 22(1):160-161.

Fehr, A; Ruetten, M; Seth-Smith, H; Nufer, Lisbeth; Voegtlin, A; Lehner, Angelika; Greub, Gilbert; Crosier, P; Neuhauss, S C F; Vaughan, Lloyd (2016). A zebrafish model for Chlamydia infection with the obligate intracellular pathogen Waddlia chondrophila. Frontiers in Microbiology:7:1829.

Sybesma, Wilbert; Zbinden, Reinhard; Chanishvili, Nino; Kutateladze, Mzia; Chkhotua, Archil; Ujmajuridze, Aleksandre; Mehnert, Ulrich; Kessler, Thomas M (2016). Bacteriophages as Potential Treatment for Urinary Tract Infections. Frontiers in Microbiology, 7:465.

Schulthess, Bettina; Bloemberg, Guido V; Zbinden, Andrea; Mouttet, Forouhar; Zbinden, Reinhard; Böttger, Erik C; Hombach, Michael (2016). Evaluation of the Bruker MALDI Biotyper for the identification of fastidious Gram-negative rods. Journal of Clinical Microbiology, 54(3):543-548.

Spitzen-van der Sluijs, Annemarieke; Martel, An; et al; Schmidt, B R (2016). Expanding Distribution of Lethal Amphibian Fungus Batrachochytrium salamandrivorans in Europe. Emerging Infectious Diseases, 22(7):1286-1288.

García, Patricia; Malorny, Burkhard; Rodicio, M Rosario; Stephan, Roger; Hächler, Herbert; Guerra, Beatriz; Lucarelli, Claudia (2016). Horizontal acquisition of a multidrug-resistance module (R-type ASSuT) is responsible for the monophasic phenotype in a widespread clone of Salmonella serovar 4,[5],12:i:. Frontiers in Microbiology, 7:680.

Meyer Sauteur, Patrick M; Unger, Wendy W J; Nadal, David; Berger, Christoph; Vink, Cornelis; van Rossum, Annemarie M C (2016). Infection with and carriage of Mycoplasma pneumoniae in children. Frontiers in Microbiology:7:329.

Pachathundikandi, Suneesh Kumar; Müller, Anne; Backert, Steffen (2016). Inflammasome activation by helicobacter pylori and its implications for persistence and immunity. In: Backert, Steffen. Inflammasome Signaling and Bacterial Infections. Germany: Springer, 117-131.

Schell, Ursula; Simon, Sylvia; Hilbi, Hubert (2016). Inflammasome recognition and regulation of the legionella flagellum. Current topics in microbiology and immunology, 397:161-181.

Thurnheer, T; Bostanci, N; Belibasakis, G N (2016). Microbial dynamics during conversion from supragingival to subgingival biofilms in an in vitro model. Molecular Oral Microbiology, 31(2):125-135.

Wiesmann, F; Naeth, G; Berger, A; Hirsch, H H; Regenass, S; Ross, R S; Sarrazin, C; Wedemeyer, H; Knechten, H; Braun, P (2016). Multicentric performance analysis of HCV quantification assays and its potential relevance for HCV treatment. Medical Microbiology and Immunology, 205(3):263-268.

Margot, Heike; Stephan, Roger; Tasara, Taurai (2016). Mungo bean sprout microbiome and changes associated with culture based enrichment protocols used in detection of Gram-negative foodborne pathogens. Microbiome, 4(1):48.

Heikinheimo, Annamari; Johler, Sophia; Karvonen, Laura; Julmi, Jérôme; Fredriksson-Ahomaa, Maria; Stephan, Roger (2016). New dominant spa type t2741 in livestock-associated MRSA (CC398-MRSA-V) in Finnish fattening pigs at slaughter. Antimicrobial Resistance and Infection Control, 5:6.

Arora, Natasha; Schuenemann, Verena J; Jäger, Günter; Peltzer, Alexander; Seitz, Alexander; Herbig, Alexander; Strouhal, Michal; Grillová, Linda; Sánchez-Busó, Leonor; Kühnert, Denise; Bos, Kirsten I; Davis, Leyla Rivero; Mikalová, Lenka; Bruisten, Sylvia; Komericki, Peter; French, Patrick; Grant, Paul R; Pando, María A; Vaulet, Lucía Gallo; Fermepin, Marcelo Rodríguez; Martinez, Antonio; Centurion Lara, Arturo; Giacani, Lorenzo; Norris, Steven J; Šmajs, David; Bosshard, Philipp P; González-Candelas, Fernando; Nieselt, Kay; Krause, Johannes; Bagheri, Homayoun C (2016). Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster. Nature Microbiology, 2:16245.

Leonard, Cory Ann; Dewez, Frederic; Borel, Nicole (2016). Penicillin g-induced chlamydial stress response in a porcine strain of chlamydia pecorum. International Journal of Microbiology, 2016:3832917.

Quiblier, Chantal; Jetter, Marion; Rominski, Mark; Mouttet, Forouhar; Böttger, Erik C; Keller, Peter M; Hombach, Michael (2016). Performance of copan WASP for routine urine microbiology. Journal of Clinical Microbiology, 54(3):585-592.

Tschopp, Clément; Schneider, Alexis; Longtin, Yves; Renzi, Gesuele; Schrenzel, Jacques; Pittet, Didier (2016). Predictors of heavy stethoscope contamination following a physical examination. Infection Control and Hospital Epidemiology, 37(06):673-679.

Nüesch-Inderbinen, Magdalena; Heini, Nicole; Zurfluh, Katrin; Althaus, Denise; Hächler, Herbert; Stephan, Roger (2016). Shigella antimicrobial drug resistance mechanisms, 2004–2014. Emerging Infectious Diseases, 22(6):1083-1085.

Rampini, Silvana K; Zbinden, Andrea; Speck, Roberto F; Bloemberg, Guido V (2016). Similar efficacy of broad-range ITS PCR and conventional fungal culture for diagnosing fungal infections in non-immunocompromised patients. BMC Microbiology, 16(1):132.

Rigouts, L; Coeck, N; Gumusboga, M; de Rijk, W B; Aung, K J M; Hossain, M A; Fissette, K; Rieder, Hans L; Meehan, C J; de Jong, B C; Van Deun, A (2016). Specific gyrA gene mutations predict poor treatment outcome in MDR-TB. Journal of Antimicrobial Chemotherapy, 71(2):314-323.

Merz, Axel; Stephan, Roger; Johler, Sophia (2016). Staphylococcus aureus isolates from goat and sheep milk seem to be closely related and differ from isolates detected among bovine milk. Frontiers in Microbiology, 7:319.

2015

Vayssier-Taussat, Muriel; Kazimirova, Maria; Hubalek, Zdenek; Hornok, Sándor; Farkas, Robert; Cosson, Jean-François; Bonnet, Sarah; Vourch, Gwenaël; Gasqui, Patrick; Mihalca, Andrei Daniel; Plantard, Olivier; Silaghi, Cornelia; Cutler, Sally; Rizzoli, Annapaola (2015). Emerging horizons for tick-borne pathogens: from the 'one pathogen-one disease' vision to the pathobiome paradigm. Future Microbiology, 10:2033-2043.

Hombach, Michael; von Gunten, Barbara; Castelberg, Claudio; Bloemberg, Guido V (2015). Evaluation of the Rapidec Carba NP test for detection of Carbapenemases in Enterobacteriaceae. Journal of Clinical Microbiology, 53(12):3828-2833.

Hombach, Michael; Maurer, Florian P; Pfiffner, Tamara; Böttger, Erik C; Furrer, Reinhard (2015). Standardization of operator-dependent variables affecting precision and accuracy of the disk diffusion method for antibiotic susceptibility testing. Journal of Clinical Microbiology, 53(12):3864-3869.

Brandenberg, Oliver F; Magnus, Carsten; Regoes, Roland R; Trkola, Alexandra (2015). The HIV-1 entry process: A stoichiometric view. Trends in Microbiology, 23(12):763-774.

Koch, Katrin N; Müller, Anne (2015). Helicobacter pylori activates the TLR2/NLRP3/caspase-1/IL-18 axis to induce regulatory T-cells, establish persistent infection and promote tolerance to allergens. Gut Microbes, 6(6):382-387.

Kurth, Florian; Develoux, Michel; Mechain, Matthieu; Clerinx, Jan; et al (2015). Intravenous Artesunate Reduces Parasite Clearance Time, Duration of Intensive Care, and Hospital Treatment in Patients With Severe Malaria in Europe: The TropNet Severe Malaria Study. Clinical Infectious Diseases, 61(9):1441-4.

Young, Jim; Moodie, Erica E M; Abrahamowicz, Michal; Klein, Marina B; Weber, Rainer; Bucher, Heiner C (2015). Incomplete modeling of the effect of antiretroviral therapy on the risk of cardiovascular events. Clinical Infectious Diseases, 61(7):1206-1207.

Beeler, Patrick E; Kuster, Stefan P; Eschmann, Emmanuel; Weber, Rainer; Blaser, Jürg (2015). Earlier switching from intravenous to oral antibiotics owing to electronic reminders. International Journal of Antimicrobial Agents, 46(4):428-433.

Gautret, Philippe; Mockenhaupt, Frank P; von Sonnenburg, Frank; Rothe, Camilla; Libman, Michael; Van De Winkel, Kristina; Bottieau, Emmanuel; Grobusch, Martin P; Hamer, Davidson H; Esposito, Douglas H; Parola, Philippe; Schlagenhauf, Patricia (2015). Local and International Implications of Schistosomiasis Acquired in Corsica, France. Emerging Infectious Diseases, 21(10):1865-1868.

Salmon, S; Pittet, D; Sax, H; McLaws, M L (2015). The 'My five moments for hand hygiene' concept for the overcrowded setting in resource-limited healthcare systems. Journal of Hospital Infection, 91(2):95-99.

Lewandowska, Dagmara W; Zagordi, Osvaldo; Zbinden, Andrea; Schuurmans, Macé M; Schreiber, Peter; Geissberger, Fabienne-Desirée; Huder, Jon B; Böni, Jürg; Benden, Christian; Mueller, Nicolas J; Trkola, Alexandra; Huber, Michael (2015). Unbiased metagenomic sequencing complements specific routine diagnostic methods and increases chances to detect rare viral strains. Diagnostic Microbiology and Infectious Disease, 83(2):133-138.

Braun, Dominique L; Kouyos, Roger D; Balmer, Belinda; Grube, Christina; Weber, Rainer; Günthard, Huldrych F (2015). Frequency and spectrum of unexpected clinical manifestations of primary HIV-1 infection. Clinical Infectious Diseases, 61(6):1013-1021.

Yang, Wan-Lin; Kouyos, Roger D; Scherrer, Alexandra U; Böni, Jürg; Shah, Cyril; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Hirzel, Cédric; Battegay, Manuel; Cavassini, Matthias; Bernasconi, Enos; Vernazza, Pietro; Held, Leonhard; Ledergerber, Bruno; Günthard, Huldrych F (2015). Assessing efficacy of different nucleos(t)ide backbones in NNRTI-containing regimens in the swiss HIV cohort study. Journal of Antimicrobial Chemotherapy:3323-3331.

Leuthard, Deborah; Berger, Christoph; Staubli, Georg; Nadal, David; Schmid, Sabine; Hamer, David; Weber, Rainer; Schlagenhauf, Patricia (2015). Management of children with travel-related illness evaluated in a pediatric emergency room. The Pediatric Infectious Disease Journal, 34(12):1279-1282.

Kouyos, Roger D; Günthard, Huldrych F (2015). Editorial commentary: the irreversibility of HIV drug resistance. Clinical Infectious Diseases, 61(5):837-839.

Welte, René; Eschertzhuber, Stephan; Weiler, Stefan; Leitner-Rupprich, Sandra; Aigner, Maria; Lass-Flörl, Cornelia; Stienecke, Eva; Bellmann-Weiler, Rosa; Joannidis, Michael; Bellmann, Romuald (2015). Biliary amphotericin B pharmacokinetics and pharmacodynamics in critically ill liver transplant recipients receiving treatment with amphotericin B lipid formulations. International Journal of Antimicrobial Agents, 46(3):325-331.

Trück, Johannes; Thompson, Ameeka; Dwivedi, Reena; Segal, Shelley; Anand, Geetha; Kelly, Dominic F (2015). Nonotogenic skull base osteomyelitis in children: two cases and a review of the literature. The Pediatric Infectious Disease Journal, 34(9):1025-1027.

Birger, Ruthie B; Kouyos, Roger D; Cohen, Ted; Griffiths, Emily C; Huijben, Silvie; Mina, Michael; Volkova, Victoriya; Grenfell, Bryan; Metcalf, C Jessica E (2015). The potential impact of coinfection on antimicrobial chemotherapy and drug resistance. Trends in Microbiology, 23(9):537-44.

Belibasakis, G N; Kast, Jeannette I; Thurnheer, Thomas; Akdis, Cezmi A; Bostanci, Nagihan (2015). The expression of gingival epithelial junctions in response to subgingival biofilms. Virulence, 6(7):704-709.

Achermann, Yvonne; Seidl, Kati; Kuster, Stefan P; Leimer, Nadja; Durisch, Nina; Ajdler-Schäffler, Evelyne; Karrer, Stephan; Senn, Gabriela; Holzmann-Bürgel, Anne; Wolfensberger, Aline; Leone, Antonio; Arlettaz, Romaine; Zinkernagel, Annelies S; Sax, Hugo (2015). Epidemiology of Methicillin-Susceptible Staphylococcus aureus in a Neonatology Ward. Infection Control and Hospital Epidemiology:1-8.

Wójtowicz, Agnieszka; Lecompte, T Doco; Bibert, Stephanie; Manuel, Oriol; Rüeger, Sina; Berger, Christoph; Boggian, Katia; Cusini, Alexia; Garzoni, Christian; Hirsch, Hans; Khanna, Nina; Mueller, Nicolas J; Meylan, Pascal R; Pascual, Manuel; van Delden, Christian; Bochud, Pierre-Yves (2015). PTX3 Polymorphisms and Invasive Mold Infections After Solid Organ Transplant. Clinical Infectious Diseases, 61(4):619-622.

Pospischil, A (2015). Human and animal health on three continents--a biography of the early life of Karl Friedrich Meyer (1884-1974). Foodborne Pathogens and Disease, 73(6):ftv039.

San Millan, Alvaro; Toll-Riera, Macarena; Escudero, Jose Antonio; Cantón, Rafael; Coque, Teresa M; MacLean, R Craig (2015). Sequencing of plasmids pAMBL1 and pAMBL2 fromPseudomonas aeruginosareveals ablaVIM-1amplification causing high-level carbapenem resistance. Journal of Antimicrobial Chemotherapy, 70(11):3000-3003.

Franco, L; Pagan, I; Serre Del Cor, N; Schunk, M; Neumayr, A; Molero, F; Potente, A; Hatz, Christoph; Wilder-Smith, A; Sánchez-Seco, M P; Tenorio, A (2015). Molecular epidemiology suggests Venezuela as the origin of the dengue outbreak in Madeira, Portugal in 2012-2013. Clinical Microbiology and Infection, 21(7):713.e5-718.

König, R; Stertz, S (2015). Recent strategies and progress in identifying host factors involved in virus replication. Current Opinion in Microbiology, (26):79-88.

Valsesia, Giorgia; Roos, Malgorzata; Böttger, Erik C; Hombach, Michael (2015). A statistical approach for determination of disk diffusion-based cutoff values for systematic characterization of wild-type and non-wild-type bacterial populations in antimicrobial susceptibility testing. Journal of Clinical Microbiology, 53(6):1812-1822.

Krengel, Annika; Cattori, Valentino; Meli, Marina L; Wachter, Bettina; Böni, Jürg; Bisset, Leslie R; Thalwitzer, Susanne; Melzheimer, Jörg; Jago, Mark; Hofmann-Lehmann, Regina; Hofer, Heribert; Lutz, Hans (2015). Gammaretrovirus-specific antibodies in free-ranging and captive Namibian cheetahs. Clinical and Vaccine Immunology, 22(6):611-617.

Osterhoff, Georg; Burla, Laurin; Werner, Clément M L; Jentzsch, Thorsten; Wanner, Guido A; Simmen, Hans-Peter; Sprengel, Kai (2015). Role of Pre-Operative Blood Transfusion and Subcutaneous Fat Thickness as Risk Factors for Surgical Site Infection after Posterior Thoracic Spine Stabilization. Surgical Infections, 16(3):333-337.

Valsesia, Giorgia; Hombach, Michael; Maurer, Florian P; Courvalin, Patrice; Roos, Malgorzata; Böttger, Erik C (2015). The Resistant-Population Cutoff (RCOFF): a new concept for improved characterization of antimicrobial susceptibility patterns of non-wild-type bacterial populations. Journal of Clinical Microbiology, 53(6):1806-1811.

Brunet, Julie; Benoilid, Aurélien; Kremer, Stéphane; Dalvit, Constanza; Lefebvre, Nicolas; Hansmann, Yves; Chenard, Marie-Pierre; Mathieu, Bruno; Grimm, Felix; Deplazes, Peter; Pfaff, Alexander W; Abou-Bacar, Ahmed; Marescaux, Christian; Candolfi, Ermanno (2015). First case of human cerebral Taenia martis cysticercosis. Journal of Clinical Microbiology, 53(8):2756-2759.

Maurer, Florian P; Bruderer, Vera L; Castelberg, Claudio; Ritter, Claudia; Scherbakov, Dimitri; Bloemberg, Guido V; Böttger, Erik C (2015). Aminoglycoside-modifying enzymes determine the innate susceptibility to aminoglycoside antibiotics in rapidly growing mycobacteria. Journal of Antimicrobial Chemotherapy, 70(5):1412-1419.

Salata, Cristiano; Baritussio, Aldo; Munegato, Denis; Calistri, Arianna; Ha, Huy Riem; Bigler, Laurent; Fabris, Fabrizio; Parolin, Cristina; Palu, Giorgio; Mirazimi, Ali (2015). Amiodarone and metabolite MDEA inhibit Ebola virus infection by interfering with the viral entry process. FEMS Pathogens and Disease, 73(5):ftv032-ftv032.

Abdelhady, Wessam; Chen, Liang; Bayer, Arnold S; Seidl, Kati; Yeaman, Michael R; Kreiswirth, Barry N; Xiong, Yan Q (2015). Early agr activation correlates with vancomycin treatment failure in multi-clonotype MRSA endovascular infections. Journal of Antimicrobial Chemotherapy, 70(5):1443-1452.

Achermann, Yvonne; Tran, Bao; Kang, Misun; Harro, Janette M; Shirtliff, Mark E (2015). Immunoproteomic identification of in vivo-produced propionibacterium acnes proteins in a rabbit biofilm infection model. Clinical and Vaccine Immunology, 22(5):467-476.

Lopez, Rodrigo; Hujoel, Philippe; Belibasakis, Georgios N (2015). On putative periodontal pathogens: an epidemiological perspective. Virulence, 6(3):249-257.

Schindler, V M; Jaeger, V K; Held, Leonhard; Hatz, Christoph; Bühler, Silja (2015). Travel style is a major risk factor for diarrhoea in India: a prospective cohort study. Clinical Microbiology and Infection, 21(7):676.e1-676.e4.

Belibasakis, Georgios N; Mylonakis, Eleftherios (2015). Oral infections: clinical and biological perspectives. Virulence, 6(3):173-176.

Sparber, Florian; LeibundGut-Landmann, Salomé (2015). Interleukin 17-mediated host defense against candida albicans. Pathogens, 4:606-619.

Bostanci, Nagihan; Bao, Kai; Wahlander, Asa; Grosmann, Jonas; Thurnheer, Thomas; Belibasakis, Georgios N (2015). Secretome of gingival epithelium in response to subgingival biofilms. Molecular Oral Microbiology, 30(4):323-335.

Sax, Hugo; Bloemberg, Guido; Hasse, Barbara; Sommerstein, Rami; Kohler, Philipp; Achermann, Yvonne; Rössle, Matthias; Falk, Volkmar; Kuster, Stefan P; Böttger, Erik C; Weber, Rainer (2015). Prolonged Outbreak of Mycobacterium chimaera Infection After Open-Chest Heart Surgery. Clinical Infectious Diseases, 61(1):67-75.

Cambau, E; Viveiros, M; Machado, D; Raskine, L; Ritter, C; Tortoli, E; Matthys, V; Hoffner, S; Richter, E; Perez Del Molino, M L; Cirillo, D M; van Soolingen, D; Böttger, E C (2015). Revisiting susceptibility testing in MDR-TB by a standardized quantitative phenotypic assessment in a European multicentre study. Journal of Antimicrobial Chemotherapy, 70(3):686-696.

Charalampakis, Georgios; Belibasakis, Georgios N (2015). Microbiome of peri-implant infections: lessons from conventional, molecular and metagenomic analyses. Virulence, 6(3):183-187.

Zehnder, Matthias; Belibasakis, Georgios N (2015). On the dynamics of root canal infections - what we understand and what we don't. Virulence, 6(3):216-222.

Gillespie, Stephen H; Ling, Clare L; Oravcova, Katarina; Pinheiro, Miguel; Wells, Louise; Bryant, Josephine M; McHugh, Timothy D; Bébéar, Cecile; Webster, David; Harris, Simon R; Seth-Smith, Helena M B; Thomson, Nicholas R (2015). Genomic Investigations unmask Mycoplasma amphoriforme, a new respiratory pathogen. Clinical Infectious Diseases, 60(3):381-388.

Nemeth, Johannes; Oesch, Gabriela; Kuster, Stefan P (2015). Bacteriostatic versus bactericidal antibiotics for patients with serious bacterial infections: systematic review and meta-analysis. Journal of Antimicrobial Chemotherapy, 70(2):382-395.

Hürlimann, David; Limacher, Andreas; Schabel, Maria; Zanetti, Giorgio; Berger, Christoph; Mühlemann, Kathrin; Kronenberg, Andreas; Swiss Sentinel Working Group (2015). Improvement of antibiotic prescription in outpatient care: a cluster-randomized intervention study using a sentinel surveillance network of physicians. Journal of Antimicrobial Chemotherapy, 70(2):602-608.

Latus, J; Kitterer, D; Segerer, S; Artunc, F; Alscher, M D; Braun, N (2015). Severe thrombocytopenia in hantavirus-induced nephropathia epidemica. Infection, 43(1):83-87.

Nurjadi, D; Friedrich-Jänicke, B; Schäfer, J; Van Genderen, P J J; Goorhuis, A; Perignon, A; Neumayr, A; Mueller, A; Kantele, A; Schunk, M; Gascon, J; Stich, A; Hatz, Christoph; Caumes, E; Grobusch, M P; Fleck, R; Mockenhaupt, F P; Zanger, P (2015). Skin and soft tissue infections in intercontinental travellers and the import of multi-resistant Staphylococcus aureus to Europe. Clinical Microbiology and Infection, 21(6):567.e1-567.e10.

Bao, Kai; Papadimitropoulos, Adam; Akgül, Baki; Belibasakis, Georgios N; Bostanci, Nagihan (2015). Establishment of an oral infection model resembling the periodontal pocket in a perfusion bioreactor system. Virulence, 6(3):265-273.

Latus, Joerg; Schwab, Matthias; Tacconelli, Evelina; Pieper, Friedrich-Michael; Wegener, Daniel; Dippon, Juergen; Müller, Simon; Zakim, David; Segerer, Stephan; Kitterer, Daniel; Priwitzer, Martin; Mezger, Barbara; Walter-Frank, Birgit; Corea, Angela; Wiedenmann, Albrecht; Brockmann, Stefan; Pöhlmann, Christoph; Alscher, M Dominik; Braun, Niko (2015). Clinical course and long-term outcome of hantavirus-associated nephropathia epidemica, Germany. Emerging Infectious Diseases, 21(1):76-83.

Origgi, Francesco C; König, Barbara; Lindholm, Anna K; Mayor, Désirée; Pilo, Paola (2015). Tularemia among Free-Ranging Mice without Infection of Exposed Humans, Switzerland, 2012. Emerging Infectious Diseases, 21(1):133-135.

Zurfluh, Katrin; Power, Karen A; Klumpp, Jochen; Wang, J; Fanning, Séamus; Stephan, Roger (2015). A novel Tn3-like composite transposon harbouring blaVIM-1 in Klebsiella pneumoniae ssp. pneumoniae isolated from river water. Microbial Drug Resistance, 21(1):43-49.

Grant, Dawn M; Dagleish, Mark P; Bachofen, Claudia; Boag, Brian; Deane, David; Percival, Ann; Zadoks, Ruth N; Russell, George C (2015). Assessment of the rabbit as a wildlife reservoir of bovine viral diarrhea virus: serological analysis and generation of trans-placentally infected offspring. Frontiers in Microbiology:6:1000.

Wang, J; Stephan, Roger; Zurfluh, Katrin; Hächler, Herbert; Fanning, Séamus (2015). Characterization of the genetic environment of bla ESBL genes, integrons and toxin-antitoxin systems identified on large transferrable plasmids in multi-drug resistant Escherichia coli. Frontiers in Microbiology, 5:716.

Seidl, Kati; Leimer, Nadja; Palheiros Marques, Miguel; Furrer, Alexandra; Holzmann-Bürgel, Anne; Senn, Gabriela; Zbinden, Reinhard; Zinkernagel, Annelies S (2015). Clonality and antimicrobial susceptibility of methicillin-resistant Staphylococcus aureus at the University Hospital Zurich, Switzerland between 2012 and 2014. Annals of Clinical Microbiology and Antimicrobials, 14(14):online.

Münz, Christian (2015). EBV Infection of Mice with Reconstituted Human Immune System Components. Current topics in microbiology and immunology, 391:407-423.

Li, Shuo; Plebanski, Magdalena; Smooker, Peter; Gowans, Eric J (2015). Editorial: why vaccines to HIV, HCV, and Malaria have so far failed—challenges to developing vaccines against immunoregulating pathogens. Frontiers in Microbiology, 6:1318.

Zurfluh, Katrin; Nüesch-Inderbinen, Magdalena; Poirel, Laurent; Nordmann, Patrice; Hächler, Herbert; Stephan, Roger (2015). Emergence of Escherichia coli producing OXA-48 beta-lactamase in the community in Switzerland. Antimicrobial Resistance and Infection Control, 4(9):online.

Wolfensberger, Aline; Durisch, Nina; Mertin, Juliane; Ajdler-Schaeffler, Evelyne; Sax, Hugo (2015). Evaluating the tolerability and acceptability of an alcohol-based hand rub - real-life experience with the WHO protocol. Antimicrobial Resistance and Infection Control, 4(18):online.

Maurer, Florian P; Castelberg, Claudio; Quiblier, Chantal; Bloemberg, Guido V; Hombach, Michael (2015). Evaluation of carbapenemase screening and confirmation tests in Enterobacteriaceae and development of a practical diagnostic algorithm. Journal of Clinical Microbiology, 53(1):95-104.

Zurfluh, Katrin; Poirel, Laurent; Nordmann, Patrice; Klumpp, Jochen; Stephan, Roger (2015). First detection of Klebsiella variicola producing OXA-181 carbapenemase in fresh vegetable imported from Asia to Switzerland. Antimicrobial Resistance and Infection Control, 4(38):online.

Neuenschwander, Stefan M; Salcher, Michaela M; Pernthaler, Jakob (2015). Fluorescence in situ hybridization and sequential catalyzed reporter deposition (2C-FISH) for the flow cytometric sorting of freshwater ultramicrobacteria. Frontiers in Microbiology, 6:247.

Opota, Onya; Vanrompay, Daisy; Greub, Gilbert; Branley, James; Longbottom, David; Erard, Veronique; Jaton, Katia; Borel, Nicole (2015). Improving the molecular diagnosis of Chlamydia psittaci and Chlamydia abortus infection with a species-specific duplex real-time PCR. Journal of Medical Microbiology, 64(10):1174-1185.

Lünemann, Anna; Rowe, Martin; Nadal, David (2015). Innate Immune Recognition of EBV. In: Münz, Christian. Epstein Barr Virus Volume 2 : One Herpes Virus: Many Diseases. Switzerland: Springer, 265-287.

Thurnheer, Thomas; Belibasakis, Georgios N (2015). Integration of non-oral bacteria into in vitro oral biofilms. Virulence, 6(3):258-264.

Cozzi-Lepri, Alessandro; Noguera-Julian, Marc; Di Giallonardo, Francesca; Schuurman, Rob; Däumer, Martin; Aitken, Sue; Ceccherini-Silberstein, Francesca; D'Arminio Monforte, Antonella; Geretti, Anna Maria; Booth, Clare L; Kaiser, Rolf; Michalik, Claudia; Jansen, Klaus; Masquelier, Bernard; Bellecave, Pantxika; Kouyos, Roger D; Castro, Erika; Furrer, Hansjakob; Schultze, Anna; Günthard, Huldrych F; Brun-Vezinet, Francoise; Paredes, Roger; Metzner, Karin J (2015). Low-frequency drug-resistant HIV-1 and risk of virological failure to first-line NNRTI-based ART: a multicohort European case-control study using centralized ultrasensitive 454 pyrosequencing. Journal of Antimicrobial Chemotherapy, 70(3):930-940.

Sax, H; Clack, L (2015). Mental models: a basic concept for human factors design in infection prevention. Journal of Hospital Infection, 89(4):335-339.

Nurjadi, D; Schäfer, J; et al; Hatz, Christoph (2015). Predominance of dfrG as determinant of trimethoprim resistance in imported Staphylococcus aureus. Clinical Microbiology and Infection, 21(12):1095.e5-1095.e9.

Münz, Christian (2015). Preface. Current topics in microbiology and immunology, 390(Pt 1):v-vi.

Nüesch-Inderbinen, Magdalena; Funk, J; Cernela, Nicole; Tasara, Taurai; Klumpp, Jochen; Schmidt, Herbert; Stephan, Roger (2015). Prevalence of Subtilase cytotoxin-encoding subAB variants among Shiga toxin-producing Escherichia coli strains isolated from wild ruminants and sheep differs from that of cattle and pigs and is predominated by the new allelic variant subAB2-2. International Journal of Medical Microbiology : IJMM, 305(1):124-128.

Hicks, Chelsea A E; Willi, Barbara; Riond, Barbara; Novacco, Marilisa; Meli, Marina L; Stokes, Christopher R; Helps, Christopher R; Hofmann-Lehmann, Regina; Tasker, Séverine (2015). Protective immunity against infection with Mycoplasma haemofelis. Clinical and Vaccine Immunology, 22(1):108-118.

Herweg, Jo-Ana; Hansmeier, Nicole; Otto, Andreas; Geffken, Anna C; Subbarayal, Prema; Prusty, Bhupesh K; Becher, Dörte; Hensel, Michael; Schaible, Ulrich E; Rudel, Thomas; Hilbi, Hubert (2015). Purification and proteomics of pathogen-modified vacuoles and membranes. Frontiers in Cellular and Infection Microbiology, 5:48.

Wójtowicz, Agnieszka; Lecompte, Thanh Doco; Bibert, Stéphanie; Manuel, Oriol; Rüeger, Sina; Berger, Christoph; Boggian, Katia; Cusini, Alexia; Garzoni, Christian; Khanna, Nina; Mueller, Nicolas J; Meylan, Pascal R; Pascual, Manuel; van Delden, Christian; Bochud, Pierre-Yves; Swiss Transplant Cohort Study (2015). Reply to Cunha et al. Clinical Infectious Diseases, 61(12):1894-1895.

Schmidlin, Patrick R; Fachinger, Patrick; Tini, Gabrielo; Graber, Sereina; Seifert, Burkhardt; Dombrowa, Sylke; Irani, Sarosh (2015). Shared microbiome in gums and the lung in an outpatient population. Journal of Infection, 70(3):255-263.

Guyer, Anouk; De Vrieze, Mout; Bönisch, Denise; Gloor, Ramona; Musa, Tomke; Bodenhausen, Natacha; Bailly, Aurélien; Weisskopf, Laure (2015). The anti-phytophthora effect of selected potato-associated pseudomonas strains: from the laboratory to the field. Frontiers in Microbiology, 6:1309.

Zbinden, A; Bostanci, N; Belibasakis, G N (2015). The novel species Streptococcus tigurinus and its association with oral infection. Virulence, 6(3):177-182.

Taylor-Brown, Alyce; Vaughan, Lloyd; Greub, Gilbert; Timms, Peter; Polkinghorne, Adam (2015). Twenty years of research into Chlamydia-like organisms: a revolution in our understanding of the biology and pathogenicity of members of the phylum Chlamydiae. FEMS Pathogens and Disease, 73(1):1-15.

Steppacher, Anna Christina Lara. Unrecognized pediatric adult-type tuberculosis puts school contacts at risk. 2015, University of Zurich, Faculty of Medicine.

Zoufaly, A; Jochum, J; Hammerl, R; Nassimi, N; Raymond, Y; Burchard, G D; Schmiedel, S; Drexler, J F; Campbell, N K; Taka, N; Awasom, C; Metzner, K J; van Lunzen, J; Feldt, T (2015). Virological failure after 1 year of first-line ART is not associated with HIV minority drug resistance in rural Cameroon. Journal of Antimicrobial Chemotherapy, 70(3):922-925.

De Vrieze, Mout; Pandey, Piyush; Bucheli, Thomas D; Varadarajan, Adithi R; Ahrens, Christian H; Weisskopf, Laure; Bailly, Aurélien (2015). Volatile organic compounds from native potato-associated pseudomonas as potential anti-oomycete agents. Frontiers in Microbiology, 6:1295.

2014

Dudnik, Alexey; Dudler, Robert (2014). Virulence determinants of Pseudomonas syringae strains isolated from grasses in the context of a small type III effector repertoire. BMC Microbiology, 14:304.

Glatz, M; Juricevic, N; Altwegg, M; Bruisten, S; Komericki, P; Lautenschlager, S; Weber, R; Bosshard, P P (2014). A multicenter prospective trial to asses a new real-time polymerase chain reaction for detection of Treponema pallidum, herpes simplex-1/2 and Haemophilus ducreyi in genital, anal and oropharyngeal ulcers. Clinical Microbiology and Infection, 20(12):O1020-7.

De Respinis, Sophie; Monnin, Valérie; Girard, Victoria; Welker, Martin; Arsac, Maud; Cellière, Béatrice; Durand, Géraldine; Bosshard, Philipp P; Farina, Claudio; Passera, Marco; Van Belkum, Alex; Petrini, Orlando; Tonolla, Mauro (2014). Matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry using the Vitek MS system for rapid and accurate identification of dermatophytes on solid cultures. Journal of Clinical Microbiology, 52(12):4286-4292.

Spuesens, Emiel B M; Meyer Sauteur, Patrick M; Vink, Cornelis; van Rossum, Annemarie M C (2014). Mycoplasma pneumoniae infections – Does treatment help? Journal of Infection, 69 Suppl:S42-S46.

Bao, Kai; Belibasakis, Georgios N; Thurnheer, Thomas; Aduse-Opoku, Joseph; Curtis, Michael A; Bostanci, Nagihan (2014). Role of Porphyromonas gingivalis gingipains in multi-species biofilm formation. BMC Microbiology, 14(1):258.

Maurer, Florian P; Courvalin, Patrice; Böttger, Erik C; Hombach, Michael (2014). Integrating forecast probabilities in antibiograms: a way to guide antimicrobial prescriptions more reliably? Journal of Clinical Microbiology, 52(10):3674-3684.

Wennerås, Christine; Bloemberg, Guido; Bogdan, Christian (2014). Reply to Raoult. Clinical Infectious Diseases, 59(7):1042-1043.

Sospedra, Mireia; Schippling, Sven; Yousef, Sara; Jelcic, Ilijas; Bofill-Mas, Silvia; Planas, Raquel; Stellmann, Jan-Patrick; Demina, Viktoria; Cinque, Paola; Garcea, Robert; Croughs, Therese; Girones, Rosina; Martin, Roland (2014). Treating progressive multifocal leukoencephalopathy with interleukin 7 and vaccination with JC virus capsid protein VP1. Clinical Infectious Diseases, 59(11):1588-1592.

Arab-Alameddine, M; Lubomirov, R; Fayet-Mello, A; Aouri, M; Rotger, M; Buclin, T; Widmer, N; Gatri, M; Ledergerber, B; Rentsch, K; Cavassini, M; Panchaud, A; Guidi, M; Telenti, A; Décosterd, L A; Csajka, C (2014). Population pharmacokinetic modelling and evaluation of different dosage regimens for darunavir and ritonavir in HIV-infected individuals. Journal of Antimicrobial Chemotherapy, 69(9):2489-2498.

Kohler, Ines; Scherrer, A U; Zagordi, O; Bianchi, M; Wyrzucki, A; Steck, M; Ledergerber, B; Gunthard, H F; Hangartner, L (2014). Prevalence and predictors for homo- and heterosubtypic antibodies against influenza a virus. Clinical Infectious Diseases, 59(10):1386-1393.

Näf, Franziska; Enzler-Tschudy, Annette; Kuster, Stefan P; Uhlig, Isabell; Steffen, Thomas (2014). Abdominal actinomycosis mimicking a malignant neoplasm. Surgical Infections, 15(4):462-463.

Kaiser, P; Maggio, E M; Pfammatter, T; Misselwitz, B; Flury, S; Schneider, P M; Dutkowski, P; Breitenstein, S; Müllhaupt, B; Clavien, P A; Mueller, N J (2014). Histopathological evidence of invasive gastric mucormycosis after transarterial chemoembolization and liver transplantation. Infection, 42(4):779-83.

Clack, Lauren; Schmutz, Jan; Manser, Tanja; Sax, Hugo (2014). Infectious risk moments: a novel, human factors-informed approach to infection prevention. Infection Control and Hospital Epidemiology, 35(8):1051-1055.

Schulthess, Bettina; Ledermann, Raphael; Mouttet, Forouhar; Zbinden, Andrea; Bloemberg, Guido V; Böttger, Erik C; Hombach, Michael (2014). Use of the Bruker MALDI Biotyper for identification of molds in the clinical mycology laboratory. Journal of Clinical Microbiology, 52(8):2797-2803.

Borel, N; Pospischil, A; Hudson, A P; Rupp, J; Schoborg, R V (2014). The role of viable but non-infectious developmental forms in chlamydial biology. Frontiers in Cellular and Infection Microbiology:4:97.

Selva, Laura; Berger, Christoph; Garcia-Garcia, Juan Jose; de Paz, Hector; Nadal, David; Muñoz-Almagro, Carmen (2014). Direct identification of Streptococcus pneumoniae Capsular types in pleural fluids by using multiplex PCR combined with automated fluorescence-based capillary electrophoresis. Journal of Clinical Microbiology, 52(7):2736-2737.

Achermann, Yvonne; Goldstein, Ellie J C; Coenye, Tom; Shirtliff, Mark E (2014). Propionibacterium acnes: from commensal to opportunistic biofilm-associated implant pathogen. Clinical Microbiology Reviews, 27(3):419-440.

Zingg, Walter; Huttner, Benedikt D; Sax, Hugo; Pittet, Didier (2014). Assessing the burden of healthcare-associated infections through prevalence studies: what is the best method? Infection Control and Hospital Epidemiology, 35(6):674-684.

Achermann, Y; Stasch, P; Preiss, S; Lucke, K; Vogt, M (2014). Characteristics and treatment outcomes of 69 cases with early prosthetic joint infections of the hip and knee. Infection, 42(3):511-519.

Meyer Sauteur, Patrick M; van Rossum, Annemarie M C; Vink, Cornelis (2014). Mycoplasma pneumoniae in children: carriage, pathogenesis, and antibiotic resistance. Current Opinion in Infectious Diseases, 27(3):220-227.

Landelle, Caroline; Iten, Anne; Uçkay, Ilker; Sax, Hugo; Camus, Véronique; Cohen, Gilles; Renzi, Gesuele; Schrenzel, Jacques; Pittet, Didier; Perrier, Arnaud; Harbarth, Stephan (2014). Does colonization with methicillin-susceptible Staphylococcus aureus protect against nosocomial acquisition of methicillin-resistant S. aureus? Infection Control and Hospital Epidemiology, 35(5):527-533.

Wilson, Mary E; Chen, Lin H; Han, Pauline V; Keystone, Jay S; Cramer, Jakob P; Segurado, Aluisio; Hale, DeVon; Jensenius, Mogens; Schwartz, Eli; von Sonnenburg, Frank; Leder, Karin (2014). Illness in travelers returned from Brazil: the GeoSentinel experience and implications for the 2014 FIFA World Cup and the 2016 Summer Olympics. Clinical Infectious Diseases, 58(10):1347-1356.

Müller, Mattia; Schlagenhauf, Patricia (2014). Plasmodium knowlesi in travellers, update 2014. International Journal of Infectious Diseases, 22:55-64.

Swenson, L C; Cobb, B; Geretti, A M; et al; Böni, J (2014). Comparative Performances of HIV-1 RNA Load Assays at Low Viral Load Levels: Results of an International Collaboration. Journal of Clinical Microbiology, 52(2):517-523.

Kost, Thomas; Stopnisek, Nejc; Agnoli, Kirsty; Eberl, Leo; Weisskopf, Laure (2014). Oxalotrophy, a widespread trait of plant-associated Burkholderia species, is involved in successful root colonization of lupin and maize by Burkholderia phytofirmans. Frontiers in Microbiology:4:421.

Agyeman, Philipp; Kontny, Udo; Nadal, David; Leibundgut, Kurt; Niggli, Felix; Simon, Arne; Kronenberg, Andreas; Frei, Reno; Escobar, Hugo; Kühne, Thomas; Beck-Popovic, Maja; Bodmer, Nicole; Ammann, Roland A (2014). A prospective multicenter study of microbiologically defined infections in pediatric cancer patients with Fever and neutropenia: swiss pediatric oncology group 2003 fever and neutropenia study. The Pediatric Infectious Disease Journal, 33(9):e219-e225.

Orasch, Christina; Marchetti, Oscar; Garbino, Jorge; Schrenzel, Jacques; Zimmerli, Stefan; Mühlethaler, Konrad; Rossi, Marco; Pfyffer, Gaby; Ruef, Christian; Fehr, Jan; Zbinden, Reinhard; Calandra, Thierry; Bille, Jacques (2014). Candida species distribution and antifungal susceptibility testing according to European Committee on Antimicrobial Susceptibility Testing and new vs. old Clinical and Laboratory Standards Institute clinical breakpoints: a 6-year prospective candidaemia survey from the fungal infection network of Switzerland. Clinical Microbiology and Infection, 20(7):698-705.

Schnell, Barbara; Staubli, Titu; Harris, Nicola L; Rogler, Gerhard; Kopf, Manfred; Loessner, Martin J; Schuppler, Markus (2014). Cell-wall deficient L. monocytogenes L-forms feature abrogated pathogenicity. Frontiers in Cellular and Infection Microbiology:4:60.

Zbinden, Andrea; Quiblier, Chantal; Hernandez, David; Herzog, Kathrin; Bodler, Paul; Senn, Maria M; Gizard, Yann; Schrenzel, Jacques; François, Patrice (2014). Characterization of Streptococcus tigurinus Small-Colony Variants Causing Prosthetic Joint Infection by Comparative Whole-Genome Analyses. Journal of Clinical Microbiology, 52(2):467-474.

Leonard, C A; Borel, N (2014). Chronic chlamydial diseases: From atherosclerosis to urogenital infections. Current Clinical Microbiology Reports, 1(3-4):61-72.

Ross-Gillespie, Adin; Kümmerli, Rolf (2014). Collective decision-making in microbes. Frontiers in Microbiology:5:54.

Münz, Christian (2014). Dendritic cells during Epstein Barr virus infection. Frontiers in Microbiology:5:308.

Boenzli, Eva; Hadorn, Maik; Hartnack, Sonja; Huder, Jon; Hofmann-Lehmann, Regina; Lutz, Hans (2014). Detection of antibodies to the feline leukemia Virus (FeLV) transmembrane protein p15E: an alternative approach for serological FeLV detection based on antibodies to p15E. Journal of Clinical Microbiology, 52(6):2046-2052.

Herzog, Kathrin; Engeler Dusel, J; Hugentobler, Marco; Beutin, L; Sägesser, Grethe; Stephan, Roger; Hächler, Herbert; Nüesch-Inderbinen, Magdalena (2014). Diarrheagenic enteroaggregative Escherichia coli causing urinary tract infection and bacteremia leading to sepsis. Journal of Infection, 42(2):441-444.

Maurer, Florian P; Castelberg, Claudio; Quiblier, Chantal; Böttger, Erik C; Somoskövi, Akos (2014). Erm(41)-dependent inducible resistance to azithromycin and clarithromycin in clinical isolates of Mycobacterium abscessus. Journal of Antimicrobial Chemotherapy, 69(6):1559-1563.

Bloemberg, Guido V; Polsfuss, Silke; Meyer, Vera; Böttger, Erik C; Hombach, Michael (2014). Evaluation of the AID ESBL line probe assay for rapid detection of extended-spectrum β-lactamase (ESBL) and KPC carbapenemase genes in Enterobacteriaceae. Journal of Antimicrobial Chemotherapy, 69(1):85-90.

Ritter, C; Lucke, K; Sirgel, F A; Warren, R W; van Helden, P D; Böttger, E C; Bloemberg, G V (2014). Evaluation of the AID TB Resistance Line Probe Assay for Rapid Detection of Genetic Alterations Associated with Drug Resistance in Mycobacterium tuberculosis Strains. Journal of Clinical Microbiology, 52(3):940-946.

Schulthess, Bettina; Bloemberg, Guido V; Zbinden, Reinhard; Böttger, Erik C; Hombach, Michael (2014). Evaluation of the Bruker MALDI Biotyper for identification of Gram-positive rods - development of a diagnostic algorithm for the clinical laboratory. Journal of Clinical Microbiology, 52(4):1089-1097.

Tschudin-Sutter, S; Frei, R; Stephan, Roger; Hächler, Herbert; Nogarth, D; Widmer, A (2014). Extended-spectrum β-lactamase (ESBL)-producing Enterobacteriaceae: a threat from the kitchen. Infection Control and Hospital Epidemiology, 35(5):581-584.

Lemmenmeier, E; Kohler, P; Bruderer, T; Goldenberger, D; Kleger, G-R; Schlegel, M (2014). First documented outbreak of KPC-2-producing Klebsiella pneumoniae in Switzerland: infection control measures and clinical management. Infection, 42(3):529-534.

Zbinden, Andrea; Aras, Fatma; Zbinden, Reinhard; Mouttet, Forouhar; Schmidlin, Patrick R; Bloemberg, Guido V; Bostanci, Nagihan (2014). Frequent detection of Streptococcus tigurinus in the human oral microbial flora by a specific 16S rRNA gene real-time TaqMan PCR. BMC Microbiology, 14:231.

Luxner, J; Zarfel, G; Johler, S; Feierl, G; Leitner, E; Hoenigl, M; Grisold, A (2014). Genetic characterization of Staphylococcus aureus isolates causing bloodstream infections in Austria. Diagnostic Microbiology and Infectious Disease, 78:153-156.

Fasel, Dominique; Mellmann, Alexander; Cernela, Nicole; Hächler, Herbert; Fruth, Angelika; Khanna, Nina; Egli, Adrian; Beckmann, Christiane; Hirsch, Hans H; Goldenberger, Daniel; Stephan, Roger (2014). Hemolytic uremic syndrome in a 65-Year-old male linked to a very unusual type of stx2e- and eae-harboring O51:H49 shiga toxin-producing Escherichia coli. Journal of Clinical Microbiology, 52(4):1301-1303.

Miro, J M; Agueero, F; Duclos-Vallee, J-C; Mueller, N J; Grossi, P; Moreno, A (2014). Infections in solid organ transplant HIV-infected patients. Clinical Microbiology and Infection, 20(s7):119-130.

Grankvist, Anna; Andersson, Per-Ola; Mattsson, Mattias; Sender, Monica; Vaht, Krista; Höper, Linnea; Sakiniene, Egidija; Trysberg, Estelle; Stenson, Martin; Fehr, Jan; Pekova, Sona; Bogdan, Christian; Bloemberg, Guido; Wennerås, Christine (2014). Infections with the tick-borne bacterium "Candidatus Neoehrlichia mikurensis" mimic noninfectious conditions in patients with B cell malignancies or autoimmune diseases. Clinical Infectious Diseases, 58(12):1716-1722.

Manske, Christian; Hilbi, Hubert (2014). Metabolism of the vacuolar pathogen Legionella and implications for virulence. Frontiers in Cellular and Infection Microbiology:4:125.

Belibasakis, Georgios N; Schmidlin, Patrick R; Sahrmann, Philipp (2014). Molecular microbiological evaluation of subgingival biofilm sampling by paper point and curette. APMIS : Acta Pathologica, Microbiologica, et Immunologica Scandinavica, 122(4):347-352.

Morger, Jennifer; Banjok, Jaroslav; Boyce, Kellyanne; Craig, Philip S; Rogan, Michel T; Lun, Zhao-Rong; Hide, Geoff; Tschirren, Barbara (2014). Naturally occurring Toll-like receptor 11 (TLR11) and Toll-like receptor 12 (TLR12) polymorphisms are not associated with Toxoplasma gondii infection in wild wood mice. Infection, Genetics and Evolution, 26:180-184.

Wang, J; Stephan, Roger; Power, K; Yang, Q; Hächler, Herbert; Fanning, S (2014). Nucleotide sequences of 16 transmissible plasmids identified in nine multi-drug resistant Escherichia coli isolates expressing an ESBL phenotype isolated from food-producing animals and healthy humans. Journal of Antimicrobial Chemotherapy, 69(10):2658-2668.

Schoborg, Robert V; Borel, Nicole (2014). Porcine epidemic diarrhea virus (PEDV) co-infection induced chlamydial persistence/stress does not require viral replication. Frontiers in Cellular and Infection Microbiology:4:20.

Belibasakis, Georgios N; Thurnheer, Thomas; Bostanci, Nagihan (2014). Porphyromonas gingivalis: A heartful oral pathogen? Virulence, 5(4):575-580.

Müller, Andreas; Hächler, Herbert; Stephan, Roger; Lehner, Angelika (2014). Presence of AmpC beta-lactamases, CSA-1, CSA-2, CMA-1, and CMA-2 conferring an unusual resistance phenotype in Cronobacter sakazakii and Cronobacter malonaticus. Microbial Drug Resistance, 20(4):275-280.

Kuster, Stefan P; Rudnick, Wallis; Shigayeva, Altynay; Green, Karen; Baqi, Mahin; Gold, Wayne L; Lovinsky, Reena; Muller, Matthew P; Powis, Jeff E; Rau, Neil; Simor, Andrew E; Walmsley, Sharon L; Low, Donald E; McGeer, Allison (2014). Previous antibiotic exposure and antimicrobial resistance in invasive pneumococcal disease: results from prospective surveillance. Clinical Infectious Diseases, 59(7):944-952.

Mendelson, Marc; Han, Pauline V; Vincent, Peter; von Sonnenburg, Frank; Cramer, Jakob P; Loutan, Louis; Kain, Kevin C; Parola, Philippe; Hagmann, Stefan; Gkrania-Klotsas, Effrossyni; Sotir, Mark; Schlagenhauf, Patricia (2014). Regional Variation in Travel-related Illness acquired in Africa, March 1997-May 2011. Emerging Infectious Diseases, 20(4):532-541.

Zurfluh, Katrin; Jakobi, Gianna; Stephan, Roger; Hächler, Herbert; Nüesch-Inderbinen, Magdalena (2014). Replicon typing of plasmids carrying blaCTX-M-1 in Enterobacteriaceae of animal, environmental and human origin. Frontiers in Microbiology, 5:555.

Somoskovi, Akos; Bloemberg, Guido V (2014). Reply to "Described Diagnostic Inconsistencies Were Observed with an Obsolete Version of the Xpert MTB/RIF Assay and Are Unlikely To Recur in the Current Version of the Assay". Journal of Clinical Microbiology, 52(2):705.

Deggim, Vanessa; Somoskovi, Akos; Bloemberg, Guido (2014). Reply to "Performance of the Xpert MTB/RIF Assay on Nonrespiratory Specimens and Accuracy of This Assay for Detection of Rifampin Resistance in a Low-Prevalence Setting". Journal of Clinical Microbiology, 52(2):707.

Baud, D; Goy, G; Osterheld, M C; Croxatto, A; Borel, N; Vial, Y; Pospischil, A; Greub, G (2014). Role of Waddlia chondrophila Placental Infection in Miscarriage. Emerging Infectious Diseases, 20(4):460-646.

Martin, R; Sospedra, M (2014). Sphingosine-1 phosphate and central nervous system. In: Oldstone, M B A; Rosen, H. Sphingosine-1-Phosphate Signaling in Immunology and Infectious Diseases. Springer: Springer, 149-170.

Andreoni, Federica; Ogawa, Taiji; Ogawa, Mariko; Madon, Jerzy; Uchiyama, Satoshi; Schuepbach, Reto A; Zinkernagel, Annelies S (2014). The IL-8 protease SpyCEP is detrimental for Group A Streptococcus host-cells interaction and biofilm formation. Frontiers in Microbiology:5:339.

Poirel, Laurant; Stephan, Roger; Perreten, Vincent; Nordmann, Patrice (2014). The carbapenemase threat in the animal world: the wrong culprit. Journal of Antimicrobial Chemotherapy, 69(7):2007-2008.

Dudler, Robert (2014). The role of bacterial phytotoxins in inhibiting the eukaryotic proteasome. Trends in Microbiology, 22(1):28-35.

Krause, Sascha; Le Roux, Xavier; Niklaus, Pascal A; van Bodegom, Peter M; Lennon, Jay T; Bertilsson, Stefan; Grossart, Hans-Peter; Philippot, Laurent; Bodelier, Paul L E (2014). Trait-based approaches for understanding microbial biodiversity and ecosystem functioning. Frontiers in Microbiology:5:251.

Belibasakis, G N; Bao, K; Bostanci, N (2014). Transcriptional profiling of human gingival fibroblasts in response to multi-species in vitro subgingival biofilms. Molecular Oral Microbiology, 29(4):174-183.

Drescher, Sara M; von Wyl, Viktor; Yang, Wan-Lin; Böni, Jürg; Yerly, Sabine; Shah, Cyril; Aubert, Vincent; Klimkait, Thomas; Taffé, Patrick; Furrer, Hansjakob; Battegay, Manuel; Ambrosioni, Juan; Cavassini, Matthias; Bernasconi, Enos; Vernazza, Pietro L; Ledergerber, Bruno; Günthard, Huldrych F; Kouyos, Roger D (2014). Treatment-Naive individuals are the major source of transmitted HIV-1 drug resistance in men who have sex with men in the Swiss HIV Cohort Study. Clinical Infectious Diseases, 58(2):285-294.

von Graevenitz, A; Funke, G (2014). Turicella otitidis and Corynebacterium auris: 20 years on. Infection, 42(1):1-4.

Seidl, Kati; Leimer, Nadja; Palheiros Marques, Miguel; Furrer, Alexandra; Senn, Gabriela; Holzmann-Bürgel, Anne; Matt, Ulrich; Zinkernagel, Annelies S (2014). USA300 methicillin-resistant Staphylococcus aureus in Zurich, Switzerland between 2001 and 2013. International Journal of Medical Microbiology : IJMM, 304(8):1118-1122.

Steppacher, Anna; Scheer, Ianina; Relly, Christa; Začek, Bea; Turk, Alexander; Altpeter, Ekkehardt; Berger, Christoph; Nadal, David (2014). Unrecognized pediatric adult-type tuberculosis puts school contacts at risk. The Pediatric Infectious Disease Journal, 33(3):325-328.

Zurfluh, Katrin; Wang, Juan; Klumpp, Jochen; Nüesch-Inderbinen, Magdalena; Fanning, Séamus; Stephan, Roger (2014). Vertical transmission of highly similar blaCTX-M-1-harbouring IncI1 plasmids in Escherichia coli with different MLST types in the poultry production pyramid. Frontiers in Microbiology, 5:519.

Alonso-Sáez, Laura; Zeder, Michael; Harding, Tommy; Pernthaler, Jakob; Lovejoy, Connie; Bertilsson, Stefan; Pedrós-Alió, Carlos (2014). Winter bloom of a rare betaproteobacterium in the Arctic Ocean. Frontiers in Microbiology:5:425.

2013

Low, Nicola; Redmond, Shelagh M; Rutjes, Anne W S; Martínez-González, Nahara A; Egger, Matthias; di Nisio, Marcello; Scott, Pippa (2013). Comparing Haemophilus influenzae type b conjugate vaccine schedules: a systematic review and meta-analysis of vaccine trials. The Pediatric Infectious Disease Journal, 32(11):1245-1256.

Wang, J; Stephan, Roger; Karczmarczyk, M; Yan, Q; Hächler, H; Fanning, S (2013). Molecular characterisation of bla ESBL-harbouring conjugative plasmids identified in multi-drug resistant Escherichia coli isolated from food-producing animals and healthy humans. Frontiers in Microbiology, 4:188.

Lindig, Sandro; Quickert, Stefanie; Vodovotz, Yoram; Wanner, Guido A; Bauer, Michael (2013). Age-independent co-expression of antimicrobial gene clusters in the blood of septic patients. International Journal of Antimicrobial Agents, 42(Sup 1):S2-S7.

Butsch, Raphael; Tapparel, C; Keller, P; Herzog, K; Krause, M; Wunderli, W; Kaiser, L; Bossart, W (2013). Family outbreak of an infection with a recombinant Coxsackie A virus in eastern Switzerland. Infection, 41(1):231-235.

Maurer, Florian P; Maggio, Ewerton M; Roth, Thomas N; Kuster, Stefan P; Bloemberg, Guido V (2013). A well-preserved culprit. Clinical Infectious Diseases, 56(5):747-748.

de Melo Oliveira, Maria G; Abels, Susanne; Zbinden, Reinhard; Bloemberg, Guido V; Zbinden, Andrea (2013). Accurate identification of fastidious Gram-negative rods: integration of both conventional phenotypic methods and 16S rRNA gene analysis. BMC Microbiology, 13:162.

Kovari, Helen; Sabin, Caroline A; Ledergerber, Bruno; Ryom, Lene; Worm, Signe W; Smith, Colette; Phillips, Andrew; Reiss, Peter; Fontas, Eric; Petoumenos, Kathy; De Wit, Stéphane; Morlat, Philippe; Lundgren, Jens D; Weber, Rainer (2013). Antiretroviral drug-related liver mortality among HIV-positive persons in the absence of HBV or HCV co-infection. The Data Collection on Adverse Events of Anti-HIV Drugs (D:A:D) Study. Clinical Infectious Diseases, 56(6):870-879.

Krasemann, Susanne; Mearini, Giulia; Krämer, Elisabeth; Wagenführ, Katja; Schulz-Schaeffer, Walter; Neumann, Melanie; Bodemer, Walter; Kaup, Franz-Josef; Beekes, Michael; Carrier, Lucie; Aguzzi, Adriano; Glatzel, Markus (2013). BSE-associated prion-amyloid cardiomyopathy in primates. Emerging Infectious Diseases, 19(6):985-988.

Achermann, Y; Sahin, F; Schwyzer, H K; Kolling, C; Wüst, J; Vogt, M (2013). Characteristics and outcome of 16 periprosthetic shoulder joint infections. Infection, 41(3):613-620.

Stephan, Roger; Joutsen, S; Hofer, E; Säde, E; Björkroth, J; Ziegler, D; Fredriksson-Ahomaa, M (2013). Characteristics of Yersinia enterocolitica biotype 1A strains isolated from patients and asymptomatic carriers. European Journal of Clinical Microbiology & Infectious Diseases, 32(7):869-875.

Nüesch-Inderbinen, Magdalena; Hofer, Eveline; Hächler, Herbert; Beutin, L; Stephan, Roger (2013). Characteristics of enteroaggregative Escherichia coli isolated from healthy carriers and from patients with diarrhea. Journal of Medical Microbiology, 62:1828-1834.

Hächler, H; Kotsakis, S D; Tzouvelekis, L S; Geser, N; Lehner, Angelika; Miriagou, V; Stephan, Roger (2013). Characterization of CTX-M-117, a Pro174Gln Variant of CTX-M-15 Extended-Spectrum β-Lactamase from a bovine Escherichia coli isolate. International Journal of Antimicrobial Agents, 41(1):94-95.

Maurer, Florian P; Keller, Peter M; Beuret, Christian; Joha, Cornelia; Achermann, Yvonne; Gubler, Jaques; Bircher, Daniela; Karrer, Urs; Fehr, Jan; Zimmerli, Lukas; Bloemberg, Guido V (2013). Close geographic association of human neoehrlichiosis and tick populations carrying Candidatus Neoehrlichia mikurensis in Eastern Switzerland. Journal of clinical microbiology, 51(1):169-176.

Hombach, Michael; Mouttet, Brice; Bloemberg, Guido V (2013). Consequences of revised CLSI and EUCAST guidelines for antibiotic susceptibility patterns of ESBL- and AmpC β-lactamase-producing clinical Enterobacteriaceae isolates. Journal of Antimicrobial Chemotherapy, 68(9):2092-2098.

Rotger, Margalida; Glass, Tracy R; Junier, Thomas; Lundgren, Jens; Neaton, James D; Poloni, Estella S; van 't Wout, Angélique B; Lubomirov, Rubin; Colombo, Sara; Martinez, Raquel; Rauch, Andri; Günthard, Huldrych F; Neuhaus, Jacqueline; Wentworth, Deborah; van Manen, Danielle; Gras, Luuk A; Schuitemaker, Hanneke; Albini, Laura; Torti, Carlo; Jacobson, Lisa P; Li, Xiuhong; Kingsley, Lawrence A; Carli, Federica; Guaraldi, Giovanni; Ford, Emily S; Sereti, Irini; Hadigan, Colleen; Martinez, Esteban; Arnedo, Mireia; Egaña-Gorroño, Lander; Gatell, Jose M; Law, Matthew; Bendall, Courtney; Petoumenos, Kathy; Rockstroh, Jürgen; Wasmuth, Jan-Christian; Kabamba, Kabeya; Delforge, Marc; De Wit, Stephane; Berger, Florian; Mauss, Stefan; de Paz Sierra, Mariana; Losso, Marcelo; Belloso, Waldo H; Leyes, Maria; Campins, Antoni; Mondi, Annalisa; De Luca, Andrea; Bernardino, Ignacio; Barriuso-Iglesias, Mónica; Torrecilla-Rodriguez, Ana; Gonzalez-Garcia, Juan; Arribas, José R; Fanti, Iuri; Gel, Silvia; Puig, Jordi; Negredo, Eugenia; Gutierrez, Mar; Domingo, Pere; Fischer, Julia; Fätkenheuer, Gerd; Alonso-Villaverde, Carlos; Macken, Alan; Woo, James; McGinty, Tara; Mallon, Patrick; Mangili, Alexandra; Skinner, Sally; Wanke, Christine A; Reiss, Peter; Weber, Rainer; Bucher, Heiner C; Fellay, Jacques; Telenti, Amalio; Tarr, Philip E (2013). Contribution of genetic background, traditional risk factors, and HIV-related factors to coronary artery disease events in HIV-positive persons. Clinical Infectious Diseases, 57(1):112-121.

Nüesch-Inderbinen, Magdalena; Abgottspon, Helga; Zurfluh, Katrin; Nüesch, Hans-Jakob; Stephan, Roger; Hächler, Herbert (2013). Cross-sectional study on fecal carriage of Enterobacteriaceae with resistance to extended-spectrum cephalosporins in primary care patients. Microbial Drug Resistance, 19(5):362-369.

Mosimann, V; Neumayr, A; Hatz, C; Blum, J A (2013). Cutaneous leishmaniasis in Switzerland: first experience with species-specific treatment. Infection, 41(6):1177-1182.

Elling, Roland; Henneke, Philipp; Hatz, Christoph; Hufnagel, Markus (2013). Dengue fever in children: where are we now? The Pediatric Infectious Disease Journal, 32(9):1020-1022.

Somoskovi, Akos; Deggim, Vanessa; Ciardo, Diana; Bloemberg, Guido V (2013). Diagnostic implications of inconsistent results obtained with the Xpert MTB/Rif assay in detection of Mycobacterium tuberculosis isolates with an rpoB mutation associated with low-level rifampin resistance. Journal of Clinical Microbiology, 51(9):3127-3129.

Hombach, Michael; Somoskövi, Akos; Hömke, Rico; Ritter, Claudia; Böttger, Erik C (2013). Drug susceptibility distributions in slowly growing non-tuberculous mycobacteria using MGIT 960 TB eXiST. International Journal of Medical Microbiology : IJMM, 303(5):270-276.

Alonso, Cecilia; Piccini, Claudia; Unrein, Fernando; Bertoglio, Florencia; Conde, Daniel; Pernthaler, Jakob (2013). Environmental dynamics as a structuring factor for microbial carbon utilization in a subtropical coastal lagoon. Frontiers in Microbiology:4:14.

Bloemberg, Guido V; Voit, Antje; Ritter, Claudia; Deggim, Vanessa; Böttger, Erik C (2013). Evaluation of Cobas TaqMan MTB for direct detection of the Mycobacterium tuberculosis complex in comparison with Cobas Amplicor MTB. Journal of Clinical Microbiology, 51(7):2112-2117.

Preiswerk, B; Rudiger, A; Fehr, J; Corti, N (2013). Experience with daptomycin daily dosing in ICU patients undergoing continuous renal replacement therapy. Infection, 41(2):553-557.

Achermann, Y; Eigenmann, K; Ledergerber, B; Derksen, L; Rafeiner, P; Clauss, M; Nüesch, R; Zellweger, C; Vogt, M; Zimmerli, W (2013). Factors associated with rifampin resistance in staphylococcal periprosthetic joint infections (PJI): a matched case–control study. Infection, 41(2):431-437.

Sommerstein, R; Ramsay, D; Dubuis, O; Waser, S; Aebersold, F; Vogt, M (2013). Fatal Neisseria sicca endocarditis. Infection, 41(3):747-749.

Abela, Lucia; Toelle, Sandra P; Hackenberg, Annette; Scheer, Ianina; Güngör, Tayfun; Plecko, Barbara (2013). Fatal outcome of rhino-orbital-cerebral mucormycosis due to bilateral internal carotid occlusion in a child after hematopoietic stem cell transplantation. The Pediatric infectious disease journal, 32(10):1149-1150.

Allegranzi, B; Sax, H; Pittet, D (2013). Hand hygiene and healthcare system change within multi-modal promotion: a narrative review. Journal of Hospital Infection, 83(S1):S3-S10.

Uçkay, Ilker; Sax, Hugo; Gayet-Ageron, Angèle; Ruef, Christian; Mühlemann, Kathrin; Troillet, Nicolas; Petignat, Christiane; Bernasconi, Enos; Balmelli, Carlo; Widmer, Andreas; Boubaker, Karim; Pittet, Didier (2013). High proportion of healthcare-associated urinary tract infection in the absence of prior exposure to urinary catheter: a cross-sectional study. Antimicrobial Resistance and Infection Control, 2:5.

Machado, Diana; Perdigão, João; Ramos, Jorge; Couto, Isabel; Portugal, Isabel; Ritter, Claudia; Boettger, Erik C; Viveiros, Miguel (2013). High-level resistance to isoniazid and ethionamide in multidrug-resistant Mycobacterium tuberculosis of the Lisboa family is associated with inhA double mutations. Journal of Antimicrobial Chemotherapy, 68(8):1728-1732.

Glasner, C; Sabat, A J; Chlebowicz, M A; Butaye, P; Fetsch, A; Guerra, B; Huber, H; Stephan, Roger; Torres, C; Vanderhaeghen, W; Voss, A; Wulff, M; van Dijl, J M (2013). High-resolution typing by MLVF unveils extensive heterogeneity of European livestock-associated methicillin-resistant Staphylococcus aureus isolates with the sequence type 398. International Journal of Medical Microbiology : IJMM, 303(3):124-127.

Usubalieva, Jumagul; Minbaeva, Gulnara; Ziadinov, Iskender; Deplazes, Peter; Torgerson, Paul R (2013). Human Alveolar Echinococcosis in Kyrgyzstan. Emerging Infectious Diseases, 19(7):1095-1097.

Schulthess, Bettina; Brodner, Katharina; Bloemberg, Guido V; Zbinden, Reinhard; Böttger, Erik C; Hombach, Michael (2013). Identification of Gram-positive cocci by use of matrix-assisted laser desorption ionization-time of flight mass spectrometry: comparison of different preparation methods and implementation of a practical algorithm for routine diagnostics. Journal of Clinical Microbiology, 51(6):1834-1840.

Schwizer, S; Tasara, T; Zurfluh, K; Stephan, Roger; Lehner, Angelika (2013). Identification of genes involved in serum tolerance in the clinical strain Cronobacter sakazakii ES5. BMC Microbiology, 13:38.

Schwizer, S. Identification of genes involved in serum tolerance in the clinical strain Cronobacter sakazakii ES5. 2013, University of Zurich, Vetsuisse Faculty.

Martin, Oliver Y; Puniamoorthy, Nalini; Gubler, Andrea; Wimmer, Corinne; Bernasconi, Marco V (2013). Infections with Wolbachia, Spiroplasma, and Rickettsia in the Dolichopodidae and other Empidoidea. Infection, Genetics and Evolution, 13:317-330.

Hombach, Michael; Wolfensberger, Aline; Kuster, Stefan P; Böttger, Erik C (2013). Influence of clinical breakpoint changes from CLSI 2009 to EUCAST 2011 antimicrobial susceptibility testing guidelines on multidrug resistance rates of Gram-negative rods. Journal of Clinical Microbiology, 51(7):2385-2587.

Deggim, Vanessa; Somoskovi, Akos; Voit, Antje; Böttger, Erik C; Bloemberg, Guido V (2013). Integrating the Xpert MTB/RIF assay into a diagnostic workflow for rapid detection of Mycobacterium tuberculosis in a low-prevalence area. Journal of Clinical Microbiology, 51(7):2396-2399.

Zurfluh, Katrin; Nüesch-Inderbinen, Magdalena; Stephan, Roger; Hächler, Herbert (2013). Letter to the editor: Higher generation cephalosporin-resistant Escherichia coli in feral birds in Switzerland. International Journal of Antimicrobial Agents, 41(3):296-297.

Brülle, Juliane K; Tschumi, Andreas; Sander, Peter (2013). Lipoproteins of slow-growing Mycobacteria carry three fatty acids and are N-acylated by apolipoprotein N-acyltransferase BCG_2070c. BMC Microbiology, 13:223.

Senn, L; Basset, P; Greub, G; Prod'hom, G; Frei, R; Zbinden, R; Gaia, V; Balmelli, C; Pfyffer, G E; Mühlemann, K; Zanetti, G; Blanc, D S (2013). Molecular epidemiology of methicillin-resistant Staphylococcus aureus in Switzerland: sampling only invasive isolates does not allow a representative description of the local diversity of clones. Clinical Microbiology and Infection, 19(7):E288-E290.

Stritt, A; Kottanattu, L; Bucher, B; Tschumi, S; Steinmann, M; von Steiger, N; Stephan, Roger; Hächler, H; Simonetti, G D (2013). Neonatal hemolytic uremic syndrome after mother-to-child transmission of a low virulent stx2b harbouring Shiga-toxin producing Escherichia coli. Clinical Infectious Diseases, 56(1):114-116.

Nüesch-Inderbinen, Magdalena; Zurfluh, Katrin; Hächler, Herbert; Stephan, Roger (2013). No evidence so far for the dissemination of carbapenemase-producing Enterobactericeae in the community in Switzerland. Antimicrobial Resistance and Infection Control, 2:23.

Achermann, Yvonne; Rössle, Matthias; Hoffmann, Matthias; Deggim, Vanessa; Kuster, Stefan; Zimmermann, Dieter R; Bloemberg, Guido; Hombach, Michael; Hasse, Barbara (2013). Prosthetic valve endocarditis and bloodstream infection due to Mycobacterium chimaera. Journal of Clinical Microbiology, 51(6):1769-1773.

Schaffner, Francis; Medlock, J M; Van Bortel, W (2013). Public health significance of invasive mosquitoes in Europe. Clinical Microbiology and Infection, 19(8):685-692.

Sassi, Monica; Mueller, Nicolas J; Yazaki, Hirohisa; Oka, Shinichi; Gianella, Sara; Kovacs, Joseph A (2013). Reply to Hauser et al. Clinical Infectious Diseases, 56(1):166-167.

Bosshard, Philipp P; Graf, Nicole; Knaute, Damaris Fröhlich; Kündig, Thomas; Lautenschlager, Stephan; Weber, Rainer (2013). Response of treponema pallidum particle agglutination test titers to treatment of syphilis. Clinical Infectious Diseases, 56(3):463-464.

Kuster, Stefan P; Coleman, Brenda L; Raboud, Janet; McNeil, Shelly; De Serres, Gaston; Gubbay, Jonathan; Hatchette, Todd; Katz, Kevin C; Loeb, Mark; Low, Donald; Mazzulli, Tony; Simor, Andrew; McGeer, Allison J (2013). Risk factors for influenza among health care workers during 2009 pandemic, Toronto, Ontario, Canada. Emerging Infectious Diseases, 19(4):606-615.

Hombach, Michael; Zbinden, Reinhard; Böttger, Erik C (2013). Standardisation of disk diffusion results for antibiotic susceptibility testing using the sirscan automated zone reader. BMC Microbiology, 13:225.

Veloso, Tiago Rafael; Zbinden, Andrea; Andreoni, Federica; Giddey, Marlyse; Vouillamoz, Jacques; Moreillon, Philippe; Zinkernagel, Annelies Sophie; Entenza, José Manuel (2013). Streptococcus tigurinus is highly virulent in a rat model of experimental endocarditis. International Journal of Medical Microbiology : IJMM, 303(8):498-504.

Seidl, Kati; Zinkernagel, Annelies S (2013). The MTT assay is a rapid and reliable quantitative method to assess Staphylococcus aureus induced endothelial cell damage. Journal of Microbiological Methods, 92(3):307-309.

Versporten, Ann; Sharland, Mike; Bielicki, Julia; Drapier, Nico; Vankerckhoven, Vanessa; Goossens, Herman; Berger, Christoph (2013). The antibiotic resistance and prescribing in European Children Project: A neonatal and pediatric antimicrobial web-based point prevalence survey in 73 hospitals worldwide. The Pediatric infectious disease journal, 32(6):e242-e253.

Hombach, Michael; Böttger, Erik C; Roos, Malgorzata (2013). The critical influence of the intermediate category on interpretation errors in revised EUCAST and CLSI antimicrobial susceptibility testing guidelines. Clinical Microbiology and Infection, 19(2):E59-71.

Mocroft, A; Furrer, H J; Miro, J M; Reiss, P; Mussini, C; Kirk, O; Abgrall, S; Ayayi, S; Bartmeyer, B; Braun, D; Castagna, A; d'Arminio Monforte, A; Gazzard, B; Gutierrez, F; Hurtado, I; Jansen, K; Meyer, L; Muñoz, P; Obel, N; Soler-Palacin, P; Papadopoulos, A; Raffi, F; Ramos, J T; Rockstroh, J K; Salmon, D; Torti, C; Warszawski, J; de Wit, S; Zangerle, R; Fabre-Colin, C; Kjaer, J; Chene, G; Grarup, J; Lundgren, J D (2013). The incidence of AIDS-defining illnesses at a current CD4 count ≥ 200 cells/μL in the post-combination antiretroviral therapy era. Clinical Infectious Diseases, 57(7):1038-1047.

Leder, Karin; Torresi, Joseph; Brownstein, John S; Wilson, Mary E; Keystone, Jay S; Barnett, Elizabeth; Schwartz, Eli; Schlagenhauf, Patricia; Wilder-Smith, Annelies; Castelli, Francesco; von Sonnenburg, Frank; Freedman, David O; Cheng, Allen C (2013). Travel-associated illness trends and clusters, 2000-2010. Emerging Infectious Diseases, 19(7):1049-1073.

Suppiger, Angela; Schmid, Nadine; Aguilar, Claudio; Pessi, Gabriella; Eberl, Leo (2013). Two quorum sensing systems control biofilm formation and virulence in members of the Burkholderia cepacia complex. Virulence, 4(5):400-409.

Bosshard, Philipp P (2013). Usefulness of IgM-specific enzyme immunoassays for serodiagnosis of syphilis: comparative evaluation of three different assays. Journal of Infection, 67(1):35-42.

Mercer, Jason; Greber, Urs F (2013). Virus interactions with endocytic pathways in macrophages and dendritic cells. Trends in Microbiology, 21(8):380-388.

2012

Meyer Sauteur, Patrick M; Huber, Benedikt M; Goetschel, Philippe (2012). Neuroinvasive Mycoplasma pneumoniae infection without intrathecal antibody response. The Pediatric Infectious Disease Journal, 31(11):1199-1200.

Schirrmeister, Bettina E; Dalquen, Daniel A; Anisimova, Maria; Bagheri, Homayoun C (2012). Gene copy number variation and its significance in cyanobacterial phylogeny. BMC Microbiology, 12:177.

Johler, Sophia; Moser, M; Engl, C; Tasara, T; Corti, S; Chen, J; Stephan, Roger (2012). A coagulase and α-glucosidase negative variant of Staphylococcus aureus - a challenge for routine microbiological diagnostics. Journal of Clinical Microbiology, 50(5):1827-1828.

Greiner, M; Cusini, A; Ruesch, M; Schiesser, M; Ledergerber, B; Fehr, T; Mueller, N J (2012). A stringent preemptive protocol reduces cytomegalovirus disease in the first 6 months after kidney transplantation. Infection, 40(6):669-675.

Maurer, Florian P; Rüegger, Vera; Ritter, Claudia; Bloemberg, Guido V; Böttger, Erik C (2012). Acquisition of clarithromycin resistance mutations in the 23S rRNA gene of Mycobacterium abscessus in the presence of inducible erm(41). Journal of Antimicrobial Chemotherapy, 67(11):2606-2611.

Maurer, Florian. Acquisition of clarithromycin resistance mutations in the 23S rRNA gene of Mycobacterium abscessus in the presence of inducible erm(41). 2012, University of Zurich, Faculty of Medicine.

Ammann, Thomas W; Gmür, Rudolf; Thurnheer, Thomas (2012). Advancement of the 10-species subgingival Zurich Biofilm model by examining different nutritional conditions and defining the structure of the in vitro biofilms. BMC Microbiology, 12:227.

Lucke, Katja; Hombach, Michael; Friedel, Ute; Ritter, Claudia; Böttger, Erik C (2012). Automated quantitative drug susceptibility testing of non-tuberculous mycobacteria using MGIT 960/EpiCenter TB eXiST. Journal of Antimicrobial Chemotherapy, 67(1):154-158.

Hatz, Christoph (2012). Boosting Japanese encephalitis vaccine. Clinical Infectious Diseases, 55(6):835-836.

Beerenwinkel, Niko; Günthard, Huldrych F; Roth, Volker; Metzner, Karin J (2012). Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data. Frontiers in Microbiology, 3:329.

Colombo, Carlo; Senn, Gabriela; Bürgel, Anne; Ruef, Christian (2012). Clearance of an epidemic clone of methicillin-resistant Staphylococcus aureus in a drug-use network: A follow-up study in Switzerland. Scandinavian Journal of Infectious Diseases, 44(9):650-655.

Polsfuss, Silke; Bloemberg, Guido V; Giger, Jacqueline; Meyer, Vera; Hombach, Michael (2012). Comparison of European Committee on Antimicrobial Susceptibility Testing (EUCAST) and CLSI screening parameters for the detection of extended-spectrum β-lactamase production in clinical Enterobacteriaceae isolates. Journal of Antimicrobial Chemotherapy, 67(1):159-166.

Wattinger, L; Stephan, Roger; Layer, F; Johler, Sophia (2012). Comparison of Staphylococcus aureus isolates associated with food intoxication with isolates from human nasal carriers and human infections. European Journal of Clinical Microbiology & Infectious Diseases, 31(4):455-464.

Karczmarczyk, M; Stephan, Roger; Hächler, H; Fanning, S (2012). Complete nucleotide sequence of pVQS1 containing a quinolone resistance determinant from Salmonella enterica serovar Virchow associated with foreign travel. Journal of Antimicrobial Chemotherapy, 67(8):1861-1864.

Vollbrecht, Thomas; Eberle, Josef; Roider, Julia; Bühler, Silja; Stirner, Renate; Henrich, Nadja; Seybold, Ulrich; Bogner, Johannes R; Draenert, Rika (2012). Control of M184V HIV-1 mutants by CD8 T-cell responses. Medical Microbiology and Immunology, 201(2):201-211.

Crisinel, Pierre Alex; Posfay-Barbe, Klara Maria; Aebi, Christoph; Cheseaux, Jean-Jacques; Kahlert, Christian; Rudin, Christoph; Nadal, David; Siegrist, Claire-Anne (2012). Determinants of hepatitis A vaccine immunity in a cohort of human immunodeficiency virus-infected children living in Switzerland. Clinical and Vaccine Immunology, 19(11):1751-7.

Bostanci, Nagihan; Belibasakis, Georgios N (2012). Doxycycline inhibits TREM-1 induction by Porphyromonas gingivalis. FEMS Immunology and Medical Microbiology, 66(1):37-44.

Knapp, J; Staebler, S; Bart, J M; Stien, A; Yoccoz, N G; Drögemüller, C; Gottstein, B; Deplazes, P (2012). Echinococcus multilocularis in Svalbard, Norway: Microsatellite genotyping to investigate the origin of a highly focal contamination. Infection, Genetics and Evolution, 12(6):1270-1274.

Hombach, Michael; Bloemberg, Guido V; Böttger, Erik C (2012). Effects of clinical breakpoint changes in CLSI guidelines 2010/2011 and EUCAST guidelines 2011 on antibiotic susceptibility test reporting of Gram-negative bacilli. Journal of Antimicrobial Chemotherapy, 67(3):622-632.

Berg, Ronan M G; Taudorf, Sarah; Bailey, Damian M; Lundby, Carsten; Larsen, Fin S; Pedersen, Bente K; Møller, Kirsten (2012). Effects of lipopolysaccharide infusion on arterial levels and transcerebral exchange kinetics of glutamate and glycine in healthy humans. APMIS : acta pathologica, microbiologica, et immunologica Scandinavica, 120(9):761-766.

Birrenbach, Tanja; Bertschy, Sonja; Aebersold, Franziska; Mueller, Nicolas J; Achermann, Yvonne; Muehlethaler, Konrad; Zimmerli, Stefan (2012). Emergence of Blastoschizomyces capitatus yeast infections, Central Europe. Emerging Infectious Diseases, 18(1):98-101.

Polsfuss, Silke; Bloemberg, Guido V; Giger, Jacqueline; Meyer, Vera; Böttger, Erik C; Hombach, Michael (2012). Evaluation of a diagnostic flow chart for detection and confirmation of extended spectrum β-lactamases (ESBL) in Enterobacteriaceae. Clinical Microbiology and Infection, 18(12):1194-1204.

Laheij, A M G A; Kistler, J O; Belibasakis, G N; Välimaa, H; de Soet, J J (2012). Healthcare-associated viral and bacterial infections in dentistry. Journal of Oral Microbiology, 4:17659.

Oertli, Mathias; Müller, Anne (2012). Helicobacter pylori targets dendritic cells to induce immune tolerance, promote persistence and confer protection against allergic asthma. Gut Microbes, 3(6):566-571.

Wandeler, Gilles; Gsponer, Thomas; Bregenzer, Andrea; Günthard, Huldrych F; Clerc, Olivier; Calmy, Alexandra; Stöckle, Marcel; Bernasconi, Enos; Furrer, Hansjakob; Rauch, Andri (2012). Hepatitis C virus infections in the Swiss HIV Cohort Study: a rapidly evolving epidemic. Clinical Infectious Diseases, 55(10):1408-1416.

Blum, J A; Neumayr, A L; Hatz, C F (2012). Human African trypanosomiasis in endemic populations and travellers. European Journal of Clinical Microbiology and Infectious Diseases, 31(6):905-913.

Daum, Janine M; Davis, Leyla R; Bigler, Laurent; Woodhams, Doug C (2012). Hybrid advantage in skin peptide immune defenses of water frogs (Pelophylax esculentus) at risk from emerging pathogens. Infection, Genetics and Evolution, 12(8):1854-1864.

Lehner, Angelika; Fricker-Feer, C; Stephan, Roger (2012). Identification of the recently described Cronobacter condimenti by a rpoB based PCR system. Journal of Medical Microbiology, 61(Pt 7):1034-1035.

Coleman, B L; Kuster, S P; Gubbay, J; Scheifele, D; Li, Y; Low, D; Crowcroft, N; Mazzulli, T; Shi, L; Halperin, S A; Law, B; McGeer, A (2012). Immunogenicity of a half-dose of adjuvanted 2009 pandemic H1N1 influenza vaccine in adults: a prospective cohort study. European Journal of Clinical Microbiology and Infectious Diseases, 31(4):591-597.

von Wyl, V; Yerly, S; Böni, J; Shah, C; Cellerai, C; Klimkait, T; Battegay, M; Bernasconi, E; Cavassini, M; Furrer, H; Hirschel, B; Vernazza, P L; Ledergerber, B; Günthard, H F (2012). Incidence of HIV-1 drug resistance among antiretroviral treatment-naive individuals starting modern therapy combinations. Clinical Infectious Diseases, 54(1):131-140.

Bansal, V; Altermatt, S; Nadal, D; Berger, C (2012). Lack of benefit of preoperative antimicrobial prophylaxis in children with acute appendicitis: a prospective cohort study. Infection, 40(6):635-641.

Neumayr, Andreas; Gabriel, Martin; Fritz, Jasmin; Günther, Stephan; Hatz, Christoph; Schmidt-Chanasit, Jonas; Blum, Johannes (2012). Mayaro virus infection in traveler returning from Amazon Basin, northern Peru. Emerging Infectious Diseases, 18(4):695-696.

Hugelshofer, M; Achermann, Y; Kovari, H; Dent, W; Hombach, M; Bloemberg, G (2012). Meningoencephalitis with Subdural Empyema Caused by Toxigenic Clostridium perfringens Type A. Journal of Clinical Microbiology, 50(10):3409-3411.

Gasser, R B; Jabbar, A; Mohandas, N; Schnyder, M; Deplazes, P; Littlewood, D T J; Jex, A R (2012). Mitochondrial genome of Angiostrongylus vasorum: Comparison with congeners and implications for studying the population genetics and epidemiology of this parasite. Infection, Genetics and Evolution, 12(8):1884-1891.

Lederer, H; Achermann, Y; Tinguely, M; Stenner, F; Fehr, J (2012). Multicentric Castleman's disease as a cause for unclear febrile episodes in a 55-year-old HIV-infected man. Infection, 40(2):203-205.

Nemeth, J; Ledergerber, B; Preiswerk, B; Nobile, A; Karrer, S; Ruef, C; Kuster, S P (2012). Multidrug-resistant bacteria in travellers hospitalized abroad: prevalence, characteristics, and influence on clinical outcome. Journal of Hospital Infection, 82(4):254-259.

Sirgel, F A; Tait, M; Warren, R M; Streicher, E M; Böttger, E C; Van Helden, P D; Gey Van Pittius, N C; Coetzee, G; Hoosain, E Y; Chabula-Nxiweni, M; Hayes, C; Victor, T C; Trollip, A (2012). Mutations in the rrs A1401G gene and phenotypic resistance to amikacin and capreomycin in mycobacterium tuberculosis. Microbial Drug Resistance, 18(2):193-197.

Fenner, L; Gagneux, S; Helbling, P; Battegay, M; Rieder, H L; Pfyffer, G E; Zwahlen, M; Furrer, H; Siegrist, H H; Fehr, J; Dolina, M; Calmy, A; Stucki, D; Jaton, K; Janssens, J P; Stalder, J M; Bodmer, T; Ninet, B; Böttger, E C; Egger, M (2012). Mycobacterium tuberculosis transmission in a country with low tuberculosis incidence: Role of immigration and HIV infection. Journal of Clinical Microbiology, 50(2):388-395.

Knopp, Stefanie; Steinmann, Peter; Hatz, Christoph; Keiser, Jennifer; Utzinger, Jürg (2012). Nematode infections: filariases. Infectious Disease Clinics of North America, 26(2):359-381.

Schulthess, Bettina; Bloes, Dominik A; Berger-Bächi, Brigitte (2012). Opposing roles of σB and σB-controlled SpoVG in the global regulation of esxA in Staphylococcus aureus. BMC Microbiology, 12:17.

Sassi, Monica; Ripamonti, Chiara; Mueller, Nicolas J; Yazaki, Hirohisa; Kutty, Geetha; Ma, Liang; Huber, Charles; Gogineni, Emile; Oka, Shinichi; Goto, Norihiko; Fehr, Thomas; Gianella, Sara; Konrad, Regina; Sing, Andreas; Kovacs, Joseph A (2012). Outbreaks of Pneumocystis pneumonia in 2 renal transplant centers linked to a single strain of Pneumocystis: implications for transmission and virulence. Clinical Infectious Diseases, 54(10):1437-1444.

Trück, Johannes; Lazarus, Rajeka; Jonsdottir, Ingileif; Klugman, Keith P; Pollard, Andrew J (2012). Pneumococcal polysaccharide vaccine efficacy and routine use of conjugate vaccines in infants: there is no need for a vaccine program in older adults at present. Clinical Infectious Diseases, 55(11):1577-9; author reply 1579.

Kasbari, M; Ravel, C; Harold, N; Pesson, B; Schaffner, Francis; Depaquit, J (2012). Possibility of Leishmaniasis transmission in Jura, France. Emerging Infectious Diseases, 18(6):1030.

Schlagenhauf, Patricia; Blumentals, William A; Suter, Pia; Regep, Loredana; Vital-Durand, Gabriel; Schaerer, Martin T; Boutros, Margarita Suarez; Rhein, Hans-Georg; Adamcova, Miriam (2012). Pregnancy and fetal outcomes after exposure to mefloquine in the pre- and periconception period and during pregnancy. Clinical Infectious Diseases, 54(11):e124-e131.

Hatz, Christoph; Kuenzli, Esther; Funk, Maia (2012). Rabies: relevance, prevention, and management in travel medicine. Infectious Disease Clinics of North America, 26(3):739-753.

Corti, M A M; Bloemberg, G V; Borelli, S; Kutzner, H; Eich, G; Hoelzle, L; Lautenschlager, S (2012). Rare human skin infection with Corynebacterium ulcerans: transmission by a domestic cat. Infection, 40(5):575-578.

Schlagenhauf, Patricia; Blumentals, William A; Suter, Pia; Regep, Loredana; Vital-Durand, Gabriel; Schaerer, Martin T; Boutros, Margarita Suarez; Rhein, Hans-Georg; Adamcova, Miriam (2012). Reply to nevin. Clinical Infectious Diseases, 55(8):1168-1169.

Steinbach, William J; Roilides, Emmanuel; Berman, David; Hoffman, Jill A; Groll, Andreas H; Bin-Hussain, Ibrahim; Palazzi, Debra L; Castagnola, Elio; Halasa, Natasha; Velegraki, Aristea; Dvorak, Christopher C; Charkabarti, Arunaloke; Sung, Lillian; Danziger-Isakov, Lara; Lachenauer, Catherine; Arrieta, Antonio; Knapp, Katherine; Abzug, Mark J; Ziebold, Christine; Lehrnbecher, Thomas; Klingspor, Lena; Warris, Adilia; Leckerman, Kateri; Martling, Teresa; Walsh, Thomas J; Benjamin, Daniel K; Zaoutis, Theoklis E; Berger, Christoph (2012). Results from a prospective, international, epidemiologic study of invasive candidiasis in children and neonates. The Pediatric infectious disease journal, 31(12):1252-1257.

Schweiger, A; Grimm, F; Tanner, I; Müllhaupt, B; Bertogg, K; Müller, N; Deplazes, P (2012). Serological diagnosis of echinococcosis: the diagnostic potential of native antigens. Infection, 40(2):139-152.

Knaute, Damaris Fröhlich; Graf, Nicole; Lautenschlager, Stephan; Weber, Rainer; Bosshard, Philipp P (2012). Serological response to treatment of syphilis according to disease stage and HIV status. Clinical Infectious Diseases, 55(12):1615-1622.

Sayasone, Somphou; Rasphone, Oroth; Vanmany, Monely; Vounatsou, Penelope; Utzinger, Jürg; Tanner, Marcel; Akkhavong, Kongsap; Hatz, Christoph; Odermatt, Peter (2012). Severe morbidity due to Opisthorchis viverrini and Schistosoma mekongi infection in Lao People's Democratic Republic. Clinical Infectious Diseases, 55(6):e54-e57.

Schlagenhauf, Patricia; Petersen, Eskild (2012). Standby emergency treatment of malaria in travelers: experience to date and new developments. Expert Review of Anti-infective Therapy, 10(5):537-546.

Zbinden, Andrea; Mueller, Nicolas J; Tarr, Philip E; Eich, Gerhard; Schulthess, Bettina; Bahlmann, Anna S; Keller, Peter M; Bloemberg, Guido V (2012). Streptococcus tigurinus, a novel member of the Streptococcus mitis group, causes invasive infections. Journal of Clinical Microbiology, 50(9):2969-2973.

Arnold, Isabelle C; Hitzler, Iris; Müller, Anne (2012). The Immunomodulatory Properties of Helicobacter pylori Confer Protection Against Allergic and Chronic Inflammatory Disorders. Frontiers in Cellular and Infection Microbiology:2:10.

Baumgartner, Angelica Anna; Thurnheer, Thomas; Lüthi-Schaller, Helga; Gmür, Rudolf; Belibasakis, Georgios N (2012). The phylum Synergistetes in gingivitis and necrotizing ulcerative gingivitis. Journal of Medical Microbiology, 61(Pt 11):1600-1609.

Odolini, S; Parola, P; et al; Schlagenhauf, Patricia; López‐Vélez, Rogelio (2012). Travel-related imported infections in Europe, EuroTravNet 2009. Clinical Microbiology and Infection, 18(5):468-474.

Fredriksson-Ahomaa, M; Cernela, N; Hächler, H; Stephan, Roger (2012). Yersinia enterocolitica strains associated with human infections in Switzerland 2001-2010. European Journal of Clinical Microbiology & Infectious Diseases, 31(7):1543-1550.

Sirgel, Frederick A; Warren, Robin M; Streicher, Elizabeth M; Victor, Thomas C; van Helden, Paul D; Böttger, Erik C (2012). gyrA mutations and phenotypic susceptibility levels to ofloxacin and moxifloxacin in clinical isolates of Mycobacterium tuberculosis. Journal of Antimicrobial Chemotherapy, 67(5):1088-1093.

2011

Damond, F; Benard, A; Balotta, C; Böni, J; Cotten, M; Duque, V; Ferns, B; Garson, J; Gomes, P; Gonçalves, F; Gottlieb, G; Kupfer, B; Ruelle, J; Rodes, B; Soriano, V; Wainberg, M; Taieb, A; Matheron, S; Chene, G; Brun-Vezinet, F (2011). An international collaboration to standardize HIV-2 viral load assays: results from the 2009 ACHI(E)V(2E) quality control study. Journal of Clinical Microbiology, 49(10):3491-3497.

Baud, D; Goy, G; Jaton, K; Osterheld, M C; Blumer, S; Borel, N; Vial, Y; Hohlfeld, P; Pospischil, A; Greub, G (2011). Role of Chlamydia trachomatis in miscarriage. Emerging Infectious Diseases, 17(9):1630-1635.

Kocher, C; Weber, R; Friedl, A (2011). A case study of female genital tuberculosis in a Western European setting. Infection, 39(1):59-63.

Polsfuss, S; Bloemberg, G V; Giger, J; Meyer, V; Böttger, E C; Hombach, M (2011). A practical approach for reliable detection of AmpC Beta-Lactamase producing Enterobacteriaceae. Journal of Clinical Microbiology, 49(8):2798-2803.

von Graevenitz, A (2011). Actinomyces neuii: Review of an unusual infectious agent. Infection, 39(2):97-100.

Marzolini, C; Back, D; Weber, R; Furrer, H; Cavassini, M; Calmy, A; Vernazza, P; Bernasconi, E; Khoo, S; Battegay, M; Elzi, L (2011). Ageing with HIV: medication use and risk for potential drug-drug interactions. Journal of Antimicrobial Chemotherapy, 66(9):2107-2111.

Kouyos, R D; von Wyl, V; Yerly, S; Böni, J; Rieder, P; Joos, B; Taffé, P; Shah, C; Bürgisser, P; Klimkait, T; Weber, R; Hirschel, B; Cavassini, M; Rauch, A; Battegay, M; Vernazza, P L; Bernasconi, E; Ledergerber, B; Bonhoeffer, S; Günthard, H F (2011). Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection. Clinical Infectious Diseases, 52(4):532-539.

Ruef, C (2011). Antibiotic resistance really starts to hurt. Infection, 39(6):499-500.

Ruef, C (2011). Borrelia burgdorferi bacteremia. Infection, 39(1):1.

Rampini, S K; Bloemberg, G V; Keller, P M; Büchler, A C; Dollenmaier, G; Speck, R F; Böttger, E C (2011). Broad-range 16S rRNA gene polymerase chain reaction for diagnosis of culture-negative bacterial infections. Clinical Infectious Diseases, 53(12):1245-1251.

Achermann, Y; Vogt, M; Spormann, C; Kolling, C; Remschmidt, C; Wüst, J; Simmen, B; Trampuz, A (2011). Characteristics and outcome of 27 elbow periprosthetic joint infection: Results from a 14-year cohort study of 358 elbow prostheses. Clinical Microbiology and Infection, 17(3):432-438.

Rieder, P; Joos, B; Scherrer, A U; Kuster, H; Braun, D; Grube, C; Niederöst, B; Leemann, C; Gianella, S; Metzner, K J; Böni, J; Weber, R; Günthard, H F (2011). Characterization of human immunodeficiency virus type 1 (HIV-1) diversity and tropism in 145 patients with primary HIV-1 infection. Clinical Infectious Diseases, 53(12):1271-1279.

Ruef, C (2011). Community-onset bacteremia may be an ominous sign. Infection, 39(5):397.

Quiblier, C; Zinkernagel, A S; Schuepbach, R A; Berger-Bächi, B; Senn, M M (2011). Contribution of SecDF to Staphylococcus aureus resistance and expression of virulence factors. BMC Microbiology, 11:72.

Wyen, C; Hendra, H; Siccardi, M; Platten, M; Jaeger, H; Harrer, T; Esser, S; Bogner, J R; Brockmeyer, N H; Bieniek, B; Rockstroh, J; Hoffmann, C; Stoehr, A; Michalik, C; Dlugay, V; Jetter, A; Knechten, H; Klinker, H; Skaletz-Rorowski, A; Fätkenheuer, G; Egan, D; Back, D J; Owen, A (2011). Cytochrome P450 2B6 (CYP2B6) and constitutive androstane receptor (CAR) polymorphisms are associated with early discontinuation of efavirenz-containing regimens. Journal of Antimicrobial Chemotherapy, 66(9):2092-2098.

Peter-Getzlaff, S; Polsfuss, S; Poledica, M; Hombach, M; Giger, J; Böttger, E C; Zbinden, R; Bloemberg, G V (2011). Detection of AmpC beta-lactamase in Escherichia coli: comparison of three phenotypic confirmation assays and genetic analysis. Journal of Clinical Microbiology, 49(8):2924-2932.

Brandes Ammann, A; Kölle, L; Brandl, H (2011). Detection of bacterial endospores in soil by terbium fluorescence. International Journal of Microbiology, 2011:435281.

Wagner, C; Preiswerk, B; Weber, R (2011). Disseminated Kaposi sarcoma in newly diagnosed HIV. Infection, 39(1):91.

Scharf, W; Schauer, S; Freyburger, F; Petrovec, M; Schaarschmidt-Kiener, D; Liebisch, G; Runge, M; Ganter, M T; Kehl, A; Dumler, J S; García-Pérez, A L; Jensen, J; Fingerle, V; Meli, M L; Ensser, A; Stuen, S; von Loewenich, F D (2011). Distinct host species correlate with Anaplasma phagocytophilum ankA gene clusters. Journal of Clinical Microbiology, 49(3):790-796.

Li, J V; Reshat, R; Wu, Q; Ashrafian, H; Bueter, M; le Roux, C W; Darzi, A; Athanasiou, T; Marchesi, J R; Nicholson, J K; Holmes, E; Gooderham, N J (2011). Experimental bariatric surgery in rats generates a cytotoxic chemical environment in the gut contents. Frontiers in Microbiology, 2:183.

Meier, S; Weber, R; Zbinden, R; Ruef, C; Hasse, B (2011). Extended-spectrum β-lactamase-producing gram-negative pathogens in community-acquired urinary tract infections: an increasing challenge for antimicrobial therapy. Infection, 39(4):333-340.

Belibasakis, G N; Emingil, G; Saygan, B; Turkoglu, O; Atilla, G; Bostanci, N (2011). Gene expression of transcription factor NFATc1 in periodontal diseases. APMIS: Acta Pathologica, Microbiologica et Immunologica Scandinavica, 119(3):167-172.

Sendi, P; Christensson, B; Uçkay, I; Trampuz, A; Achermann, Y; Boggian, K; Svensson, D; Widerström, M; Zimmerli, W (2011). Group B streptococcus in prosthetic hip and knee joint-associated infections. Journal of Hospital Infection, 79(1):64-69.

Kenfak-Foguena, A; Schöni-Affolter, F; Bürgisser, P; Witteck, A; Darling, K E A; Kovari, H; Kaiser, L; Evison, J M; Elzi, L; Gurter-De La Fuente, V; Jost, J; Moradpour, D; Abravanel, F; Izpopet, J; Cavassini, M (2011). Hepatitis E Virus seroprevalence and chronic infections in patients with HIV, Switzerland. Emerging Infectious Diseases, 17(6):1074-8.

Preiswerk, B; Ullrich, S; Speich, R; Bloemberg, G V; Hombach, M (2011). Human infection with Delftia tsuruhatensis isolated from a central venous catheter. Journal of Medical Microbiology, 60(2):246-248.

Käppeli, U; Hächler, H; Giezendanner, N; Beutin, L; Stephan, Roger (2011). Human infections with non-O157 Shiga toxin–producing Escherichia coli, Switzerland, 2000–2009. Emerging Infectious Diseases, 17(2):180-185.

Scherrer, A U; Ledergerber, B; von Wyl, V; Böni, J; Yerly, S; Klimkait, T; Bürgisser, P; Rauch, A; Hirschel, B; Cavassini, M; Elzi, L; Vernazza, P L; Bernasconi, E; Held, L; Günthard, H F (2011). Improved virological outcome in white patients infected with HIV-1 non-B subtypes compared to subtype B. Clinical Infectious Diseases, 53(11):1143-1152.

Colombo, C; Masserey, V; Ruef, C (2011). Incidence of needlestick injuries and other sharps exposures in Swiss acute care hospitals: results of a sentinel surveillance study. Journal of Hospital Infection, 77(2):181-183.

Dengler, V; Meier Stutzmann, P; Heusser, R; Berger-Bächi, B; McCallum, N (2011). Induction kinetics of the Staphylococcus aureus cell wall stress stimulon in response to different cell wall active antibiotics. BMC Microbiology, 11:16.

Belibasakis, G N; Guggenheim, B (2011). Induction of prostaglandin E(2) and interleukin-6 in gingival fibroblasts by oral biofilms. FEMS Immunology and Medical Microbiology, 63(3):381-386.

Giner, A M; Kuster, S P; Zbinden, R; Ruef, C; Ledergerber, B; Weber, R (2011). Initial management of and outcome in patients with pneumococcal bacteremia: a retrospective study at a Swiss university hospital, 2003-2009. Infection, 39(6):519-526.

Senti, G; Johansen, P; Kündig, T M (2011). Intralymphatic immunotherapy: from the rationale to human applications. In: Valenta, R; Coffman, R L. Vaccines against Allergies. Berlin Heidelberg: Springer, 71-84.

Münz, C (2011). Macroautophagy during innate immune activation. Frontiers in Microbiology, 2:72.

Bansal, V; Metzner, K J; Niederost, B; Leemann, C; Böni, J; Gunthard, H F; Fehr, J S (2011). Minority K65R variants and early failure of antiretroviral therapy in HIV-1-infected Eritrean Immigrant. Emerging Infectious Diseases, 17(10):1966-1968.

Hasse, B; Ledergerber, B; Furrer, H; Battegay, M; Hirschel, B; Cavassini, M; Bertisch, B; Bernasconi, E; Weber, R (2011). Morbidity and aging in HIV-infected persons: the Swiss HIV cohort study. Clinical Infectious Diseases, 53(11):1130-1139.

Young, J; Klein, M B; Ledergerber, B (2011). Noncirrhotic portal hypertension and didanosine: a re-analysis. Clinical Infectious Diseases, 52(1):154-155.

Flores-Figueroa, J; Okhuysen, P C; von Sonnenburg, F; DuPont, H L; Libman, M D; Keystone, J S; Hale, D C; Burchard, G; Han, P V; Wilder-Smith, A; Freedman, D O (2011). Patterns of illness in travelers visiting Mexico and Central America: the GeoSentinel experience. Clinical Infectious Diseases, 53(6):523-531.

Quevedo, B; Giertsen, E; Zijnge, V; Lüthi-Schaller, H; Guggenheim, B; Thurnheer, T; Gmür, R (2011). Phylogenetic group- and species-specific oligonucleotide probes for single-cell detection of lactic acid bacteria in oral biofilms. BMC Microbiology, 11:14.

Agyeman, P; Aebi, C; Hirt, A; Niggli, F K; Nadal, D; Simon, A; Ozsahin, H; Kontny, U; Kühne, T; Beck Popovic, M; Leibundgut, K; Bodmer, N; Ammann, R A (2011). Predicting bacteremia in children with cancer and fever in chemotherapy-induced neutropenia: results of the prospective multicenter SPOG 2003 FN study. The Pediatric Infectious Disease Journal, 30(7):e114-e119.

Ruef, C (2011). Prolonged duration of surgery: a new look at the causes. Infection, 39(3):183-184.

Helfer-Hungerbuehler, A K; Cattori, V; Bachler, B; Hartnack, S; Riond, B; Ossent, P; Lutz, H; Hofmann-Lehmann, R (2011). Quantification and molecular characterization of the feline leukemia virus A receptor. Infection, Genetics and Evolution, 11(8):1940-1950.

Stephan, Roger; Cernela, N; Ziegler, D; Pflüger, V; Tonolla, M; Ravasi, D; Fredriksson-Ahomaa, M; Hächler, H (2011). Rapid species specific identification and subtyping of Yersinia enterocolitica by MALDI-TOF Mass spectrometry. Journal of Microbiological Methods, 87(2):150-153.

Johansen, P; Fettelschoss, A; Amstutz, B; Selchow, P; Waeckerle-Men, Y; Keller, P; Deretic, V; Held, L; Kündig, T M; Böttger, E C; Sander, P (2011). Relief from zmp1-mediated arrest of phagosome maturation is associated with facilitated presentation and enhanced immunogenicity of mycobacterial antigens. Clinical and Vaccine Immunology : CVI, 18(6):907-913.

Stephan, R; Zweifel, C; Fach, P; Morabito, S; Beutin, L (2011). Shiga toxin-producing Escherichia coli in food. In: Hoorfar, J. Rapid detection, characterization, and enumeration of foodborne pathogens. Washington DC, US: ASM Press, 229-239.

Stutz, K; Stephan, Roger; Tasara, Taurai (2011). SpA, ClfA and FnbpA genetic variations lead to Staphaurex test negative phenotypes in bovine mastitis Staphylococcus aureus isolates. Journal of Clinical Microbiology, 49(2):638-646.

Hatz, C; van der Ploeg, R; Beck, B R; Frösner, G; Hunter, M; Herzog, C (2011). Successful memory response following a booster dose with a virosome-formulated hepatitis a vaccine delayed up to 11 years. Clinical and Vaccine Immunology : CVI, 18(5):885-887.

Lange, C E; Zollinger, S; Tobler, K; Ackermann, M; Favrot, C (2011). The clinically healthy skin of dogs is a potential reservoir for canine papillomaviruses. Journal of Clinical Microbiology, 49(2):707-709.

Böttger, E C (2011). The ins and outs of mycobacterium tuberculosis drug susceptibility testing: Themed review 'Therapeutic efficiency in the presence of resistance mechanisms: (when) to give-or not to give?'. Clinical Microbiology and Infection, 17(8):1128-1134.

Griffiths, E C; Pedersen, A B; Fenton, A; Petchey, O L (2011). The nature and consequences of coinfection in humans. Journal of Infection, 63(3):200-206.

Treiger Borema, S E; Schwendener, R A; Osso, J A; de Andrade, H F; Nascimento, N (2011). Uptake and antileishmanial activity of meglumine antimoniate-containing liposomes in Leishmania (Leishmania) major-infected macrophages. International Journal of Antimicrobial Agents, 38(4):341-347.

Kurmann, J; Sydler, T; Brugnera, E; Buergi, E; Haessig, M; Suter, M; Sidler, X (2011). Vaccination of dams increases antibody titer and improves growth parameters in finisher pigs subclinically infected with porcine circovirus type 2. Clinical and Vaccine Immunology : CVI, 18(10):1644-1649.

Baud, D; Goy, G; Osterheld, M C; Borel, Nicole; Vial, Y; Pospischil, Andreas; Greub, G (2011). Waddlia chondrophila: from bovine abortion to human miscarriage. Clinical Infectious Diseases, 52(12):1469-1471.

Ruef, C (2011). Why do physicians prescribe antibiotics? Infection, 39(4):287.

Akhtar, M Z; Roos, J; Middleton, R; Brockmann, J; Vaidya, A; Sinha, S; Friend, P (2011). Yeast perfusion fluid contamination in pancreas transplantation. Journal of Hospital Infection, 78(1):68-69.

Zbinden, A; Köhler, N; Bloemberg, G V (2011). recA-based PCR assay for accurate differentiation of streptococcus pneumoniae from other viridans streptococci. Journal of Clinical Microbiology, 49(2):523-527.

2010

Hombach, Michael; Pfyffer, Gaby E; Roos, Malgorzata; Lucke, Katja (2010). Detection of methicillin-resistant Staphylococcus aureus (MRSA) in specimens from various body sites: performance characteristics of the BD GeneOhm MRSA assay, the Xpert MRSA assay, and broth-enriched culture in an area with a low prevalence of MRSA infections. Journal of Clinical Microbiology, 48(11):3882-3887.

Holland, Steven M; Reichenbach, Janine (2010). Reply to Agger and Kowalski. Clinical Infectious Diseases, 50(9):1325-1326.

Kovari, H; Ebnöther, C; Schweiger, A; Berther, N; Kuster, H; Günthard, H F (2010). Pulmonary toxoplasmosis, a rare but severe manifestation of a common opportunistic infection in late HIV presenters: report of two cases. Infection, 38(2):141-144.

Ibrahim-Granet, O; Jouvion, G; Hohl, T M; Droin-Bergère, S; Philippart, F; Kim, O Y; Adib-Conquy, M; Schwendener, R; Cavaillon, J-M; Brock, M (2010). In vivo bioluminescence imaging and histopathopathologic analysis reveal distinct roles for resident and recruited immune effector cells in defense against invasive aspergillosis. BMC Microbiology, 10:105.

Keiser, J; N'Guessan, N A; Adoubryn, K D; Silué, K D; Vounatsou, P; Hatz, C; Utzinger, J; N'Goran, E K (2010). Efficacy and safety of mefloquine, artesunate, mefloquine-artesunate, and praziquantel against Schistosoma haematobium: randomized, exploratory open-label trial. Clinical Infectious Diseases, 50(9):1205-1213.

Torgerson, P R; Torgerson, D (2010). Public health and bovine tuberculosis: what's all the fuss about? Trends in Microbiology, 18(2):67-72.

McCallum, N; Berger-Bächi, B; Senn, M M (2010). Regulation of antibiotic resistance in Staphylococcus aureus. International Journal of Medical Microbiology, 300(2-3):118-129.

Lucke, K; Kuster, S P; Bertea, M; Ruef, C; Bloemberg, G V (2010). A deep sternal wound infection caused by Ureaplasma urealyticum. Journal of Medical Microbiology, 59(Pt 10):1254-1256.

Joos, B; Rieder, P; Fischer, M; Kuster, H; Rusert, P; Trkola, A; Pillai, S K; Wong, J K; Weber, R; Günthard, H F (2010). Association between specific HIV-1 Env traits and virologic control in vivo. Infection, Genetics and Evolution, 10(3):365-372.

Pospischil, A; Borel, N; Andersen, A A (2010). Chlamydia. In: Carlton, L G; Prescott, J F; Songer, G; Thoen, C O. Pathogenesis of Bacterial Infections in Animals. Ames, Iowa, USA: Wiley-Blackwell, 575-587.

Schorn, R; Höhne, M; Meerbach, A; Bossart, W; Wüthrich, R P; Schreier, E; Müller, N J; Fehr, T (2010). Chronic norovirus infection after kidney transplantation: molecular evidence for immune-driven viral evolution. Clinical Infectious Diseases, 51(3):307-314.

Ruef, C (2010). Delayed diagnosis of tuberculosis. Infection, 38(6):431-432.

Peter-Getzlaff, S; Lüthy, J; Voit, A; Bloemberg, G V; Böttger, E C (2010). Detection and identification of Mycobacterium spp. in clinical specimens by combining the Roche Cobas Amplicor Mycobacterium tuberculosis assay with Mycobacterium genus detection and nucleic acid sequencing. Journal of Clinical Microbiology, 48(11):3943-3948.

Keller, P M; Rampini, S K; Bloemberg, G V (2010). Detection of a mixed infection in a culture-negative brain abscess by broad-spectrum bacterial 16S rRNA gene PCR. Journal of Clinical Microbiology, 48(6):2250-2252.

Barker, E N; Helps, C R; Heesom, K J; Arthur, C J; Peters, I R; Hofmann-Lehmann, R; Tasker, S (2010). Detection of humoral response using a recombinant heat shock protein 70, DnaK, of Mycoplasma haemofelis in experimentally and naturally hemoplasma-infected cats. Clinical and Vaccine Immunology : CVI, 17(12):1926-1932.

Hasse, B; Ledergerber, B; Hirschel, B; Vernazza, P; Glass, T R; Jeannin, A; Evison, J M; Elzi, L; Cavassini, M; Bernasconi, E; Nicca, D; Weber, R (2010). Frequency and determinants of unprotected sex among HIV-infected persons: the Swiss HIV cohort study. Clinical Infectious Diseases, 51(11):1314-1322.

Ciardo, D E; Burger, S; Payer, M; Lee, C; McCallum, N (2010). GeneXpert captures unstable methicillin-resistant Staphylococcus aureus prone to rapidly losing the mecA gene. Journal of Clinical Microbiology, 48(8):3030-3032.

von Wyl, V; Ehteshami, M; Demeter, L M; Bürgisser, P; Nijhuis, M; Symons, J; Yerly, S; Böni, J; Klimkait, T; Schuurman, R; Ledergerber, B; Götte, M; Günthard, H F (2010). HIV-1 reverse transcriptase connection domain mutations: dynamics of emergence and implications for success of combination antiretroviral therapy. Clinical Infectious Diseases, 51(5):620-628.

Cusini, A; Günthard, H F; Stussi, G; Schwarz, U; Fehr, T; Grueter, E; Meerbach, A; Bossart, W; Schaer, D J; Rudiger, A (2010). Hemophagocytic syndrome caused by primary herpes simplex virus 1 infection: report of a first case. Infection, 38(5):423-426.

Wolf-Jäckel, G A; Jäckel, C; Museux, K; Hoelzle, K; Tasker, S; Lutz, H; Hofmann-Lehmann, R (2010). Identification, characterization, and application of a recombinant antigen for the serological investigation of feline hemotropic Mycoplasma infections. Clinical and Vaccine Immunology : CVI, 17(12):1917-1925.

Meli, Marina L; Willi, Barbara; Dreher, U M; Cattori, V; Knubben-Schweizer, Gabriela; Nuss, Karl; Braun, Ueli; Lutz, Hans; Hofmann-Lehmann, Regina (2010). Identification, molecular characterization, and occurrence of two bovine hemoplasma species in Swiss cattle and development of real-time TaqMan quantitative PCR assays for diagnosis of bovine hemoplasma infections. Journal of Clinical Microbiology, 48(10):3563-3568.

Rotger, M; Gsponer, T; Martinez, R; Taffé, P; Elzi, L; Vernazza, P; Cavassini, M; Bernasconi, E; Hirschel, B; Furrer, H; Weber, R; Ledergerber, B; Egger, M; Telenti, A; Tarr, P E; Swiss HIV Cohort Study (2010). Impact of single nucleotide polymorphisms and of clinical risk factors on new‐onset diabetes mellitus in HIV‐infected individuals. Clinical Infectious Diseases, 51(9):1090-1098.

Kovari, H; Ledergerber, B; Battegay, M; Rauch, A; Hirschel, B; Foguena, A K; Vernazza, P; Bernasconi, E; Mueller, N J; Weber, R (2010). Incidence and risk factors for chronic elevation of alanine aminotransferase levels in HIV-infected persons without hepatitis b or c virus co-infection. Clinical Infectious Diseases, 50(4):502-511.

Ruef, C (2010). Infection control measures to prevent the transmission of nosocomial pathogens: can or should there be an international consensus? Infection, 38(3):157-158.

Ferry, T; Hirschel, B; Dang, T; Meylan, P; Delhumeau, C; Rauch, A; Weber, R; Elzi, L; Bernasconi, E; Schmid, P; Calmy, A (2010). Infrequent replication of parvovirus B19 and erythrovirus genotypes 2 and 3 among HIV-infected patients with chronic anemia. Clinical Infectious Diseases, 50(1):115-118.

Hoelzle, K; Peter, S; Sidler, M; Kramer, M M; Wittenbrink, M M; Felder, K M; Hoelzle, L E (2010). Inorganic pyrophosphatase in uncultivable hemotrophic mycoplasmas: identification and properties of the enzyme from Mycoplasma suis. BMC Microbiology, 10:194.

Hauser, P M; Nahimana, A; Taffé, P; Weber, R; Francioli, P; Bille, J; Rabodonirina, M (2010). Interhuman transmission as a potential key parameter for geographical variation in the prevalence of Pneumocystis jirovecii dihydropteroate synthase mutations. Clinical Infectious Diseases, 51(4):e28-e33.

Borel, N; Dumrese, C; Ziegler, U; Schifferli, A; Kaiser, C; Pospischil, A (2010). Mixed infections with Chlamydia and porcine epidemic diarrhea virus - a new in vitro model of chlamydial persistence. BMC Microbiology, 10:201.

Mégevand, C; Gervaix, A; Heininger, U; Berger, C; Aebi, C; Vaudaux, B; Kind, C; Gnehm, H-P; Hitzler, M; Renzi, G; Schrenzel, J; François, P (2010). Molecular epidemiology of the nasal colonization by methicillin-susceptible Staphylococcus aureus in Swiss children. Clinical Microbiology and Infection, 16(9):1414-1420.

Borel, N; Pospischil, A; Greub, G (2010). Parachlamydia acanthamoebae and Its Zoonotic Risk. Clinical Microbiology Newsletter, 32(24):185-191.

Ruef, C (2010). Prosthetic joint infections: what to do if the C-reactive protein level remains elevated. Infection, 38(4):247.

Blum, J A; Pfeifer, S; Hatz, C F (2010). Psychiatric manifestations as the leading symptom in an expatriate with dengue fever. Infection, 38(4):341-343.

Stephan, Roger; Ziegler, D; Pflüger, V; Vogel, G; Lehner, Angelika (2010). Rapid genus and species specific identification of Cronobacter spp. by MALDI-TOF Mass spectrometry. Journal of Clinical Microbiology, 48(8):2846-2851.

Keller, P M; Rampini, S K; Büchler, A C; Eich, G; Wanner, R M; Speck, R F; Böttger, E C; Bloemberg, G V (2010). Recognition of potentially novel human disease-associated pathogens by implementation of systematic 16S rRNA gene sequencing in the diagnostic laboratory. Journal of Clinical Microbiology, 48(9):3397-3402.

Kovari, H; Ledergerber, B; Weber, R (2010). Reply to Chang and Garcia-Pagan. Clinical Infectious Diseases, 50(1):128-129.

Kuster, S P; Hasse, B; Huebner, V; Bansal, V; Zbinden, R; Ruef, C; Ledergerber, B; Weber, R (2010). Risks factors for infections with extended-spectrum beta-lactamase-producing Escherichia coli and Klebsiella pneumoniae at a tertiary care university hospital in Switzerland. Infection, 38(1):33-40.

Fehr, J S; Bloemberg, G V; Ritter, C; Hombach, M; Lüscher, T F; Weber, R; Keller, P M (2010). Septicemia caused by tick-borne bacterial pathogen Candidatus Neoehrlichia mikurensis. Emerging Infectious Diseases, 16(7):1127-1129.

Thalwitzer, S; Wachter, B; Robert, N; Wibbelt, G; Müller, T; Lonzer, J; Meli, M L; Bay, G; Hofer, H; Lutz, H (2010). Seroprevalences to viral pathogens in free-ranging and captive cheetahs (Acinonyx jubatus) on Namibian farmland. Clinical and Vaccine Immunology : CVI, 17(2):232-238.

Schlagenhauf, Patricia; Chen, Lin H; Wilson, Mary E; Freedman, David O; Tcheng, David; Schwartz, Eli; Pandey, Prativa; Weber, Rainer; Nadal, David; Berger, Christoph; von Sonnenburg, Frank; Keystone, Jay; Leder, Karin (2010). Sex and gender differences in travel-associated disease. Clinical Infectious Diseases, 50(6):826-832.

Kovari, H; Ledergerber, B; Weber, R (2010). Should HIV-infected patients with unexplained chronic liver enzyme elevations be tested for hepatitis E virus? Letter reply. Clinical Infectious Diseases, 50(11):1546-1547.

Ciardo, D E; Lucke, K; Imhof, A; Bloemberg, G V; Böttger, E C (2010). Systematic internal transcribed spacer sequence analysis for identification of clinical mold isolates in diagnostic mycology: a 5-year study. Journal of Clinical Microbiology, 48(8):2809-2813.

Schlagenhauf, Patricia; Santos-O'Connor, F; Parola, Philippe (2010). The practice of travel medicine in Europe. Clinical Microbiology and Infection, 16(3):203-208.

Ruef, C (2010). Turning hand hygiene into a habit: the need is obvious. Infection, 38(5):347.

2009

Jacobi, C A; Schiffner, F; Henkel, M; Waibel, M; Stork, B; Daubrawa, M; Eberl, L; Gregor, M; Wesselborg, S (2009). Effects of bacterial N-acyl homoserine lactones on human Jurkat T lymphocytes-OdDHL induces apoptosis via the mitochondrial pathway. International Journal of Medical Microbiology, 299(7):509-519.

Chen, Lin H; Wilson, Mary E; Davis, Xiaohong; Loutan, Louis; Schwartz, Eli; Keystone, Jay; Hale, Devon; Lim, Poh L; McCarthy, Anne; Gkrania-Klotsas, Effrossyni; Schlagenhauf, Patricia (2009). Illness in Long-Term Travelers Visiting GeoSentinel Clinics. Emerging Infectious Diseases, 15(11):1773-1782.

Ender, M; Burger, S; Sokoli, A; Zbinden, R; Berger-Bächi, B; Heusser, R