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Items where Subject is "04 Faculty of Medicine > Institute of Medical Virology"

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Wegner, Fanny; Cabrera-Gil, Blanca; Tanguy, Araud; Beckmann, Christiane; Beerenwinkel, Niko; Bertelli, Claire; Carrara, Matteo; Cerutti, Lorenzo; Chen, Chaoran; Cordey, Samuel; Dumoulin, Alexis; du Plessis, Louis; Friedli, Marc; Gerth, Yannick; Greub, Gilbert; Härri, Adrian; Hirsch, Hans; Howald, Cedric; Huber, Michael; Imhof, Alexander; Kaiser, Laurent; Kufner, Verena; Leib, Stephen L; Leuzinger, Karoline; Lleshi, Etleva; Martinetti, Gladys; Mäusezahl, Mirjam; Neher, Richard; Trkola, Alexandra; Egli, Adrian; et al; SPSP consortium (2024). How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort. Microbiology Spectrum, 12(5):e0362823.

Künzler-Heule, Patrizia; Schmidt, Axel J; Fierz, Katharina; Battegay, Manuel; Engberg, Sandra; Kouyos, Roger D; Nöstlinger, Christiana; Stöckle, Marcel; Béguelin, Charles; Delaloye, Julie; Schmid, Patrick; Rougemont, Mathieu; Braun, Dominique L; Fehr, Jan S; Nicca, Dunja (2024). Exploring group differences in the response to a sexual risk reduction intervention to prevent hepatitis C virus reinfection in HIV-infected MSM: a mixed-methods study. AIDS Care, 36(4):442-451.

Trkola, Alexandra; Moore, Penny L (2024). Vaccinating people living with HIV: a fast track to preventive and therapeutic HIV vaccines. Lancet Infectious Diseases, 24(4):e252-e255.

Hedskog, Charlotte; Spinner, Christoph D; Protzer, Ulrike; Hoffmann, Dieter; Ko, Chunkyu; Gottlieb, Robert L; Askar, Medhat; Roestenberg, Meta; de Vries, Jutte J C; Carbo, Ellen C; Martin, Ross; Li, Jiani; Han, Dong; Rodriguez, Lauren; Parvangada, Aiyappa; Perry, Jason K; Ferrer, Ricard; Antón, Andrés; Andrés, Cristina; Casares, Vanessa; Günthard, Huldrych F; Huber, Michael; McComsey, Grace A; Sadri, Navid; Aberg, Judith A; van Bakel, Harm; Porter, Danielle P (2024). No Remdesivir Resistance Observed in the Phase 3 Severe and Moderate COVID-19 SIMPLE Trials. Viruses, 16(4):546.

Foulkes, Caio. HIV-1 Envelope Plasticity and Its Interplay with Broad Neutralizing Antibody Activity. 2024, University of Zurich, Faculty of Science.

Schiefer, Samira Nadine. Analysis of Human Interferon Signaling and its Regulation. 2024, University of Zurich, Faculty of Science.

Zeeb, Marius; Frischknecht, Paul; Huber, Michael; Schenkel, Corinne D; Neumann, Kathrin; Leeman, Christine; Notter, Julia; Rauch, Andri; Stöckle, Marcel; Cavassini, Matthias; Bernasconi, Enos; Braun, Dominique L; Günthard, Huldrych F; Metzner, Karin J; Kouyos, Roger D (2024). Genetic diversity from proviral DNA as a proxy for time since HIV-1 infection. Journal of Infectious Diseases:Epub ahead of print.

Mocroft, Amanda; Pelchen-Matthews, Annegret; Hoy, Jennifer; Llibre, Josep M; Neesgaard, Bastian; Jaschinski, Nadine; Domingo, Pere; Rasmussen, Line Dahlerup; Günthard, Huldrych F; Surial, Bernard; Öllinger, Angela; Knappik, Michael; De Wit, Stephan; Wit, Ferdinand; Mussini, Cristina; Vehreschild, Joerg; Monforte, Antonella d'Arminio; Sönnerborg, Anders; Castagna, Antonella; Anne, Alain Volny; Vannappagari, Vani; Cohen, Cal; Greaves, Wayne; Wasmuth, Jan C; Spagnuolo, Vincenzo; Ryom, Lene; RESPOND, cohort collaboration (2024). Heavy arv exposure and exhausted/limited arv options: predictors and clinical outcomes. AIDS, 38(4):497-508.

Klinnert, Sarah; Schenkel, Corinne D; Freitag, Patrick C; Günthard, Huldrych F; Plückthun, Andreas; Metzner, Karin J (2024). Targeted shock-and-kill HIV-1 gene therapy approach combining CRISPR activation, suicide gene tBid and retargeted adenovirus delivery. Gene Therapy, 31(3-4):74-84.

Manuel, Oriol; Laager, Mirjam; Hirzel, Cédric; Neofytos, Dionysios; Walti, Laura N; Hoenger, Gideon; Binet, Isabelle; Schnyder, Aurelia; Stampf, Susanne; Koller, Michael; Mombelli, Matteo; Kim, Min Jeong; Hoffmann, Matthias; Koenig, Katrin; Hess, Christoph; Burgener, Anne-Valérie; Cippà, Pietro E; Hübel, Kerstin; Mueller, Thomas F; Sidler, Daniel; Dahdal, Suzan; Suter-Riniker, Franziska; Villard, Jean; Zbinden, Andrea; Pantaleo, Giuseppe; Semmo, Nasser; Hadaya, Karine; Enríquez, Natalia; Meylan, Pascal R; Froissart, Marc; et al; Mueller, Nicolas J (2024). Immune monitoring-guided vs fixed duration of antiviral prophylaxis against cytomegalovirus in solid-organ transplant recipients. A Multicenter, Randomized Clinical Trial. Clinical Infectious Diseases, 78(2):312-323.

Chammartin, Frédérique; Griessbach, Alexandra N; Kusejko, Katharina; Audigé, Annette; Epp, Selina; Stoeckle, Marcel P; Eichenberger, Anna L; Amstutz, Alain; Schoenenberger, Christof M; Hasse, Barbara; Braun, Dominique L; Rauch, Andri; Trkola, Alexandra; Briel, Matthias; Bucher, Heiner C; Günthard, Huldrych F; Speich, Benjamin; Abela, Irene A; Swiss HIV Cohort Study (2024). Bridging the Gap: identifying factors impacting mRNA SARS-CoV-2 vaccine booster response in people living with HIV-1. AIDS, 38(2):217-222.

Riebensahm, Carlotta; Berzigotti, Annalisa; Surial, Bernard; Haerry, David; Günthard, Huldrych F; Tarr, Philip E; Furrer, Hansjakob; Rauch, Andri; Wandeler, Gilles; Swiss HIV Cohort Study (2024). Decreased Physical Activity and Prolonged Sitting Time Are Associated With Liver Steatosis in People With HIV. Journal of Acquired Immune Deficiency Syndromes, 95(2):179-184.

Begré, Lorin; Boyd, Anders; Salazar-Vizcaya, Luisa; Suter-Riniker, Franziska; Béguelin, Charles; Rockstroh, Jürgen K; Günthard, Huldrych F; Calmy, Alexandra; Cavassini, Matthias; Stöckle, Marcel; Schmid, Patrick; Bernasconi, Enos; Levrero, Massimo; Zoulim, Fabien; Wandeler, Gilles; Rauch, Andri; Swiss HIV Cohort Study (SHCS) (2024). Long-term quantitative hepatitis B surface antigen (HBsAg) trajectories in persons with and without HBsAg loss on tenofovir-containing antiretroviral therapy. HIV Medicine, 25(2):291-298.

Abela, Irene A; Schwarzmüller, Magdalena; Ulyte, Agne; Radtke, Thomas; Haile, Sarah R; Ammann, Priska; Raineri, Alessia; Rueegg, Sonja; Epp, Selina; Berger, Christoph; Böni, Jürg; Manrique, Amapola; Audigé, Annette; Huber, Michael; Schreiber, Peter W; Scheier, Thomas; Fehr, Jan; Weber, Jacqueline; Rusert, Peter; Günthard, Huldrych F; Kouyos, Roger D; Puhan, Milo A; Kriemler, Susi; Trkola, Alexandra; Pasin, Chloé (2024). Cross-protective HCoV immunity reduces symptom development during SARS-CoV-2 infection. mBio, 15(2):e0272223.

Abela, Irene A; Hauser, Anthony; Schwarzmüller, Magdalena; Pasin, Chloé; Kusejko, Katharina; Epp, Selina; Cavassini, Matthias; Battegay, Manuel; Rauch, Andri; Calmy, Alexandra; Notter, Julia; Bernasconi, Enos; Fux, Christoph A; Leuzinger, Karoline; Perreau, Matthieu; Ramette, Alban; Gottschalk, Jochen; Schindler, Eméry; Wepf, Alexander; Marconato, Maddalena; Manz, Markus G; Frey, Beat M; Braun, Dominique L; Huber, Michael; Günthard, Huldrych F; Trkola, Alexandra; Kouyos, Roger D; Swiss HIV Cohort Study (2024). Deciphering factors linked with reduced SARS-CoV-2 susceptibility in the Swiss HIV Cohort Study. Journal of Infectious Diseases:Epub ahead of print.

Hentzien, Maxime; Frossard, Jaromil; Kouyos, Roger; Prendki, Virginie; Damas, José; Hofmann, Eveline; Braun, Dominique; Schmid, Patrick; Bernasconi, Enos; Ragozzino, Silvio; Efthimiou, Orestis; Delpierre, Cyrille; Allavena, Clotilde; Bani-Sadr, Firouzé; Calmy, Alexandra (2024). External validation of the Dat'AIDS score: A risk score for predicting 5-year overall mortality in people living with HIV aged 60 years or older. HIV Medicine, 25(1):72-82.

Hovaguimian, Frédérique; Kouyos, Roger D; Kusejko, Katharina; Schmidt, Axel J; Tarr, Philip E; Bernasconi, Enos; Braun, Dominique L; Calmy, Alexandra; Notter, Julia; Stoeckle, Marcel; Surial, Bernard; Christinet, Vanessa; Darling, Katharine E A; Depmeier, Carsten; Läuchli, Severin; Reinacher, Matthias; Rasi, Manuela; Nicca, Dunja; Bruggmann, Philip; Haerry, David; Bize, Raphaël; Low, Nicola; Vock, Florian; El Amari, Emmanuelle Boffi; Böni, Jürg; Bosshard, Philipp P; Fehr, Jan S; Hampel, Benjamin; SwissPrEPared Cohort Study (2024). Incidence of sexually transmitted infections and association with behavioural factors: Time-to-event analysis of a large pre-exposure prophylaxis (PrEP) cohort. HIV Medicine, 25(1):117-128.

Baumann, Lukas; Braun, Dominique L; Cavassini, Matthias; Stoeckle, Marcel; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Haerry, David; Béguelin, Charles; Fux, Christoph A; Wandeler, Gilles; Surial, Bernard; Rauch, Andri (2024). Long-term trends in hepatitis C prevalence, treatment uptake and liver-related events in the Swiss HIV Cohort Study. Liver International, 44(1):169-179.

Achleitner, Martin; Mair, Nina K; Dänhardt, Juliane; Kardashi, Romina; Puhan, Milo A; Abela, Irene A; Toepfner, Nicole; de With, Katja; Kanczkowski, Waldemar; Jarzebska, Natalia; Rodionov, Roman N; Wolf, Christine; Lee-Kirsch, Min Ae; Steenblock, Charlotte; Hale, Benjamin G; Bornstein, Stefan R (2024). Absence of Type I Interferon Autoantibodies or Significant Interferon Signature Alterations in Adults With Post-COVID-19 Syndrome. Open Forum Infectious Diseases, 11(1):ofad641.

Thoueille, Paul; Saldanha, Susana Alves; Schaller, Fabian; Choong, Eva; Munting, Aline; Cavassini, Matthias; Braun, Dominique; Günthard, Huldrych F; Kusejko, Katharina; Surial, Bernard; Furrer, Hansjakob; Rauch, Andri; Rougemont, Mathieu; Ustero, Pilar; Calmy, Alexandra; Stöckle, Marcel; Marzolini, Catia; Di Benedetto, Caroline; Bernasconi, Enos; Schmid, Patrick; Piso, Rein Jan; Andre, Pascal; Girardin, François R; Guidi, Monia; Buclin, Thierry; Decosterd, Laurent A; Swiss HIV Cohort Study (2024). Real-world trough concentrations and effectiveness of long-acting cabotegravir and rilpivirine: a multicenter prospective observational study in Switzerland. The Lancet Regional Health : Europe, 36:100793.

Meissner, Ramona; Wixler, Viktor; Wulfert, Franziska Paulina; Jacob, Jasmin Carina; Hale, Benjamin G; Robeck, Thomas; Masemann, Dörthe; Boergeling, Yvonne; Ludwig, Stephan (2023). Replication-incompetent influenza A viruses armed with IFN-γ effectively mediate immune modulation and tumor destruction in mice harboring lung cancer. Molecular Therapy : Oncolytics, 31:100741.

Glas, Irina; David, Shannon C (2023). A new chapter of healthy indoor air: antiviral air treatments. EMBO Molecular Medicine, 15(12):e18710.

Zeeb, Marius; Tepekule, Burcu; Kusejko, Katharina; Reiber, Claudine; Kälin, Marisa; Bartl, Lena; Notter, Julia; Furrer, Hansjakob; Hoffmann, Matthias; Hirsch, Hans H; Calmy, Alexandra; Cavassini, Matthias; Labhardt, Niklaus D; Bernasconi, Enos; Braun, Dominique L; Günthard, Huldrych F; Kouyos, Roger D; Nemeth, Johannes; Swiss HIV Cohort Study (2023). Understanding the decline of incident, active tuberculosis in people with HIV in Switzerland. Clinical Infectious Diseases, 77(9):1303-1311.

Loosli, Tom; Hossmann, Stefanie; Ingle, Suzanne M; Okhai, Hajra; Kusejko, Katharina; Mouton, Johannes; Bellecave, Pantxika; van Sighem, Ard; Stecher, Melanie; d'Arminio Monforte, Antonella; Gill, M John; Sabin, Caroline A; Maartens, Gary; Günthard, Huldrych F; Sterne, Jonathan A C; Lessells, Richard; Egger, Matthias; Kouyos, Roger D (2023). HIV-1 drug resistance in people on dolutegravir-based antiretroviral therapy: a collaborative cohort analysis. The Lancet : HIV, 10(11):e733-e741.

Griessbach, Alexandra; Chammartin, Frédérique; Abela, Irene A; Amico, Patrizia; Stoeckle, Marcel P; Eichenberger, Anna L; Hasse, Barbara; Braun, Dominique L; Schuurmans, Macé M; Müller, Thomas F; Tamm, Michael; Audigé, Annette; Mueller, Nicolas J; Rauch, Andri; Günthard, Huldrych F; Koller, Michael T; Trkola, Alexandra; Epp, Selina; Amstutz, Alain; Schönenberger, Christof M; Taji Heravi, Ala; Papadimitriou-Olivgeris, Matthaios; Casutt, Alessio; Manuel, Oriol; Kusejko, Katharina; Bucher, Heiner C; Briel, Matthias; Speich, Benjamin; Swiss HIV Cohort Study and the Swiss Transplant Cohort Study (2023). Antibody Response After the Third SARS-CoV-2 Vaccine in Solid Organ Transplant Recipients and People Living With HIV (COVERALL-2). Open Forum Infectious Diseases, 10(11):ofad536.

Iseli, Alena N; Pohl, Marie O; Glas, Irina; Gaggioli, Elisabeth; Martínez-Barragán, Patricia; David, Shannon C; Schaub, Aline; Luo, Beiping; Klein, Liviana K; Bluvshtein, Nir; Violaki, Kalliopi; Motos, Ghislain; Hugentobler, Walter; Nenes, Athanasios; Krieger, Ulrich K; Peter, Thomas; Kohn, Tamar; Stertz, Silke (2023). The neuraminidase activity of influenza A virus determines the strain-specific sensitivity to neutralization by respiratory mucus. Journal of Virology, 97(10):e0127123.

David, Shannon C; Vadas, Oscar; Glas, Irina; Schaub, Aline; Luo, Beiping; D'angelo, Giovanni; Montoya, Jonathan Paz; Bluvshtein, Nir; Hugentobler, Walter; Klein, Liviana K; Motos, Ghislain; Pohl, Marie; Violaki, Kalliopi; Nenes, Athanasios; Krieger, Ulrich K; Stertz, Silke; Peter, Thomas; Kohn, Tamar (2023). Inactivation mechanisms of influenza A virus under pH conditions encountered in aerosol particles as revealed by whole-virus HDX-MS. mSphere, 8(5):e0022623.

Caraballo Cortés, Kamila; Osuch, Sylwia; Perlejewski, Karol; Radkowski, Marek; Janiak, Maciej; Berak, Hanna; Rauch, Andri; Fehr, Jan S; Hoffmann, Matthias; Günthard, Huldrych F; Metzner, Karin J (2023). T-Cell Exhaustion in HIV-1/Hepatitis C Virus Coinfection Is Reduced After Successful Treatment of Chronic Hepatitis C. Open Forum Infectious Diseases, 10(11):ofad514.

Brown, Jennifer A; Hauser, Anthony; Abela, Irene A; Pasin, Chloé; Epp, Selina; Mohloanyane, Tsepang; Nsakala, Bienvenu L; Trkola, Alexandra; Labhardt, Niklaus D; Kouyos, Roger D; Günthard, Huldrych F (2023). Seroprofiling of Antibodies Against Endemic Human Coronaviruses and Severe Acute Respiratory Syndrome Coronavirus 2 in a Human Immunodeficiency Virus Cohort in Lesotho: Correlates of Antibody Response and Seropositivity. Journal of Infectious Diseases, 228(8):1042-1054.

West, Emily; Zeeb, Marius; Grube, Christina; Kuster, Herbert; Wanner, Katrin; Scheier, Thomas; Neumann, Kathrin; Jörimann, Lisa; Hampel, Benjamin; Metzner, Karin J; Kouyos, Roger D; Braun, Dominique L; Günthard, Huldrych F (2023). Sustained Viral Suppression With Dolutegravir Monotherapy Over 192 Weeks in Patients Starting Combination Antiretroviral Therapy During Primary Human Immunodeficiency Virus Infection (EARLY-SIMPLIFIED): A Randomized, Controlled, Multi-site, Noninferiority Trial. Clinical Infectious Diseases, 77(7):1012-1020.

Jörimann, Lisa; Tschumi, Jasmin; Zeeb, Marius; Leemann, Christine; Schenkel, Corinne D; Neumann, Kathrin; Chaudron, Sandra E; Zaheri, Maryam; Frischknecht, Paul; Neuner-Jehle, Nadia; Kuster, Herbert; Braun, Dominique L; Grube, Christina; Kouyos, Roger; Metzner, Karin J; Günthard, Huldrych F; Swiss HIV Cohort Study (SHCS) (2023). Absence of Proviral Human Immunodeficiency Virus (HIV) Type 1 Evolution in Early-Treated Individuals With HIV Switching to Dolutegravir Monotherapy During 48 Weeks. Journal of Infectious Diseases, 228(7):907-918.

Pichler, Ian; Schmutz, Stefan; Ziltener, Gabriela; Zaheri, Maryam; Kufner, Verena; Trkola, Alexandra; Huber, Michael (2023). Rapid and sensitive single-sample viral metagenomics using Nanopore Flongle sequencing. Journal of Virological Methods, 320:114784.

Maliqi, Liridona; Friedrich, Nikolas; Glögl, Matthias; Schmutz, Stefan; Schmidt, Daniel; Rusert, Peter; Schanz, Merle; Zaheri, Maryam; Pasin, Chloé; Niklaus, Cyrille; Foulkes, Caio; Reinberg, Thomas; Dreier, Birgit; Abela, Irene; Peterhoff, David; Hauser, Alexandra; Kouyos, Roger D; Günthard, Huldrych F; van Gils, Marit J; Sanders, Rogier W; Wagner, Ralf; Plückthun, Andreas; Trkola, Alexandra (2023). Assessing immunogenicity barriers of the HIV-1 envelope trimer. NPJ vaccines, 8(1):148.

Schwenke, Johannes M; Thorball, Christian W; Schoepf, Isabella C; Ryom, Lene; Hasse, Barbara; Lamy, Olivier; Calmy, Alexandra; Wandeler, Gilles; Marzolini, Catia; Kahlert, Christian R; Bernasconi, Enos; Kouyos, Roger D; Günthard, Huldrych F; Ledergerber, Bruno; Fellay, Jacques; Burkhalter, Felix; Tarr, Philip E; Swiss HIV Cohort Study (2023). Association of a Polygenic Risk Score With Osteoporosis in People Living With HIV: The Swiss HIV Cohort Study. Journal of Infectious Diseases, 228(6):742-750.

Surial, Bernard; Chammartin, Frédérique; Damas, José; Calmy, Alexandra; Haerry, David; Stöckle, Marcel; Schmid, Patrick; Bernasconi, Enos; Fux, Christoph A; Tarr, Philip E; Günthard, Huldrych F; Wandeler, Gilles; Rauch, Andri; Swiss HIV Cohort Study (2023). Impact of Integrase Inhibitors on Cardiovascular Disease Events in People With Human Immunodeficiency Virus Starting Antiretroviral Therapy. Clinical Infectious Diseases, 77(5):729-737.

Jaha, Bashkim; Schenkel, Corinne D; Jörimann, Lisa; Huber, Michael; Zaheri, Maryam; Neumann, Kathrin; Leemann, Christine; Calmy, Alexandra; Cavassini, Matthias; Kouyos, Roger D; Günthard, Huldrych F; Metzner, Karin J; Swiss HIV Cohort Study (2023). Prevalence of HIV-1 drug resistance mutations in proviral DNA in the Swiss HIV Cohort Study, a retrospective study from 1995 to 2018. Journal of Antimicrobial Chemotherapy, 78(9):2323-2334.

Perakakis, Nikolaos; Harb, Hani; Hale, Benjamin G; Varga, Zsuzsanna; Steenblock, Charlotte; Kanczkowski, Waldemar; Alexaki, Vasileia Ismini; Ludwig, Barbara; Mirtschink, Peter; Solimena, Michele; Toepfner, Nicole; Zeissig, Sebastian; Gado, Manuel; Abela, Irene Alma; Beuschlein, Felix; Spinas, Giatgen A; Cavelti-Weder, Claudia; Gerber, Philipp A; Huber, Michael; Trkola, Alexandra; Puhan, Milo A; Wong, Wendy Wei-Lynn; Linkermann, Andreas; Mohan, Viswanathan; Lehnert, Hendrik; Nawroth, Peter; Chavakis, Triantafyllos; Mingrone, Geltrude; Wolfrum, Christian; Zinkernagel, Annelies S; et al (2023). Mechanisms and clinical relevance of the bidirectional relationship of viral infections with metabolic diseases. The Lancet. Diabetes & Endocrinology, 11(9):675-693.

Hovaguimian, Frédérique; Beeler, Patrick E; Müllhaupt, Beat; Günthard, Huldrych F; Maeschli, Bettina; Bruggmann, Philip; Fehr, Jan S; Kouyos, Roger D (2023). Mortality and morbidity related to hepatitis C virus infection in hospitalized adults-A propensity score matched analysis. Journal of Viral Hepatitis, 30(9):765-774.

Inzaule, Seth C; Siedner, Mark J; Little, Susan J; Avila-Rios, Santiago; Ayitewala, Alisen; Bosch, Ronald J; Calvez, Vincent; Ceccherini-Silberstein, Francesca; Charpentier, Charlotte; Descamps, Diane; Eshleman, Susan H; Fokam, Joseph; Frenkel, Lisa M; Gupta, Ravindra K; Ioannidis, John P A; Kaleebu, Pontiano; Kantor, Rami; Kassaye, Seble G; Kosakovsky Pond, Sergei L; Kouamou, Vinie; Kouyos, Roger D; Kuritzkes, Daniel R; Lessells, Richard; Marcelin, Anne-Genevieve; Mbuagbaw, Lawrence; Minalga, Brian; Ndembi, Nicaise; Neher, Richard A; Paredes, Roger; Pillay, Deenan; et al; Gunthard, Huldrych F; et al (2023). Recommendations on data sharing in HIV drug resistance research. PLoS Medicine, 20(9):e1004293.

Estill, Janne; Venkova-Marchevska, Plamenna; Günthard, Huldrych F; Botero-Mesa, Sara; Thiabaud, Amaury; Roelens, Maroussia; Vancauwenberghe, Laure; Damonti, Lauro; Heininger, Ulrich; Iten, Anne; Schreiber, Peter W; Sommerstein, Rami; Tschudin-Sutter, Sarah; Troillet, Nicolas; Vuichard-Gysin, Danielle; Widmer, Andreas; Hothorn, Torsten; Keiser, Olivia (2023). Treatment effect of remdesivir on the mortality of hospitalised COVID-19 patients in Switzerland across different patient groups: a tree-based model analysis. Swiss Medical Weekly, 153:40095.

Zürcher, Kathrin; Abela, Irene A; Stange, Madlen; Dupont, Carole; Mugglin, Catrina; Egli, Adrian; Trkola, Alexandra; Egger, Matthias; Fenner, Lukas (2023). Alpha variant coronavirus outbreak in a nursing home despite high vaccination coverage: molecular, epidemiological and immunological studies. Clinical Infectious Diseases, 77(4):537-546.

Álvarez, Hortensia; Mocroft, Amanda; Ryom, Lene; Neesgaard, Bastian; Edwards, Simon; Svedhem, Veronica; Günthard, Huldrych F; Zangerle, Robert; Smith, Colette; Castagna, Antonella; d'Arminio Monforte, Antonella; Wit, Ferdinand; Stecher, Melanie; Lehman, Clara; Mussini, Cristina; Fontas, Eric; González, Eva; Wasmuth, Jan-Christian; Sönnerborg, Anders; De Wit, Stéphane; Chkhartishvili, Nikoloz; Stephan, Christoph; Petoumenos, Kathy; Jaschinski, Nadine; Vannappagari, Vani; Gallant, Joel; Young, Lital; Volny Anne, Alain; Greenberg, Lauren; Martín-Iguacel, Raquel; et al (2023). Plasma Human Immunodeficiency Virus 1 RNA and CD4$^{+}$ T-Cell Counts Are Determinants of Virological Nonsuppression Outcomes With Initial Integrase Inhibitor-Based Regimens: A Prospective RESPOND Cohort Study. Clinical Infectious Diseases, 77(4):593-605.

Glögl, Matthias; Friedrich, Nikolas; Cerutti, Gabriele; Lemmin, Thomas; Kwon, Young D; Gorman, Jason; Maliqi, Liridona; Mittl, Peer R E; Hesselman, Maria C; Schmidt, Daniel; Weber, Jacqueline; Foulkes, Caio; Dingens, Adam S; Bylund, Tatsiana; Olia, Adam S; Verardi, Raffaello; Reinberg, Thomas; Baumann, Nicolas S; Rusert, Peter; Dreier, Birgit; Shapiro, Lawrence; Kwong, Peter D; Plückthun, Andreas; Trkola, Alexandra (2023). Trapping the HIV-1 V3 loop in a helical conformation enables broad neutralization. Nature Structural & Molecular Biology, 30(9):1323-1336.

Mugglin, Catrina; Hamusonde, Kalongo; Salazar-Vizcaya, Luisa; Kusejko, Katharina; Nicca, Dunja; Haerry, David; Braun, Dominique L; Stoeckle, Marcel; Kouyos, Roger; Calmy, Alexandra; Cavassini, Matthias; Cipriani, Michela; Bernasconi, Enos; Rauch, Andri; Hachfeld, Anna; Swiss HIV Cohort Study (SHCS) (2023). Sexual Behaviour and STI Incidence in Sexually Active MSM Living With HIV in Times of COVID-19. Open Forum Infectious Diseases, 10(8):ofad399.

McLaren, Paul J; Porreca, Immacolata; Iaconis, Gennaro; Mok, Hoi Ping; Mukhopadhyay, Subhankar; Karakoc, Emre; Cristinelli, Sara; Pomilla, Cristina; Bartha, István; Thorball, Christian W; Tough, Riley H; Angelino, Paolo; Kiar, Cher S; Carstensen, Tommy; Fatumo, Segun; Porter, Tarryn; Jarvis, Isobel; Skarnes, William C; Bassett, Andrew; DeGorter, Marianne K; Sathya Moorthy, Mohana Prasad; Tuff, Jeffrey F; Kim, Eun-Young; Walter, Miriam; Simons, Lacy M; Bashirova, Arman; Buchbinder, Susan; Carrington, Mary; Cossarizza, Andrea; De Luca, Andrea; et al; Trkola, Alexandra (2023). Africa-specific human genetic variation near CHD1L associates with HIV-1 load. Nature, 620(7976):1025-1030.

Kristen-Burmann, Claudia; Rogger, Peter; Veiga, Inês Berenguer; Riebesehl, Stefanie; Rappe, Julie; Ebert, Nadine; Sautter, Carmen A; Kelly, Jenna N; Stalder, Hanspeter; Ehmann, Rosina; Huber, Michael; Posthaus, Horst; Ruggli, Nicolas; Thiel, Volker; Tekes, Gergely (2023). Reverse Genetic Assessment of the Roles Played by the Spike Protein and ORF3 in Porcine Epidemic Diarrhea Virus Pathogenicity. Journal of Virology, 97(7):e0196422.

Pasin, Chloé; Consiglio, Camila R; Huisman, Jana S; de Lange, Ann-Marie G; Peckham, Hannah; Vallejo-Yagüe, Enriqueta; Abela, Irene A; Islander, Ulrika; Neuner-Jehle, Nadia; Pujantell, Maria; Roth, Olivia; Schirmer, Melanie; Tepekule, Burcu; Zeeb, Marius; Hachfeld, Anna; Aebi-Popp, Karoline; Kouyos, Roger D; Bonhoeffer, Sebastian (2023). Sex and gender in infection and immunity: addressing the bottlenecks from basic science to public health and clinical applications. Royal Society Open Science, 10(7):221628.

Otte, Fabian; Zhang, Yuepeng; Spagnuolo, Julian; Thielen, Alexander; Däumer, Martin; Wiethe, Carsten; Stoeckle, Marcel; Kusejko, Katharina; Klein, Florian; Metzner, Karin J; Klimkait, Thomas; Swiss HIV Cohort Study (2023). Revealing viral and cellular dynamics of HIV-1 at the single-cell level during early treatment periods. Cell Reports Methods, 3(6):100485.

Avery, Emma F; Kleynhans, Julia N; Ledergerber, Bruno; Schoepf, Isabella C; Thorball, Christian W; Kootstra, Neeltje A; Reiss, Peter; Ryom, Lene; Braun, Dominique L; Thurnheer, Maria Christine; Marzolini, Catia; Seneghini, Marco; Bernasconi, Enos; Cavassini, Matthias; Buvelot, Hélène; Kouyos, Roger D; Fellay, Jacques; Günthard, Huldrych F; Tarr, Philip E; Swiss HIV Cohort Study (2023). Leukocyte Count and Coronary Artery Disease Events in People With Human Immunodeficiency Virus: A Longitudinal Study. Clinical Infectious Diseases, 76(11):1969-1979.

Thoueille, Paul; Alves Saldanha, Susana; Desfontaine, Vincent; Kusejko, Katharina; Courlet, Perrine; André, Pascal; Cavassini, Matthias; Decosterd, Laurent A; Buclin, Thierry; Guidi, Monia; Swiss HIV Cohort Study (2023). Population pharmacokinetic modelling to characterize the effect of chronic kidney disease on tenofovir exposure after tenofovir alafenamide administration. Journal of Antimicrobial Chemotherapy, 78(6):1433-1443.

Kusejko, Katharina; Smith, Daniel; Scherrer, Alexandra; Paioni, Paolo; Kohns Vasconcelos, Malte; Aebi-Popp, Karoline; Kouyos, Roger D; Günthard, Huldrych F; Kahlert, Christian R; Swiss HIV Cohort Study and the Swiss Mother and Child HIV Cohort (2023). Migrating a Well-Established Longitudinal Cohort Database From Oracle SQL to Research Electronic Data Entry (REDCap): Data Management Research and Design Study. JMIR Formative Research, 7:e44567.

Belavgeni, Alexia; Maremonti, Francesca; Tonnus, Wulf; Stadtmüller, Marlena; Gavali, Shubhangi; Mallais, Melodie; Flade, Karolin; Brucker, Anne; Becker, Jorunn Naila; Beer, Kristina; Tmava, Mirela; Stumpf, Julian; Gembardt, Florian; Hugo, Christian; Giacca, Mauro; Hale, Benjamin G; Perakakis, Nikolaos; Sha, Wei; Pratt, Derek A; Schally, Andrew V; Bornstein, Stefan R; Linkermann, Andreas (2023). vPIF-1 is an insulin-like antiferroptotic viral peptide. Proceedings of the National Academy of Sciences of the United States of America, 120(21):e2300320120.

Schreiber, Peter W; Scheier, Thomas; Wolfensberger, Aline; Saleschus, Dirk; Vazquez, Miriam; Kouyos, Roger; Zingg, Walter (2023). Parallel dynamics in the yield of universal SARS-CoV-2 admission screening and population incidence. Scientific Reports, 13(1):7296.

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Surial, Bernard; Ramírez Mena, Adrià; Roumet, Marie; Limacher, Andreas; Smit, Colette; Leleux, Olivier; Mocroft, Amanda; van der Valk, Marc; Bonnet, Fabrice; Peters, Lars; Rockstroh, Jürgen K; Günthard, Huldrych F; Berzigotti, Annalisa; Rauch, Andri; Wandeler, Gilles (2023). External validation of the PAGE-B score for HCC risk prediction in people living with HIV/HBV coinfection. Journal of Hepatology, 78(5):947-957.

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Hale, Benjamin G (2023). Autoantibodies targeting type I interferons: Prevalence, mechanisms of induction, and association with viral disease susceptibility. European Journal of Immunology, 53(6):e2250164.

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Balakrishna, Suraj; Loosli, Tom; Zaheri, Maryam; Frischknecht, Paul; Huber, Michael; Kusejko, Katharina; Yerly, Sabine; Leuzinger, Karoline; Perreau, Matthieu; Ramette, Alban; Wymant, Chris; Fraser, Christophe; Kellam, Paul; Gall, Astrid; Hirsch, Hans H; Stoeckle, Marcel; Rauch, Andri; Cavassini, Matthias; Bernasconi, Enos; Notter, Julia; Calmy, Alexandra; Günthard, Huldrych F; Metzner, Karin J; Kouyos, Roger D (2023). Frequency matters: comparison of drug resistance mutation detection by Sanger and next-generation sequencing in HIV-1. Journal of Antimicrobial Chemotherapy, 78(3):656-664.

Hofmann, Eveline; Surial, Bernard; Boillat-Blanco, Noémie; Günthard, Huldrych F; Stöckle, Marcel; Bernasconi, Enos; Schmid, Patrick; Calmy, Alexandra; Suter-Riniker, Franziska; Rauch, Andri; Wandeler, Gilles; Béguelin, Charles; SHCS (2023). HBV replication during tenofovir therapy is frequent in HIV/HBV-coinfection. Clinical Infectious Diseases, 76(4):730-733.

Labarile, Marco; Loosli, Tom; Zeeb, Marius; Kusejko, Katharina; Huber, Michael; Hirsch, Hans H; Perreau, Matthieu; Ramette, Alban; Yerly, Sabine; Cavassini, Matthias; Battegay, Manuel; Rauch, Andri; Calmy, Alexandra; Notter, Julia; Bernasconi, Enos; Fux, Christoph; Günthard, Huldrych F; Pasin, Chloé; Kouyos, Roger D; Swiss HIV Cohort Study (2023). Quantifying and predicting ongoing Human Immunodeficiency Virus Type 1 (HIV-1) transmission dynamics in Switzerland using a distance-based clustering approach. Journal of Infectious Diseases, 227(4):554-564.

Hamusonde, Kalongo; Nicca, Dunja; Günthard, Huldrych F; Stöckle, Marcel; Darling, Katharine Ea; Calmy, Alexandra; Bernasconi, Enos; Haerry, David; Schmid, Patrick; Kouyos, Roger D; Rauch, Andri; Salazar-Vizcaya, Luisa; Swiss HIV Cohort Study (2023). Triggers of change in sexual behavior among people with HIV: The Swiss U = U statement and Covid-19 compared. Journal of Infectious Diseases, 227(3):407-411.

Mauri, Fabio; Cottler-Casanova, Sara; Cavassini, Matthias; Stoeckle, Marcel; Wandeler, Gilles; Schmid, Patrick; Braun, Dominique L; Scherrer, Alexandra; Bernasconi, Enos; Calmy, Alexandra; Abdulcadir, Jasmine (2023). Female Genital Mutilation/Cutting in the Swiss HIV Cohort Study: A Cross-Sectional Study. Journal of Immigrant and Minority Health, 25(1):136-141.

Nadeau, Sarah A; Vaughan, Timothy G; Beckmann, Christiane; Topolsky, Ivan; Chen, Chaoran; Hodcroft, Emma; Schär, Tobias; Nissen, Ina; Santacroce, Natascha; Burcklen, Elodie; Ferreira, Pedro; Jablonski, Kim Philipp; Posada-Céspedes, Susana; Capece, Vincenzo; Seidel, Sophie; Santamaria de Souza, Noemi; Martinez-Gomez, Julia M; Cheng, Phil; Bosshard, Philipp P; Levesque, Mitchell P; Kufner, Verena; Schmutz, Stefan; Zaheri, Maryam; Huber, Michael; Trkola, Alexandra; Cordey, Samuel; Laubscher, Florian; Gonçalves, Ana Rita; Aeby, Sébastien; Pillonel, Trestan; et al (2023). Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data. Science Translational Medicine, 15(680):eabn7979.

Luo, Beiping; Schaub, Aline; Glas, Irina; Klein, Liviana K; David, Shannon C; Bluvshtein, Nir; Violaki, Kalliopi; Motos, Ghislain; Pohl, Marie O; Hugentobler, Walter; Nenes, Athanasios; Krieger, Ulrich K; Stertz, Silke; Peter, Thomas; Kohn, Tamar (2023). Expiratory Aerosol pH: The Overlooked Driver of Airborne Virus Inactivation. Environmental Science & Technology, 57(1):486-497.

Béguelin, Charles; Atkinson, Andrew; Boyd, Anders; Falconer, Karolin; Kirkby, Nikolai; Suter-Riniker, Franziska; Günthard, Huldrych F; Rockstroh, Jürgen K; Mocroft, Amanda; Rauch, Andri; Peters, Lars; Wandeler, Gilles (2023). Hepatitis delta infection among persons living with HIV in Europe. Liver International, 43(4):819-828.

Braendli, Tobias; Schindler, Valeria; Braun, Dominique Laurent; Murray, Fritz Ruprecht; Hente, Juliane Marie; Pohl, Daniel (2023). Clarithromycin-based Helicobacter pylori eradication therapy is not associated with higher treatment failure compared with non-clarithromycin-based regimens in a tertiary referral hospital in Switzerland. Swiss Medical Weekly, 153(1):40024.

Gandhi, Rajesh T; Bedimo, Roger; Hoy, Jennifer F; Landovitz, Raphael J; Smith, Davey M; Eaton, Ellen F; Lehmann, Clara; Springer, Sandra A; Sax, Paul E; Thompson, Melanie A; Benson, Constance A; Buchbinder, Susan P; del Rio, Carlos; Eron, Joseph J; Günthard, Huldrych F; Molina, Jean-Michel; Jacobsen, Donna M; Saag, Michael S (2023). Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2022 Recommendations of the International Antiviral Society-USA Panel. JAMA : the Journal of the American Medical Association, 329(1):63-84.

Jaschinski, Nadine; Greenberg, Lauren; Neesgaard, Bastian; et al; Günthard, Huldrych F (2023). Recent abacavir use and incident cardiovascular disease in contemporary treated people living with HIV. AIDS, 37(3):467-475.

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Bick, Alexander G; Popadin, Konstantin; Thorball, Christian W; Uddin, Md Mesbah; Zanni, Markella V; Yu, Bing; Cavassini, Matthias; Rauch, Andri; Tarr, Philip; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F; et al (2022). Author Correction: Increased prevalence of clonal hematopoiesis of indeterminate potential amongst people living with HIV. Scientific Reports, 12(1):11638.

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Riebensahm, Carlotta; Berzigotti, Annalisa; Surial, Bernard; Günthard, Huldrych F; Tarr, Philip E; Furrer, Hansjakob; Rauch, Andri; Wandeler, Gilles; Swiss HIV Cohort Study (2022). Factors Associated With Liver Steatosis in People With Human Immunodeficiency Virus on Contemporary Antiretroviral Therapy. Open Forum Infectious Diseases, 9(11):ofac538.

Andresen, Sara; Balakrishna, Suraj; Mugglin, Catrina; Schmidt, Axel J; Braun, Dominique L; Marzel, Alex; Doco Lecompte, Thanh; Darling, Katharine Ea; Roth, Jan A; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F; Rauch, Andri; Kouyos, Roger D; Salazar-Vizcaya, Luisa; Swiss HIV Cohort Study (2022). Unsupervised machine learning predicts future sexual behaviour and sexually transmitted infections among HIV-positive men who have sex with men. PLoS Computational Biology, 18(10):e1010559.

Schmiedeberg, Kristin; Abela, Irene A; Pikor, Natalia Barbara; Vuilleumier, Nicolas; Schwarzmueller, Magdalena; Epp, Selina; Pagano, Sabrina; Grabherr, Sarah; Patterson, Angelica Brooke; Nussberger, Madalina; Trkola, Alexandra; Ludewig, Burkhard; von Kempis, Johannes; Rubbert-Roth, Andrea (2022). Postvaccination anti-S IgG levels predict anti-SARS-CoV-2 neutralising activity over 24 weeks in patients with RA. RMD Open, 8(2):e002575.

Isfordink, Cas; Boyd, Anders; Mocroft, Amanda; Kusejko, Katharina; Smit, Colette; de Wit, Stephane; Mahungu, Tabitha; Falconer, Karolin; Wandeler, Gilles; Cavassini, Matthias; Stöckle, Marcel; Schinkel, Janke; Rauch, Andri; Peters, Lars; van der Valk, Marc (2022). Low Risk of Failing Direct-Acting Antivirals in People With Human Immunodeficiency Virus/Hepatitis C Virus From Sub-Saharan Africa or Southeastern Asia: A European Cross-Sectional Study. Open Forum Infectious Diseases, 9(10):ofac508.

Wensing, Annemarie M; Calvez, Vincent; Ceccherini-Silberstein, Francesca; Charpentier, Charlotte; Günthard, Huldrych F; Paredes, Roger; Shafer, Robert W; Richman, Douglas D (2022). 2022 update of the drug resistance mutations in HIV-1. Topics in Antiviral Medicine, 30(4):559-574.

Chaudron, Sandra E; Leemann, Christine; Kusejko, Katharina; Nguyen, Huyen; Tschumi, Nadine; Marzel, Alex; Huber, Michael; Böni, Jürg; Perreau, Matthieu; Klimkait, Thomas; Yerly, Sabine; Ramette, Alban; Hirsch, Hans H; Rauch, Andri; Calmy, Alexandra; Vernazza, Pietro; Bernasconi, Enos; Cavassini, Matthias; Metzner, Karin J; Kouyos, Roger D; Günthard, Huldrych F (2022). A Systematic Molecular Epidemiology Screen Reveals Numerous Human Immunodeficiency Virus (HIV) Type 1 Superinfections in the Swiss HIV Cohort Study. Journal of Infectious Diseases, 226(7):1256-1266.

Klein, Liviana K; Luo, Beiping; Bluvshtein, Nir; Krieger, Ulrich K; Schaub, Aline; Glas, Irina; David, Shannon C; Violaki, Kalliopi; Motos, Ghislain; Pohl, Marie O; Hugentobler, Walter; Nenes, Athanasios; Stertz, Silke; Peter, Thomas; Kohn, Tamar (2022). Expiratory aerosol pH is determined by indoor room trace gases and particle size. Proceedings of the National Academy of Sciences of the United States of America, 119(39):e2212140119.

Byonanebye, Dathan M; Polizzotto, Mark N; Neesgaard, Bastian; Sarcletti, Mario; Matulionyte, Raimonda; Braun, Dominique L; et al (2022). Incidence of hypertension in people with HIV who are treated with integrase inhibitors versus other antiretroviral regimens in the RESPOND cohort consortium. HIV Medicine, 23(8):895-910.

Rindler, Audrey E; Kusejko, Katharina; Kuster, Herbert; Neumann, Kathrin; Leemann, Christine; Zeeb, Marius; Chaudron, Sandra E; Braun, Dominique L; Kouyos, Roger D; Metzner, Karin J; Günthard, Huldrych F (2022). The Interplay Between Replication Capacity of HIV-1 and Surrogate Markers of Disease. Journal of Infectious Diseases, 226(6):1057-1068.

Hepprich, Matthias; Mudry, Jonathan M; Gregoriano, Claudia; Jornayvaz, Francois R; Carballo, Sebastian; Wojtusciszyn, Anne; Bart, Pierre-Alexandre; Chiche, Jean-Daniel; Fischli, Stefan; Baumgartner, Thomas; Cavelti-Weder, Claudia; Braun, Dominique L; Günthard, Huldrych F; Beuschlein, Felix; Conen, Anna; West, Emily; Isenring, Egon; Zechmann, Stefan; Bucklar, Gabriela; Aubry, Yoann; Dey, Ludovic; Müller, Beat; Hunziker, Patrick; Schütz, Philipp; Cattaneo, Marco; Donath, Marc Y (2022). Canakinumab in patients with COVID-19 and type 2 diabetes - A multicentre, randomised, double-blind, placebo-controlled trial. eClinicalMedicine, 53:101649.

Begré, Lorin; Béguelin, Charles; Boyd, Anders; Peters, Lars; Rockstroh, Jürgen; Günthard, Huldrych F; Bernasconi, Enos; Cavassini, Matthias; Lacombe, Karine; Mocroft, Amanda; Wandeler, Gilles; Rauch, Andri (2022). Long-term trends of alanine aminotransferase levels among persons living with human immunodeficiency virus/hepatitis B virus with and without hepatitis delta coinfection. Frontiers in Medicine, 9:988356.

Mair, Nina K; Hale, Benjamin G (2022). Ultra-Rare BRD9 Loss-of-Function Variants Limit the Antiviral Action of Interferon. Scientific Reports, 12(1):15360.

Inderbitzin, Anne; Loosli, Tom; Kouyos, Roger D; Metzner, Karin J (2022). Quantification of transgene expression in GSH AAVS1 with a novel CRISPR/Cas9-based approach reveals high transcriptional variation. Molecular Therapy - Methods & Clinical Development, 26:107-118.

Jakeman, Bernadette; Scherrer, Alexandra U; Darling, Katharine E A; Damas, Jose; Bieler-Aeschlimann, Melanie; Hasse, Barbara; Schlosser, Ladina; Hachfeld, Anna; Gutbrod, Klemens; Tarr, Philip E; Calmy, Alexandra; Assal, Frederic; Kunze, Ursula; Stoeckle, Marcel; Schmid, Patrick; Toller, Gianina; Rossi, Stefania; di Benedetto, Caroline; du Pasquier, Renaud; Cavassini, Matthias; Marzolini, Catia (2022). Anticholinergic and Sedative Medications Are Associated With Neurocognitive Performance of Well Treated People With Human Immunodeficiency Virus. Open Forum Infectious Diseases, 9(9):ofac457.

ACTIV-3/TICO Study Group; et al; Braun, Dominique L; Günthard, Huldrych F; Legenne, Philippe (2022). Efficacy and Safety of Ensovibep for Adults Hospitalized With COVID-19 : A Randomized Controlled Trial. Annals of Internal Medicine, 175(9):1266-1274.

Fernbach, Sonja; Hale, Benjamin G (2022). SARS-CoV-2 takes the bait: Exosomes as endogenous decoys. PLoS Biology, 20(9):e3001787.

Günther, Sira C; Martínez-Romero, Carles; Sempere Borau, Milagros; Pham, Christine T N; García-Sastre, Adolfo; Stertz, Silke (2022). Proteomic Identification of Potential Target Proteins of Cathepsin W for Its Development as a Drug Target for Influenza. Microbiology Spectrum, 10(4):e0092122.

Inderbitzin, Anne; Loosli, Tom; Opitz, Lennart; Rusert, Peter; Metzner, Karin J (2022). Transcriptome profiles of latently- and reactivated HIV-1 infected primary CD4+ T cells: A pooled data-analysis. Frontiers in Immunology, 13:915805.

Speich, Benjamin; Chammartin, Frédérique; Abela, Irene A; Amico, Patrizia; Stoeckle, Marcel P; Eichenberger, Anna L; Hasse, Barbara; Braun, Dominique L; Schuurmans, Macé M; Müller, Thomas F; Tamm, Michael; Audigé, Annette; Mueller, Nicolas J; Rauch, Andri; Günthard, Huldrych F; Koller, Michael T; Trkola, Alexandra; Briel, Matthias; Kusejko, Katharina; Bucher, Heiner C; et al; Schanz, Urs (2022). Antibody Response in Immunocompromised Patients After the Administration of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Vaccine BNT162b2 or mRNA-1273: A Randomized Controlled Trial. Clinical Infectious Diseases, 75(1):e585-e593.

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Andermatt, Rea; Bloemberg, Guido V; Ganter, Christoph C; Mueller, Nicolas J; Mueller, Antonia M S; Muellhaupt, Beat; Kielstein, Jan T; David, Sascha (2022). Elimination of Herpes Simplex Virus-2 and Epstein-Barr Virus With Seraph 100 Microbind Affinity Blood Filter and Therapeutic Plasma Exchange: An Explorative Study in a Patient With Acute Liver Failure. Critical Care Explorations, 4(8):e0745.

Nadeau, Sarah; Thorball, Christian W; Kouyos, Roger; Günthard, Huldrych F; Böni, Jürg; Yerly, Sabine; Perreau, Matthieu; Klimkait, Thomas; Rauch, Andri; Hirsch, Hans H; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Fellay, Jacques; Mitov, Venelin; Stadler, Tanja; Swiss HIV Cohort Study (SHCS) (2022). A Phylogeny-aware GWAS Framework to Correct for Heritable Pathogen Effects on Infectious Disease Traits. Molecular Biology and Evolution, 39(8):msac163.

Kusejko, Katharina; Tschumi, Nadine; Chaudron, Sandra E; Nguyen, Huyen; Battegay, Manuel; Bernasconi, Enos; Böni, Jürg; Huber, Michael; Calmy, Alexandra; Cavassini, Matthias; Egle, Alexander; Grabmeier-Pfistershammer, Katharina; Haas, Bernhard; Hirsch, Hans H; Klimkait, Thomas; Öllinger, Angela; Perreau, Matthieu; Ramette, Alban; Flury, Baharak Babouee; Sarcletti, Mario; Scherrer, Alexandra; Schmid, Patrick; Yerly, Sabine; Zangerle, Robert; Günthard, Huldrych F; Kouyos, Roger D (2022). Similar But Different: Integrated Phylogenetic Analysis of Austrian and Swiss HIV-1 Sequences Reveal Differences in Transmission Patterns of the Local HIV-1 Epidemics. Journal of Acquired Immune Deficiency Syndromes, 90(4):e4-e12.

Hauser, Anthony; Goldstein, Fardo; Reichmuth, Martina L; Kouyos, Roger D; Wandeler, Gilles; Egger, Matthias; Riou, Julien (2022). Acquired HIV drug resistance mutations on first-line antiretroviral therapy in Southern Africa: Systematic review and Bayesian evidence synthesis. Journal of Clinical Epidemiology, 148:135-145.

Thoueille, Paul; Alves Saldanha, Susana; Schaller, Fabian; Munting, Aline; Cavassini, Matthias; Braun, Dominique; Günthard, Huldrych F; Kusejko, Katharina; Surial, Bernard; Furrer, Hansjakob; Rauch, Andri; Ustero, Pilar; Calmy, Alexandra; Stoeckle, Marcel; Battegay, Manuel; Marzolini, Catia; Andre, Pascal; Guidi, Monia; Buclin, Thierry; Decosterd, Laurent A; Swiss HIV Cohort Study (2022). Real-Life Therapeutic Concentration Monitoring of Long-Acting Cabotegravir and Rilpivirine: Preliminary Results of an Ongoing Prospective Observational Study in Switzerland. Pharmaceutics, 14(8):1588.

Kusejko, Katharina; Chammartin, Frédérique; Smith, Daniel; Odermatt, Marcel; Schuhmacher, Julian; Koller, Michael; Günthard, Huldrych F; Briel, Matthias; Bucher, Heiner C; Speich, Benjamin (2022). Developing and testing a Corona VaccinE tRiAL pLatform (COVERALL) to study Covid-19 vaccine response in immunocompromised patients. BMC Infectious Diseases, 22:654.

Hufsky, Franziska; Abecasis, Ana; Agudelo-Romero, Patricia; Bletsa, Magda; Brown, Katherine; Claus, Claudia; Deinhardt-Emmer, Stefanie; Deng, Li; Friedel, Caroline C; Gismondi, María Inés; Kostaki, Evangelia Georgia; Kühnert, Denise; Kulkarni-Kale, Urmila; Metzner, Karin J; Meyer, Irmtraud M; Miozzi, Laura; Nishimura, Luca; Paraskevopoulou, Sofia; Pérez-Cataluña, Alba; Rahlff, Janina; Thomson, Emma; Tumescheit, Charlotte; van der Hoek, Lia; Van Espen, Lore; Vandamme, Anne-Mieke; Zaheri, Maryam; Zuckerman, Neta; Marz, Manja (2022). Women in the European Virus Bioinformatics Center. Viruses, 14(7):1522.

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Börold, Jacob; Eletto, Davide; Busnadiego, Idoia; Mair, Nina K; Moritz, Eva; Schiefer, Samira; Schmidt, Nora; Petric, Philipp P; Wong, W Wei-Lynn; Schwemmle, Martin; Hale, Benjamin G (2021). BRD9 is a druggable component of interferon-stimulated gene expression and antiviral activity. EMBO Reports, 22(10):e52823.

Greenberg, Lauren; Ryom, Lene; Neesgaard, Bastian; Wandeler, Gilles; Staub, Therese; Gisinger, Martin; Skoll, Michael; Günthard, Huldrych F; et al (2021). Clinical outcomes of two-drug regimens vs. three-drug regimens in antiretroviral treatment-experienced people living with HIV. Clinical Infectious Diseases, 73(7):e2323-e2333.

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Engel, Tanja; Raffenberg, Marieke; Schoepf, Isabella C; Kootstra, Neeltje A; Reiss, Peter; Thorball, Christian W; Hasse, Barbara; Hirzel, Cédric; Wissel, Kerstin; Roth, Jan A; Bernasconi, Enos; Darling, Katharine E A; Calmy, Alexandra; Fellay, Jacques; Kouyos, Roger D; Günthard, Huldrych F; Ledergerber, Bruno; Tarr, Philip E (2021). Telomere Length, Traditional Risk Factors, HIV-related Factors and Coronary Artery Disease Events in Swiss Persons Living with HIV. Clinical Infectious Diseases, 73(7):e2070-e2076.

Wolters, Femke; Grünberg, Maria; Huber, Michael; Kessler, Harald H; Prüller, Florian; Saleh, Lanja; Fébreau, Christine; Rahamat-Langendoen, Janette; Thibault, Vincent; Melchers, Willem J G (2021). European multicenter evaluation of Xpert® Xpress SARS-CoV-2/Flu/RSV test. Journal of Medical Virology, 93(10):5798-5804.

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Ludersdorfer, Thomas. Rack1 is required for interferon induced expression of secondary response genes and influenza a virus entry. 2012, University of Zurich, Faculty of Science.

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Abela, Irene A. The role of neutralizing antibodies in inhibition of cell-cell transmission. 2012, University of Zurich, Faculty of Science.

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Mekker, A. Cytomegalovirus infection and immune senescence: an example of collateral damage. 2011, University of Zurich, Faculty of Science.

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Althaus, Claudia. Interplay between HIV-1 transcription and the pathways of intracellular innate defense. 2011, University of Zurich, Faculty of Science.

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Wisskirchen, Christian. The cellular RNA helicase UAP56 links influenza A virus replication and the antiviral activity of Mx-proteins. 2011, University of Zurich, Faculty of Science.

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Ghielmetti, M; Millard, A L; Haeberli, L; Bossart, W; Seebach, J D; Schneider, M K J; Mueller, N J (2009). Human CMV infection of porcine endothelial cells increases adhesion receptor expression and human leukocyte recruitment. Transplantation, 87(12):1792-1800.

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Daneel, S; Schüpbach, J; Gebhardt, M; Werner, M; Staub, R; Vernazza, P (2008). A prospective evaluation of the feasibility and utility of additional tools to obtain information from recently diagnosed HIV infected patients. Swiss Medical Weekly, 138(31-32):453-458.

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Schüpbach, Jörg (2008). HIV/AIDS: Erfolge, Misserfolge und neue Ziele der Forschung. BioFokus, 18(77):1-11.

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Sendi, P; Günthard, H F; Simcock, M; Ledergerber, B; Schüpbach, J; Battegay, M (2007). Cost-Effectiveness of Genotypic Antiretroviral Resistance Testing in HIV-Infected Patients with Treatment Failure. PLoS ONE, 2(1):e173.

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Böni, J; Schüpbach, J; Rickenbach, M (2006). Rabbit retrotransposon sequences undetectable in blood donors and lymphoma patients of the Swiss HIV Cohort Study. AIDS Research and Human Retroviruses, 22(6):499-500.

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Simcock, M; Sendi, P; Ledergerber, B; Keller, T; Schüpbach, J; Battegay, M; Günthard, H F (2006). A longitudinal analysis of healthcare costs after treatment optimization following genotypic antiretroviral resistance testing: does resistance testing pay off? Antiviral Therapy, 11(3):305-314.

Jennings, Cheryl; Fiscus, Susan A; Crowe, Suzanne M; Danilovic, Aleksandra D; Morack, Ralph J; Scianna, Salvatore; Cachafeiro, Ada; Brambilla, Donald J; Schüpbach, Jörg; Stevens, Wendy; Respess, Richard; Varnier, Oliviero E; Corrigan, Gary E; Gronowitz, J Simon; Ussery, Michael A; Bremer, James W (2005). Comparison of two human immunodeficiency virus (HIV) RNA surrogate assays to the standard HIV RNA assay. Journal of Clinical Microbiology, 43(12):5950-5956.

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Aceto, L; Karrer, U; Grube, Ch; Oberholzer, R; Hasse, B; Presterl, E; Böni, J; Kuster, H; Trkola, A; Weber, R; Günthard, H F (2005). Die akute HIV-1-Infektion in Zürich: 2002–2004. Praxis, 94(32):1199-1205.

Joos, B; Trkola, A; Fischer, M; Kuster, H; Rusert, P; Leemann, C; Böni, J; Oxenius, Annette; Price, D A; Phillips, R E; Wong, J K; Hirschel, B; Weber, R; Günthard, Huldrych F (2005). Low human immunodeficiency virus envelope diversity correlates with low in vitro replication capacity and predicts spontaneous control of plasma viremia after treatment interruptions. Journal of Virology, 79(14):9026-9037.