Items where Subject is "07 Faculty of Science > Institute of Molecular Life Sciences"

de Medeiros, Gustavo; Kromm, Dimitri; Balazs, Balint; Norlin, Nils; Günther, Stefan; Izquierdo, Emiliano; Ronchi, Paolo; Komoto, Shinya; Krzic, Uros; Schwab, Yannick; Peri, Francesca; de Renzis, Stefano; Leptin, Maria; Rauzi, Matteo; Hufnagel, Lars (2020). Cell and tissue manipulation with ultrashort infrared laser pulses in light-sheet microscopy. Scientific Reports, 10:1942.

Cianciolo Cosentino, Chiara; Berto, Alessandro; Pelletier, Stéphane; Hari, Michelle; Loffing, Johannes; Neuhauss, Stephan C F; Doye, Valérie (2020). Author correction: Moderate Nucleoporin 133 deficiency leads to glomerular damage in zebrafish. Scientific Reports, 10(1):756.

Tsapara, Georgia; Andermatt, Irwin; Stoeckli, Esther T (2020). Gene Silencing in Chicken Brain Development. In: Sprecher, Simon G. Brain Development. Humana, New York, NY: Springer, 439-456.

Schlegel, Domino K; Glasauer, Stella M K; Mateos, José M; Barmettler, Gery; Ziegler, Urs; Neuhauss, Stephan C F (2019). A New Zebrafish Model for CACNA2D4-Dysfunction. Investigative Ophthalmology & Visual Science [IOVS], 60(15):5124-5135.

Geirsdottir, Laufey; David, Eyal; Keren-Shaul, Hadas; et al; Peri, Francesca (2019). Cross-Species Single-Cell Analysis Reveals Divergence of the Primate Microglia Program. Cell, 179(7):1609-1622.e16.

Freyre, Christophe A C; Rauher, Pascal C; Ejsing, Christer S; Klemm, Robin W (2019). MIGA2 Links Mitochondria, the ER, and Lipid Droplets and Promotes De Novo Lipogenesis in Adipocytes. Molecular Cell, 76(5):811-825.e14.

Kabakci, Zeynep; Käppeli, Simon; Cantù, Claudio; Jensen, Lasse D; König, Christiane; Toggweiler, Janine; Gentili, Christian; Ribaudo, Giovanni; Zagotto, Giuseppe; Basler, Konrad; Pinna, Lorenzo A; Cozza, Giorgio; Ferrari, Stefano (2019). Pharmacophore-guided discovery of CDC25 inhibitors causing cell cycle arrest and tumor regression. Scientific Reports, 9(1):1335.

Bauer, Michael; Flatt, Justin W; Seiler, Daria; Cardel, Bettina; Emmenlauer, Mario; Boucke, Karin; Suomalainen, Maarit; Hemmi, Silvio; Greber, Urs F (2019). The E3 Ubiquitin Ligase Mind Bomb 1 Controls Adenovirus Genome Release at the Nuclear Pore Complex. Cell Reports, 29(12):3785-3795.e8.

Heller, Davide; Szklarczyk, Damian; Mering, Christian von (2019). Tree reconciliation combined with subsampling improves large scale inference of orthologous group hierarchies. BMC Bioinformatics, 20(1):228.

Delvendahl, Igor; Kita, Katarzyna; Müller, Martin (2019). Rapid and sustained homeostatic control of presynaptic exocytosis at a central synapse. Proceedings of the National Academy of Sciences of the United States of America, 116(47):23783-23789.

Saunders, Gary; Baudis, Michael; Becker, Regina; Beltran, Sergi; Béroud, Christophe; Birney, Ewan; Brooksbank, Cath; Brunak, Søren; Van den Bulcke, Marc; Drysdale, Rachel; Capella-Gutierrez, Salvador; Flicek, Paul; Florindi, Francesco; Goodhand, Peter; Gut, Ivo; Heringa, Jaap; Holub, Petr; Hooyberghs, Jef; Juty, Nick; Keane, Thomas M; Korbel, Jan O; Lappalainen, Ilkka; Leskosek, Brane; Matthijs, Gert; Mayrhofer, Michaela Th; Metspalu, Andres; Navarro, Arcadi; Newhouse, Steven; Nyrönen, Tommi; Page, Angela; et al (2019). Leveraging European infrastructures to access 1 million human genomes by 2022. Nature Reviews. Genetics, 20(11):693-701.

Núñez-León, Daniel; Aguirre-Fernández, Gabriel; Steiner, Andrea; Nagashima, Hiroshi; Jensen, Per; Stoeckli, Esther; Schneider, Richard A; Sánchez-Villagra, Marcelo R (2019). Morphological diversity of integumentary traits in fowl domestication: Insights from disparity analysis and embryonic development. Developmental Dynamics, 248(11):1044-1058.

Heimlicher, Maria B; Bächler, Mirjam; Liu, Minghua; Ibeneche-Nnewihe, Chieze; Florin, Ernst-Ludwig; Hoenger, Andreas; Brunner, Damian (2019). Reversible solidification of fission yeast cytoplasm after prolonged nutrient starvation. Journal of Cell Science, 132(21):jcs231688.

Voigt, Fabian F; Kirschenbaum, Daniel; Platonova, Evgenia; Pagès, Stéphane; Campbell, Robert A A; Kastli, Rahel; Schaettin, Martina; Egolf, Ladan; van der Bourg, Alexander; Bethge, Philipp; Haenraets, Karen; Frézel, Noémie; Topilko, Thomas; Perin, Paola; Hillier, Daniel; Hildebrand, Sven; Schueth, Anna; Roebroeck, Alard; Roska, Botond; Stoeckli, Esther T; Pizzala, Roberto; Renier, Nicolas; Zeilhofer, Hanns Ulrich; Karayannis, Theofanis; Ziegler, Urs; Batti, Laura; Holtmaat, Anthony; Lüscher, Christian; Aguzzi, Adriano; Helmchen, Fritjof (2019). The mesoSPIM initiative: open-source light-sheet microscopes for imaging cleared tissue. Nature Methods, 16(11):1105-1108.

Robinson, Mark D; Vitek, Olga (2019). Benchmarking comes of age. Genome Biology, 20(1):205.

Greber, Urs F; Flatt, Justin W (2019). Adenovirus Entry: From Infection to Immunity. Annual Review of Virology, 6(1):annurev-virology.

Meccariello, Angela; Salvemini, Marco; Primo, Pasquale; Hall, Brantley; Koskinioti, Panagiota; Dalíková, Martina; Gravina, Andrea; Gucciardino, Michela Anna; Forlenza, Federica; Gregoriou, Maria-Eleni; Ippolito, Domenica; Monti, Simona Maria; Petrella, Valeria; Perrotta, Maryanna Martina; Schmeing, Stephan; Ruggiero, Alessia; Scolari, Francesca; Giordano, Ennio; Tsoumani, Konstantina T; Marec, František; Windbichler, Nikolai; Arunkumar, Kallare P; Bourtzis, Kostas; Mathiopoulos, Kostas D; Ragoussis, Jiannis; Vitagliano, Luigi; Tu, Zhijian; Papathanos, Philippos Aris; Robinson, Mark D; Saccone, Giuseppe (2019). Maleness-on-the-Y (MoY) orchestrates male sex determination in major agricultural fruit fly pests. Science, 365(6460):1457-1460.

Tackmann, Janko; Matias Rodrigues, João Frederico; von Mering, Christian (2019). Rapid Inference of Direct Interactions in Large-Scale Ecological Networks from Heterogeneous Microbial Sequencing Data. Cell Systems, 9(3):286-296.e8.

Knop, Janin; Spilgies, Lisanne M; Rufli, Stefanie; Reinhart, Ramona; Vasilikos, Lazaros; Yabal, Monica; Owsley, Erika; Jost, Philipp J; Marsh, Rebecca A; Wajant, Harald; Robinson, Mark D; Kaufmann, Thomas; Wong, W Wei-Lynn (2019). TNFR2 induced priming of the inflammasome leads to a RIPK1-dependent cell death in the absence of XIAP. Cell Death and Disease, 10(10):700.

Choobdar, Sarvenaz; Ahsen, Mehmet E; Crawford, Jake; Tomasoni, Mattia; Fang, Tao; Lamparter, David; Lin, Junyuan; Hescott, Benjamin; Hu, Xiaozhe; Mercer, Johnathan; Natoli, Ted; Narayan, Rajiv; von Mering, C; Subramanian, Aravind; Zhang, Jitao D; Stolovitzky, Gustavo; Kutalik, Zoltán; Lage, Kasper; Slonim, Donna K; Saez-Rodriguez, Julio; Cowen, Lenore J; Bergmann, Sven; Marbach, Daniel (2019). Assessment of network module identification across complex diseases. Nature Methods, 16(9):843-852.

Bruns, Dominique; Gawehn, Erik; Kumar, Karthiga Santhana; Schneider, Petra; Baumgartner, Martin; Schneider, Gisbert (2019). Identification of Synthetic Activators of Cancer Cell Migration by Hybrid Deep Learning. Chembiochem, 20:Epub ahead of print.

Soneson, Charlotte; Yao, Yao; Bratus-Neuenschwander, Anna; Patrignani, Andrea; Robinson, Mark D; Hussain, Shobbir (2019). A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes. Nature Communications, 10(1):3359.

Van den Berge, Koen; Hembach, Katharina M; Soneson, Charlotte; Tiberi, Simone; Clement, Lieven; Love, Michael I; Patro, Rob; Robinson, Mark D (2019). RNA Sequencing Data: Hitchhiker's Guide to Expression Analysis. Annual Review of Biomedical Data Science, 2(1):139-173.

Son, Jae Hak; Kohlbrenner, Tea; Heinze, Svenia; Beukeboom, Leo; Bopp, Daniel; Meisel, Richard P (2019). Minimal Effects of Proto-Y Chromosomes on House Fly Gene Expression in Spite of Evidence That Selection Maintains Stable Polygenic Sex Determination. Genetics, 213(1):313-327.

Orjuela, Stephany; Huang, Ruizhu; Hembach, Katharina M; Robinson, Mark D; Soneson, Charlotte (2019). ARMOR: An Automated Reproducible MOdular Workflow for Preprocessing and Differential Analysis of RNA-seq Data. G3 : Genes, Genomes, Genetics, 9(7):2089-2096.

D'Agati, Gianluca; Cabello, Elena María; Frontzek, Karl; Rushing, Elisabeth J; Klemm, Robin; Robinson, Mark D; White, Richard M; Mosimann, Christian; Burger, Alexa (2019). Active receptor tyrosine kinases, but not Brachyury, are sufficient to trigger chordoma in zebrafish. Disease Models & Mechanisms, 12(7):dmm039545.

Krattinger, Simon G; Kang, Joohyun; Bräunlich, Stephanie; Boni, Rainer; Chauhan, Harsh; Selter, Liselotte L; Robinson, Mark D; Schmid, Marc W; Wiederhold, Elena; Hensel, Goetz; Kumlehn, Jochen; Sucher, Justine; Martinoia, Enrico; Keller, Beat (2019). Abscisic acid is a substrate of the ABC transporter encoded by the durable wheat disease resistance gene Lr34. New Phytologist, 223(2):853-866.

Weber, Lukas M; Saelens, Wouter; Cannoodt, Robrecht; Soneson, Charlotte; Hapfelmeier, Alexander; Gardner, Paul P; Boulesteix, Anne-Laure; Saeys, Yvan; Robinson, Mark D (2019). Essential guidelines for computational method benchmarking. Genome Biology, 20:125.

Mariani, Samanta Antonella; Li, Zhuan; Rice, Siobhan; Krieg, Carsten; Fragkogianni, Stamatina; Robinson, Mark; Vink, Chris Sebastiaan; Pollard, Jeffrey William; Dzierzak, Elaine (2019). Pro-inflammatory Aorta-Associated Macrophages Are Involved in Embryonic Development of Hematopoietic Stem Cells. Immunity, 50(6):1439-1452.e5.

Kaiser, Julia; Maibach, Martina; Salpeter, Iris; Hagenbuch, Niels; de Souza, Vladimir B C; Robinson, Mark D; Schwab, Martin E (2019). The Spinal Transcriptome after Cortical Stroke: In Search of Molecular Factors Regulating Spontaneous Recovery in the Spinal Cord. Journal of Neuroscience, 39(24):4714-4726.

Modic, Miha; Grosch, Markus; Rot, Gregor; Schirge, Silvia; Lepko, Tjasa; Yamazaki, Tomohiro; Lee, Flora C Y; Rusha, Ejona; Shaposhnikov, Dmitry; Palo, Michael; Merl-Pham, Juliane; Cacchiarelli, Davide; Rogelj, Boris; Hauck, Stefanie M; von Mering, Christian; Meissner, Alexander; Lickert, Heiko; Hirose, Tetsuro; Ule, Jernej; Drukker, Micha (2019). Cross-Regulation between TDP-43 and Paraspeckles Promotes Pluripotency-Differentiation Transition. Molecular Cell, 74(5):951-965.e13.

Lun, Xiao-Kang; Szklarczyk, Damian; Gábor, Attila; Dobberstein, Nadine; Zanotelli, Vito Riccardo Tomaso; Saez-Rodriguez, Julio; von Mering, Christian; Bodenmiller, Bernd (2019). Analysis of the Human Kinome and Phosphatome by Mass Cytometry Reveals Overexpression-Induced Effects on Cancer-Related Signaling. Molecular Cell, 74(5):1086-1102.e5.

Brunner, Erich; Yagi, Ryohei; Debrunner, Marc; Beck-Schneider, Dezirae; Burger, Alexa; Escher, Eliane; Mosimann, Christian; Hausmann, George; Basler, Konrad (2019). CRISPR-induced double-strand breaks trigger recombination between homologous chromosome arms. Life Science Alliance, 2(3):e201800267.

Gug, G; Huang, Q; Chiticariu, E; Solovan, C; Baudis, M (2019). DNA copy number imbalances in primary cutaneous lymphomas. Journal of the European Academy of Dermatology and Venerology, 33(6):1062-1075.

Haug, Marion F; Berger, Manuela; Gesemann, Matthias; Neuhauss, Stephan C F (2019). Differential expression of PKCα and -β in the zebrafish retina. Histochemistry and Cell Biology, 151(6):521-530.

Maxeiner, Sabrina; Grolleman, Judith; Schmid, Tobias; Kammenga, Jan; Hajnal, Alex (2019). The hypoxia-response pathway modulates RAS/MAPK-mediated cell fate decisions in Caenorhabditis elegans. Life Science Alliance, 2(3):e201800255.

Bachmann-Gagescu, Ruxandra; Neuhauss, Stephan C F (2019). The photoreceptor cilium and its diseases. Current Opinion in Genetics & Development, 56:22-33.

Spalinger, Marianne R; Schmidt, Thomas S B; Schwarzfischer, Marlene; Hering, Larissa; Atrott, Kirstin; Lang, Silvia; Gottier, Claudia; Geirnaert, Annelies; Lacroix, Christophe; Dai, Xuezhi; Rawlings, David J; Chan, Andrew C; von Mering, Christian; Rogler, Gerhard; Scharl, Michael (2019). Protein tyrosine phosphatase non-receptor type 22 modulates colitis in a microbiota-dependent manner. Journal of Clinical Investigation, 129(6):2527-2541.

Wagner, Johanna; Rapsomaniki, Maria Anna; Chevrier, Stéphane; Anzeneder, Tobias; Langwieder, Claus; Dykgers, August; Rees, Martin; Ramaswamy, Annette; Muenst, Simone; Soysal, Savas Deniz; Jacobs, Andrea; Windhager, Jonas; Silina, Karina; van den Broek, Maries; Dedes, Konstantin Johannes; Rodríguez Martínez, Maria; Weber, Walter Paul; Bodenmiller, Bernd (2019). A Single-Cell Atlas of the Tumor and Immune Ecosystem of Human Breast Cancer. Cell, 177(5):1330-1345.

Zurkirchen, Luis; Varum, Sandra; Giger, Sonja; Klug, Annika; Häusel, Jessica; Bossart, Raphaël; Zemke, Martina; Cantù, Claudio; Atak, Zeynep Kalender; Zamboni, Nicola; Basler, Konrad; Sommer, Lukas (2019). Yin Yang 1 sustains biosynthetic demands during brain development in a stage-specific manner. Nature Communications, 10:2192.

Urwyler, Olivier; Izadifar, Azadeh; Vandenbogaerde, Sofie; Sachse, Sonja; Misbaer, Anke; Schmucker, Dietmar (2019). Branch-restricted localization of phosphatase Prl-1 specifies axonal synaptogenesis domains. Science, 364(6439):eaau9952.

Jawaid, Ali; Woldemichael, Bisrat T; Kremer, Eloïse A; Laferriere, Florent; Gaur, Niharika; Afroz, Tariq; Polymenidou, Magdalini; Mansuy, Isabelle M (2019). Memory decline and its reversal in aging and neurodegeneration involve miR-183/96/182 biogenesis. Molecular Neurobiology, 56(5):3451-3462.

Herzog, Chiara; Pons Garcia, Laura; Keatinge, Marcus; Greenald, David; Moritz, Christian; Peri, Francesca; Herrgen, Leah (2019). Rapid clearance of cellular debris by microglia limits secondary neuronal cell death after brain injury in vivo. Development, 146(9):dev174698.

Chatterjee, Bithi; Deng, Yun; Holler, Angelika; Nunez, Nicolas; Azzi, Tarik; Vanoaica, Liliana Danusia; Müller, Anne; Zdimerova, Hana; Antsiferova, Olga; Zbinden, Andrea; Capaul, Riccarda; Dreyer, Johannes H; Nadal, David; Becher, Burkhard; Robinson, Mark D; Stauss, Hans; Münz, Christian (2019). CD8+ T cells retain protective functions despite sustained inhibitory receptor expression during Epstein-Barr virus infection in vivo. PLoS Pathogens, 15(5):e1007748.

Sun, Michael Shoujie; Weber, Joe; Blattner, Ariane C; Chaurasia, Soumya; Lehner, Christian F (2019). MNM and SNM maintain but do not establish achiasmate homolog conjunction during Drosophila male meiosis. PLoS Genetics, 15(5):e1008162.

Cheng, Hung-Wei; Onder, Lucas; Novkovic, Mario; Soneson, Charlotte; Lütge, Mechthild; Pikor, Natalia; Scandella, Elke; Robinson, Mark D; Miyazaki, Jun-Ichi; Tersteegen, Anne; Sorg, Ursula; Pfeffer, Klaus; Rülicke, Thomas; Hehlgans, Thomas; Ludewig, Burkhard (2019). Origin and differentiation trajectories of fibroblastic reticular cells in the splenic white pulp. Nature Communications, 10(1):1739.

Villani, Ambra; Benjaminsen, Jørgen; Moritz, Christian; Henke, Katrin; Hartmann, Jonas; Norlin, Nils; Richter, Kerstin; Schieber, Nicole L; Franke, Tilman; Schwab, Yannick; Peri, Francesca (2019). Clearance by Microglia Depends on Packaging of Phagosomes into a Unique Cellular Compartment. Developmental Cell, 49(1):77-88.e7.

Varum, Sandra; Baggiolini, Arianna; Zurkirchen, Luis; Atak, Zeynep Kalender; Cantù, Claudio; Marzorati, Elisa; Bossart, Raphaël; Wouters, Jasper; Häusel, Jessica; Tuncer, Eylül; Zingg, Daniel; Veen, Dominiek; John, Nessy; Balz, Marcel; Levesque, Mitchell P; Basler, Konrad; Aerts, Stein; Zamboni, Nicola; Dummer, Reinhard; Sommer, Lukas (2019). Yin Yang 1 Orchestrates a Metabolic Program Required for Both Neural Crest Development and Melanoma Formation. Cell Stem Cell, 24(4):637-653.e9.

Shokri, Leila; Inukai, Sachi; Hafner, Antonina; Weinand, Kathryn; Hens, Korneel; Vedenko, Anastasia; Gisselbrecht, Stephen S; Dainese, Riccardo; Bischof, Johannes; Furger, Edy; Feuz, Jean-Daniel; Basler, Konrad; Deplancke, Bart; Bulyk, Martha L (2019). A Comprehensive Drosophila melanogaster Transcription Factor Interactome. Cell Reports, 27(3):955-970.e7.

Cianciolo Cosentino, Chiara; Berto, Alessandro; Pelletier, Stéphane; Hari, Michelle; Loffing, Johannes; Neuhauss, Stephan C F; Doye, Valérie (2019). Moderate Nucleoporin 133 deficiency leads to glomerular damage in zebrafish. Scientific Reports, 9:4750.

Caviglia, Sara; Flores-Benitez, David; Lattner, Johanna; Luschnig, Stefan; Brankatschk, Marko (2019). Rabs on the fly: functions of Rab GTPases during development. Small GTPases, 10(2):89-98.

Fiume, Marc; Cupak, Miroslav; Keenan, Stephen; Rambla, Jordi; de la Torre, Sabela; Dyke, Stephanie O M; Brookes, Anthony J; Carey, Knox; Lloyd, David; Goodhand, Peter; Haeussler, Maximilian; Baudis, Michael; Stockinger, Heinz; Dolman, Lena; Lappalainen, Ilkka; Törnroos, Juha; Linden, Mikael; Spalding, J Dylan; Ur-Rehman, Saif; Page, Angela; Flicek, Paul; Sherry, Stephen; Haussler, David; Varma, Susheel; Saunders, Gary; Scollen, Serena (2019). Federated discovery and sharing of genomic data using Beacons. Nature Biotechnology, 37(3):220-224.

Delvendahl, Igor; Müller, Martin (2019). Homeostatic plasticity—a presynaptic perspective. Current Opinion in Neurobiology, 54:155-162.

Soneson, Charlotte; Love, Michael I; Patro, Rob; Hussain, Shobbir; Malhotra, Dheeraj; Robinson, Mark D (2019). A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs. Life Science Alliance, 2(1):e201800175.

Liu, Minghua; Heimlicher, Maria B; Bächler, Mirjam; Ibeneche-Nnewihe, Chieze C; Florin, Ernst-Ludwig; Brunner, Damian; Hoenger, Andreas (2019). Glucose starvation triggers filamentous septin assemblies in anS. pombeseptin-2 deletion mutant. Biology Open, 8(1):bio037622.

Doumpas, Nikolaos; Lampart, Franziska; Robinson, Mark D; Lentini, Antonio; Nestor, Colm E; Cantù, Claudio; Basler, Konrad (2019). TCF/LEF dependent and independent transcriptional regulation of Wnt/β-catenin target genes. EMBO Journal Online, 38(2):e98873.

Szklarczyk, Damian; Gable, Annika L; Lyon, David; Junge, Alexander; Wyder, Stefan; Huerta-Cepas, Jaime; Simonovic, Milan; Doncheva, Nadezhda T; Morris, John H; Bork, Peer; Jensen, Lars J; von Mering, Christian (2019). STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets. Nucleic Acids Research, 47(D1):D607-D613.

Huerta-Cepas, Jaime; Szklarczyk, Damian; Heller, Davide; Hernández-Plaza, Ana; Forslund, Sofia K; Cook, Helen; Mende, Daniel R; Letunic, Ivica; Rattei, Thomas; Jensen, Lars J; von Mering, Christian; Bork, Peer (2019). eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses. Nucleic Acids Research, 47(D1):D309-D314.

Villani, Ambra; Peri, Francesca (2019). Microglia: Picky Brain Eaters. Developmental Cell, 48(1):3-4.

Greber, Urs F (2019). Editorial: Physical Virology and the Nature of Virus Infections. In: Greber, Urs F. Physical Virology. Basel, Switzerland: Springer, online.

Bick, Jochen T; Zeng, Shuqin; Robinson, Mark D; Ulbrich, Susanne E; Bauersachs, Stefan (2019). Mammalian Annotation Database for improved annotation and functional classification of Omics datasets from less well-annotated organisms. Database, 2019:86.

Nowicka, Malgorzata; Krieg, Carsten; Crowell, Helena L; Weber, Lukas M; Hartmann, Felix J; Guglietta, Silvia; Becher, Burkhard; Levesque, Mitchell P; Robinson, Mark D (2019). CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets. F1000Research, 6:748.

Weber, Lukas M; Soneson, Charlotte (2019). HDCytoData: Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats. F1000Research, 8:1459.

Gemünden, Michèle. Identification of novel fission yeast cell polarity regulators by mass spectrometry of detergent-resistant membranes. 2019, University of Zurich, Faculty of Science.

Bruns, Dominique; Merk, Daniel; Santhana Kumar, Karthiga; Baumgartner, Martin; Schneider, Gisbert (2019). Synthetic Activators of Cell Migration Designed by Constructive Machine Learning. ChemistryOpen, 8(10):1303-1308.

Weber, Lukas M; Nowicka, Malgorzata; Soneson, Charlotte; Robinson, Mark D (2019). diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering. Communications Biology, 2:183.

Zang, Jingjing; Neuhauss, Stephan C F (2018). The Binding Properties and Physiological Functions of Recoverin. Frontiers in Molecular Neuroscience, 11:473.

Baillon, Ludovic; Germani, Federico; Rockel, Claudia; Hilchenbach, Jochen; Basler, Konrad (2018). Xrp1 is a transcription factor required for cell competition-driven elimination of loser cells. Scientific Reports, 8(1):17712.

Deemyad, Tara; Lüthi, Joel; Spruston, Nelson (2018). Astrocytes integrate and drive action potential firing in inhibitory subnetworks. Nature Communications, 9(1):4336.

Tackmann, Janko; Arora, Natasha; Schmidt, Thomas Sebastian Beedikt; Rodrigues, João Frederico Matias; von Mering, Christian (2018). Ecologically informed microbial biomarkers and accurate classification of mixed and unmixed samples in an extensive cross-study of human body sites. Microbiome, 6:192.

Dyke, Stephanie O M; Linden, Mikael; Lappalainen, Ilkka; De Argila, Jordi Rambla; et al; Baudis, Michael (2018). Registered access: authorizing data access. European Journal of Human Genetics, 26(12):1721-1731.

Berchtold, Doris; Battich, Nico; Pelkmans, Lucas (2018). A Systems-Level Study Reveals Regulators of Membrane-less Organelles in Human Cells. Molecular Cell, 72(6):1035-1049.

Yakimovich, Artur; Witte, Robert; Andriasyan, Vardan; Georgi, Fanny; Greber, Urs F (2018). Label-Free Digital Holo-tomographic Microscopy Reveals Virus-Induced Cytopathic Effects in Live Cells. mSphere, 3(6):e00599-18.

Germani, Federico; Hain, Daniel; Sternlicht, Denise; Moreno, Eduardo; Basler, Konrad (2018). The Toll pathway inhibits tissue growth and regulates cell fitness in an infection-dependent manner. eLife, 7:e39939.

Parker, Hannah R; Orjuela, Stephany; Martinho Oliveira, Andreia; Cereatti, Fabrizio; Sauter, Matthias; Heinrich, Henriette; Tanzi, Giulia; Weber, Achim; Komminoth, Paul; Vavricka, Stephan; Albanese, Luca; Buffoli, Federico; Robinson, Mark D; Marra, Giancarlo (2018). The proto CpG island methylator phenotype of sessile serrated adenomas/polyps. Epigenetics, 13(10/11):1088-1105.

Cantù, Claudio; Felker, Anastasia; Zimmerli, Dario; Prummel, Karin D; Cabello, Elena M; Chiavacci, Elena; Méndez-Acevedo, Kevin M; Kirchgeorg, Lucia; Burger, Sibylle; Ripoll, Jorge; Valenta, Tomas; Hausmann, George; Vilain, Nathalie; Aguet, Michel; Burger, Alexa; Panáková, Daniela; Basler, Konrad; Mosimann, Christian (2018). Mutations in and genes cause congenital heart defects by tissue-specific perturbation of Wnt/β-catenin signaling. Genes and Development, 32(21-22):1443-1458.

Krieg, Carsten; Nowicka, Malgorzata; Guglietta, Silvia; Schindler, Sabrina; Hartmann, Felix J; Weber, Lukas M; Dummer, Reinhard; Robinson, Mark D; Levesque, Mitchell P; Becher, Burkhard (2018). Author Correction: High-dimensional single-cell analysis predicts response to anti-PD-1 immunotherapy. Nature Medicine, 24(11):1773-1775.

Krishnaswamy, Smita; Zivanovic, Nevena; Sharma, Roshan; Pe'er, Dana; Bodenmiller, Bernd (2018). Learning time-varying information flow from single-cell epithelial to mesenchymal transition data. PLoS ONE, 13(10):e0203389.

Carrio-Cordo, Paula; Baudis, Michael (2018). Mountains and Chasms: Surveying the Oncogenomic Publication Landscape. Oncology:Epub ahead of print.

Popovic, Doris; Koch, Birgit; Kueblbeck, Moritz; Ellenberg, Jan; Pelkmans, Lucas (2018). Multivariate Control of Transcript to Protein Variability in Single Mammalian Cells. Cell Systems, 7(4):398-411.

Daga, Neha; Eicher, Simone; Kannan, Abhilash; Casanova, Alain; Low, Shyan H; Kreibich, Saskia; Andritschke, Daniel; Emmenlauer, Mario; Jenkins, Jeremy L; Hardt, Wolf-Dietrich; Greber, Urs F; Dehio, Christoph; von Mering, Christian (2018). Growth-restricting effects of siRNA transfections: a largely deterministic combination of off-target binding and hybridization-independent competition. Nucleic Acids Research, 46(18):9309-9320.

Wang, Yidong; Lu, Pengfei; Wu, Bingruo; Riascos-Bernal, Dario F; Sibinga, Nicholas E S; Valenta, Tomas; Basler, Konrad; Zhou, Bin (2018). Myocardial β-Catenin-BMP2 signaling promotes mesenchymal cell proliferation during endocardial cushion formation. Journal of Molecular and Cellular Cardiology, 123:150-158.

Kirchgeorg, Lucia; Felker, Anastasia; van Oostrom, Marek; Chiavacci, Elena; Mosimann, Christian (2018). Cre/lox-controlled spatiotemporal perturbation of FGF signaling in zebrafish. Developmental Dynamics, 247(10):1146-1159.

Villiger, Lukas; Grisch-Chan, Hiu Man; Lindsay, Helen; Ringnalda, Femke; Pogliano, Chiara B; Allegri, Gabriella; Fingerhut, Ralph; Häberle, Johannes; Matos, Joao; Robinson, Mark D; Thöny, Beat; Schwank, Gerald (2018). Treatment of a metabolic liver disease by in vivo genome base editing in adult mice. Nature Medicine, 24(10):1519-1525.

Bischof, Johannes; Duffraisse, Marilyne; Furger, Edy; Ajuria, Leiore; Giraud, Guillaume; Vanderperre, Solene; Paul, Rachel; Björklund, Mikael; Ahr, Damien; Ahmed, Alexis W; Spinelli, Lionel; Brun, Christine; Basler, Konrad; Merabet, Samir (2018). Generation of a versatile BiFC ORFeome library for analyzing protein-protein interactions in live. eLife, 7:e38853.

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Spirov, A; Fahmy, K; Schneider, M; Frei, E; Noll, M; Baumgartner, S (2009). Formation of the bicoid morphogen gradient: an mRNA gradient dictates the protein gradient. Development, 136(4):605-614.

Balamurugan, K; Hua, H; Georgiev, O; Schaffner, W (2009). Mercury and cadmium trigger expression of the copper importer Ctr1B, which enables Drosophila to thrive on heavy metal-loaded food. Biological Chemistry, 390(2):109-113.

Jensen, L J; Kuhn, M; Stark, M; Chaffron, S; Creevey, C; Muller, J; Doerks, T; Julien, P; Roth, A; Simonovic, M; Bork, P; von Mering, C (2009). STRING 8--a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Research, 37(Databa):D412-D416.

Riemer, Jan; Appenzeller-Herzog, Christian; Johansson, Linda; Bodenmiller, Bernd; Hartmann-Petersen, Rasmus; Ellgaard, Lars (2009). A luminal flavoprotein in endoplasmic reticulum-associated degradation. Proceedings of the National Academy of Sciences of the United States of America, 106(35):14831-14836.

Huber, Alexandre; Bodenmiller, Bernd; Uotila, Aino; Stahl, Michael; Wanka, Stefanie; Gerrits, Bertran; Aebersold, Ruedi; Loewith, Robbie (2009). Characterization of the rapamycin-sensitive phosphoproteome reveals that Sch9 is a central coordinator of protein synthesis. Genes and Development, 23(16):1929-1943.

Schrimpf, S P; Weiss, M; Reiter, L; Ahrens, C H; Jovanovic, M; Malmström, J; Brunner, E; Mohanty, S; Lercher, M J; Hunziker, P E; Aebersold, R; von Mering, C; Hengartner, M O (2009). Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes. PLoS Biology, 7(3):e48.

Ulintz, Peter J; Yocum, Anastasia K; Bodenmiller, Bernd; Aebersold, Ruedi; Andrews, Philip C; Nesvizhskii, Alexey I (2009). Comparison of MS(2)-only, MSA, and MS(2)/MS(3) methodologies for phosphopeptide identification. Journal of Proteome Research, 8(2):887-899.

Buetti-Dinh, A; Ungricht, R; Kelemen, J Z; Shetty, C; Ratna, P; Becskei, A (2009). Control and signal processing by transcriptional interference. Molecular Systems Biology, 5:300.

Grobei, M A; Qeli, E; Brunner, E; Rehrauer, H; Zhang, R; Roschitzki, B; Basler, K; Ahrens, C H; Grossniklaus, U (2009). Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function. Genome Research, 19(10):1786-1800.

Domon, Bruno; Bodenmiller, Bernd; Carapito, Christine; Hao, Zhiqi; Huehmer, Andreas; Aebersold, Ruedi (2009). Electron transfer dissociation in conjunction with collision activation to investigate the Drosophila melanogaster phosphoproteome. Journal of Proteome Research, 8(6):2633-2639.

Smith, A. Four ways to leave the epithelium: clonal elimination in the drosophila wing disc. 2009, University of Zurich, Faculty of Science.

Picotti, Paola; Bodenmiller, Bernd; Mueller, Lukas N; Domon, Bruno; Aebersold, Ruedi (2009). Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics. Cell, 138(4):795-806.

Schwank, G. Growth regulation in the drosophila wing imaginal disc. 2009, University of Zurich, Faculty of Science.

Siegenthaler, C; Maroy, P; Hediger, M; Dübendorfer, A; Bopp, D (2009). Hormones and sex-specific transcription factors jointly control yolk protein synthesis in Musca domestica. International Journal of Evolutionary Biology, 2009:291236.