Items where Subject is "07 Faculty of Science > Institute of Molecular Life Sciences"

Vintschger, Ella; Kraemer, Dennis; Joset, Pascal; Horn, Anselm H C; Rauch, Anita; Sticht, Heinrich; Bachmann-Gagescu, Ruxandra (2023). Challenges for the implementation of next generation sequencing-based expanded carrier screening: Lessons learned from the ciliopathies. European Journal of Human Genetics, 31(8):953-961.

Alves, Victoria Cunha; Figueiro-Silva, Joana; Ferrer, Isidre; Carro, Eva (2023). Epigenetic silencing of OR and TAS2R genes expression in human orbitofrontal cortex at early stages of sporadic Alzheimer’s disease. Cellular and Molecular Life Sciences, 80(8):196.

Fan, Zheng; Ardicoglu, Raphaela; Batavia, Aashil A; Rust, Ruslan; von Ziegler, Lukas; Waag, Rebecca; Zhang, Jing; Desgeorges, Thibaut; Sturman, Oliver; Dang, Hairuo; Weber, Rebecca; Roszkowski, Martin; Moor, Andreas E; Schwab, Martin E; Germain, Pierre-Luc; Bohacek, Johannes; De Bock, Katrien (2023). The vascular gene Apold1 is dispensable for normal development but controls angiogenesis under pathological conditions. Angiogenesis, 26(3):385-407.

Vladimirov, Nikita; Voigt, Fabian F; Naert, Thomas; Araujo, Gabriela R; Cai, Ruiyao; Reuss, Anna Maria; Zhao, Shan; Schmid, Patricia; Hildebrand, Sven; Schaettin, Martina; Groos, Dominik; Mateos, José María; Bethge, Philipp; Yamamoto, Taiyo; Aerne, Valentino; Roebroeck, Alard; Ertürk, Ali; Aguzzi, Adriano; Ziegler, Urs; Stoeckli, Esther; Baudis, Laura; Lienkamp, Soeren S; Helmchen, Fritjof (2023). The Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for large cleared samples. www.biorxiv.org: BioRxiv.

Asadollahi, Reza; Delvendahl, Igor; Muff, Rebecca; Tan, Ge; Rodríguez, Daymé González; Turan, Soeren; Russo, Martina; Oneda, Beatrice; Joset, Pascal; Boonsawat, Paranchai; Masood, Rahim; Mocera, Martina; Ivanovski, Ivan; Baumer Wolz, Alessandra; Bachmann-Gagescu, Ruxandra; Schlapbach, Ralph; Rehrauer, Hubert; Steindl, Katharina; Begemann, Anaïs; Reis, André; Winkler, Jürgen; Winner, Beate; Müller, Martin; Rauch, Anita (2023). Pathogenic SCN2A variants cause early-stage dysfunction in patient-derived neurons. Human Molecular Genetics, 32(13):2192-2204.

Blackburn, Patrick R; Ebstein, Frédéric; Hsieh, Tzung-Chien; Motta, Marialetizia; Radio, Francesca Clementina; Herkert, Johanna C; Rinne, Tuula; Thiffault, Isabelle; Rapp, Michele; Alders, Mariel; Maas, Saskia; Gérard, Bénédicte; Smol, Thomas; Vincent-Delorme, Catherine; Cogné, Benjamin; Isidor, Bertrand; Vincent, Marie; Bachmann-Gagescu, Ruxandra; Rauch, Anita; Joset, Pascal; Ferrero, Giovanni Battista; Ciolfi, Andrea; Husson, Thomas; Guerrot, Anne-Marie; Bacino, Carlos; Macmurdo, Colleen; Thompson, Stephanie S; Rosenfeld, Jill A; Faivre, Laurence; Mau-Them, Frederic Tran; et al (2023). Loss-of-function variants in CUL3 cause a syndromic neurodevelopmental disorder. medRxiv 23290941, Cold Spring Harbor Laboratory.

Petkidis, Anthony; Andriasyan, Vardan; Greber, Urs F (2023). Label-free microscopy for virus infections. Microscopy, 72(3):204-212.

Fazilaty, Hassan (2023). Restoration of embryonic gene expression patterns in tissue regeneration and disease. Nature Reviews. Molecular Cell Biology, 24(6):375-376.

Martín-González, Natalia; Gómez-González, Alfonso; Hernando-Pérez, Mercedes; Bauer, Michael; Greber, Urs F; San Martín, Carmen; de Pablo, Pedro J (2023). Adenovirus core protein V reinforces the capsid and enhances genome release from disrupted particles. Science Advances, 9(14):eade9910.

Carrero, Laura; Antequera, Desireé; Alcalde, Ignacio; Megías, Diego; Figueiro-Silva, Joana; Merayo-Lloves, Jesús; Municio, Cristins; Carro, Eva (2023). Disturbed circadian rhythm and retinal degeneration in a mouse model of Alzheimer’s disease. Acta Neuropathologica Communications, 11(1):55.

Voigt, Fabian F; Reuss, Anna Maria; Naert, Thomas; Hildebrand, Sven; Schaettin, Martina; Hotz, Adriana L; Whitehead, Lachlan; Bahl, Armin; Neuhauss, Stephan C F; Roebroeck, Alard; Stoeckli, Esther T; Lienkamp, Soeren S; Aguzzi, Adriano; Helmchen, Fritjof (2023). Reflective multi-immersion microscope objectives inspired by the Schmidt telescope. Nature Biotechnology:Epub ahead of print.

Gurtner, Alessandra; Borrelli, Costanza; Gonzalez-Perez, Ignacio; Bach, Karsten; Acar, Ilhan E; Núñez, Nicolás G; Crepaz, Daniel; Handler, Kristina; Vu, Vivian P; Lafzi, Atefeh; Stirm, Kristin; Raju, Deeksha; Gschwend, Julia; Basler, Konrad; Schneider, Christoph; Slack, Emma; Valenta, Tomas; Becher, Burkhard; Krebs, Philippe; Moor, Andreas E; Arnold, Isabelle C (2023). Active eosinophils regulate host defense and immune responses in colitis. Nature, 615(7950):151-157.

Ladewig, Markus S; Jacobsen, Julius O B; Wagner, Alex H; Danis, Daniel; El Kassaby, Baha; Gargano, Michael; Groza, Tudor; Baudis, Michael; Steinhaus, Robin; Seelow, Dominik; Bechrakis, Nikolaos E; Mungall, Christopher J; Schofield, Paul N; Elemento, Olivier; Smith, Lindsay; McMurry, Julie A; Munoz‐Torres, Monica; Haendel, Melissa A; Robinson, Peter N (2023). GA4GH Phenopackets: A Practical Introduction. Advanced Genetics, 4(1):2200016.

Doncheva, Nadezhda T; Morris, John H; Holze, Henrietta; Kirsch, Rebecca; Nastou, Katerina C; Cuesta-Astroz, Yesid; Rattei, Thomas; Szklarczyk, Damian; von Mering, Christian; Jensen, Lars J (2023). Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks. Journal of Proteome Research, 22(2):637-646.

Hiatt, Susan M; Trajkova, Slavica; Sebastiano, Matteo Rossi; Partridge, E Christopher; et al; Bachmann-Gagescu, Ruxandra; Rauch, Anita (2023). Deleterious, protein-altering variants in the transcriptional coregulator ZMYM3 in 27 individuals with a neurodevelopmental delay phenotype. American Journal of Human Genetics, 110(2):215-227.

Laganenka, Leanid; Lee, Jae-Woo; Malfertheiner, Lukas; Dieterich, Cora Lisbeth; Fuchs, Lea; Piel, Jörn; von Mering, Christian; Sourjik, Victor; Hardt, Wolf-Dietrich (2023). Chemotaxis and autoinducer-2 signalling mediate colonization and contribute to co-existence of Escherichia coli strains in the murine gut. Nature Microbiology, 8(2):204-217.

Moret, Michael; Pachon Angona, Irene; Cotos, Leandro; Yan, Shen; Atz, Kenneth; Brunner, Cyrill; Baumgartner, Martin; Grisoni, Francesca; Schneider, Gisbert (2023). Leveraging molecular structure and bioactivity with chemical language models for de novo drug design. Nature Communications, 14(1):114.

Szklarczyk, Damian; Kirsch, Rebecca; Koutrouli, Mikaela; Nastou, Katerina; Mehryary, Farrokh; Hachilif, Radja; Gable, Annika L; Fang, Tao; Doncheva, Nadezhda T; Pyysalo, Sampo; Bork, Peer; Jensen, Lars J; von Mering, Christian (2023). The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest. Nucleic Acids Research, 51(D1):D638-D646.

Hernández-Plaza, Ana; Szklarczyk, Damian; Botas, Jorge; Cantalapiedra, Carlos P; Giner-Lamia, Joaquín; Mende, Daniel R; Kirsch, Rebecca; Rattei, Thomas; Letunic, Ivica; Jensen, Lars J; Bork, Peer; von Mering, Christian; Huerta-Cepas, Jaime (2023). eggNOG 6.0: enabling comparative genomics across 12 535 organisms. Nucleic Acids Research, 51(D1):D389-D394.

Fullam, Anthony; Letunic, Ivica; Schmidt, Thomas S B; Ducarmon, Quinten R; Karcher, Nicolai; Khedkar, Supriya; Kuhn, Michael; Larralde, Martin; Maistrenko, Oleksandr M; Malfertheiner, Lukas; Milanese, Alessio; Rodrigues, Joao Frederico Matias; Sanchis-López, Claudia; Schudoma, Christian; Szklarczyk, Damian; Sunagawa, Shinichi; Zeller, Georg; Huerta-Cepas, Jaime; von Mering, Christian; Bork, Peer; Mende, Daniel R (2023). proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes. Nucleic Acids Research, 51(D1):D760-D766.

Häfliger, Janine; Schwarzfischer, Marlene; Atrott, Kirstin; Stanzel, Claudia; Morsy, Yasser; Wawrzyniak, Marcin; Lang, Silvia; Valenta, Tomas; Basler, Konrad; Rogler, Gerhard; Scharl, Michael; Spalinger, Marianne R (2023). Glycoprotein (GP)96 is essential for maintaining intestinal epithelial architecture by supporting its self-renewal capacity. Cellular and Molecular Gastroenterology and Hepatology, 15(3):717-739.

Dumoulin, Alexandre; Stoeckli, Esther T (2023). Looking for Guidance - Models and Methods to Study Axonal Navigation. Neuroscience, 508:30-39.

Karakulak, Tülay; Szklarczyk, Damian; Saylan, Cemil Can; Moch, Holger; von Mering, Christian; Kahraman, Abdullah (2023). CanIsoNet: a database to study the functional impact of isoform switching events in diseases. Bioinformatics advances, 3(1):vbad050.

Huang, Qingyao; Baudis, Michael (2023). Candidate targets of copy number deletion events across 17 cancer types. Frontiers in Genetics, 13:1017657.

Neuhauss, Stephan C F (2022). Editorial: Insights in methods and model organisms: 2021. Frontiers in Molecular Neuroscience, 15:1104424.

Maruyama, Takamitsu; Hasegawa, Daigaku; Valenta, Tomas; Haigh, Jody; Bouchard, Maxime; Basler, Konrad; Hsu, Wei (2022). GATA3 mediates nonclassical β-catenin signaling in skeletal cell fate determination and ectopic chondrogenesis. Science Advances, 8(48):eadd6172.

Prummel, Karin D; Crowell, Helena L; Nieuwenhuize, Susan; Brombacher, Eline C; Daetwyler, Stephan; Soneson, Charlotte; Kresoja-Rakic, Jelena; Kocere, Agnese; Ronner, Manuel; Ernst, Alexander; Labbaf, Zahra; Clouthier, David E; Firulli, Anthony B; Sánchez-Iranzo, Héctor; Naganathan, Sundar R; O’Rourke, Rebecca; Raz, Erez; Mercader, Nadia; Burger, Alexa; Felley-Bosco, Emanuela; Huisken, Jan; Robinson, Mark D; Mosimann, Christian (2022). Hand2 delineates mesothelium progenitors and is reactivated in mesothelioma. Nature Communications, 13(1):1677.

Masek, Markus; Etard, Christelle; Hofmann, Claudia; Hülsmeier, Andreas J; Zang, Jingjing; Takamiya, Masanari; Gesemann, Matthias; Neuhauss, Stephan C F; Hornemann, Thorsten; Strähle, Uwe; Bachmann-Gagescu, Ruxandra (2022). Loss of the Bardet-Biedl protein Bbs1 alters photoreceptor outer segment protein and lipid composition. Nature Communications, 13:1282.

Möller, Katrin; Brambach, Max; Villani, Ambra; Gallo, Elisa; Gilmour, Darren; Peri, Francesca (2022). A role for the centrosome in regulating the rate of neuronal efferocytosis by microglia in vivo. eLife, 11:e82094.

Pelisek, Jaroslav; Reutersberg, Benedikt; Greber, Urs F; Zimmermann, Alexander (2022). Vascular dysfunction in COVID-19 patients: update on SARS-CoV-2 infection of endothelial cells and the role of long non-coding RNAs. Clinical Science, 136(21):1571-1590.

Durrer, Jan; Agrawal, Prajwal; Ozgul, Ali; Neuhauss, Stephan C F; Nama, Nitesh; Ahmed, Daniel (2022). A robot-assisted acoustofluidic end effector. Nature Communications, 13:6370.

Olszewski, Dominik; Georgi, Fanny; Murer, Luca; Andriasyan, Vardan; Kuttler, Fabien; Petkidis, Anthony; Witte, Robert; Yakimovich, Artur; Fischer, Lucy; Rozanova, Alina; Yamauchi, Yohei; Turcatti, Gerardo; Greber, Urs F (2022). High-content, arrayed compound screens with rhinovirus, influenza A virus and herpes simplex virus infections. Scientific Data, 9:610.

Greber, Urs F; Suomalainen, Maarit (2022). Adenovirus Entry - Stability, Uncoating and Nuclear Import. Molecular Microbiology, 118(4):309-320.

Myren‐Svelstad, Sverre; Jamali, Ahmed; Ophus, Sunniva S; D'gama, Percival P; Ostenrath, Anna M; Mutlu, Aytac Kadir; Hoffshagen, Helene Homme; Hotz, Adriana L; Neuhauss, Stephan C F; Jurisch‐Yaksi, Nathalie; Yaksi, Emre (2022). Elevated photic response is followed by a rapid decay and depressed state in ictogenic networks. Epilepsia, 63(10):2543-2560.

Cordovado, Amélie; Schaettin, Martina; Jeanne, Médéric; et al; Stoeckli, Esther T (2022). SEMA6B variants cause intellectual disability and alter dendritic spine density and axon guidance. Human Molecular Genetics, 31(19):3325-3340.

Gable, Annika L; Szklarczyk, Damian; Lyon, David; Matias Rodrigues, João F; von Mering, Christian (2022). Systematic assessment of pathway databases, based on a diverse collection of user-submitted experiments. Briefings in Bioinformatics, 23(5):bbac355.

Özsoy, Çağla; Hotz, Adriana L; Rieser, Nicolas N; Chen, Zhenyue; Deán-Ben, Xosé Luís; Neuhauss, Stephan C F; Razansky, Daniel (2022). Volumetric optoacoustic neurobehavioral tracking of epileptic seizures in freely-swimming zebrafish larvae. Frontiers in Molecular Neuroscience, 15:1004518.

Krieg, Carsten; Weber, Lukas M; Fosso, Bruno; Marzano, Marinella; Hardiman, Gary; Olcina, Monica M; Domingo, Enric; El Aidy, Sahar; Mallah, Khalil; Robinson, Mark D; Guglietta, Silvia (2022). Complement downregulation promotes an inflammatory signature that renders colorectal cancer susceptible to immunotherapy. Journal for ImmunoTherapy of Cancer, 10(9):e004717.

Dean, Kevin M; Chakraborty, Tonmoy; Daetwyler, Stephan; Lin, Jinlong; Garrelts, Gerard; M'Saad, Ons; Mekbib, Hannahmariam T; Voigt, Fabian F; Schaettin, Martina; Stoeckli, Esther T; Helmchen, Fritjof; Bewersdorf, Joerg; Fiolka, Reto (2022). Isotropic imaging across spatial scales with axially swept light-sheet microscopy. Nature Protocols, 17(9):2025-2053.

Caviglia, Sara; Unterweger, Iris A; Gasiūnaitė, Akvilė; Vanoosthuyse, Alexandre E; Cutrale, Francesco; Trinh, Le A; Fraser, Scott E; Neuhauss, Stephan C F; Ober, Elke A (2022). FRaeppli: a multispectral imaging toolbox for cell tracing and dense tissue analysis in zebrafish. Development, 149(16):dev199615.

Kramer, Bernhard A; del Castillo, Jacobo Sarabia; Pelkmans, Lucas (2022). Multimodal perception links cellular state to decision-making in single cells. Science, 377(6606):642-648.

Berry, Scott; Pelkmans, Lucas (2022). Mechanisms of cellular mRNA transcript homeostasis. Trends in Cell Biology, 32(8):655-668.

COVID-19 Host Genetics Initiative (2022). A first update on mapping the human genetic architecture of COVID-19. Nature, 608(7921):E1-E10.

Huang, Qingyao; Baudis, Michael (2022). Candidate targets of copy number deletion events across 17 cancer types. bioRxiv 498080, Cold Spring Harbor Laboratory.

Rusterholz, Tamara D S; Hofmann, Claudia; Bachmann-Gagescu, Ruxandra (2022). Insights Gained From Zebrafish Models for the Ciliopathy Joubert Syndrome. Frontiers in Genetics, 13:939527.

Kannan, Abhilash; Suomalainen, Maarit; Volle, Romain; Bauer, Michael; Amsler, Marco; Trinh, Hung V; Vavassori, Stefano; Schmid, Jana Pachlopnik; Vilhena, Guilherme; Marin-Gonzalez, Alberto; Pérez, Rubén; Franceschini, Andrea; von Mering, Christian; Hemmi, Silvio; Greber, Urs F (2022). Sequence-Specific Features of Short Double-Strand, Blunt-End RNAs Have RIG-I- and Type 1 Interferon-Dependent or -Independent Anti-Viral Effects. Viruses, 14(7):1407.

Baeriswyl, Thomas; Schaettin, Martina; Leoni, Simone; Dumoulin, Alexandre; Stoeckli, Esther T (2022). Endoglycan Regulates Purkinje Cell Migration by Balancing Cell-Cell Adhesion. Frontiers in Neuroscience, 16:894962.

Mytlis, Avishag; Kumar, Vineet; Qiu, Tao; Deis, Rachael; Hart, Neta; Levy, Karine; Masek, Markus; Shawahny, Amal; Ahmad, Adam; Eitan, Hagai; Nather, Farouq; Adar-Levor, Shai; Birnbaum, Ramon Y; Elia, Natalie; Bachmann-Gagescu, Ruxandra; Roy, Sudipto; Elkouby, Yaniv M (2022). Control of meiotic chromosomal bouquet and germ cell morphogenesis by the zygotene cilium. Science, 376:6599.

Orjuela, Stephany; Parker, Hannah R; Sajibu, Sija; Cereatti, Fabrizio; Sauter, Matthias; Buffoli, Federico; Robinson, Mark D; Marra, Giancarlo (2022). Disentangling tumorigenesis-associated DNA methylation changes in colorectal tissues from those associated with ageing. Epigenetics, 17(6):677-694.

Berry, Scott; Müller, Micha; Rai, Arpan; Pelkmans, Lucas (2022). Feedback from nuclear RNA on transcription promotes robust RNA concentration homeostasis in human cells. Cell Systems, 13(6):454-470.e15.

Tuschl, Karin; White, Richard J; Trivedi, Chintan; Valdivia, Leonardo E; Niklaus, Stephanie; Bianco, Isaac H; Dadswell, Chris; González-Méndez, Ramón; Sealy, Ian M; Neuhauss, Stephan C F; Houart, Corinne; Rihel, Jason; Wilson, Stephen W; Busch-Nentwich, Elisabeth M (2022). Loss of slc39a14 causes simultaneous manganese hypersensitivity and deficiency in zebrafish. Disease Models & Mechanisms, 15(6):dmm044594.

Jacobsen, Julius O B; Baudis, Michael; Baynam, Gareth S; Beckmann, Jacques S; Beltran, Sergi; Buske, Orion J; et al (2022). The GA4GH Phenopacket schema defines a computable representation of clinical data. Nature Biotechnology, 40(6):817-820.

Fergin, Aleksandra; Boesch, Gabriel; Greter, Nadja R; Berger, Simon; Hajnal, Alex (2022). Tissue-specific inhibition of protein sumoylation uncovers diverse SUMO functions during C. elegans vulval development. PLoS Genetics, 18(6):e1009978.

Righelli, Dario; Weber, Lukas M; Crowell, Helena L; Pardo, Brenda; Collado-Torres, Leonardo; Ghazanfar, Shila; Lun, Aaron T L; Hicks, Stephanie C; Risso, Davide (2022). SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor. Bioinformatics, 38(11):3128-3131.

Soutschek, Michael; Germade, Tomás; Germain, Pierre-Luc; Schratt, Gerhard (2022). enrichMiR predicts functionally relevant microRNAs based on target collections. Nucleic Acids Research, 50(W1):W280-W289.

Vaccaro, Giuseppe; Dumoulin, Alexandre; Zuñiga, Nikole R; Bandtlow, Christine E; Stoeckli, Esther T (2022). The Nogo-66 Receptors NgR1 and NgR3 Are Required for Commissural Axon Pathfinding. Journal of Neuroscience, 42(20):4087-4100.

Böddeker, Thomas J; Rosowski, Kathryn A; Berchtold, Doris; Emmanouilidis, Leonidas; Han, Yaning; Allain, Frédéric H T; Style, Robert W; Pelkmans, Lucas; Dufresne, Eric R (2022). Non-specific adhesive forces between filaments and membraneless organelles. Nature Physics, 18(5):571-578.

Soutschek, Michael; Gross, Fridolin; Schratt, Gerhard; Germain, Pierre-Luc (2022). scanMiR: a biochemically based toolkit for versatile and efficient microRNA target prediction. Bioinformatics, 38(9):2466-2473.

Čaušević, Senka; Tackmann, Janko; Sentchilo, Vladimir; von Mering, Christian; van der Meer, Jan Roelof (2022). Reproducible Propagation of Species-Rich Soil Bacterial Communities Suggests Robust Underlying Deterministic Principles of Community Formation. mSystems, 7(2):e0016022.

von Ziegler, Lukas M; Floriou-Servou, Amalia; Waag, Rebecca; Das Gupta, Rebecca R; Sturman, Oliver; Gapp, Katharina; Maat, Christina A; Kockmann, Tobias; Lin, Han-Yu; Duss, Sian N; Privitera, Mattia; Hinte, Laura; von Meyenn, Ferdinand; Zeilhofer, Hanns Ulrich; Germain, Pierre-Luc; Bohacek, Johannes (2022). Multiomic profiling of the acute stress response in the mouse hippocampus. Nature Communications, 13:1824.

Böddeker, Thomas J; Rosowski, Kathryn A; Berchtold, Doris; Emmanouilidis, Leonidas; Han, Yaning; Allain, Frédéric H T; Style, Robert W; Pelkmans, Lucas; Dufresne, Eric R (2022). Publisher Correction: Non-specific adhesive forces between filaments and membraneless organelles. Nature Physics, 18(5):601.

Rambla, Jordi; Baudis, Michael; Ariosa, Roberto; Beck, Tim; Fromont, Lauren A; Navarro, Arcadi; Paloots, Rahel; Rueda, Manuel; Saunders, Gary; Singh, Babita; Spalding, John D; Törnroos, Juha; Vasallo, Claudia; Veal, Colin D; Brookes, Anthony J (2022). Beacon v2 and Beacon networks: A "lingua franca" for federated data discovery in biomedical genomics, and beyond. Human Mutation, 43(6):791-799.

Rubinstein, Mark P; Williams, Cameron; Mart, Caroline; Beall, Jonathan; MacPherson, Linda; Azar, Joseph; Swiderska-Syn, Marzena; Manca, Paolo; Gibney, Barry C; Robinson, Mark D; Krieg, Carsten; Hill, Elizabeth G; Taha, Sharif A; Rock, Amy D; Lee, John H; Soon-Shiong, Patrick; Wrangle, John (2022). Phase I Trial Characterizing the Pharmacokinetic Profile of N-803, a Chimeric IL-15 Superagonist, in Healthy Volunteers. Journal of Immunology, 208(6):1362-1370.

Wagner, Johanna; Masek, Markus; Jacobs, Andrea; Soneson, Charlotte; Sivapatham, Sujana; Damond, Nicolas; de Souza, Natalie; Robinson, Mark D; Bodenmiller, Bernd (2022). Mass cytometric and transcriptomic profiling of epithelial-mesenchymal transitions in human mammary cell lines. Scientific Data, 9:44-60.

Lattmann, Evelyn; Deng, Ting; Walser, Michael; Widmer, Patrizia; Rexha-Lambert, Charlotte; Prasad, Vibhu; Eichhoff, Ossia; Daube, Michael; Dummer, Reinhard; Levesque, Mitchell P; Hajnal, Alex (2022). A DNA replication-independent function of pre-replication complex genes during cell invasion in C. elegans. PLoS Biology, 20(2):e3001317.

Murer, Luca; Petkidis, Anthony; Vallet, Thomas; Vignuzzi, Marco; Greber, Urs F (2022). Chemical evolution of Rhinovirus identifies capsid-destabilizing mutations driving low pH-independent genome uncoating. Journal of Virology, 96(2):e0106021.

Hotz, Adriana L; Jamali, Ahmed; Rieser, Nicolas N; Niklaus, Stephanie; Aydin, Ecem; Myren‐Svelstad, Sverre; Lalla, Laetitia; Jurisch‐Yaksi, Nathalie; Yaksi, Emre; Neuhauss, Stephan C F (2022). Loss of glutamate transporter eaat2a leads to aberrant neuronal excitability, recurrent epileptic seizures, and basal hypoactivity. Glia, 70:196-214.

Spiri, Silvan; Berger, Simon; Mereu, Louisa; DeMello, Andrew; Hajnal, Alex (2022). Reciprocal EGFR signaling in the anchor cell ensures precise inter-organ connection during Caenorhabditis elegans vulval morphogenesis. Development, 149(1):dev199900.

Ratti, Emanuele; Germain, Pierre-Luc (2022). A relic of design: against proper functions in biology. Biology & Philosophy, 37:27.

Burja, Blaž; Paul, Dominique; Tastanova, Aizhan; Edalat, Sam Galen; Gerber, Reto; Houtman, Miranda; Elhai, Muriel; Bürki, Kristina; Staeger, Ramon; Restivo, Gaetana; Lang, Ramon; Sodin-Šemrl, Snežna; Lakota, Katja; Tomšič, Matija; Levesque, Mitchell P; Distler, Oliver; Rotar, Žiga; Robinson, Mark D; Frank-Bertoncelj, Mojca (2022). An Optimized Tissue Dissociation Protocol for Single-Cell RNA Sequencing Analysis of Fresh and Cultured Human Skin Biopsies. Frontiers in Cell and Developmental Biology, 10:872688.

Volle, Romain; Murer, Luca; Petkidis, Anthony; Andriasyan, Vardan; Savi, Alessandro; Bircher, Cornelia; Meili, Nicole; Fischer, Lucy; Sequeira, Daniela Policarpo; Mark, Daniela Katharina; Gomez-Gonzalez, Alfonso; Greber, Urs F (2022). Methylene blue, Mycophenolic acid, Posaconazole, and Niclosamide inhibit SARS-CoV-2 Omicron variant BA.1 infection of human airway epithelial organoids. Current Research in Microbial Sciences, 3:100158.

Sikorski, Johannes; Baumgartner, Vanessa; Birkhofer, Klaus; Boeddinghaus, Runa S; Bunk, Boyke; Fischer, Markus; Fösel, Bärbel U; Friedrich, Michael W; Göker, Markus; Hölzel, Norbert; Huang, Sixing; Huber, Katharina J; Kandeler, Ellen; Klaus, Valentin H; Kleinebecker, Till; Marhan, Sven; von Mering, Christian; Oelmann, Yvonne; Prati, Daniel; Regan, Kathleen M; Richter-Heitmann, Tim; Rodrigues, João F Matias; Schmitt, Barbara; Schöning, Ingo; Schrumpf, Marion; Schurig, Elisabeth; Solly, Emily F; Wolters, Volkmar; Overmann, Jörg (2022). The Evolution of Ecological Diversity in Acidobacteria. Frontiers in Microbiology, 13:715637.

Bauer, Michael; Gomez-Gonzalez, Alfonso; Suomalainen, Maarit; Schilling, Nicolas; Hemmi, Silvio; Greber, Urs F (2021). A viral ubiquitination switch attenuates innate immunity and triggers nuclear import of virion DNA and infection. Science Advances, 7(51):eabl7150.

Bieri, Manuela; Hendrickx, Rodinde; Bauer, Michael; Yu, Bin; Jetzer, Tania; Dreier, Birgit; Mittl, Peer R E; Sobek, Jens; Plückthun, Andreas; Greber, Urs F; Hemmi, Silvio (2021). The RGD-binding integrins αvβ6 and αvβ8 are receptors for mouse adenovirus-1 and -3 infection. PLoS Pathogens, 17(12):e1010083.

Bai, Yu; Caussinus, Emmanuel; Leo, Stefano; Bosshardt, Fritz; Myachina, Faina; Rot, Gregor; Robinson, Mark D; Lehner, Christian F (2021). A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells. BMC Genomics, 22:771.

Milosavljevic, Stefan; Kuo, Tony; Decarli, Samuele; Mohn, Lucas; Sese, Jun; Shimizu, Kentaro K; Shimizu-Inatsugi, Rie; Robinson, Mark D (2021). ARPEGGIO: Automated Reproducible Polyploid EpiGenetic GuIdance workflOw. BMC Genomics, 22:547.

Gerber, Reto; Robinson, Mark D (2021). Censcyt: censored covariates in differential abundance analysis in cytometry. BMC Bioinformatics, 22(1):235.

Garbelli, Marco; Neuhauss, Stephan C F (2021). Color vision: Parsing spectral information for opponent color vision in the fish retina. Current Biology, 31(23):R1525-R1527.

Borrelli, Costanza; Valenta, Tomas; Handler, Kristina; Vélez, Karelia; Gurtner, Alessandra; Moro, Giulia; Lafzi, Atefeh; De Vargas Roditi, Laura; Hausmann, George; Arnold, Isabelle C; Moor, Andreas E; Basler, Konrad (2021). Differential regulation of β-catenin-mediated transcription via N- and C-terminal co-factors governs identity of murine intestinal epithelial stem cells. Nature Communications, 12:1368.

Schmeing, Stephan; Robinson, Mark D (2021). ReSeq simulates realistic Illumina high-throughput sequencing data. Genome Biology, 22:67.

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Simigdala, Nikiana. A high-throughput strategy for the discovery of novel compartment-specific genes in the drosophila wing imaginal disc. 2013, University of Zurich, Faculty of Science.

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Radermacher, Pablo Till. Coping with temperature change during drosophila melanogaster development: The role of O-GlcNAc modification. 2013, University of Zurich, Faculty of Science.

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Taneja Raychaudhuri, Nitika. Epigenetic control of centromeric Cid/CENP-A levels during spermatogenesis and development. 2013, University of Zurich, Faculty of Science.

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