Items where Subject is "07 Faculty of Science > Institute of Molecular Life Sciences"

Masek, Markus; Etard, Christelle; Hofmann, Claudia; Hülsmeier, Andreas J; Zang, Jingjing; Takamiya, Masanari; Gesemann, Matthias; Neuhauss, Stephan C F; Hornemann, Thorsten; Strähle, Uwe; Bachmann-Gagescu, Ruxandra (2022). Loss of the Bardet-Biedl protein Bbs1 alters photoreceptor outer segment protein and lipid composition. Nature Communications, 13:1282.

Baeriswyl, Thomas; Schaettin, Martina; Leoni, Simone; Dumoulin, Alexandre; Stoeckli, Esther T (2022). Endoglycan Regulates Purkinje Cell Migration by Balancing Cell-Cell Adhesion. Frontiers in Neuroscience, 16:894962.

Orjuela, Stephany; Parker, Hannah R; Sajibu, Sija; Cereatti, Fabrizio; Sauter, Matthias; Buffoli, Federico; Robinson, Mark D; Marra, Giancarlo (2022). Disentangling tumorigenesis-associated DNA methylation changes in colorectal tissues from those associated with ageing. Epigenetics, 17(6):677-694.

Tuschl, Karin; White, Richard J; Trivedi, Chintan; Valdivia, Leonardo E; Niklaus, Stephanie; Bianco, Isaac H; Dadswell, Chris; González-Méndez, Ramón; Sealy, Ian M; Neuhauss, Stephan C F; Houart, Corinne; Rihel, Jason; Wilson, Stephen W; Busch-Nentwich, Elisabeth M (2022). Loss of slc39a14 causes simultaneous manganese hypersensitivity and deficiency in zebrafish. Disease Models & Mechanisms, 15(6):Epub ahead of print.

Greber, Urs F; Suomalainen, Maarit (2022). Adenovirus Entry - Stability, Uncoating and Nuclear Import. Molecular Microbiology:Epub ahead of print.

Lattmann, Evelyn; Deng, Ting; Walser, Michael; Widmer, Patrizia; Rexha-Lambert, Charlotte; Prasad, Vibhu; Eichhoff, Ossia; Daube, Michael; Dummer, Reinhard; Levesque, Mitchell P; Hajnal, Alex (2022). A DNA replication-independent function of pre-replication complex genes during cell invasion in C. elegans. PLoS Biology, 20(2):e3001317.

Murer, Luca; Petkidis, Anthony; Vallet, Thomas; Vignuzzi, Marco; Greber, Urs F (2022). Chemical evolution of Rhinovirus identifies capsid-destabilizing mutations driving low pH-independent genome uncoating. Journal of Virology, 96(2):Epub ahead of print.

Hotz, Adriana L; Jamali, Ahmed; Rieser, Nicolas N; Niklaus, Stephanie; Aydin, Ecem; Myren‐Svelstad, Sverre; Lalla, Laetitia; Jurisch‐Yaksi, Nathalie; Yaksi, Emre; Neuhauss, Stephan C F (2022). Loss of glutamate transporter eaat2a leads to aberrant neuronal excitability, recurrent epileptic seizures, and basal hypoactivity. Glia, 70:196-214.

Spiri, Silvan; Berger, Simon; Mereu, Louisa; DeMello, Andrew; Hajnal, Alex (2022). Reciprocal EGFR signaling in the anchor cell ensures precise inter-organ connection during Caenorhabditis elegans vulval morphogenesis. Development, 149(1):Epub ahead of print.

Bauer, Michael; Gomez-Gonzalez, Alfonso; Suomalainen, Maarit; Schilling, Nicolas; Hemmi, Silvio; Greber, Urs F (2021). A viral ubiquitination switch attenuates innate immunity and triggers nuclear import of virion DNA and infection. Science Advances, 7(51):eabl7150.

Bieri, Manuela; Hendrickx, Rodinde; Bauer, Michael; Yu, Bin; Jetzer, Tania; Dreier, Birgit; Mittl, Peer R E; Sobek, Jens; Plückthun, Andreas; Greber, Urs F; Hemmi, Silvio (2021). The RGD-binding integrins αvβ6 and αvβ8 are receptors for mouse adenovirus-1 and -3 infection. PLoS Pathogens, 17(12):e1010083.

Bai, Yu; Caussinus, Emmanuel; Leo, Stefano; Bosshardt, Fritz; Myachina, Faina; Rot, Gregor; Robinson, Mark D; Lehner, Christian F (2021). A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells. BMC Genomics, 22:771.

Milosavljevic, Stefan; Kuo, Tony; Decarli, Samuele; Mohn, Lucas; Sese, Jun; Shimizu, Kentaro K; Shimizu-Inatsugi, Rie; Robinson, Mark D (2021). ARPEGGIO: Automated Reproducible Polyploid EpiGenetic GuIdance workflOw. BMC Genomics, 22:547.

Gerber, Reto; Robinson, Mark D (2021). Censcyt: censored covariates in differential abundance analysis in cytometry. BMC Bioinformatics, 22(1):235.

Garbelli, Marco; Neuhauss, Stephan C F (2021). Color vision: Parsing spectral information for opponent color vision in the fish retina. Current Biology, 31(23):R1525-R1527.

Borrelli, Costanza; Valenta, Tomas; Handler, Kristina; Vélez, Karelia; Gurtner, Alessandra; Moro, Giulia; Lafzi, Atefeh; De Vargas Roditi, Laura; Hausmann, George; Arnold, Isabelle C; Moor, Andreas E; Basler, Konrad (2021). Differential regulation of β-catenin-mediated transcription via N- and C-terminal co-factors governs identity of murine intestinal epithelial stem cells. Nature Communications, 12:1368.

Schmeing, Stephan; Robinson, Mark D (2021). ReSeq simulates realistic Illumina high-throughput sequencing data. Genome Biology, 22:67.

Sahadevan, Sonu; Hembach, Katharina M; Tantardini, Elena; Pérez-Berlanga, Manuela; Hruska-Plochan, Marian; Megat, Salim; Weber, Julien; Schwarz, Petra; Dupuis, Luc; Robinson, Mark D; De Rossi, Pierre; Polymenidou, Magdalini (2021). Synaptic FUS accumulation triggers early misregulation of synaptic RNAs in a mouse model of ALS. Nature Communications, 12(1):3027.

Greber, Urs F (2021). Two years into COVID-19 – Lessons in SARS-CoV-2 and a perspective from papers in FEBS Letters. FEBS letters, 595(23):2847-2853.

Greber, Urs F (2021). Two years into COVID‐19 – Lessons in SARS‐CoV‐2 and a perspective from papers in FEBS Letters. FEBS letters, 595(23):2847-2853.

Landínez Macías, María Paula; Urwyler, Olivier (2021). The Fine Art of Writing a Message: RNA Metabolism in the Shaping and Remodeling of the Nervous System. Frontiers in Molecular Neuroscience, 7:755686.

Jacobsen, Julius O B; Baudis, Michael; Baynam, Gareth S; Beckmann, Jacques S; Beltran, Sergi; Callahan, Tiffany J; Chute, Christopher G; Courtot, Mélanie; Danis, Daniel; Elemento, Olivier; Freimuth, Robert R; Gargano, Michael A; Groza, Tudor; Hamosh, Ada; Harris, Nomi L; Kaliyaperumal, Rajaram; Khalifa, Aly; Krawitz, Peter M; Köhler, Sebastian; Laraway, Brian J; Lehväslaiho, Heikki; Lloyd, Kent C; Matalonga, Leslie; McMurry, Julie A; Metke-Jimenez, Alejandro; Mungall, Christopher J; Munoz-Torres, Monica C; Ogishima, Soichi; Papakonstantinou, Anastasios; Piscia, Davide; et al (2021). The GA4GH Phenopacket schema: A computable representation of clinical data for precision medicine. medRxiv 21266944, University of Zurich.

Glasauer, Stella M K; Triemer, Therese; Neef, Anne B; Neuhauss, Stephan C F; Luedtke, Nathan W (2021). DNA template strand segregation in developing zebrafish. Cell Chemical Biology, 28(11):1638-1647.e4.

Rehm, Heidi L; Page, Angela J H; Smith, Lindsay; Adams, Jeremy B; Alterovitz, Gil; Babb, Lawrence J; Barkley, Maxmillian P; Baudis, Michael; Beauvais, Michael J S; Beck, Tim; Beckmann, Jacques S; Beltran, Sergi; Bernick, David; Bernier, Alexander; Bonfield, James K; Boughtwood, Tiffany F; Bourque, Guillaume; Bowers, Sarion R; Brookes, Anthony J; Brudno, Michael; Brush, Matthew H; Bujold, David; Burdett, Tony; Buske, Orion J; Cabili, Moran N; Cameron, Daniel L; Carroll, Robert J; Casas-Silva, Esmeralda; Chakravarty, Debyani; Chaudhari, Bimal P; et al (2021). GA4GH: International policies and standards for data sharing across genomic research and healthcare. Cell, 1(2):100029.

Thorogood, Adrian; Rehm, Heidi L; Goodhand, Peter; Page, Angela J H; Joly, Yann; Baudis, Michael; Rambla, Jordi; Navarro, Arcadi; Nyronen, Tommi H; Linden, Mikael; Dove, Edward S; Fiume, Marc; Brudno, Michael; Cline, Melissa S; Birney, Ewan (2021). International federation of genomic medicine databases using GA4GH standards. Cell, 1(2):100032.

Wagner, Alex H; Babb, Lawrence; Alterovitz, Gil; Baudis, Michael; Brush, Matthew; Cameron, Daniel L; Cline, Melissa; Griffith, Malachi; Griffith, Obi L; Hunt, Sarah E; Kreda, David; Lee, Jennifer M; Li, Stephanie; Lopez, Javier; Moyer, Eric; Nelson, Tristan; Patel, Ronak Y; Riehle, Kevin; Robinson, Peter N; Rynearson, Shawn; Schuilenburg, Helen; Tsukanov, Kirill; Walsh, Brian; Konopko, Melissa; Rehm, Heidi L; Yates, Andrew D; Freimuth, Robert R; Hart, Reece K (2021). The GA4GH Variation Representation Specification: A computational framework for variation representation and federated identification. Cell Genomics, 1(2):100027.

Schlegel, Domino K; Ramkumar, Srinivasagan; von Lintig, Johannes; Neuhauss, Stephan C F (2021). Disturbed retinoid metabolism upon loss of rlbp1a impairs cone function and leads to subretinal lipid deposits and photoreceptor degeneration in the zebrafish retina. eLife, 10:e71473.

Wälchli, Thomas; Bisschop, Jeroen; Miettinen, Arttu; Ulmann-Schuler, Alexandra; Hintermüller, Christoph; Meyer, Eric P; Krucker, Thomas; Wälchli, Regula; Monnier, Philippe P; Carmeliet, Peter; Vogel, Johannes; Stampanoni, Marco (2021). Hierarchical imaging and computational analysis of three-dimensional vascular network architecture in the entire postnatal and adult mouse brain. Nature Protocols, 16(10):4564-4610.

Zang, Jingjing; Gesemann, Matthias; Keim, Jennifer; Samardzija, Marijana; Grimm, Christian; Neuhauss, Stephan C F (2021). Circadian regulation of vertebrate cone photoreceptor function. eLife, 10:e68903.

Prasad, Vibhu; Greber, Urs F (2021). The endoplasmic reticulum unfolded protein response – homeostasis, cell death and evolution in virus infections. FEMS Microbiology Reviews, 45(5):Epub ahead of print.

Zang, Jingjing; Neuhauss, Stephan C F (2021). Biochemistry and physiology of zebrafish photoreceptors. Pflügers Archiv : European Journal of Physiology, 473(9):1569-1585.

Doumpas, Nikolaos; Söderholm, Simon; Narula, Smarth; Moreira, Steven; Doble, Bradley W; Cantù, Claudio; Basler, Konrad (2021). TCF/LEF regulation of the topologically associated domain ADI promotes mESCs to exit the pluripotent ground state. Cell Reports, 36(11):109705.

Landínez-Macías, María; Qi, Weihong; Bratus-Neuenschwander, Anna; Müller, Martin; Urwyler, Olivier (2021). The RNA-binding protein Musashi controls axon compartment-specific synaptic connectivity through ptp69D mRNA poly(A)-tailing. Cell Reports, 36(11):109713.

Suomalainen, Maarit; Greber, Urs F (2021). Virus Infection Variability by Single-Cell Profiling. Viruses, 13(8):1568.

Dulla, Kalyan; Slijkerman, Ralph; van Diepen, Hester C; Albert, Silvia; Dona, Margo; et al; Zang, Jingjing; Neuhauss, Stephan C F (2021). Antisense oligonucleotide-based treatment of retinitis pigmentosa caused by USH2A exon 13 mutations. Molecular Therapy, 29(8):2441-2455.

Diener, Johanna; Baggiolini, Arianna; Pernebrink, Mattias; Dalcher, Damian; Lerra, Luigi; Cheng, Phil F; Varum, Sandra; Häusel, Jessica; Stierli, Salome; Treier, Mathias; Studer, Lorenz; Basler, Konrad; Levesque, Mitchell P; Dummer, Reinhard; Santoro, Raffaella; Cantù, Claudio; Sommer, Lukas (2021). Epigenetic control of melanoma cell invasiveness by the stem cell factor SALL4. Nature Communications, 12(1):5056.

Fazilaty, Hassan; Brügger, Michael David; Valenta, Tomas; Szczerba, Barbara M; Berkova, Linda; Doumpas, Nikolaos; Hausmann, George; Scharl, Michael; Basler, Konrad (2021). Tracing colonic embryonic transcriptional profiles and their reactivation upon intestinal damage. Cell Reports, 36(5):109484.

Berger, Simon; Spiri, Silvan; deMello, Andrew; Hajnal, Alex (2021). Microfluidic-based imaging of complete Caenorhabditis elegans larval development. Development, 148(18):online.

Masek, Markus; Etard, Christelle; Hofmann, Claudia; Hülsmeier, Andreas J; Zang, Jingjing; Takamiya, Masanari; Gesemann, Matthias; Neuhauss, Stephan; Hornemann, Thorsten; Strähle, Uwe; Bachmann-Gagescu, Ruxandra (2021). The Bardet-Biedl protein Bbs1 controls photoreceptor outer segment protein and lipid composition. arXiv.org 452166, University of Zurich.

Kita, Katarzyna; Albergaria, Catarina; Machado, Ana S; Carey, Megan R; Müller, Martin; Delvendahl, Igor (2021). GluA4 facilitates cerebellar expansion coding and enables associative memory formation. eLife, 10:online.

Dumoulin, Alexandre; Zuñiga, Nikole R; Stoeckli, Esther T (2021). Axon guidance at the spinal cord midline-A live imaging perspective. Journal of Comparative Neurology, 529(10):2517-2538.

Zareba, Joanna; Peri, Francesca (2021). Microglial ‘fat shaming’ in development and disease. Current Opinion in Cell Biology, 73:105-109.

Höller, Christian; Schnoering, Gabriel; Eghlidi, Hadi; Suomalainen, Maarit; Greber, Urs F; Poulikakos, Dimos (2021). On-chip transporting arresting and characterizing individual nano-objects in biological ionic liquids. Science Advances, 7(27):eabd8758.

Greber, Urs F; Gomez-Gonzalez, Alfonso (2021). Adenovirus – a blueprint for gene delivery. Current Opinion in Virology, 48:49-56.

Lütge, Almut; Zyprych-Walczak, Joanna; Brykczynska Kunzmann, Urszula; Crowell, Helena L; Calini, Daniela; Malhotra, Dheeraj; Soneson, Charlotte; Robinson, Mark D (2021). CellMixS: quantifying and visualizing batch effects in single-cell RNA-seq data. Life science alliance, 4(6):e202001004.

Andriasyan, Vardan; Yakimovich, Artur; Petkidis, Anthony; Georgi, Fanny; Witte, Robert; Puntener, Daniel; Greber, Urs F (2021). Microscopy deep learning predicts virus infections and reveals mechanics of lytic-infected cells. iScience, 24(6):102543.

Huang, Ruizhu; Soneson, Charlotte; Germain, Pierre-Luc; Schmidt, Thomas S B; von Mering, Christian; Robinson, Mark D (2021). treeclimbR pinpoints the data-dependent resolution of hierarchical hypotheses. Genome Biology, 22:157.

Dmitrijeva, Marija; Kahlert, Christian R; Feigelman, Rounak; Kleiner, Rebekka L; Nolte, Oliver; Albrich, Werner C; Baty, Florent; von Mering, Christian (2021). Strain-Resolved Dynamics of the Lung Microbiome in Patients with Cystic Fibrosis. mBio, 12(2):Epub ahead of print.

Seyffert, Michael; Georgi, Fanny; Tobler, Kurt; Bourqui, Laurent; Anfossi, Michela; Michaelsen, Kevin; Vogt, Bernd; Greber, Urs F; Fraefel, Cornel (2021). The HSV-1 Transcription Factor ICP4 Confers Liquid-Like Properties to Viral Replication Compartments. International Journal of Molecular Sciences, 22(9):4447.

Viegas, Filipe O; Neuhauss, Stephan C F (2021). A Metabolic Landscape for Maintaining Retina Integrity and Function. Frontiers in Molecular Neuroscience, 14:656000.

Yusifov, Elkhan; Dumoulin, Alexandre; Stoeckli, Esther T (2021). Investigating Primary Cilia during Peripheral Nervous System Formation. International Journal of Molecular Sciences, 22(6):3176.

Baeriswyl, Thomas; Dumoulin, Alexandre; Schaettin, Martina; Tsapara, Georgia; Niederkofler, Vera; Helbling, Denise; Avilés, Evelyn; Frei, Jeannine A; Wilson, Nicole H; Gesemann, Matthias; Kunz, Beat; Stoeckli, Esther T (2021). Endoglycan plays a role in axon guidance by modulating cell adhesion. eLife, 10:e64767.

Brücher, Dominik; Kirchhammer, Nicole; Smith, Sheena N; Schumacher, Jatina; Schumacher, Nina; Kolibius, Jonas; Freitag, Patrick C; Schmid, Markus; Weiss, Fabian; Keller, Corina; Grove, Melanie; Greber, Urs F; Zippelius, Alfred; Plückthun, Andreas (2021). iMATCH: an integrated modular assembly system for therapeutic combination high-capacity adenovirus gene therapy. Molecular Therapy - Methods & Clinical Development, 20:572-586.

Mytils, Avishag; Kumar, Vineet; Tao, Qiu; Deis, Rachael; Levy, Karine; Masek, Markus; Eitan, Hagai; Nather, Farouq; Shawahny, Amal; Bachmann-Gagescu, Ruxandra; Roy, Sudipto; Elkouby, Yaniv M (2021). Ciliary control of meiotic chromosomal pairing mechanics and germ cell morphogenesis. bioRxiv 430249, University of Zurich.

Bottes, Sara; Jaeger, Baptiste N; Pilz, Gregor-Alexander; Jörg, David J; Cole, John Darby; Kruse, Merit; Harris, Lachlan; Korobeynyk, Vladislav I; Mallona, Izaskun; Helmchen, Fritjof; Guillemot, François; Simons, Benjamin D; Jessberger, Sebastian (2021). Long-term self-renewing stem cells in the adult mouse hippocampus identified by intravital imaging. Nature Neuroscience, 24(2):225-233.

Alon, Shahar; Goodwin, Daniel R; Sinha, Anubhav; Wassie, Asmamaw T; Chen, Fei; et al; IMAXT Consortium; Bodenmiller, Bernd; Kuett, L; Tietscher, S; Windhager, Jonas (2021). Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems. Science, 371(6528):eaax2656.

Dilshat, Ramile; Fock, Valerie; Kenny, Colin; Gerritsen, Ilse; Lasseur, Romain Maurice Jacques; Travnickova, Jana; Eichhoff, Ossia M; Cerny, Philipp; Möller, Katrin; Sigurbjörnsdóttir, Sara; Kirty, Kritika; Einarsdottir, Berglind Ósk; Cheng, Phil F; Levesque, Mitchell; Cornell, Robert A; Patton, E Elizabeth; Larue, Lionel; de Tayrac, Marie; Magnúsdóttir, Erna; Ögmundsdóttir, Margrét Helga; Steingrimsson, Eirikur (2021). MITF reprograms the extracellular matrix and focal adhesion in melanoma. eLife, 10:e63093.

Mallona, Izaskun; Ilie, Ioana Mariuca; Karemaker, Ino Dominiek; Butz, Stefan; Manzo, Massimiliano; Caflisch, Amedeo; Baubec, Tuncay (2021). Flanking sequence preference modulates de novo DNA methylation in the mouse genome. Nucleic Acids Research, 49(1):145-157.

Wang, Yuluan; Soneson, Charlotte; Malinowska, Anna L; Laski, Artur; Ghosh, Souvik; Kanitz, Alexander; Gebert, Luca F R; Robinson, Mark D; Hall, Jonathan (2021). MiR-CLIP reveals iso-miR selective regulation in the miR-124 targetome. Nucleic Acids Research, 49(1):25-37.

Chevrier, Stéphane; Zurbuchen, Yves; Cervia, Carlo; Adamo, Sarah; Raeber, Miro E; de Souza, Natalie; Sivapatham, Sujana; Jacobs, Andrea; Bachli, Esther; Rudiger, Alain; Stüssi-Helbling, Melina; Huber, Lars C; Schaer, Dominik J; Nilsson, Jakob; Boyman, Onur; Bodenmiller, Bernd (2021). A distinct innate immune signature marks progression from mild to severe COVID-19. Cell Reports Medicine, 2(1):100166.

Marin-Gonzalez, Alberto; Aicart-Ramos, Clara; Marin-Baquero, Mikel; Martín-González, Alejandro; Suomalainen, Maarit; Kannan, Abhilash; Vilhena, J G; Greber, Urs F; Moreno-Herrero, Fernando; Pérez, Rubén (2020). Double-stranded RNA bending by AU-tract sequences. Nucleic Acids Research, 48(22):12917-12928.

Brügger, Michael David; Valenta, Tomas; Fazilaty, Hassan; Hausmann, George; Basler, Konrad (2020). Distinct populations of crypt-associated fibroblasts act as signaling hubs to control colon homeostasis. PLoS Biology, 18(12):e3001032.

Cascione, Luciano; Aresu, Luca; Baudis, Michael; Bertoni, Francesco (2020). DNA Copy Number Changes in Diffuse Large B Cell Lymphomas. Frontiers in Oncology, 10:584095.

Georgi, Fanny; Kuttler, Fabien; Murer, Luca; Andriasyan, Vardan; Witte, Robert; Yakimovich, Artur; Turcatti, Gerardo; Greber, Urs F (2020). A high-content image-based drug screen of clinical compounds against cell transmission of adenovirus. Scientific Data, 7(1):265.

Lang, Judith; Bohn, Patrick; Bhat, Hilal; Jastrow, Holger; Walkenfort, Bernd; Cansiz, Feyza; Fink, Julian; Bauer, Michael; Olszewski, Dominik; Greber, Urs F; et al (2020). Acid ceramidase of macrophages traps herpes simplex virus in multivesicular bodies and protects from severe disease. Nature Communications, 11:1338.

Tiberi, Simone; Robinson, Mark D (2020). BANDITS: Bayesian differential splicing accounting for sample-to-sample variability and mapping uncertainty. Genome Biology, 21:69.

de Medeiros, Gustavo; Kromm, Dimitri; Balazs, Balint; Norlin, Nils; Günther, Stefan; Izquierdo, Emiliano; Ronchi, Paolo; Komoto, Shinya; Krzic, Uros; Schwab, Yannick; Peri, Francesca; de Renzis, Stefano; Leptin, Maria; Rauzi, Matteo; Hufnagel, Lars (2020). Cell and tissue manipulation with ultrashort infrared laser pulses in light-sheet microscopy. Scientific Reports, 10:1942.

Primo, Pasquale; Meccariello, Angela; Inghilterra, Maria Grazia; Gravina, Andrea; Del Corsano, Giuseppe; Volpe, Gennaro; Sollazzo, Germano; Aceto, Serena; Robinson, Mark D; Salvemini, Marco; Saccone, Giuseppe (2020). Targeting the autosomal Ceratitis capitata transformer gene using Cas9 or dCas9 to masculinize XX individuals without inducing mutations. BMC Genetics, 21(Suppl 2):150.

Crowell, Helena L; Soneson, Charlotte; Germain, Pierre-Luc; Calini, Daniela; Collin, Ludovic; Raposo, Catarina; Malhotra, Dheeraj; Robinson, Mark D (2020). muscat detects subpopulation-specific state transitions from multi-sample multi-condition single-cell transcriptomics data. Nature Communications, 11:6077.

Germain, Pierre-Luc; Sonrel, Anthony; Robinson, Mark D (2020). pipeComp, a general framework for the evaluation of computational pipelines, reveals performant single cell RNA-seq preprocessing tools. Genome Biology, 21(1):227.

Schreier, Verena N; Loehr, Morten O; Deng, Ting; Lattmann, Evelyn; Hajnal, Alex; Neuhauss, Stephan C F; Luedtke, Nathan W (2020). Fluorescent dATP for DNA Synthesis In Vivo. ACS Chemical Biology, 15(11):2996-3003.

Gesemann, Matthias; Neuhauss, Stephan C F (2020). Selective Gene Loss of Visual and Olfactory Guanylyl Cyclase Genes Following the Two Rounds of Vertebrate-Specific Whole-Genome Duplications. Genome Biology and Evolution, 12(11):2153-2167.

Daly, James L; Simonetti, Boris; Klein, Katja; Chen, Kai-En; Williamson, Maia Kavanagh; Antón-Plágaro, Carlos; Shoemark, Deborah K; Simón-Gracia, Lorena; Bauer, Michael; Hollandi, Reka; Greber, Urs F; Horvath, Peter; Sessions, Richard B; Helenius, Ari; Hiscox, Julian A; Teesalu, Tambet; Matthews, David A; Davidson, Andrew D; Collins, Brett M; Cullen, Peter J; Yamauchi, Yohei (2020). Neuropilin-1 is a host factor for SARS-CoV-2 infection. Science, 370(6518):861-865.

Huang, Ruizhu; Soneson, Charlotte; Ernst, Felix G M; Rue-Albrecht, Kevin C; Yu, Guangchuang; Hicks, Stephanie C; Robinson, Mark D (2020). TreeSummarizedExperiment: a S4 class for data with hierarchical structure. F1000Research, 9:1246.

Salgado, David; Armean, Irina M; Baudis, Michael; et al (2020). The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research. F1000Research, 9:1229.

Suomalainen, Maarit; Prasad, Vibhu; Kannan, Abhilash; Greber, Urs F (2020). Cell-to-cell and genome-to-genome variability of adenovirus transcription tuned by the cell cycle. Journal of Cell Science:jcs.252544.

Ballesteros-Álvarez, Josué; Dilshat, Ramile; Fock, Valerie; Möller, Katrín; Karl, Ludwig; Larue, Lionel; Ögmundsdóttir, Margrét Helga; Steingrímsson, Eiríkur (2020). MITF and TFEB cross-regulation in melanoma cells. PLoS ONE, 15(9):e0238546.

Kahraman, Abdullah; Karakulak, Tülay; Szklarczyk, Damian; von Mering, Christian (2020). Pathogenic impact of transcript isoform switching in 1,209 cancer samples covering 27 cancer types using an isoform-specific interaction network. Scientific Reports, 10:14453.

Saxena, Meera; Kalathur, Ravi KR; Rubinstein, Natalia; Vettiger, Andrea; Sugiyama, Nami; Neutzner, Melanie; Coto-Llerena, Mairene; Kancherla, Venkatesh; Ercan, Caner; Piscuoglio, Salvatore; Fischer, Jonas; Fagiani, Ernesta; Cantù, Claudio; Basler, Konrad; Christofori, Gerhard (2020). A Pygopus 2-histone interaction is critical for cancer cell de-differentiation and progression in malignant breast cancer. Cancer Research, 80(17):3631-3648.

Gao, Bo; Baudis, Michael (2020). Minimum error calibration and normalization for genomic copy number analysis. Genomics, 112(5):3331-3341.

Georgi, Fanny; Andriasyan, Vardan; Witte, Robert; Murer, Luca; Hemmi, Silvio; Yu, Lisa; Grove, Melanie; Meili, Nicole; Kuttler, Fabien; Yakimovich, Artur; Turcatti, Gerardo; Greber, Urs F (2020). The FDA-approved drug Nelfinavir inhibits lytic cell-free, but not cell-associated non-lytic transmission of human adenovirus. Antimicrobial Agents and Chemotherapy, 64(9):e01002-20.

Hernando-Pérez, Mercedes; Martín-González, Natalia; Pérez-Illana, Marta; Suomalainen, Maarit; Condezo, Gabriela N; Ostapchuk, Philomena; Gallardo, José; Menéndez, Margarita; Greber, Urs F; Hearing, Patrick; de Pablo, Pedro J; San Martín, Carmen (2020). Dynamic competition for hexon binding between core protein VII and lytic protein VI promotes adenovirus maturation and entry. Proceedings of the National Academy of Sciences of the United States of America, 117(24):13699-13707.

Greber, Urs F (2020). Adenoviruses – Infection, pathogenesis and therapy. FEBS letters, 594(12):1818-1827.

Hartmann, Jonas; Wong, Mie; Gallo, Elisa; Gilmour, Darren (2020). An image-based data-driven analysis of cellular architecture in a developing tissue. eLife, 9:e55913.

Mereu, Louisa; Morf, Matthias K; Spiri, Silvan; Gutierrez, Peter; Escobar-Restrepo, Juan M; Daube, Michael; Walser, Michael; Hajnal, Alex (2020). Polarized epidermal growth factor secretion ensures robust vulval cell fate specification in Caenorhabditis elegans. Development, 147(11):dev175760.

Haller, Otto; Kochs, Georg (2020). Mx genes: host determinants controlling influenza virus infection and trans-species transmission. Human Genetics, 139(6-7):695-705.

Chambers, Joseph M; Wingert, Rebecca A (2020). New zebrafish model for monitoring proximal tubule physiology in genetic and acquired renal Fanconi syndromes. Kidney International, 97(6):1097-1099.

Malan-Müller, Stefanie; de Souza, Vladimir B C; Daniels, Willie M U; Seedat, Soraya; Robinson, Mark D; Hemmings, Sîan M J (2020). Shedding Light on the Transcriptomic Dark Matter in Biological Psychiatry: Role of Long Noncoding RNAs in D-cycloserine-Induced Fear Extinction in Posttraumatic Stress Disorder. Omics : a journal of integrative biology, 24(6):352-369.

Georgi, Fanny; Greber, Urs F (2020). The Adenovirus Death Protein – A small membrane protein controls cell lysis and disease. FEBS letters, 594(12):1861-1878.

Chen, Zhiyong; Luciani, Alessandro; Mateos, José María; Barmettler, Gery; Giles, Rachel H; Neuhauss, Stephan C F; Devuyst, Olivier (2020). Transgenic zebrafish modeling low-molecular-weight proteinuria and lysosomal storage diseases. Kidney International, 97(6):1150-1163.

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Bartnicka, Kamila Joanna. The Interplay Between Hypoxia (HIF) and Inflammation (NF-B) in Colon Cancer. 2014, University of Zurich, Faculty of Science.

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Simigdala, Nikiana. A high-throughput strategy for the discovery of novel compartment-specific genes in the drosophila wing imaginal disc. 2013, University of Zurich, Faculty of Science.

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Radermacher, Pablo Till. Coping with temperature change during drosophila melanogaster development: The role of O-GlcNAc modification. 2013, University of Zurich, Faculty of Science.

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Taneja Raychaudhuri, Nitika. Epigenetic control of centromeric Cid/CENP-A levels during spermatogenesis and development. 2013, University of Zurich, Faculty of Science.

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