Items where Subject is "07 Faculty of Science > Institute of Molecular Life Sciences"

Zurkirchen, Luis; Varum, Sandra; Giger, Sonja; Klug, Annika; Häusel, Jessica; Bossart, Raphaël; Zemke, Martina; Cantù, Claudio; Atak, Zeynep Kalender; Zamboni, Nicola; Basler, Konrad; Sommer, Lukas (2019). Yin Yang 1 sustains biosynthetic demands during brain development in a stage-specific manner. Nature Communications, 10:2192.

Jawaid, Ali; Woldemichael, Bisrat T; Kremer, Eloïse A; Laferriere, Florent; Gaur, Niharika; Afroz, Tariq; Polymenidou, Magdalini; Mansuy, Isabelle M (2019). Memory decline and its reversal in aging and neurodegeneration involve miR-183/96/182 biogenesis. Molecular Neurobiology, 56(5):3451-3462.

Villani, Ambra; Benjaminsen, Jørgen; Moritz, Christian; Henke, Katrin; Hartmann, Jonas; Norlin, Nils; Richter, Kerstin; Schieber, Nicole L; Franke, Tilman; Schwab, Yannick; Peri, Francesca (2019). Clearance by Microglia Depends on Packaging of Phagosomes into a Unique Cellular Compartment. Developmental Cell, 49(1):77-88.e7.

Varum, Sandra; Baggiolini, Arianna; Zurkirchen, Luis; Atak, Zeynep Kalender; Cantù, Claudio; Marzorati, Elisa; Bossart, Raphaël; Wouters, Jasper; Häusel, Jessica; Tuncer, Eylül; Zingg, Daniel; Veen, Dominiek; John, Nessy; Balz, Marcel; Levesque, Mitchell P; Basler, Konrad; Aerts, Stein; Zamboni, Nicola; Dummer, Reinhard; Sommer, Lukas (2019). Yin Yang 1 Orchestrates a Metabolic Program Required for Both Neural Crest Development and Melanoma Formation. Cell Stem Cell, 24(4):637-653.e9.

Cianciolo Cosentino, Chiara; Berto, Alessandro; Pelletier, Stéphane; Hari, Michelle; Loffing, Johannes; Neuhauss, Stephan C F; Doye, Valérie (2019). Moderate Nucleoporin 133 deficiency leads to glomerular damage in zebrafish. Scientific Reports, 9:4750.

Caviglia, Sara; Flores-Benitez, David; Lattner, Johanna; Luschnig, Stefan; Brankatschk, Marko (2019). Rabs on the fly: functions of Rab GTPases during development. Small GTPases, 10(2):89-98.

Doumpas, Nikolaos; Lampart, Franziska; Robinson, Mark D; Lentini, Antonio; Nestor, Colm E; Cantù, Claudio; Basler, Konrad (2019). TCF/LEF dependent and independent transcriptional regulation of Wnt/β-catenin target genes. EMBO Journal Online, 38(2):e98873.

Szklarczyk, Damian; Gable, Annika L; Lyon, David; Junge, Alexander; Wyder, Stefan; Huerta-Cepas, Jaime; Simonovic, Milan; Doncheva, Nadezhda T; Morris, John H; Bork, Peer; Jensen, Lars J; von Mering, Christian (2019). STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets. Nucleic Acids Research, 47(D1):D607-D613.

Huerta-Cepas, Jaime; Szklarczyk, Damian; Heller, Davide; Hernández-Plaza, Ana; Forslund, Sofia K; Cook, Helen; Mende, Daniel R; Letunic, Ivica; Rattei, Thomas; Jensen, Lars J; von Mering, Christian; Bork, Peer (2019). eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses. Nucleic Acids Research, 47(D1):D309-D314.

Villani, Ambra; Peri, Francesca (2019). Microglia: Picky Brain Eaters. Developmental Cell, 48(1):3-4.

Gemünden, Michèle. Identification of novel fission yeast cell polarity regulators by mass spectrometry of detergent-resistant membranes. 2019, University of Zurich, Faculty of Science.

Zang, Jingjing; Neuhauss, Stephan C F (2018). The Binding Properties and Physiological Functions of Recoverin. Frontiers in Molecular Neuroscience, 11:473.

Baillon, Ludovic; Germani, Federico; Rockel, Claudia; Hilchenbach, Jochen; Basler, Konrad (2018). Xrp1 is a transcription factor required for cell competition-driven elimination of loser cells. Scientific Reports, 8(1):17712.

Deemyad, Tara; Lüthi, Joel; Spruston, Nelson (2018). Astrocytes integrate and drive action potential firing in inhibitory subnetworks. Nature Communications, 9(1):4336.

Tackmann, Janko; Arora, Natasha; Schmidt, Thomas Sebastian Beedikt; Rodrigues, João Frederico Matias; von Mering, Christian (2018). Ecologically informed microbial biomarkers and accurate classification of mixed and unmixed samples in an extensive cross-study of human body sites. Microbiome, 6:192.

Dyke, Stephanie O M; Linden, Mikael; Lappalainen, Ilkka; De Argila, Jordi Rambla; et al; Baudis, Michael (2018). Registered access: authorizing data access. European Journal of Human Genetics, 26(12):1721-1731.

Berchtold, Doris; Battich, Nico; Lucas, Pelkmans (2018). A Systems-Level Study Reveals Regulators of Membrane-less Organelles in Human Cells. Molecular Cell, 72(6):1035-1049.

Yakimovich, Artur; Witte, Robert; Andriasyan, Vardan; Georgi, Fanny; Greber, Urs F (2018). Label-Free Digital Holo-tomographic Microscopy Reveals Virus-Induced Cytopathic Effects in Live Cells. mSphere, 3(6):e00599-18.

Germani, Federico; Hain, Daniel; Sternlicht, Denise; Moreno, Eduardo; Basler, Konrad (2018). The Toll pathway inhibits tissue growth and regulates cell fitness in an infection-dependent manner. eLife, 7:e39939.

Cantù, Claudio; Felker, Anastasia; Zimmerli, Dario; Prummel, Karin D; Cabello, Elena M; Chiavacci, Elena; Méndez-Acevedo, Kevin M; Kirchgeorg, Lucia; Burger, Sibylle; Ripoll, Jorge; Valenta, Tomas; Hausmann, George; Vilain, Nathalie; Aguet, Michel; Burger, Alexa; Panáková, Daniela; Basler, Konrad; Mosimann, Christian (2018). Mutations in and genes cause congenital heart defects by tissue-specific perturbation of Wnt/β-catenin signaling. Genes and Development, 32(21-22):1443-1458.

Krishnaswamy, Smita; Zivanovic, Nevena; Sharma, Roshan; Pe’er, Dana; Bodenmiller, Bernd (2018). Learning time-varying information flow from single-cell epithelial to mesenchymal transition data. PLoS ONE, 13(10):e0203389.

Carrio-Cordo, Paula; Baudis, Michael (2018). Mountains and Chasms: Surveying the Oncogenomic Publication Landscape. Oncology:Epub ahead of print.

Popovic, Doris; Koch, Birgit; Kueblbeck, Moritz; Ellenberg, Jan; Pelkmans, Lucas (2018). Multivariate Control of Transcript to Protein Variability in Single Mammalian Cells. Cell Systems, 7(4):398-411.

Daga, Neha; Eicher, Simone; Kannan, Abhilash; Casanova, Alain; Low, Shyan H; Kreibich, Saskia; Andritschke, Daniel; Emmenlauer, Mario; Jenkins, Jeremy L; Hardt, Wolf-Dietrich; Greber, Urs F; Dehio, Christoph; von Mering, Christian (2018). Growth-restricting effects of siRNA transfections: a largely deterministic combination of off-target binding and hybridization-independent competition. Nucleic Acids Research, 46(18):9309-9320.

Kirchgeorg, Lucia; Felker, Anastasia; van Oostrom, Marek; Chiavacci, Elena; Mosimann, Christian (2018). Cre/lox-controlled spatiotemporal perturbation of FGF signaling in zebrafish. Developmental Dynamics, 247(10):1146-1159.

Bischof, Johannes; Duffraisse, Marilyne; Furger, Edy; Ajuria, Leiore; Giraud, Guillaume; Vanderperre, Solene; Paul, Rachel; Björklund, Mikael; Ahr, Damien; Ahmed, Alexis W; Spinelli, Lionel; Brun, Christine; Basler, Konrad; Merabet, Samir (2018). Generation of a versatile BiFC ORFeome library for analyzing protein-protein interactions in live. eLife, 7:e38853.

Cook, Helen Victoria; Doncheva, Nadezhda Tsankova; Szklarczyk, Damian; von Mering, Christian; Jensen, Lars Juhl (2018). Viruses.STRING: A Virus-Host Protein-Protein Interaction Database. Viruses, 10(10):519.

Roulin, Pascal S; Murer, Luca; Greber, Urs F (2018). A single point mutation in the rhinovirus 2B protein reduces the requirement for phosphatidylinositol 4-kinase class 3beta in viral replication. Journal of Virology, 92(23):e01462-18.

Gut, Gabriele; Herrmann, Markus D; Pelkmans, Lucas (2018). Multiplexed protein maps link subcellular organization to cellular state. Science, 361(6401):eaar7042.

Dona, Margo; Slijkerman, Ralph; Lerner, Kimberly; Broekman, Sanne; Wegner, Jeremy; Howat, Taylor; Peters, Theo; Hetterschijt, Lisette; Boon, Nanda; de Vrieze, Erik; Sorusch, Nasrin; Wolfrum, Uwe; Kremer, Hannie; Neuhauss, Stephan; Zang, Jingjing; Kamermans, Maarten; Westerfield, Monte; Phillips, Jennifer; van Wijk, Erwin (2018). Usherin defects lead to early-onset retinal dysfunction in zebrafish. Experimental Eye Research, 173:148-159.

Neuhauss, Stephan C F (2018). Sensory Biology: How to Structure a Tailor-Made Retina. Current Biology, 28(13):R737-R739.

Rai, Arpan Kumar; Chen, Jia-Xuan; Selbach, Matthias; Pelkmans, Lucas (2018). Kinase-controlled phase transition of membraneless organelles in mitosis. Nature, 559:211-216.

Zingg, Daniel; Debbache, Julien; Peña-Hernández, Rodrigo; Antunes, Ana T; Schaefer, Simon M; Cheng, Phil F; Zimmerli, Dario; Haeusel, Jessica; Calçada, Raquel R; Tuncer, Eylul; Zhang, Yudong; Bossart, Raphaël; Wong, Kwok-Kin; Basler, Konrad; Dummer, Reinhard; Santoro, Raffaella; Levesque, Mitchell P; Sommer, Lukas (2018). EZH2-mediated primary cilium deconstruction drives metastatic melanoma formation. Cancer Cell, 34(1):69-84.

Marrero-Rodríguez, Daniel; Taniguchi-Ponciano, Keiko; Subramaniam, Malayannan; Hawse, John R; Pitel, Kevin S; Arreola-De la Cruz, Hugo; Huerta-Padilla, Victor; Ponce-Navarrete, Gustavo; Figueroa-Corona, Ma Del Pilar; Gomez-Virgilio, Laura; Martinez-Cuevas, Teresa I; Mendoza-Rodriguez, Monica; Rodriguez-Esquivel, Miriam; Romero-Morelos, Pablo; Ramirez-Salcedo, Jorge; Baudis, Michael; Meraz-Rios, Marco; Jimenez-Vega, Florinda; Salcedo, Mauricio (2018). Krüppel-Like Factor 10 participates in cervical cancer immunoediting through transcriptional regulation of Pregnancy-Specific Beta-1 Glycoproteins. Scientific Reports, 8(1):9445.

Berger, Simon; Lattmann, Evelyn; Aegerter-Wilmsen, Tinri; Hengartner, Michael; Hajnal, Alex; deMello, Andrew; Casadevall I Solvas, Xavier (2018). Correction: Long-term C. elegans immobilization enables high resolution developmental studies in vivo. Lab on a chip, 18(12):1802.

Degirmenci, Bahar; Valenta, Tomas; Dimitrieva, Slavica; Hausmann, George; Basler, Konrad (2018). GLI1-expressing mesenchymal cells form the essential Wnt-secreting niche for colon stem cells. Nature, 558(7710):449-453.

Merks, Anne Margarete; Swinarski, Marie; Meyer, Alexander Matthias; Müller, Nicola Victoria; Özcan, Ismail; Donat, Stefan; Burger, Alexa; Gilbert, Stephen; Mosimann, Christian; Abdelilah-Seyfried, Salim; Panáková, Daniela (2018). Planar cell polarity signalling coordinates heart tube remodelling through tissue-scale polarisation of actomyosin activity. Nature Communications, 9(1):2161.

Ros, Oriol; Barrecheguren, Pablo José; Cotrufo, Tiziana; Schaettin, Martina; Roselló-Busquets, Cristina; Vílchez-Acosta, Alba; Hernaiz-Llorens, Marc; Martínez-Marmol, Ramón; Ulloa, Fausto; Stoeckli, Esther T; Araújo, Sofia J; Soriano, Eduardo (2018). A conserved role for Syntaxin-1 in pre- and post-commissural midline axonal guidance in fly, chick, and mouse. PLoS Genetics, 14(6):e1007432.

Spletter, Maria L; Barz, Christiane; Yeroslaviz, Assa; Zhang, Xu; Lemke, Sandra B; Bonnard, Adrien; Brunner, Erich; Cardone, Giovanni; Basler, Konrad; Habermann, Bianca H; Schnorrer, Frank (2018). A transcriptomics resource reveals a transcriptional transition during ordered sarcomere morphogenesis in flight muscle. eLife, 7:e34058.

Felker, Anastasia; Prummel, Karin D; Merks, Anne M; Mickoleit, Michaela; Brombacher, Eline C; Huisken, Jan; Panáková, Daniela; Mosimann, Christian (2018). Continuous addition of progenitors forms the cardiac ventricle in zebrafish. Nature Communications, 9(1):2001.

Eberle, Patric; Höller, Christian; Müller, Philipp; Suomalainen, Maarit; Greber, Urs F; Eghlidi, Hadi; Poulikakos, Dimos (2018). Single entity resolution valving of nanoscopic species in liquids. Nature Nanotechnology, 13(7):578-582.

Stoeckli, Esther T (2018). Understanding axon guidance: are we nearly there yet? Development, 145(10):dev151415.

Chevrier, Stéphane; Crowell, Helena L; Zanotelli, Vito RT; Engler, Stefanie; Robinson, Mark D; Bodenmiller, Bernd (2018). Compensation of Signal Spillover in Suspension and Imaging Mass Cytometry. Cell Systems, 6(5):612-620.e5.

Berger, Simon; Lattmann, Evelyn; Aegerter-Wilmsen, Tinri; Hengartner, Michael; Hajnal, Alex; deMello, Andrew; Casadevall i Solvas, Xavier (2018). Long-term C. elegans immobilization enables high resolution developmental studies in vivo. Lab on a chip, 18(9):1359-1368.

Haug, Marion F; Gesemann, Matthias; Berger, Manuela; Neuhauss, Stephan C F (2018). Phylogeny and distribution of protein kinase C variants in the zebrafish. Journal of Comparative Neurology, 526(7):1097-1109.

Chaurasia, Soumya; Lehner, Christian F (2018). Dynamics and control of sister kinetochore behavior during the meiotic divisions in Drosophila spermatocytes. PLoS Genetics, 14(5):e1007372.

Oprea, Tudor I; Bologa, Cristian G; Brunak, Søren; et al; von Mering, Christian (2018). Unexplored therapeutic opportunities in the human genome. Nature Reviews. Drug Discovery, 17(5):317-332.

Witte, Robert; Andriasyan, Vardan; Georgi, Fanny; Yakimovich, Artur; Greber, Urs F (2018). Concepts in Light Microscopy of Viruses. Viruses, 10(4):E202.

Zimmerli, Dario; Cecconi, Virginia; Valenta, Tomas; Hausmann, George; Cantù, Claudio; Restivo, Gaetana; Hafner, Jürg; Basler, Konrad; van den Broek, Maries (2018). WNT ligands control initiation and progression of human papillomavirus-driven squamous cell carcinoma. Oncogene, 37(27):3753-3762.

Schulz, Daniel; Zanotelli, Vito Riccardo Tomaso; Fischer, Jana Raja; Schapiro, Denis; Engler, Stefanie; Lun, Xiao-Kang; Jackson, Hartland Warren; Bodenmiller, Bernd (2018). Correction: Simultaneous Multiplexed Imaging of mRNA and Proteins with Subcellular Resolution in Breast Cancer Tissue Samples by Mass Cytometry. Cell Systems, 6(4):531.

Pelissier Vatter, Fanny A; Schapiro, Denis; Chang, Hang; Borowsky, Alexander D; Lee, Jonathan K; Parvin, Bahram; Stampfer, Martha R; LaBarge, Mark A; Bodenmiller, Bernd; Lorens, James B (2018). High-Dimensional Phenotyping Identifies Age-Emergent Cells in Human Mammary Epithelia. Cell Reports, 23(4):1205-1219.

Catena, Raúl; Montuenga, Luis M; Bodenmiller, Bernd (2018). Ruthenium counterstaining for imaging mass cytometry. Journal of Pathology, 244(4):479-484.

Wang, I-Hsuan; Burckhardt, Christoph J; Yakimovich, Artur; Greber, Urs F (2018). Imaging, Tracking and Computational Analyses of Virus Entry and Egress with the Cytoskeleton. Viruses, 10(4):1-31.

Stichling, Nicole; Suomalainen, Maarit; Flatt, Justin W; Schmid, Markus; Pacesa, Martin; Hemmi, Silvio; Jungraithmayr, Wolfgang; Maler, Mareike D; Freudenberg, Marina A; Plückthun, Andreas; May, Tobias; Köster, Mario; Fejer, György; Greber, Urs F (2018). Lung macrophage scavenger receptor SR-A6 (MARCO) is an adenovirus type-specific virus entry receptor. PLoS Pathogens, 14(3):e1006914.

Lötzerich, Mark; Roulin, Pascal S; Boucke, Karin; Witte, Robert; Georgiev, Oleg; Greber, Urs F (2018). Rhinovirus 3C protease suppresses apoptosis and triggers caspase-independent cell death. Cell Death and Disease, 9(3):272.

Lidsky, Peter V; Lukyanov, Konstantin A; Misra, Tvisha; Handke, Björn; Mishin, Alexander S; Lehner, Christian F (2018). A genetically encoded fluorescent probe for imaging of oxygenation gradients in living. Development, 145(4):dev156257.

Rapsomaniki, Maria Anna; Lun, Xiao-Kang; Woerner, Stefan; Laumanns, Marco; Bodenmiller, Bernd; Martínez, María Rodríguez (2018). CellCycleTRACER accounts for cell cycle and volume in mass cytometry data. Nature Communications, 9(1):632.

Naharros, Irene Ojeda; Cristian, Flavia B; Zang, Jingjing; Gesemann, Matthias; Ingham, Philip W; Neuhauss, Stephan C F; Bachmann-Gagescu, Ruxandra (2018). The ciliopathy protein TALPID3/KIAA0586 acts upstream of Rab8 activation in zebrafish photoreceptor outer segment formation and maintenance. Scientific Reports, 8:2211.

Schmid, Markus; Ernst, Patrick; Honegger, Annemarie; Suomalainen, Maarit; Zimmermann, Martina; Braun, Lukas; Stauffer, Sarah; Thom, Cristian; Dreier, Birgit; Eibauer, Matthias; Kipar, Anja; Vogel, Viola; Greber, Urs F; Medalia, Ohad; Plückthun, Andreas (2018). Adenoviral vector with shield and adapter increases tumor specificity and escapes liver and immune control. Nature Communications, 9(1):450.

de Groot, Reinoud; Lüthi, Joel; Lindsay, Helen; Holtackers, René; Pelkmans, Lucas (2018). Large-scale image-based profiling of single-cell phenotypes in arrayed CRISPR-Cas9 gene perturbation screens. Molecular Systems Biology, 14(1):e8064.

Wentzel, Corinna; Delvendahl, Igor; Sydlik, Sebastian; Georgiev, Oleg; Müller, Martin (2018). Dysbindin links presynaptic proteasome function to homeostatic recruitment of low release probability vesicles. Nature Communications:9:267.

Degirmenci, Bahar; Hausmann, George; Valenta, Tomas; Basler, Konrad (2018). Wnt Ligands as a Part of the Stem Cell Niche in the Intestine and the Liver. Progress in molecular biology and translational science, 153:1-19.

Puri, Sahil. Approaching zebrafish (Danio rerio) caudal fin regeneration from a biomechanical perspective. 2018, University of Zurich, Faculty of Science.

Strauss, Justin Eric. Characterization of genes linked to human intellectual disability through functional analyses in the developing nervous system. 2018, University of Zurich, Faculty of Science.

Asadollahi, Reza; Strauss, Justin E; Zenker, Martin; Beuing, Oliver; Edvardson, Simon; Elpeleg, Orly; Strom, Tim M; Joset, Pascal; Niedrist, Dunja; Otte, Christine; Oneda, Beatrice; Boonsawat, Paranchai; Azzarello-Burri, Silvia; Bartholdi, Deborah; Papik, Michael; Zweier, Markus; Haas, Cordula; Ekici, Arif B; Baumer, Alessandra; Boltshauser, Eugen; Steindl, Katharina; Nothnagel, Michael; Schinzel, Albert; Stoeckli, Esther T; Rauch, Anita (2018). Clinical and experimental evidence suggest a link between KIF7 and C5orf42-related ciliopathies through Sonic Hedgehog signaling. European Journal of Human Genetics, 26(2):197-209.

Heimlicher, Maria Barbara. Cytoplasmic freezing: exploring a newly discovered extreme immobilisation of the cytoplasmic content of the fission yeast Schizosaccharomyces pombe. 2018, University of Zurich, Faculty of Science.

Zimmerli, Dario. Elucidating the roles of Wnt-secretion and β-catenin's interaction partners in development and disease. 2018, University of Zurich, Faculty of Science.

Manzella, Gabriele. Exploiting precision medicine in rhabdomyosarcoma. 2018, University of Zurich, Faculty of Science.

Kamkina, Polina. Genetic and molecular characterization of new genes which influence germline apoptosis in C. elegans. 2018, University of Zurich, Faculty of Science.

Sbalzarini, Ivo F; Greber, Urs F (2018). How Computational Models Enable Mechanistic Insights into Virus Infection. In: Yamauchi, Yohei. Influenza Virus. New York, NY: Springer, 609-631.

Byczkowicz, Niklas; Ritzau-Jost, Andreas; Delvendahl, Igor; Hallermann, Stefan (2018). How to maintain active zone integrity during high-frequency transmission. Neuroscience Research, 127:61-69.

Keim, Jennifer. Interplay between different forms of synaptic plasticity at the Drosophila neuromuscular junction. 2018, University of Zurich, Faculty of Science.

Phelps, Ian G; Dempsey, Jennifer C; Grout, Megan E; Isabella, Christine R; Tully, Hannah M; Doherty, Dan; Bachmann-Gagescu, Ruxandra (2018). Interpreting the clinical significance of combined variants in multiple recessive disease genes: systematic investigation of Joubert syndrome yields little support for oligogenicity. Genetics in Medicine, 20(2):223-233.

Hock, Eva-Maria. Mechanisms of disease initation in FUS and TDP-43 proteinopathies. 2018, University of Zurich, Faculty of Science.

Staib, Matthias. Mechanisms of pavlovian aversive conditioning in human auditory cortex. 2018, University of Zurich, Faculty of Science.

D'Agati, Gianluca. Modeling of developmental and tumorigenic lesions of the zebrafish notochord. 2018, University of Zurich, Faculty of Science.

Germani, Federico; Bergantinos, Cora; Johnston, Laura A (2018). Mosaic Analysis in Drosophila. Genetics, 208(2):473-490.

Crameri, Michel; Bauer, Michael; Caduff, Nicole; Walker, Raphael; Steiner, Fiona; Franzoso, Francesca D; Gujer, Cornelia; Boucke, Karin; Kucera, Talissa; Zbinden, Andrea; Münz, Christian; Fraefel, Cornel; Greber, Urs F; Pavlovic, Jovan (2018). MxB is an interferon-induced restriction factor of human herpesviruses. Nature Communications, 9(1):1980.

Heller, Davide Martin. Network consistency applied to developmental biology and molecular evolution. 2018, University of Zurich, Faculty of Science.

Andriasyan, Vardan. Quantitative and predictive analyses of adenovirus egress from infected cells based on live cell imaging and machine learning. 2018, University of Zurich, Faculty of Science.

Schulz, Daniel; Zanotelli, Vito Riccardo Tomaso; Fischer, Jana Raja; Schapiro, Denis; Engler, Stefanie; Lun, Xiao-Kang; Jackson, Hartland Warren; Bodenmiller, Bernd (2018). Simultaneous multiplexed imaging of mRNA and proteins with subcellular resolution in breast cancer tissue samples by mass cytometry. Cell Systems, 6(1):25-36.e5.

Lun, Xiaokang. Single-cell analysis reveals protein abundance-dependent signaling network modulations. 2018, University of Zurich, Faculty of Science.

Maxeiner, Sabrina. The C. elegans RAS/MAPK and WNT signalling pathways are modified by polymorphic genes and molecular oxygen. 2018, University of Zurich, Faculty of Science.

Haag, Andrea. The CHORD containing protein CHP-1 regulates RTK/RAS/MAPK and Wnt signaling during vulval development. 2018, University of Zurich, Faculty of Science.

Soneson, Charlotte; Robinson, Mark D (2018). Towards unified quality verification of synthetic count data with countsimQC. Bioinformatics, 34(4):691-692.

Lehnherr, André. Tracing the evolutionary history of the SLC1 gene family. 2018, University of Zurich, Faculty of Science.

Degirmenci, Bahar. Wnt-secreting stem cell niche drives intestinal renewal, regeneration and cancer. 2018, University of Zurich, Faculty of Science.

Gao, Bo; Huang, Qingyao; Baudis, Michael (2018). segment_liftover : a Python tool to convert segments between genome assemblies. F1000Research, 7:319.

Ojeda Naharros, Irene; Gesemann, Matthias; Mateos, José M; Barmettler, Gery; Forbes, Austin; Ziegler, Urs; Neuhauss, Stephan C F; Bachmann-Gagescu, Ruxandra (2017). Loss-of-function of the ciliopathy protein Cc2d2a disorganizes the vesicle fusion machinery at the periciliary membrane and indirectly affects Rab8-trafficking in zebrafish photoreceptors. PLoS Genetics, 13(12):e1007150.

Omasits, Ulrich; Varadarajan, Adithi R; Schmid, Michael; Goetze, Sandra; Melidis, Damianos; Bourqui, Marc; Nikolayeva, Olga; Québatte, Maxime; Patrignani, Andrea; Dehio, Christoph; Frey, Juerg E; Robinson, Mark D; Wollscheid, Bernd; Ahrens, Christian H (2017). An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics. Genome Research, 27(12):2083-2095.

Myachina, Faina; Bosshardt, Fritz; Bischof, Johannes; Kirschmann, Moritz; Lehner, Christian F (2017). Drosophila β-Tubulin 97EF is upregulated at low temperature and stabilizes microtubules. Development, 144(24):4573-4587.

Regev, Aviv; Teichmann, Sarah A; Lander, Eric S; Amit, Ido; Benoist, Christophe; Birney, Ewan; Bodenmiller, Bernd; et al (2017). The Human Cell Atlas. eLife, 6:e27041.

Leonardi, Irina; Gerstgrasser, Alexandra; Schmidt, Thomas S B; Nicholls, Flora; Tewes, Bernhard; Greinwald, Roland; von Mering, Christian; Rogler, Gerhard; Frey-Wagner, Isabelle (2017). Preventive Trichuris suis ova (TSO) treatment protects immunocompetent rabbits from DSS colitis but may be detrimental under conditions of immunosuppression. Scientific Reports, 7(1):16500.

Sauerwald, Julia. Impacts of surrounding tissues on FGF-dependent vessel ingrowth during Drosophila airway development. 2017, University of Zurich, Faculty of Science.

Mitsiadis, Thimios A; Pagella, Pierfrancesco; Cantù, Claudio (2017). Early determination of the periodontal domain by the wnt-antagonist Frzb/Sfrp3. Frontiers in Physiology, 8:936.

Mateos, José M; Barmettler, Gery; Doehner, Jana; Ojeda Naharros, Irene; Guhl, Bruno; Neuhauss, Stephan C F; Kaech, Andres; Bachmann-Gagescu, Ruxandra; Ziegler, Urs (2017). Correlative super-resolution and electron microscopy to resolve protein localization in zebrafish retina. Journal of Visualized Experiments (Jove), 129:e56113.

Roubinet, Chantal; Tsankova, Anna; Pham, Tri Thanh; Monnard, Arnaud; Caussinus, Emmanuel; Affolter, Markus; Cabernard, Clemens (2017). Spatio-temporally separated cortical flows and spindle geometry establish physical asymmetry in fly neural stem cells. Nature Communications, 8(1):1383.

Norris, Megan L; Pauli, Andrea; Gagnon, James A; Lord, Nathan D; Rogers, Katherine W; Mosimann, Christian; Zon, Leonard I; Schier, Alexander F (2017). Toddler signaling regulates mesodermal cell migration downstream of Nodal signaling. eLife, 6:e22626.

Mackay, Alan; Burford, Anna; Carvalho, Diana; Izquierdo, Elisa; Fazal-Salom, Janat; Taylor, Kathryn R; Bjerke, Lynn; Clarke, Matthew; Vinci, Mara; Nandhabalan, Meera; Temelso, Sara; Popov, Sergey; Molinari, Valeria; Raman, Pichai; Waanders, Angela J; Han, Harry J; Gupta, Saumya; Marshall, Lynley; Zacharoulis, Stergios; Vaidya, Sucheta; Mandeville, Henry C; Bridges, Leslie R; Martin, Andrew J; Al-Sarraj, Safa; Chandler, Christopher; Ng, Ho-Keung; Li, Xingang; Mu, Kun; Trabelsi, Saoussen; Brahim, Dorra H'mida-Ben; Baudis, Michael; Jones, Chris; et al (2017). Integrated molecular meta-analysis of 1,000 pediatric high-grade and diffuse intrinsic pontine glioma. Cancer Cell, 32(4):520-537.e5.

D'Agati, Gianluca; Beltre, Rosanna; Sessa, Anna; Burger, Alexa; Zhou, Yi; Mosimann, Christian; White, Richard M (2017). A defect in the mitochondrial protein Mpv17 underlies the transparent casper zebrafish. Developmental Biology, 430(1):11-17.

Stainier, Didier Y R; Raz, Erez; Lawson, Nathan D; Ekker, Stephen C; Burdine, Rebecca D; Eisen, Judith S; Ingham, Philip W; Schulte-Merker, Stefan; Yelon, Deborah; Weinstein, Brant M; Mullins, Mary C; Wilson, Stephen W; Ramakrishnan, Lalita; Amacher, Sharon L; Neuhauss, Stephan C F; Meng, Anming; Mochizuki, Naoki; Panula, Pertti; Moens, Cecilia B (2017). Guidelines for morpholino use in zebrafish. PLoS Genetics, 13(10):e1007000.

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