Items where Subject is "07 Faculty of Science > Institute of Molecular Life Sciences"

Lang, Judith; Bohn, Patrick; Bhat, Hilal; Jastrow, Holger; Walkenfort, Bernd; Cansiz, Feyza; Fink, Julian; Bauer, Michael; Olszewski, Dominik; Greber, Urs F; et al (2020). Acid ceramidase of macrophages traps herpes simplex virus in multivesicular bodies and protects from severe disease. Nature Communications, 11:1338.

Tiberi, Simone; Robinson, Mark D (2020). BANDITS: Bayesian differential splicing accounting for sample-to-sample variability and mapping uncertainty. Genome Biology, 21:69.

de Medeiros, Gustavo; Kromm, Dimitri; Balazs, Balint; Norlin, Nils; Günther, Stefan; Izquierdo, Emiliano; Ronchi, Paolo; Komoto, Shinya; Krzic, Uros; Schwab, Yannick; Peri, Francesca; de Renzis, Stefano; Leptin, Maria; Rauzi, Matteo; Hufnagel, Lars (2020). Cell and tissue manipulation with ultrashort infrared laser pulses in light-sheet microscopy. Scientific Reports, 10:1942.

Georgi, Fanny; Andriasyan, Vardan; Witte, Robert; Murer, Luca; Hemmi, Silvio; Yu, Lisa; Grove, Melanie; Meili, Nicole; Kuttler, Fabien; Yakimovich, Artur; Turcatti, Gerardo; Greber, Urs F (2020). The FDA-approved drug Nelfinavir inhibits lytic cell-free, but not cell-associated non-lytic transmission of human adenovirus. Antimicrobial Agents and Chemotherapy:Epub ahead of print.

Hernando-Pérez, Mercedes; Martín-González, Natalia; Pérez-Illana, Marta; Suomalainen, Maarit; Condezo, Gabriela N; Ostapchuk, Philomena; Gallardo, José; Menéndez, Margarita; Greber, Urs F; Hearing, Patrick; de Pablo, Pedro J; San Martín, Carmen (2020). Dynamic competition for hexon binding between core protein VII and lytic protein VI promotes adenovirus maturation and entry. Proceedings of the National Academy of Sciences of the United States of America, 117(24):13699-13707.

Greber, Urs F (2020). Adenoviruses – Infection, pathogenesis and therapy. FEBS letters, 594(12):1818-1827.

Hartmann, Jonas; Wong, Mie; Gallo, Elisa; Gilmour, Darren (2020). An image-based data-driven analysis of cellular architecture in a developing tissue. eLife, 9:e55913.

Mereu, Louisa; Morf, Matthias K; Spiri, Silvan; Gutierrez, Peter; Escobar-Restrepo, Juan M; Daube, Michael; Walser, Michael; Hajnal, Alex (2020). Polarized epidermal growth factor secretion ensures robust vulval cell fate specification in Caenorhabditis elegans. Development, 147(11):dev175760.

Haller, Otto; Kochs, Georg (2020). Mx genes: host determinants controlling influenza virus infection and trans-species transmission. Human Genetics, 139(6-7):695-705.

Malan-Müller, Stefanie; de Souza, Vladimir B C; Daniels, Willie M U; Seedat, Soraya; Robinson, Mark D; Hemmings, Sîan M J (2020). Shedding Light on the Transcriptomic Dark Matter in Biological Psychiatry: Role of Long Noncoding RNAs in D-cycloserine-Induced Fear Extinction in Posttraumatic Stress Disorder. Omics : a journal of integrative biology, 24(6):352-369.

Georgi, Fanny; Greber, Urs F (2020). The Adenovirus Death Protein – A small membrane protein controls cell lysis and disease. FEBS letters, 594(12):1861-1878.

Chen, Zhiyong; Luciani, Alessandro; Mateos, José María; Barmettler, Gery; Giles, Rachel H; Neuhauss, Stephan C F; Devuyst, Olivier (2020). Transgenic zebrafish modeling low-molecular-weight proteinuria and lysosomal storage diseases. Kidney International, 97(6):1150-1163.

Latour, Brooke L; Van De Weghe, Julie C; Rusterholz, Tamara D S; Letteboer, Stef J F; Gomez, Arianna; Shaheen, Ranad; Gesemann, Matthias; Karamzade, Arezou; Asadollahi, Mostafa; Barroso-Gil, Miguel; Chitre, Manali; Grout, Megan E; van Reeuwijk, Jeroen; van Beersum, Sylvia E C; Miller, Caitlin V; Dempsey, Jennifer C; Morsy, Heba; Bamshad, Michael J; Nickerson, Deborah A; Neuhauss, Stephan C F; Boldt, Karsten; Ueffing, Marius; Keramatipour, Mohammad; Sayer, John A; Alkuraya, Fowzan S; Bachmann-Gagescu, Ruxandra; Roepman, Ronald; Doherty, Dan (2020). Dysfunction of the ciliary ARMC9/TOGARAM1 protein module causes Joubert syndrome. Journal of Clinical Investigation:Epub ahead of print.

Wong, Mie; Gilmour, Darren (2020). Getting back on track: exploiting canalization to uncover the mechanisms of developmental robustness. Current Opinion in Genetics & Development, 63:53-60.

Prasad, Vibhu; Suomalainen, Maarit; Jasiqi, Yllza; Hemmi, Silvio; Hearing, Patrick; Hosie, Louise; Burgert, Hans-Gerhard; Greber, Urs F (2020). The UPR sensor IRE1α and the adenovirus E3-19K glycoprotein sustain persistent and lytic infections. Nature Communications, 11:1997.

Ruffell, Daniela (2020). Coronavirus SARS‐CoV‐2: filtering fact from fiction in the infodemic. FEBS letters, 594(7):1127-1131.

Huang, Qingyao; Baudis, Michael (2020). Enabling population assignment from cancer genomes with SNP2pop. Scientific Reports, 10:4846.

Rai, Arpan; Pelkmans, Lucas (2020). Liquid droplets in the skin. Science, 367(6483):1193-1194.

Deng, Ting; Stempor, Przemyslaw; Appert, Alex; Daube, Michael; Ahringer, Julie; Hajnal, Alex; Lattmann, Evelyn (2020). The Caenorhabditis elegans homolog of the Evi1 proto-oncogene, egl-43, coordinates G1 cell cycle arrest with pro-invasive gene expression during anchor cell invasion. PLoS Genetics, 16(3):e1008470.

Ali, Zaheer; Zang, Jingjing; Lagali, Neil; Schmitner, Nicole; Salvenmoser, Willi; Mukwaya, Anthony; Neuhauss, Stephan C F; Jensen, Lasse D; Kimmel, Robin A (2020). Photoreceptor degeneration accompanies vascular changes in a Zebrafish model of diabetic retinopathy. Investigative Ophthalmology & Visual Science [IOVS], 61(2):43.

Wong, Mie; Newton, Lionel R; Hartmann, Jonas; Hennrich, Marco L; Wachsmuth, Malte; Ronchi, Paolo; Guzmán-Herrera, Alejandra; Schwab, Yannick; Gavin, Anne-Claude; Gilmour, Darren (2020). Dynamic buffering of extracellular chemokine by a dedicated scavenger pathway enables robust adaptation during directed tissue migration. Developmental Cell, 52(4):492-508.e10.

Bruns, Dominique; Gawehn, Erik; Kumar, Karthiga Santhana; Schneider, Petra; Baumgartner, Martin; Schneider, Gisbert (2020). Identification of Synthetic Activators of Cancer Cell Migration by Hybrid Deep Learning. Chembiochem, 21(4):500-507.

Haag, Andrea; Walser, Michael; Henggeler, Adrian; Hajnal, Alex (2020). The CHORD protein CHP-1 regulates EGF receptor trafficking and signaling in C. elegans and in human cells. eLife, 9:e50986.

Cianciolo Cosentino, Chiara; Berto, Alessandro; Pelletier, Stéphane; Hari, Michelle; Loffing, Johannes; Neuhauss, Stephan C F; Doye, Valérie (2020). Author correction: Moderate Nucleoporin 133 deficiency leads to glomerular damage in zebrafish. Scientific Reports, 10(1):756.

Konietzka, Jan; Fritz, Maximilian; Spiri, Silvan; McWhirter, Rebecca; Leha, Andreas; Palumbos, Sierra; Costa, Wagner Steuer; Oranth, Alexandra; Gottschalk, Alexander; Miller, David M; Hajnal, Alex; Bringmann, Henrik (2020). Epidermal Growth Factor Signaling Promotes Sleep through a Combined Series and Parallel Neural Circuit. Current Biology, 30(1):1-16.e13.

Knop, Janin; Spilgies, Lisanne M; Rufli, Stefanie; Reinhart, Ramona; Vasilikos, Lazaros; Yabal, Monica; Owsley, Erika; Jost, Philipp J; Marsh, Rebecca A; Wajant, Harald; Robinson, Mark D; Kaufmann, Thomas; Wong, W Wei-Lynn (2020). Correction: TNFR2 induced priming of the inflammasome leads to a RIPK1-dependent cell death in the absence of XIAP. Cell Death and Disease, 11(1):56.

Frank, C Andrew; James, Thomas D; Müller, Martin (2020). Homeostatic control of Drosophila neuromuscular junction function. Synapse, 74(1):23783-23789.

Carrio-Cordo, Paula; Baudis, Michael (2020). Mountains and Chasms: Surveying the Oncogenomic Publication Landscape. Oncology, 98(Suppl. 6):332-343.

Shaul, Merav E; Eyal, Ophir; Guglietta, Silvia; Aloni, Pazzit; Zlotnik, Asaf; Forkosh, Ester; Levy, Liran; Weber, Lukas M; Levin, Yonathan; Pomerantz, Alon; Nechushtan, Hovav; Eruslanov, Evgeniy; Singhal, Sunil; Robinson, Mark D; Krieg, Carsten; Fridlender, Zvi G (2020). Circulating neutrophil subsets in advanced lung cancer patients exhibit unique immune signature and relate to prognosis. FASEB Journal, 34(3):4204-4218.

Lähnemann, David; Köster, Johannes; Szczurek, Ewa; McCarthy, Davis J; Hicks, Stephanie C; Robinson, Mark D; et al (2020). Eleven grand challenges in single-cell data science. Genome Biology, 21:31.

Tsapara, Georgia; Andermatt, Irwin; Stoeckli, Esther T (2020). Gene Silencing in Chicken Brain Development. In: Sprecher, Simon G. Brain Development. Humana, New York, NY: Springer, 439-456.

Greber, Urs F (2020). Virale Pandemien - Gedanken aus der Grundlagenforschung. Zürich: Forschung für Leben.

Kramer, Bernhard A; Pelkmans, Lucas (2019). Cellular state determines the multimodal signaling response of single cells. bioRxiv 880930, University of Zurich.

Schlegel, Domino K; Glasauer, Stella M K; Mateos, José M; Barmettler, Gery; Ziegler, Urs; Neuhauss, Stephan C F (2019). A New Zebrafish Model for CACNA2D4-Dysfunction. Investigative Ophthalmology & Visual Science [IOVS], 60(15):5124-5135.

Geirsdottir, Laufey; David, Eyal; Keren-Shaul, Hadas; et al; Peri, Francesca (2019). Cross-Species Single-Cell Analysis Reveals Divergence of the Primate Microglia Program. Cell, 179(7):1609-1622.e16.

Freyre, Christophe A C; Rauher, Pascal C; Ejsing, Christer S; Klemm, Robin W (2019). MIGA2 Links Mitochondria, the ER, and Lipid Droplets and Promotes De Novo Lipogenesis in Adipocytes. Molecular Cell, 76(5):811-825.e14.

Kabakci, Zeynep; Käppeli, Simon; Cantù, Claudio; Jensen, Lasse D; König, Christiane; Toggweiler, Janine; Gentili, Christian; Ribaudo, Giovanni; Zagotto, Giuseppe; Basler, Konrad; Pinna, Lorenzo A; Cozza, Giorgio; Ferrari, Stefano (2019). Pharmacophore-guided discovery of CDC25 inhibitors causing cell cycle arrest and tumor regression. Scientific Reports, 9(1):1335.

Bauer, Michael; Flatt, Justin W; Seiler, Daria; Cardel, Bettina; Emmenlauer, Mario; Boucke, Karin; Suomalainen, Maarit; Hemmi, Silvio; Greber, Urs F (2019). The E3 Ubiquitin Ligase Mind Bomb 1 Controls Adenovirus Genome Release at the Nuclear Pore Complex. Cell Reports, 29(12):3785-3795.e8.

Heller, Davide; Szklarczyk, Damian; von Mering, Christian (2019). Tree reconciliation combined with subsampling improves large scale inference of orthologous group hierarchies. BMC Bioinformatics, 20(1):228.

Delvendahl, Igor; Kita, Katarzyna; Müller, Martin (2019). Rapid and sustained homeostatic control of presynaptic exocytosis at a central synapse. Proceedings of the National Academy of Sciences of the United States of America, 116(47):23783-23789.

Saunders, Gary; Baudis, Michael; Becker, Regina; Beltran, Sergi; Béroud, Christophe; Birney, Ewan; Brooksbank, Cath; Brunak, Søren; Van den Bulcke, Marc; Drysdale, Rachel; Capella-Gutierrez, Salvador; Flicek, Paul; Florindi, Francesco; Goodhand, Peter; Gut, Ivo; Heringa, Jaap; Holub, Petr; Hooyberghs, Jef; Juty, Nick; Keane, Thomas M; Korbel, Jan O; Lappalainen, Ilkka; Leskosek, Brane; Matthijs, Gert; Mayrhofer, Michaela Th; Metspalu, Andres; Navarro, Arcadi; Newhouse, Steven; Nyrönen, Tommi; Page, Angela; et al (2019). Leveraging European infrastructures to access 1 million human genomes by 2022. Nature Reviews. Genetics, 20(11):693-701.

Núñez-León, Daniel; Aguirre-Fernández, Gabriel; Steiner, Andrea; Nagashima, Hiroshi; Jensen, Per; Stoeckli, Esther; Schneider, Richard A; Sánchez-Villagra, Marcelo R (2019). Morphological diversity of integumentary traits in fowl domestication: Insights from disparity analysis and embryonic development. Developmental Dynamics, 248(11):1044-1058.

Heimlicher, Maria B; Bächler, Mirjam; Liu, Minghua; Ibeneche-Nnewihe, Chieze; Florin, Ernst-Ludwig; Hoenger, Andreas; Brunner, Damian (2019). Reversible solidification of fission yeast cytoplasm after prolonged nutrient starvation. Journal of Cell Science, 132(21):jcs231688.

Voigt, Fabian F; Kirschenbaum, Daniel; Platonova, Evgenia; Pagès, Stéphane; Campbell, Robert A A; Kastli, Rahel; Schaettin, Martina; Egolf, Ladan; van der Bourg, Alexander; Bethge, Philipp; Haenraets, Karen; Frézel, Noémie; Topilko, Thomas; Perin, Paola; Hillier, Daniel; Hildebrand, Sven; Schueth, Anna; Roebroeck, Alard; Roska, Botond; Stoeckli, Esther T; Pizzala, Roberto; Renier, Nicolas; Zeilhofer, Hanns Ulrich; Karayannis, Theofanis; Ziegler, Urs; Batti, Laura; Holtmaat, Anthony; Lüscher, Christian; Aguzzi, Adriano; Helmchen, Fritjof (2019). The mesoSPIM initiative: open-source light-sheet microscopes for imaging cleared tissue. Nature Methods, 16(11):1105-1108.

Robinson, Mark D; Vitek, Olga (2019). Benchmarking comes of age. Genome Biology, 20(1):205.

Greber, Urs F; Flatt, Justin W (2019). Adenovirus Entry: From Infection to Immunity. Annual Review of Virology, 6(1):annurev-virology.

Meccariello, Angela; Salvemini, Marco; Primo, Pasquale; Hall, Brantley; Koskinioti, Panagiota; Dalíková, Martina; Gravina, Andrea; Gucciardino, Michela Anna; Forlenza, Federica; Gregoriou, Maria-Eleni; Ippolito, Domenica; Monti, Simona Maria; Petrella, Valeria; Perrotta, Maryanna Martina; Schmeing, Stephan; Ruggiero, Alessia; Scolari, Francesca; Giordano, Ennio; Tsoumani, Konstantina T; Marec, František; Windbichler, Nikolai; Arunkumar, Kallare P; Bourtzis, Kostas; Mathiopoulos, Kostas D; Ragoussis, Jiannis; Vitagliano, Luigi; Tu, Zhijian; Papathanos, Philippos Aris; Robinson, Mark D; Saccone, Giuseppe (2019). Maleness-on-the-Y (MoY) orchestrates male sex determination in major agricultural fruit fly pests. Science, 365(6460):1457-1460.

Tackmann, Janko; Matias Rodrigues, João Frederico; von Mering, Christian (2019). Rapid Inference of Direct Interactions in Large-Scale Ecological Networks from Heterogeneous Microbial Sequencing Data. Cell Systems, 9(3):286-296.e8.

Knop, Janin; Spilgies, Lisanne M; Rufli, Stefanie; Reinhart, Ramona; Vasilikos, Lazaros; Yabal, Monica; Owsley, Erika; Jost, Philipp J; Marsh, Rebecca A; Wajant, Harald; Robinson, Mark D; Kaufmann, Thomas; Wong, W Wei-Lynn (2019). TNFR2 induced priming of the inflammasome leads to a RIPK1-dependent cell death in the absence of XIAP. Cell Death and Disease, 10(10):700.

Choobdar, Sarvenaz; Ahsen, Mehmet E; Crawford, Jake; Tomasoni, Mattia; Fang, Tao; Lamparter, David; Lin, Junyuan; Hescott, Benjamin; Hu, Xiaozhe; Mercer, Johnathan; Natoli, Ted; Narayan, Rajiv; von Mering, C; Subramanian, Aravind; Zhang, Jitao D; Stolovitzky, Gustavo; Kutalik, Zoltán; Lage, Kasper; Slonim, Donna K; Saez-Rodriguez, Julio; Cowen, Lenore J; Bergmann, Sven; Marbach, Daniel (2019). Assessment of network module identification across complex diseases. Nature Methods, 16(9):843-852.

Soneson, Charlotte; Yao, Yao; Bratus-Neuenschwander, Anna; Patrignani, Andrea; Robinson, Mark D; Hussain, Shobbir (2019). A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes. Nature Communications, 10(1):3359.

Van den Berge, Koen; Hembach, Katharina M; Soneson, Charlotte; Tiberi, Simone; Clement, Lieven; Love, Michael I; Patro, Rob; Robinson, Mark D (2019). RNA Sequencing Data: Hitchhiker's Guide to Expression Analysis. Annual Review of Biomedical Data Science, 2(1):139-173.

Son, Jae Hak; Kohlbrenner, Tea; Heinze, Svenia; Beukeboom, Leo W; Bopp, Daniel; Meisel, Richard P (2019). Minimal Effects of Proto-Y Chromosomes on House Fly Gene Expression in Spite of Evidence That Selection Maintains Stable Polygenic Sex Determination. Genetics, 213(1):313-327.

Orjuela, Stephany; Huang, Ruizhu; Hembach, Katharina M; Robinson, Mark D; Soneson, Charlotte (2019). ARMOR: An Automated Reproducible MOdular Workflow for Preprocessing and Differential Analysis of RNA-seq Data. G3 : Genes, Genomes, Genetics, 9(7):2089-2096.

D'Agati, Gianluca; Cabello, Elena María; Frontzek, Karl; Rushing, Elisabeth J; Klemm, Robin; Robinson, Mark D; White, Richard M; Mosimann, Christian; Burger, Alexa (2019). Active receptor tyrosine kinases, but not Brachyury, are sufficient to trigger chordoma in zebrafish. Disease Models & Mechanisms, 12(7):dmm039545.

Krattinger, Simon G; Kang, Joohyun; Bräunlich, Stephanie; Boni, Rainer; Chauhan, Harsh; Selter, Liselotte L; Robinson, Mark D; Schmid, Marc W; Wiederhold, Elena; Hensel, Goetz; Kumlehn, Jochen; Sucher, Justine; Martinoia, Enrico; Keller, Beat (2019). Abscisic acid is a substrate of the ABC transporter encoded by the durable wheat disease resistance gene Lr34. New Phytologist, 223(2):853-866.

Weber, Lukas M; Saelens, Wouter; Cannoodt, Robrecht; Soneson, Charlotte; Hapfelmeier, Alexander; Gardner, Paul P; Boulesteix, Anne-Laure; Saeys, Yvan; Robinson, Mark D (2019). Essential guidelines for computational method benchmarking. Genome Biology, 20:125.

Mariani, Samanta Antonella; Li, Zhuan; Rice, Siobhan; Krieg, Carsten; Fragkogianni, Stamatina; Robinson, Mark D; Vink, Chris Sebastiaan; Pollard, Jeffrey William; Dzierzak, Elaine (2019). Pro-inflammatory Aorta-Associated Macrophages Are Involved in Embryonic Development of Hematopoietic Stem Cells. Immunity, 50(6):1439-1452.e5.

Kaiser, Julia; Maibach, Martina; Salpeter, Iris; Hagenbuch, Niels; de Souza, Vladimir B C; Robinson, Mark D; Schwab, Martin E (2019). The Spinal Transcriptome after Cortical Stroke: In Search of Molecular Factors Regulating Spontaneous Recovery in the Spinal Cord. Journal of Neuroscience, 39(24):4714-4726.

Modic, Miha; Grosch, Markus; Rot, Gregor; Schirge, Silvia; Lepko, Tjasa; Yamazaki, Tomohiro; Lee, Flora C Y; Rusha, Ejona; Shaposhnikov, Dmitry; Palo, Michael; Merl-Pham, Juliane; Cacchiarelli, Davide; Rogelj, Boris; Hauck, Stefanie M; von Mering, Christian; Meissner, Alexander; Lickert, Heiko; Hirose, Tetsuro; Ule, Jernej; Drukker, Micha (2019). Cross-Regulation between TDP-43 and Paraspeckles Promotes Pluripotency-Differentiation Transition. Molecular Cell, 74(5):951-965.e13.

Lun, Xiao-Kang; Szklarczyk, Damian; Gábor, Attila; Dobberstein, Nadine; Zanotelli, Vito Riccardo Tomaso; Saez-Rodriguez, Julio; von Mering, Christian; Bodenmiller, Bernd (2019). Analysis of the Human Kinome and Phosphatome by Mass Cytometry Reveals Overexpression-Induced Effects on Cancer-Related Signaling. Molecular Cell, 74(5):1086-1102.e5.

Brunner, Erich; Yagi, Ryohei; Debrunner, Marc; Beck-Schneider, Dezirae; Burger, Alexa; Escher, Eliane; Mosimann, Christian; Hausmann, George; Basler, Konrad (2019). CRISPR-induced double-strand breaks trigger recombination between homologous chromosome arms. Life Science Alliance, 2(3):e201800267.

Gug, G; Huang, Q; Chiticariu, E; Solovan, C; Baudis, Michael (2019). DNA copy number imbalances in primary cutaneous lymphomas. Journal of the European Academy of Dermatology and Venerology, 33(6):1062-1075.

Haug, Marion F; Berger, Manuela; Gesemann, Matthias; Neuhauss, Stephan C F (2019). Differential expression of PKCα and -β in the zebrafish retina. Histochemistry and Cell Biology, 151(6):521-530.

Maxeiner, Sabrina; Grolleman, Judith; Schmid, Tobias; Kammenga, Jan; Hajnal, Alex (2019). The hypoxia-response pathway modulates RAS/MAPK-mediated cell fate decisions in Caenorhabditis elegans. Life Science Alliance, 2(3):e201800255.

Bachmann-Gagescu, Ruxandra; Neuhauss, Stephan C F (2019). The photoreceptor cilium and its diseases. Current Opinion in Genetics & Development, 56:22-33.

Spalinger, Marianne R; Schmidt, Thomas S B; Schwarzfischer, Marlene; Hering, Larissa; Atrott, Kirstin; Lang, Silvia; Gottier, Claudia; Geirnaert, Annelies; Lacroix, Christophe; Dai, Xuezhi; Rawlings, David J; Chan, Andrew C; von Mering, Christian; Rogler, Gerhard; Scharl, Michael (2019). Protein tyrosine phosphatase non-receptor type 22 modulates colitis in a microbiota-dependent manner. Journal of Clinical Investigation, 129(6):2527-2541.

Wagner, Johanna; Rapsomaniki, Maria Anna; Chevrier, Stéphane; Anzeneder, Tobias; Langwieder, Claus; Dykgers, August; Rees, Martin; Ramaswamy, Annette; Muenst, Simone; Soysal, Savas Deniz; Jacobs, Andrea; Windhager, Jonas; Silina, Karina; van den Broek, Maries; Dedes, Konstantin Johannes; Rodríguez Martínez, Maria; Weber, Walter Paul; Bodenmiller, Bernd (2019). A Single-Cell Atlas of the Tumor and Immune Ecosystem of Human Breast Cancer. Cell, 177(5):1330-1345.

Zurkirchen, Luis; Varum, Sandra; Giger, Sonja; Klug, Annika; Häusel, Jessica; Bossart, Raphaël; Zemke, Martina; Cantù, Claudio; Atak, Zeynep Kalender; Zamboni, Nicola; Basler, Konrad; Sommer, Lukas (2019). Yin Yang 1 sustains biosynthetic demands during brain development in a stage-specific manner. Nature Communications, 10:2192.

Urwyler, Olivier; Izadifar, Azadeh; Vandenbogaerde, Sofie; Sachse, Sonja; Misbaer, Anke; Schmucker, Dietmar (2019). Branch-restricted localization of phosphatase Prl-1 specifies axonal synaptogenesis domains. Science, 364(6439):eaau9952.

Jawaid, Ali; Woldemichael, Bisrat T; Kremer, Eloïse A; Laferriere, Florent; Gaur, Niharika; Afroz, Tariq; Polymenidou, Magdalini; Mansuy, Isabelle M (2019). Memory decline and its reversal in aging and neurodegeneration involve miR-183/96/182 biogenesis. Molecular Neurobiology, 56(5):3451-3462.

Herzog, Chiara; Pons Garcia, Laura; Keatinge, Marcus; Greenald, David; Moritz, Christian; Peri, Francesca; Herrgen, Leah (2019). Rapid clearance of cellular debris by microglia limits secondary neuronal cell death after brain injury in vivo. Development, 146(9):dev174698.

Chatterjee, Bithi; Deng, Yun; Holler, Angelika; Nunez, Nicolas; Azzi, Tarik; Vanoaica, Liliana Danusia; Müller, Anne; Zdimerova, Hana; Antsiferova, Olga; Zbinden, Andrea; Capaul, Riccarda; Dreyer, Johannes H; Nadal, David; Becher, Burkhard; Robinson, Mark D; Stauss, Hans; Münz, Christian (2019). CD8+ T cells retain protective functions despite sustained inhibitory receptor expression during Epstein-Barr virus infection in vivo. PLoS Pathogens, 15(5):e1007748.

Sun, Michael Shoujie; Weber, Joe; Blattner, Ariane C; Chaurasia, Soumya; Lehner, Christian F (2019). MNM and SNM maintain but do not establish achiasmate homolog conjunction during Drosophila male meiosis. PLoS Genetics, 15(5):e1008162.

Cheng, Hung-Wei; Onder, Lucas; Novkovic, Mario; Soneson, Charlotte; Lütge, Mechthild; Pikor, Natalia; Scandella, Elke; Robinson, Mark D; Miyazaki, Jun-Ichi; Tersteegen, Anne; Sorg, Ursula; Pfeffer, Klaus; Rülicke, Thomas; Hehlgans, Thomas; Ludewig, Burkhard (2019). Origin and differentiation trajectories of fibroblastic reticular cells in the splenic white pulp. Nature Communications, 10(1):1739.

Villani, Ambra; Benjaminsen, Jørgen; Moritz, Christian; Henke, Katrin; Hartmann, Jonas; Norlin, Nils; Richter, Kerstin; Schieber, Nicole L; Franke, Tilman; Schwab, Yannick; Peri, Francesca (2019). Clearance by Microglia Depends on Packaging of Phagosomes into a Unique Cellular Compartment. Developmental Cell, 49(1):77-88.e7.

Varum, Sandra; Baggiolini, Arianna; Zurkirchen, Luis; Atak, Zeynep Kalender; Cantù, Claudio; Marzorati, Elisa; Bossart, Raphaël; Wouters, Jasper; Häusel, Jessica; Tuncer, Eylül; Zingg, Daniel; Veen, Dominiek; John, Nessy; Balz, Marcel; Levesque, Mitchell P; Basler, Konrad; Aerts, Stein; Zamboni, Nicola; Dummer, Reinhard; Sommer, Lukas (2019). Yin Yang 1 Orchestrates a Metabolic Program Required for Both Neural Crest Development and Melanoma Formation. Cell Stem Cell, 24(4):637-653.e9.

Shokri, Leila; Inukai, Sachi; Hafner, Antonina; Weinand, Kathryn; Hens, Korneel; Vedenko, Anastasia; Gisselbrecht, Stephen S; Dainese, Riccardo; Bischof, Johannes; Furger, Edy; Feuz, Jean-Daniel; Basler, Konrad; Deplancke, Bart; Bulyk, Martha L (2019). A Comprehensive Drosophila melanogaster Transcription Factor Interactome. Cell Reports, 27(3):955-970.e7.

Cianciolo Cosentino, Chiara; Berto, Alessandro; Pelletier, Stéphane; Hari, Michelle; Loffing, Johannes; Neuhauss, Stephan C F; Doye, Valérie (2019). Moderate Nucleoporin 133 deficiency leads to glomerular damage in zebrafish. Scientific Reports, 9:4750.

Caviglia, Sara; Flores-Benitez, David; Lattner, Johanna; Luschnig, Stefan; Brankatschk, Marko (2019). Rabs on the fly: functions of Rab GTPases during development. Small GTPases, 10(2):89-98.

Fiume, Marc; Cupak, Miroslav; Keenan, Stephen; Rambla, Jordi; de la Torre, Sabela; Dyke, Stephanie O M; Brookes, Anthony J; Carey, Knox; Lloyd, David; Goodhand, Peter; Haeussler, Maximilian; Baudis, Michael; Stockinger, Heinz; Dolman, Lena; Lappalainen, Ilkka; Törnroos, Juha; Linden, Mikael; Spalding, J Dylan; Ur-Rehman, Saif; Page, Angela; Flicek, Paul; Sherry, Stephen; Haussler, David; Varma, Susheel; Saunders, Gary; Scollen, Serena (2019). Federated discovery and sharing of genomic data using Beacons. Nature Biotechnology, 37(3):220-224.

Delvendahl, Igor; Müller, Martin (2019). Homeostatic plasticity—a presynaptic perspective. Current Opinion in Neurobiology, 54:155-162.

Soneson, Charlotte; Love, Michael I; Patro, Rob; Hussain, Shobbir; Malhotra, Dheeraj; Robinson, Mark D (2019). A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs. Life Science Alliance, 2(1):e201800175.

Liu, Minghua; Heimlicher, Maria B; Bächler, Mirjam; Ibeneche-Nnewihe, Chieze C; Florin, Ernst-Ludwig; Brunner, Damian; Hoenger, Andreas (2019). Glucose starvation triggers filamentous septin assemblies in anS. pombeseptin-2 deletion mutant. Biology Open, 8(1):bio037622.

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Simigdala, Nikiana. A high-throughput strategy for the discovery of novel compartment-specific genes in the drosophila wing imaginal disc. 2013, University of Zurich, Faculty of Science.

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Radermacher, Pablo Till. Coping with temperature change during drosophila melanogaster development: The role of O-GlcNAc modification. 2013, University of Zurich, Faculty of Science.

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Imelli, Nicola. Endocytosis of Species C Adenovirus : much more complex than just clathrin mediated endocytosis. 2011, University of Zurich, Faculty of Science.

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Lohse, Ines. Elucidating the role of hypoxia-protective gene CPT1C in cell biology and carcinogenesis. 2011, University of Zurich, Faculty of Science.

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Armbruster, K. Genetic Control of Epithelial Tube Expansion in Drosophila melanogaster. 2011, University of Zurich, Faculty of Science.

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Schmid, Fabian. Identification and treatment of splice defects in ciliary genes RPGR and BBS1 causing Retinitis pigmentosa. 2011, University of Zurich, Faculty of Science.

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Damjanović, Marlen. Influence of dietary fat content on vascular reactivity and expression profiles: novel role of vascular Cyp2E1. 2011, University of Zurich, Faculty of Science.

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Bogan, E. The stochastic process of life and death as ruled by APE-1. 2010, University of Zurich, Faculty of Science.

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Butschi, A. Lectin-warfare between nematode and fungi : a conserved defense strategy modelled in Caenorhabditis elegans. 2010, University of Zurich, Faculty of Science.

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Minocha, S. A role of Pox neuro in the developing Drosophila brain : determination of large-field neurons essential for ellipsoid body formation and of ventral projection neurons. 2010, University of Zurich, Faculty of Science.

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Tanner, Gaby-Gerda. Alternative splicing of genes associated with retinitis pigmentosa - pathogenic mechanisms and therapeutic approaches. 2010, University of Zurich, Faculty of Science.

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Schaufelberger, S. Contribution of estrogen and its metabolites in the pathophysiology and biology of neurodegenerative disorders: role of estradiol-receptors and -metabolism. 2010, ETH Zuerich, Faculty of Science.

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Weiss, Manuel. Evolution of protein abundances in eukaryotes. 2010, University of Zurich, Faculty of Science.

Gesemann, M; Maurer, C M; Neuhauss, S C F (2010). Excitatory amino acid transporters in the zebrafish: Letter to "Expression and functional analysis of Na(+)-dependent glutamate transporters from zebrafish brain" from Rico et al. Brain Research Bulletin, 83(5):202-206.

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van Loon, Barbara. Faithful DNA repair of 7,8-dihydro-8-oxo-guanine lesions by human enzymes. 2010, University of Zurich, Faculty of Science.

Hödl, M. Genetic analysis of histone 3 and its posttranslational modifications in D. melanogaster. 2010, University of Zurich, Faculty of Science.

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Günther, Viola. Molecular mechanisms of heavy metal homeostasis in flies and humans. 2010, University of Zurich, Faculty of Science.

Schaufelberger, S. Neuroprotective actions of estradiol: Potential role of estradiol receptors and metablism. 2010, University of Zurich, Faculty of Science.

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Bätz, Tilmann. Role of the Apical Extracellular Matrix in Epithelial Morphogenesis and Size Control in Drosophila. 2010, University of Zurich, Faculty of Science.

Waechter, Vanessa. Role of the lipoxin A4 receptor in inflammation. 2010, University of Zurich, Faculty of Science.

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Weiss, M; Schrimpf, S; Hengartner, M O; Lercher, M J; von Mering, C (2010). Shotgun proteomics data from multiple organisms reveals remarkable quantitative conservation of the eukaryotic core proteome. Proteomics, 10(6):1297-1306.

Domanitskaya, E; Wacker, Z; Mauti, O; Baeriswyl, T; Esteve, P; Bovolenta, Z; Stoeckli, E T (2010). Sonic hedgehog guides post-crossing commissural axons both directly and indirectly by regulating Wnt activity. Journal of Neuroscience, 30(33):11167-11176.

Kelemen, J Z; Ratna, P; Scherrer, S; Becskei, A (2010). Spatial epigenetic control of mono- and bistable gene expression. PLoS Biology, 8(3):e1000332.

Spengler, S; Schönherr, N; Binder, G; Wollmann, H; Fricke-Otto, S; Mühlenberg, R; Denecke, B; Baudis, Michael; Eggermann, T (2010). Submicroscopic chromosomal imbalances in idiopathic Silver-Russell syndrome (SRS): the SRS phenotype overlaps with the 12q14 microdeletion syndrome. Journal of Medical Genetics, 47(5):356-360.

Sun, L; Becskei, A (2010). Systems biology: The cost of feedback control. Nature, 467(7312):163-164.

Steiger, D; Fetchko, M; Vardanyan, A; Atanesyan, L; Steiner, K; Turski, M L; Thiele, D J; Georgiev, O; Schaffner, W (2010). The Drosophila copper transporter Ctr1C functions in male fertility. The Journal of Biological Chemistry, 285(22):17089-17097.

Cabello, J; Neukomm, L J; Günesdogan, U; Burkart, K; Charette, S J; Lochnit, G; Hengartner, M O; Schnabel, R (2010). The Wnt pathway controls cell death engulfment, spindle orientation, and migration through CED-10/Rac. PLoS Biology, 8(2):e1000297.

Endt, K; Stecher, B; Chaffron, S; Slack, E; Tchitchek, N; Benecke, A; Van Maele, L; Sirard, J-C; Mueller, A J; Heikenwalder, M; Macpherson, A J; Strugnell, R; von Mering, C; Hardt, W-D (2010). The microbiota mediates pathogen clearance from the gut lumen after non-typhoidal Salmonella diarrhea. PLoS Pathogens, 6(9):e1001097.

Chaffron, Samuel. Tracing microbes and their genes through the environment: diversity, ecology and evolution. 2010, University of Zurich, Faculty of Science.

Bonde, Anne-Katrine. Tumor associated macrophages regulate epithelial to mesenchymal transition in tumor cells in a TGF-β dependent manner. 2010, University of Zurich, Faculty of Science.