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Weber, Mikiyo; Fuchs, Daniel; Pöschel, Amiskwia; Beebe, Erin; Garajova, Zuzana; Jarosch, Armin; Kunz, Laura; Wolski, Witold; Opitz, Lennart; Guscetti, Franco; Nolff, Mirja C; Markkanen, Enni (2025). Transcriptomic and proteomic profiling identifies feline fibrosarcoma as clinically amenable model for aggressive sarcoma subtypes. Neoplasia, 60:101104.
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Lkharrazi, Anouk; Tobler, Kurt; Marti, Sara; Bratus-Neuenschwander, Anna; Vogt, Bernd; Fraefel, Cornel (2024). AAV2 can replicate its DNA by a rolling hairpin or rolling circle mechanism, depending on the helper virus. Journal of Virology, 98(11):e0128224.
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Leugger, Flurin; Schmidlin, Michel; Lüthi, Martina; Kontarakis, Zacharias; Pellissier, Loïc (2024). Scanning amplicons with CRISPR‐Dx detects endangered amphibians in environmental DNA. Molecular Ecology Resources, 24(8):e14009.
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Varliero, Gilda; Frossard, Aline; Qi, Weihong; Stierli, Beat; Frey, Beat (2024). Metatranscriptomic responses of High-Arctic tundra soil microbiomes to carbon input. Soil Biology and Biochemistry, 197:109539.
Feng, Maomao; Robinson, Serina; Qi, Weihong; Edwards, Arwyn; Stierli, Beat; van der Heijden, Marcel; Frey, Beat; Varliero, Gilda (2024). Microbial genetic potential differs among cryospheric habitats of the Damma glacier. Microbial Genomics, 10(10):001301.
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Dimitriou, Florentia; Cheng, Phil F; Saltari, Annalisa; Schaper-Gerhardt, Katrin; Staeger, Ramon; Haunerdinger, Veronika; Sella, Federica; Tastanova, Aizhan; Urban, Christian; Dettwiler, Susanne; Mihic-Probst, Daniela; Matter, Christian M; Michielin, Olivier; Gutzmer, Ralf; Long, Georgina V; Becher, Burkhard; Levesque, Mitchell P; Dummer, Reinhard (2024). A targetable type III immune response with increase of IL-17A expressing CD4$^{+}$ T cells is associated with immunotherapy-induced toxicity in melanoma. Nature Cancer, 5(9):1390-1408.
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Beltrao, Pedro; Van Den Bossche, Tim; Gabriels, Ralf; Holstein, Tanja; Kockmann, Tobias; Nameni, Alireza; Panse, Christian; Schlapbach, Ralph; Lautenbacher, Ludwig; Mattanovich, Matthias; Nesvizhskii, Alexey; Van Puyvelde, Bart; Scheid, Jonas; Schwämmle, Veit; Strauss, Maximilian; Susmelj, Anna Klimovskaia; The, Matthew; Webel, Henry; Wilhelm, Mathias; Winkelhardt, Dirk; Wolski, Witold Eryk; Xi, Muyao (2024). Proceedings of the EuBIC-MS developers meeting 2023. Journal of Proteomics, 305:105246.
Müller, Luise; Hoffmann, Anne; Bernhart, Stephan H; Ghosh, Adhideb; Zhong, Jiawei; Hagemann, Tobias; Sun, Wenfei; Dong, Hua; Noé, Falko; Wolfrum, Christian; Dietrich, Arne; Stumvoll, Michael; Massier, Lucas; Blüher, Matthias; Kovacs, Peter; Chakaroun, Rima; Keller, Mariana (2024). Blood methylation pattern reflects epigenetic remodelling in adipose tissue after bariatric surgery. EBioMedicine, 106:105242.
Mietz, Juliane; Kaulfuss, Meike; Egli, Lukas; Opitz, Lennart; Münz, Christian; Chijioke, Obinna (2024). Human effector CD8+ T cells with an activated and exhausted-like phenotype control tumour growth in vivo in a humanized tumour model. EBioMedicine, 106:105240.
Lorenzini, Tiziana; Faigle, Wolfgang; Ruder, Josefine; Docampo, María José; Opitz, Lennart; Martin, Roland (2024). Alterations of Thymus-Derived Tregs in Multiple Sclerosis. Neurology: Neuroimmunology and Neuroinflammation, 11(4):e200251.
Caldi Gomes, Lucas; Hänzelmann, Sonja; Hausmann, Fabian; Khatri, Robin; Oller, Sergio; Parvaz, Mojan; Tzeplaeff, Laura; Pasetto, Laura; Gebelin, Marie; Ebbing, Melanie; Holzapfel, Constantin; Columbro, Stefano Fabrizio; Scozzari, Serena; Knöferle, Johanna; Cordts, Isabell; Demleitner, Antonia F; Deschauer, Marcus; Dufke, Claudia; Sturm, Marc; Zhou, Qihui; Zelina, Pavol; Sudria-Lopez, Emma; Haack, Tobias B; Streb, Sebastian; Kuzma-Kozakiewicz, Magdalena; Edbauer, Dieter; Pasterkamp, R Jeroen; Laczko, Endre; Rehrauer, Hubert; Schlapbach, Ralph; et al (2024). Multiomic ALS signatures highlight subclusters and sex differences suggesting the MAPK pathway as therapeutic target. Nature Communications, 15(1):4893.
Mengis, Tamara; Zajac, Natalia; Bernhard, Laura; Heggli, Irina; Herger, Nick; Devan, Jan; Marcus, Roy; Brunner, Florian; Laux, Christoph J; Farshad, Mazda; Distler, Oliver; Dudli, Stefan (2024). Intervertebral disc microbiome in Modic changes: Lack of result replication underscores the need for a consensus in low-biomass microbiome analysis. JOR Spine, 7(2):e1330.
Lin, Chia-wei; Canonica, Fabia; Wüthrich, Simone; Fettelschoss-Gabriel, Antonia; Schlapbach, Ralph; Nanni, Paolo (2024). m-nitrobenzyl alcohol supercharging reagent enhances the chromatographic separation and the charging of disulfide bond linked and His-tag peptides. Journal of Chromatography. A, 1722:464828.
Oscarsson, Jan; Bao, Kai; Shiratsuchi, Akiko; Grossmann, Jonas; Wolski, Witold; Aung, Kyaw Min; Lindholm, Mark; Johansson, Anders; Mowsumi, Ferdousi Rahman; Wai, Sun Nyunt; Belibasakis, Georgios N; Bostanci, Nagihan (2024). Bacterial symbionts in oral niche use type VI secretion nanomachinery for fitness increase against pathobionts. iScience, 27(5):109650.
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Frey, Beat; Aiesi, Margherita; Rast, Basil M; Rüthi, Joel; Julmi, Jérôme; Stierli, Beat; Qi, Weihong; Brunner, Ivano (2024). Searching for new plastic-degrading enzymes from the plastisphere of alpine soils using a metagenomic mining approach. PLoS ONE, 19(4):e0300503.
Wieboldt, Ronja; Sandholzer, Michael; Carlini, Emanuele; Lin, Chia-Wei; Börsch, Anastasiya; Zingg, Andreas; Lardinois, Didier; Herzig, Petra; Don, Leyla; Zippelius, Alfred; Läubli, Heinz; Mantuano, Natalia Rodrigues (2024). Engagement of sialylated glycans with Siglec receptors on suppressive myeloid cells inhibits anticancer immunity via CCL2. Cellular & Molecular Immunology, 21(5):495-509.
Dewal, Revati S; Yang, Felix T; Baer, Lisa A; Vidal, Pablo; Hernandez-Saavedra, Diego; Seculov, Nickolai P; Ghosh, Adhideb; Noé, Falko; Togliatti, Olivia; Hughes, Lexis; DeBari, Megan K; West, Michael D; Soroko, Richard; Sternberg, Hal; Malik, Nafees N; Puchulu-Campanella, Estella; Wang, Huabao; Yan, Pearlly; Wolfrum, Christian; Abbott, Rosalyn D; Stanford, Kristin I (2024). Transplantation of committed pre-adipocytes from brown adipose tissue improves whole-body glucose homeostasis. iScience, 27(2):108927.
Akshay, Akshay; Gheinani, Ali Hashemi; Besic, Mustafa; Braga, Sophie; Uldry, Anne-Christine; Heller, Manfred; Rehrauer, Hubert; Fournier, Catharine Aquino; Burkhard, Fiona C; Monastyrskaya, Katia (2024). De-obstruction of bladder outlet in humans reverses organ remodelling by normalizing the expression of key transcription factors. BMC Urology, 24(1):33.
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Kim, Inseon; Lee, Seunghun S; Ghosh, Adhideb; Ferguson, Stephen J; Bar‐Nur, Ori (2024). A Self‐Renewing Biomimetic Skeletal Muscle Construct Engineered using Induced Myogenic Progenitor Cells. Advanced Functional Materials, 34(1):2300571.
Chatterjee, Madhurima; Roschitzki, Bernd; Grossmann, Jonas; Rathinam, Maniraj; Kunz, Laura; Wolski, Witold; Panse, Christian; Yadav, Jyoti; Schlapbach, Ralph; Rao, Uma; Sreevathsa, Rohini (2024). Developmental stage-specific proteome analysis of the legume pod borer Maruca vitrata provides insights on relevant proteins. International Journal of Biological Macromolecules, 254(Pt 1):127666.
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Feng, Maomao; Varliero, Gilda; Qi, Weihong; Stierli, Beat; Edwards, Arwyn; Robinson, Serina; van der Heijden, Marcel G A; Frey, Beat (2023). Microbial dynamics in soils of the Damma glacier forefield show succession in the functional genetic potential. Environmental Microbiology, 25(12):3116-3138.
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He, Jiazhuo; Nascakova, Zuzana; Leary, Peter; Papa, Giovanni; Valenta, Tomas; Basler, Konrad; Müller, Anne (2023). Inactivation of the tumor suppressor gene Apc synergizes with H. pylori to induce DNA damage in murine gastric stem and progenitor cells. Science Advances, 9(46):eadh0322.
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Qabrati, Xhem; Kim, Inseon; Ghosh, Adhideb; Bundschuh, Nicola; Noé, Falko; Palmer, Andrew S; Bar-Nur, Ori (2023). Transgene-free direct conversion of murine fibroblasts into functional muscle stem cells. npj Regenerative Medicine, 8(1):43.
Othman, Alaa; Liu, Mingxia; Bode, Heiko; Boudyguina, Elena; von Eckardstein, Arnold; Parks, John S; Hornemann, Thorsten (2023). Hepatocyte ABCA1 deficiency is associated with reduced HDL sphingolipids. Frontiers in Physiology, 14:1208719.
Ojosnegros, Sara; Alvarez, José Manuel; Grossmann, Jonas; Gagliardini, Valeria; Quintanilla, Luis G; Grossniklaus, Ueli; Fernández, Helena (2023). Proteome and Interactome Linked to Metabolism, Genetic Information Processing, and Abiotic Stress in Gametophytes of Two Woodferns. International Journal of Molecular Sciences, 24(15):online.
Balic, Anamaria; Perver, Dilara; Pagella, Pierfrancesco; Rehrauer, Hubert; Stadlinger, Bernd; Moor, Andreas E; Vogel, Viola; Mitsiadis, Thimios A (2023). Extracellular matrix remodelling in dental pulp tissue of carious human teeth through the prism of single-cell RNA sequencing. International Journal of Oral Science, 15(1):30.
Yeh, Yu-Te; Sona, Chandan; Yan, Xin; Li, Yunxiao; Pathak, Adrija; McDermott, Mark I; Xie, Zhigang; Liu, Liangwen; Arunagiri, Anoop; Wang, Yuting; Cazenave-Gassiot, Amaury; Ghosh, Adhideb; von Meyenn, Ferdinand; Kumarasamy, Sivarajan; Najjar, Sonia M; Jia, Shiqi; Wenk, Markus R; Traynor-Kaplan, Alexis; Arvan, Peter; Barg, Sebastian; Bankaitis, Vytas A; Poy, Matthew N (2023). Restoration of PITPNA in Type 2 diabetic human islets reverses pancreatic beta-cell dysfunction. Nature Communications, 14(1):4250.
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Ettlin, Julia; Bauer, Alina; Opitz, Lennart; Malbon, Alexandra; Markkanen, Enni (2023). Deciphering Stromal Changes between Metastatic and Non-metastatic Canine Mammary Carcinomas. Journal of Mammary Gland Biology and Neoplasia, 28(1):14.
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Asadollahi, Reza; Delvendahl, Igor; Muff, Rebecca; Tan, Ge; Rodríguez, Daymé González; Turan, Soeren; Russo, Martina; Oneda, Beatrice; Joset, Pascal; Boonsawat, Paranchai; Masood, Rahim; Mocera, Martina; Ivanovski, Ivan; Baumer Wolz, Alessandra; Bachmann-Gagescu, Ruxandra; Schlapbach, Ralph; Rehrauer, Hubert; Steindl, Katharina; Begemann, Anaïs; Reis, André; Winkler, Jürgen; Winner, Beate; Müller, Martin; Rauch, Anita (2023). Pathogenic SCN2A variants cause early-stage dysfunction in patient-derived neurons. Human Molecular Genetics, 32(13):2192-2204.
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Sidi, R; Pasello, G; Opitz, I; Soltermann, A; Tutic, M; Rehrauer, H; Weder, W; Stahel, R A; Felley-Bosco, E (2011). Induction of senescence markers after neo-adjuvant chemotherapy of malignant pleural mesothelioma and association with clinical outcome: an exploratory analysis. European Journal of Cancer, 47(2):326-332.
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Bratuś, A; Neuenschwander, S; Piestrzyńska-Kajtoch, A; Świtoński, M; Klukowska-Rötzler, J; Słota, E (2011). Polymorphisms in DMRT1 coding and promoter regions are probably not causative for swine sex reversal (XX, SRY-negative) syndrome. Annals of Animal Science, 11(1):17-26.
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Zeisberger, S M; Zoller, S; Riegel, M; Chen, S; Krenning, G; Harmsen, M C; Sachinidis, A; Zisch, A H (2010). Optimization of the culturing conditions of human umbilical cord blood-derived endothelial colony-forming cells under xeno-free conditions applying a transcriptomic approach. Genes to Cells, 15(7):671-687.
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Banu, L D; Conrads, G; Rehrauer, H; Hussain, H; Allan, E; van der Ploeg, J R (2010). The Streptococcus mutans serine/threonine kinase, PknB, regulates competence development, bacteriocin production, and cell wall metabolism. Infection and Immunity, 78(5):2209-2220.
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Sonda, S; Morf, L; Bottova, I; Baetschmann, H; Rehrauer, H; Caflisch, A; Hakimi, M-A; Hehl, A B (2010). Epigenetic mechanisms regulate stage differentiation in the minimized protozoan Giardia lamblia. Molecular Microbiology, 76(1):48-67.
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Bremer, J; O'Connor, T; Tiberi, C; Rehrauer, H; Weis, J; Aguzzi, A (2010). Ablation of Dicer from murine Schwann cells increases their proliferation while blocking myelination. PLoS ONE, 5(8):e12450.
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Worthington, J; Bertani, M; Chan, H L; Gerrits, B; Timms, J F (2010). Transcriptional profiling of ErbB signalling in mammary luminal epithelial cells - interplay of ErbB and IGF1 signalling through IGFBP3 regulation. BMC Cancer, 10:490.
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Hodel, E M; Ley, S D; Qi, W; Ariey, F; Genton, B; Beck, H P (2009). A microarray-based system for the simultaneous analysis of single nucleotide polymorphisms in human genes involved in the metabolism of anti-malarial drugs. Malaria Journal, 8:285.
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