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Jigisha, Jigisha; Ly, Jeanine; Minadakis, Nikolaos; Freund, Fabian; Kunz, Lukas; Piechota, Urszula; Akin, Beyhan; Balmas, Virgilio; Ben-David, Roi; Bencze, Szilvia; Bourras, Salim; Bozzoli, Matteo; Cotuna, Otilia; Couleaud, Gilles; Cséplő, Mónika; Czembor, Paweł; Desiderio, Francesca; Dörnte, Jost; Dreiseitl, Antonín; Feechan, Angela; Gadaleta, Agata; Gauthier, Kevin; Giancaspro, Angelica; Giove, Stefania L; Handley-Cornillet, Alain; Hubbard, Amelia; Karaoglanidis, George; Kildea, Steven; Koc, Emrah; Liatukas, Žilvinas; Lopes, Marta S.; Mascher, Fabio; McCabe, Cathal; Miedaner, Thomas; Martinez-Moreno, Fernando; Nellist, Charlotte F.; Okon, Sylwia; Praz, Coraline; Sánchez-Martín, Javier; Sărăţeanu, Veronica; Schulz, Philipp; Schwartz, Natalie; Seghetta, Daniele; Solis Martel, Ignacio; Švarta, Agrita; Testempasis, Stefanos; Villegas, Dolors; Widrig, Victoria; Menardo, Fabrizio (2025). Population genomics and molecular epidemiology of wheat powdery mildew in Europe. PLoS Biology, 23(5):e3003097.
Snoeck, Simon; Johanndrees, Oliver; Nürnberger, Thorsten; Zipfel, Cyril (2025). Plant pattern recognition receptors: from evolutionary insight to engineering. Nature Reviews. Genetics, 26(4):268-278.
Siffert, Alexandra. Sugar Metabolism and Environmental Factors Shape Plant-Microbe Interactions. 2025, University of Zurich, Faculty of Science.
Hou, Xiaoyu. Downstream Signalling Pathways of LRX1-Mediated Cell Wall Integrity Sensing during Root Hair Development. 2025, University of Zurich, Faculty of Science.
Feng, Maomao. Functional Diversity and Metabolic Capabilities of Cold-Adapted Microbial Communities in the Swiss Alps. 2025, University of Zurich, Faculty of Science.
Aerni, Philipp (2025). Innovation in times of crisis: a pragmatic and inclusive approach to cope with urgent global sustainability challenges. Frontiers in Environmental Economics, 4:1498138.
Minadakis, Nikolaos; Jigisha, Jigisha; Cornetti, Luca; Kunz, Lukas; Müller, Marion C; Torriani, Stefano F F; Menardo, Fabrizio (2025). Genomic Surveillance and Molecular Evolution of Fungicide Resistance in European Populations of Wheat Powdery Mildew. Molecular Plant Pathology, 26(3):e70071.
Guérin, Amandine; Levasseur, Caroline; Herger, Aline; Renggli, Dominik; Sotiropoulos, Alexandros Georgios; Kadler, Gabor; Hou, Xiaoyu; Schaufelberger, Myriam; Meyer, Christian; Wicker, Thomas; Bigler, Laurent; Ringli, Christoph (2025). Histidine limitation alters plant development and influences the TOR network. Journal of Experimental Botany, 76(4):1085-1098.
Paszti, Sarah. Identification of Colonization Factors in $\textit{Burkholderia}$ by Applying Genome-Wide Mutant Profiling. 2025, University of Zurich, Faculty of Science.
Herold, Laura; Choi, Sera; He, Sheng Yang; Zipfel, Cyril (2025). The conserved AvrE family of bacterial effectors: functions and targets during pathogenesis. Trends in Microbiology, 33(2):184-193.
Paszti, Sarah; Biner, Olivier; Liu, Yilei; Bolli, Kim; Jeggli, Sarah Dorothy; Pessi, Gabriella; Eberl, Leo (2025). Insights into the diverse roles of the terminal oxidases in Burkholderia cenocepacia H111. Scientific Reports, 15(1):2390.
Schnyder, Anya; Kalawong, Ratchara; Eberl, Leo; Agnoli, Kirsty (2025). $Pseudomonas$ $fungipugnans$ sp. nov., a potently antifungal bacterium isolated from moss. International Journal of Systematic and Evolutionary Microbiology, 75(1):online.
Kunz, Lukas; Jigisha, Jigisha; Menardo, Fabrizio; Sotiropoulos, Alexandros G; Zbinden, Helen; Zou, Shenghao; Tang, Dingzhong; Hückelhoven, Ralph; Keller, Beat; Müller, Marion C (2025). Avirulence depletion assay: Combining R gene-mediated selection with bulk sequencing for rapid avirulence gene identification in wheat powdery mildew. PLoS Pathogens, 21(1):e1012799.
Kracik-Dyer, Elizabeth; Baroux, Célia (2025). 3D STED Imaging of Isolated Arabidopsis thaliana Nuclei. In: Baroux, Célia; Tatout, Christophe. Methods For Plant Nucleus And Chromatin Studies. New York, NY: Springer (Bücher), 263-280.
Tsutsui, Hiroki; Grossniklaus, Ueli (2025). Whole-Genome Bisulfite Sequencing with a Small Amount of DNA. In: Baroux, Célia; Tatout, Christophe. Methods for Plant Nucleus and Chromatin Studies. Humana, New York, NY: Springer (Bücher), 3-17.
Herold, Laura; Ordon, Jana; Hua, Chenlei; Kohorn, Bruce D; Nürnberger, Thorsten; DeFalco, Thomas A; Zipfel, Cyril (2025). Arabidopsis WALL-ASSOCIATED KINASES are not required for oligogalacturonide-induced signaling and immunity. Plant Cell, 37(1):koae317.
Balestrini, Raffaella; Sillo, Fabiano; Boussageon, Raphael; Wipf, Daniel; Courty, Pierre Emmanuel (2024). The hidden side of interaction: microbes and roots get together to improve plant resilience. Journal of Plant Interactions, 19(1):2323991.
Bellés-Sancho, Paula; Golaz, Daphné; Paszti, Sarah; Vitale, Alessandra; Liu, Yilei; Bailly, Aurélien; Eberl, Leo; James, Euan K; Pessi, Gabriella (2024). Tn-seq profiling reveals that NodS of the beta-rhizobium Paraburkholderia phymatum is detrimental for nodulating soybean. Communications Biology, 7(1):1706.
Chong, Wei Wen. Unravelling the molecular mechanism underlying $\textit{MEDEA}$ imprinting in $\textit{Arabidopsis thaliana}$. 2024, University of Zurich, Faculty of Science.
Ren, Jiajun; Mathew, Anugraha; Rodríguez-García, María; Kohler, Tobias; Blacque, Olivier; Linden, Anthony; Eberl, Leo; Sieber, Simon; Gademann, Karl (2024). Functional biosynthetic stereodivergence in a gene cluster via a dihydrosydnone N-oxide. Communications Chemistry, 7(1):301.
Keppler, Andreas; Roulier, Michelle; Pfeilmeier, Sebastian; Petti, Gabriella C; Sintsova, Anna; Maier, Benjamin A; Bortfeld-Miller, Miriam; Sunagawa, Shinichi; Zipfel, Cyril; Vorholt, Julia A (2024). Plant microbiota feedbacks through dose-responsive expression of general non-self response genes. Nature Plants, 11(1):74-89.
Zhai, Keran; Rhodes, Jack; Zipfel, Cyril (2024). A peptide-receptor module links cell wall integrity sensing to pattern-triggered immunity. Nature Plants, 10(12):2027-2037.
Gonçalves Dias, Márcia; Doss, Bassem; Rawat, Anamika; Siegel, Kristen R; Mahathanthrige, Tharika; Sklenar, Jan; Rodriguez Gallo, Maria Camila; Derbyshire, Paul; Dharmasena, Thakshila; Cameron, Emma; Uhrig, R Glen; Zipfel, Cyril; Menke, Frank L H; Monaghan, Jacqueline (2024). Subfamily C7 Raf‐like kinases MRK1, RAF26, and RAF39 regulate immune homeostasis and stomatal opening in Arabidopsis thaliana. New Phytologist, 244(6):2278-2294.
Goto, Yukihisa; Kadota, Yasuhiro; Mbengue, Malick; Lewis, Jennifer D; Matsui, Hidenori; Maki, Noriko; Ngou, Bruno Pok Man; Sklenar, Jan; Derbyshire, Paul; Shibata, Arisa; Ichihashi, Yasunori; Guttman, David S; Nakagami, Hirofumi; Suzuki, Takamasa; Menke, Frank L H; Robatzek, Silke; Desveaux, Darrell; Zipfel, Cyril; Shirasu, Ken (2024). The leucine-rich repeat receptor kinase QSK1 regulates PRR-RBOHD complexes targeted by the bacterial effector HopF2Pto. Plant Cell, 36(12):4932-4951.
Antunes Westmann, Cauã. Navigating Spaces of the Possible: In Vivo Genotype-Phenotype Maps of Gene Regulation. 2024, University of Zurich, Faculty of Science.
Labouyrie, Maeva Patricia. Soil Biodiversity Assessment across Europe. 2024, University of Zurich, Faculty of Science.
Desnoyer, Nicholas. The Role and Conservation of the $\textit{Cr}$RLK1L Signalling Pathway. 2024, University of Zurich, Faculty of Science.
Dierschke, Tom; Levins, Jonathan; Lampugnani, Edwin R; Ebert, Berit; Zachgo, Sabine; Bowman, John L (2024). Control of sporophyte secondary cell wall development in Marchantia by a Class II KNOX gene. Current Biology, 34(22):5213-5222.e5.
Ojosnegros, Sara; Alvarez, José Manuel; Gagliardini, Valeria; Quintanilla, Luis G; Grossniklaus, Ueli; Fernández, Helena (2024). Transcriptomic analyses in the gametophytes of the apomictic fern Dryopteris affinis. Planta, 260(5):111.
Sotiropoulos, Alexandros G; Sánchez-Martín, Javier; Widrig, Victoria; Isaksson, Jonatan; Bernasconi, Zoe; Koller, Teresa; Bearth, Giulia; Herren, Gerhard; Wicker, Thomas; Keller, Beat (2024). A fictional field case study to understand the genetic basis of host-fungal pathogen interactions using the wheat powdery mildew-wheat pathosystem. Journal of Biological Education, 58(5):1022-1034.
Bernasconi, Zoe Maria Luisa Bartolomea. Race-Specific Resistance Mechanisms and Evasion from Recognition: Insights from the Wheat-Powdery Mildew Pathosystem. 2024, University of Zurich, Faculty of Science.
McLaughlin, Sarah Ashley. Unraveling Rhizosphere Communication: Characterization of Root Exudation for Bacterial Microbiome Recruitment across Species and Environments. 2024, University of Zurich, Faculty of Science.
Rutowicz, Kinga; Lüthi, Joel; de Groot, Reinoud; Holtackers, René; Yakimovich, Yauhen; Pazmiño, Diana M; Gandrillon, Olivier; Pelkmans, Lucas; Baroux, Célia (2024). Multiscale chromatin dynamics and high entropy in plant iPSC ancestors. Journal of Cell Science, 137(20):jcs261703.
Sugi, Naoya; Calhau, Andrea R M; Jacquier, Nathanaël M A; Millan-Blanquez, Marina; Becker, Jörg D; Begcy, Kevin; Berger, Frédéric; Bousquet-Antonelli, Cécile; Bouyer, Daniel; Cai, Giampiero; Cheung, Alice Y; Coimbra, Sílvia; Denninger, Philipp; Dresselhaus, Thomas; Feijó, José A; Fowler, John E; Geelen, Danny; Grossniklaus, Ueli; Higashiyama, Tetsuya; Honys, David; Igawa, Tomoko; Ingram, Gwyneth; Jaillais, Yvon; Johnson, Mark A; Kato, Mariko; Kawachi, Miki; Kawashima, Tomokazu; Kim, Yu-Jin; Li, Hong-Ju; Mongrand, Sébastien; et al (2024). The peri-germ cell membrane: poorly characterized but key interface for plant reproduction. Nature Plants, 10(11):1607-1609.
Herold, Laura. Characterization of Receptor Kinases Involved in Plant-Pathogen Interactions. 2024, University of Zurich, Faculty of Science.
Makechemu, Moffat. Molecular Insights Into the Perception of Fungal-Derived Molecular Patterns and Its Impact on Disease Resistance. 2024, University of Zurich, Faculty of Science.
Kaufmann, Moritz. Unravelling the Impact of Chitin Soil Amendment on Plant Using Omics Technologies with Lettuce as a Model Organism. 2024, University of Zurich, Faculty of Science.
Ebenberger, Stephan P; Cakar, Fatih; Chen, Yi‐Chi; Pressler, Katharina; Eberl, Leo; Schild, Stefan (2024). The activity of the quorum sensing regulator HapR is modulated by the bacterial extracellular vesicle (BEV)‐associated protein ObfA of $Vibrio$ $cholerae$. Journal of Extracellular Vesicles, 13(9):e12507.
Moreira, Carlos J S; Escórcio, Rita; Bento, Artur; Bjornson, Marta; Herold, Laura; Tomé, Ana S; Martins, Celso; Fanuel, Mathieu; Martins, Isabel; Bakan, Benedicte; Zipfel, Cyril; Silva Pereira, Cristina (2024). Cutin-Derived Oligomers Induce Hallmark Plant Immune Responses. Journal of Experimental Botany, 75(16):5146-5161.
Leinweber, Anne; Laffont, Clémentine; Lardi, Martina; Eberl, Leo; Pessi, Gabriella; Kümmerli, Rolf (2024). RNA-Seq reveals that Pseudomonas aeruginosa mounts growth medium-dependent competitive responses when sensing diffusible cues from Burkholderia cenocepacia. Communications Biology, 7(1):995.
Snoeck, Simon; Lee, Hyun Kyung; Schmid, Marc W; Bender, Kyle W; Neeracher, Matthias J; Fernández-Fernández, Alvaro D; Santiago, Julia; Zipfel, Cyril (2024). Leveraging coevolutionary insights and AI-based structural modeling to unravel receptor–peptide ligand-binding mechanisms. Proceedings of the National Academy of Sciences of the United States of America, 121(33)::e2400862121.
Hertle, Lukas; Sevim, Semih; Zhu, Jiawei; Pustovalov, Vitaly; Veciana, Andrea; Llacer‐Wintle, Joaquin; Landers, Fabian C; Ye, Hao; Chen, Xiang‐Zhong; Vogler, Hannes; Grossniklaus, Ueli; Puigmartí‐Luis, Josep; Nelson, Bradley J; Pané, Salvador (2024). A Naturally Inspired Extrusion‐Based Microfluidic Approach for Manufacturing Tailorable Magnetic Soft Continuum Microrobotic Devices. Advanced Materials, 36(31):e2402309.
Kofler, Xeniya Valeriyivna; Grossniklaus, Ueli; Schiestl, Florian P; Frachon, Léa (2024). Uncovering genes involved in pollinator‐driven mating system shifts and selfing syndrome evolution in Brassica rapa. New Phytologist, 243(3):1220-1230.
Russo, Alessia; Alessandrini, Mattia; El Baidouri, Moaine; Frei, Daniel; Galise, Teresa Rosa; Gaidusch, Lara; Oertel, Hannah F; Garcia Morales, Sara E; Potente, Giacomo; Tian, Qin; Smetanin, Dmitry; Bertrand, Joris A M; Onstein, Renske E; Panaud, Olivier; Frey, Jürg E; Cozzolino, Salvatore; Wicker, Thomas; Xu, Shuqing; Grossniklaus, Ueli; Schlüter, Philipp M (2024). Genome of the early spider-orchid Ophrys sphegodes provides insights into sexual deception and pollinator adaptation. Nature Communications, 15(1):6308.
Chu, Jiashu. Functional Characterization and Conservation of RLCK-VII/PBL Family Members and Substrates in Land Plants. 2024, University of Zurich, Faculty of Science.
Leber, Rebecca. Genetic Diversity and Powdery Mildew Resistance of Bread Wheat Landraces. 2024, University of Zurich, Faculty of Science.
Li, Yanru. H1 Citrullination – An Atypical Modification Regulating Germline Fate in Arabidopsis. 2024, University of Zurich, Faculty of Science.
Earp, Jennifer. Structural and Functional Characterization of the Mycobacterial Siderophore Exporter MmpL4. 2024, University of Zurich, Faculty of Science.
Paganini, Leonardo. Untangling a Regulatory Network Involving a Novel Diazeniumdiolate Signal in $\textit{Pseudomonas syringae}$. 2024, University of Zurich, Faculty of Science.
Lintz, Julie; Goto, Yukihisa; Bender, Kyle W; Bchini, Raphaël; Dubrulle, Guillaume; Cawston, Euan; Zipfel, Cyril; Duplessis, Sebastien; Petre, Benjamin (2024). Genetically clustered antifungal phytocytokines and receptor protein family members cooperate to trigger plant immune signaling. Journal of Experimental Botany:Epub ahead of print.
Durney, Célien; Boussageon, Raphael; El-Mjiyad, Noureddine; Wipf, Daniel; Courty, Pierre-Emmanuel (2024). Arbuscular mycorrhizal symbiosis with Rhizophagus irregularis DAOM197198 modifies the root transcriptome of walnut trees. Mycorrhiza, 34(4):341-350.
Sun, Qing; Gilgen, Anna K; Wittwer, Raphaël; von Arx, Georg; van der Heijden, Marcel G A; Klaus, Valentin H; Buchmann, Nina (2024). Drought effects on trait space of winter wheat are independent of land management. New Phytologist, 243(2):591-606.
Oliveira, Emily M; Wittwer, Raphaël; Hartmann, Martin; Keller, Thomas; Buchmann, Nina; van der Heijden, Marcel G A (2024). Effects of conventional, organic and conservation agriculture on soil physical properties, root growth and microbial habitats in a long-term field experiment. Geoderma, 447:116927.
Kaufmann, Moritz; Li, Leilei; Van Poucke, Christof; Rhyner, Nicola; De Tender, Caroline; Uyttendaele, Mieke; Heyndrickx, Marc; Zipfel, Cyril; Pothier, Joël F; Bart, Cottyn (2024). Soil type and associated microbiomes influences chitin’s growth-promotion effect in lettuce. Phytobiomes Journal, 8(3):248-261.
Torres, Marta; Paszti, Sarah; Eberl, Leo (2024). Shedding light on bacteria–host interactions with the aid of TnSeq approaches. mBio, 15(6):e0039024.
Marash, Iftah; Leibman-Markus, Meirav; Gupta, Rupali; Israeli, Alon; Teboul, Naama; Avni, Adi; Ori, Naomi; Bar, Maya (2024). Abolishing ARF8A activity promotes disease resistance in tomato. Plant Science, 343:112064.
Romani, Facundo; Sauret-Güeto, Susanna; Rebmann, Marius; Annese, Davide; Bonter, Ignacy; Tomaselli, Marta; Dierschke, Tom; Delmans, Mihails; Frangedakis, Eftychios; Silvestri, Linda; Rever, Jenna; Bowman, John L; Romani, Ignacio; Haseloff, Jim (2024). The landscape of transcription factor promoter activity during vegetative development in Marchantia. Plant Cell, 36(6):2140-2159.
Israeli, Alon (2024). TOR coordinates cytokinin and gibberellin signals mediating development and defense. Plant, Cell & Environment, 47(2):629-650.
Mühlenbeck, Henning. Investigating the Role and Regulation of Tyrosine Phosphorylation in Plant Receptor Kinase-Based Immune Signaling. 2024, University of Zurich, Faculty of Science.
Minadakis, Nikolaos; Kaderli, Lars; Horvath, Robert; Bourgeois, Yann; Xu, Wenbo; Thieme, Michael; Woods, Daniel P; Roulin, Anne C (2024). Polygenic architecture of flowering time and its relationship with local environments in the grass Brachypodium distachyon. Genetics, 227(1):iyae042.
Peng, Ziheng; Qian, Xun; Liu, Yu; Li, Xiaomeng; Gao, Hang; An, Yining; Qi, Jiejun; Jiang, Lan; Zhang, Yiran; Chen, Shi; Pan, Haibo; Chen, Beibei; Liang, Chunling; van der Heijden, Marcel G A; Wei, Gehong; Jiao, Shuo (2024). Land conversion to agriculture induces taxonomic homogenization of soil microbial communities globally. Nature Communications, 15(1):3624.
Serra Moncadas, Lucas; Hofer, Cyrill; Bulzu, Paul-Adrian; Pernthaler, Jakob; Andrei, Adrian-Stefan (2024). Freshwater genome-reduced bacteria exhibit pervasive episodes of adaptive stasis. Nature Communications, 15(1):3421.
Horvath, Robert; Minadakis, Nikolaos; Bourgeois, Yann; Roulin, Anne C (2024). The evolution of transposable elements in Brachypodium distachyon is governed by purifying selection, while neutral and adaptive processes play a minor role. eLife, 12:RP93284.
Tyson, Jess; Radford, Paul; Lambert, Carey; Till, Rob; Huwiler, Simona G; Lovering, Andrew L; Sockett, R Elizabeth (2024). Prey killing without invasion by Bdellovibrio bacteriovorus defective for a MIDAS-family adhesin. Nature Communications, 15(1):3078.
Golaz, Daphné; Papenfuhs, Chad K; Bellés-Sancho, Paula; Eberl, Leo; Egli, Marcel; Pessi, Gabriella (2024). RNA-seq analysis in simulated microgravity unveils down-regulation of the beta-rhizobial siderophore phymabactin. npj Microgravity, 10(1):44.
Hu, Junli; Wang, Fayuan; Zhang, Junling; Guo, Liangdong; van der Heijden, Marcel G A (2024). Mycorrhizae and sustainable soil solutions. Pedosphere, 34(2):267-268.
Jia, Yangyang; van der Heijden, Marcel G A; Valzano-Held, Alain Y; Jocher, Markus; Walder, Florian (2024). Mycorrhizal fungi mitigate nitrogen losses of an experimental grassland by facilitating plant uptake and soil microbial immobilization. Pedosphere, 34(2):399-410.
Manrique, Silvia; Cavalleri, Alex; Guazzotti, Andrea; Villarino, Gonzalo H; Simonini, Sara; Bombarely, Aureliano; Higashiyama, Tetsuya; Grossniklaus, Ueli; Mizzotti, Chiara; Pereira, Ana Marta; Coimbra, Silvia; Sankaranarayanan, Subramanian; Onelli, Elisabetta; Masiero, Simona; Franks, Robert G; Colombo, Lucia (2024). HISTONE DEACETYLASE19 Controls Ovule Number Determination and Transmitting Tract Differentiation. Plant Physiology, 194(4):2117-2135.
Villena-Alemany, Cristian; Mujakić, Izabela; Fecskeová, Livia K; Woodhouse, Jason; Auladell, Adrià; Dean, Jason; Hanusová, Martina; Socha, Magdalena; Gazulla, Carlota R; Ruscheweyh, Hans-Joachim; Sunagawa, Shinichi; Silva Kavagutti, Vinicius; Andrei, Adrian-Stefan; Grossart, Hans-Peter; Ghai, Rohit; Koblížek, Michal; Piwosz, Kasia (2024). Phenology and ecological role of aerobic anoxygenic phototrophs in freshwaters. Microbiome, 12(1):65.
Koller, Teresa; Camenzind, Marcela; Jung, Esther; Brunner, Susanne; Herren, Gerhard; Armbruster, Cygni; Keller, Beat (2024). Pyramiding of transgenic immune receptors from primary and tertiary wheat gene pools improves powdery mildew resistance in the field. Journal of Experimental Botany, 75(7):1872-1886.
Luthra, Sakshi. Antibiotic Resistance Characteristics of $\textit{Mycobacterium}$ $\textit{Abscessus}$ Rely on Specific Outer Membrane Porins and Surface-Associated Glycopeptidolipids. 2024, University of Zurich, Faculty of Science.
Isaksson, Jonatan. Insight into the Molecular Mechanisms of the Interactions and Functions of the Wheat Powdery Mildew AVRPM3 and SVRPM3$^t{a1/f1}$ Effectors and the Wheat NLR-Type Immune Receptor PM3b. 2024, University of Zurich, Faculty of Science.
Minadakis, Nikolaos. The Genomics of Environmental Adaptation of a Mediterranean Grass. 2024, University of Zurich, Faculty of Science.
Thieme, Michael; Minadakis, Nikolaos; Himber, Christophe; Keller, Bettina; Xu, Wenbo; Rutowicz, Kinga; Matteoli, Calvin; Böhrer, Marcel; Rymen, Bart; Laudencia-Chingcuanco, Debbie; Vogel, John P; Sibout, Richard; Stritt, Christoph; Blevins, Todd; Roulin, Anne C (2024). Transposition of HOPPLA in siRNA-deficient plants suggests a limited effect of the environment on retrotransposon mobility in Brachypodium distachyon. PLoS Genetics, 20(3):e1011200.
Rain-Franco, Angel; Peter, Hannes; de Moraes, Guilherme Pavan; Beier, Sara (2024). The cost of adaptability: resource availability constrains functional stability under pulsed disturbances. mSphere, 9(2):e0072723.
Simonini, Sara; Bencivenga, Stefano; Grossniklaus, Ueli (2024). A paternal signal induces endosperm proliferation upon fertilization in Arabidopsis. Science, 383(6683):646-653.
Levins, Jonathan; Dierschke, Tom; Bowman, John L (2024). A subclass II bHLH transcription factor in Marchantia polymorpha gives insight into the ancestral land plant trait of spore formation. Current Biology, 34(4):895-901.e5.
Cabre, Lisa; Jing, Lun; Makechemu, Moffat; Heluin, Kylhan; El Khamlichi, Sarah; Leprince, Jérôme; Kiefer-Meyer, Marie Christine; Pluchon, Sylvain; Mollet, Jean-Claude; Zipfel, Cyril; Nguema-Ona, Eric (2024). Additive and Specific Effects of Elicitor Treatments on the Metabolic Profile of Arabidopsis thaliana. Molecular Plant-Microbe Interactions, 37(2):112-126.
Camenzind, Marcela; Koller, Teresa; Armbruster, Cygni; Jung, Esther; Brunner, Susanne; Herren, Gerhard; Keller, Beat (2024). Breeding for durable resistance against biotrophic fungal pathogens using transgenes from wheat. Molecular Breeding, 44(2):8.
García-Palacios, Pablo; Bradford, Mark A; Benavente-Ferraces, Iria; de Celis, Miguel; Delgado-Baquerizo, Manuel; García-Gil, Juan Carlos; Gaitán, Juan J; Goñi-Urtiaga, Asier; Mueller, Carsten W; Panettieri, Marco; Rey, Ana; Sáez-Sandino, Tadeo; Schuur, Edward A G; Sokol, Noah W; Tedersoo, Leho; Plaza, César (2024). Dominance of particulate organic carbon in top mineral soils in cold regions. Nature Geoscience, 17(2):145-150.
Goto, Yukihisa; Maki, Noriko; Sklenar, Jan; Derbyshire, Paul; Menke, Frank L H; Zipfel, Cyril; Kadota, Yasuhiro; Shirasu, Ken (2024). The phagocytosis oxidase/Bem1p domain-containing protein PB1CP negatively regulates the NADPH oxidase RBOHD in plant immunity. New Phytologist, 241(4):1763-1779.
Rog, Ido; Hilman, Boaz; Fox, Hagar; Yalin, David; Qubaja, Rafat; Klein, Tamir (2024). Increased belowground tree carbon allocation in a mature mixed forest in a dry versus a wet year. Global Change Biology, 30(2):e17172.
Labouyrie, Maëva; Ballabio, Cristiano; Romero, Ferran; Panagos, Panos; Jones, Arwyn; Tedersoo, Leho; van der Heijden, Marcel G A; Orgiazzi, Alberto (2024). Interaction effects of pH and land cover on soil microbial diversity are climate-dependent. Environmental Microbiology, 26(2):e16572.
Zhang, Changfeng; de Pasquale, Simone; Hartman, Kyle; Stanley, Claire E; Berendsen, Roeland L; van der Heijden, Marcel G A (2024). The microbial contribution to litter decomposition and plant growth. Environmental Microbiology Reports, 16(1):e13205.
Martin, Francis M; van der Heijden, Marcel G A (2024). The mycorrhizal symbiosis: research frontiers in genomics, ecology, and agricultural application. New Phytologist, 242(4):1486-1506.
Zhang, Changfeng; van der Heijden, Marcel G A; Dodds, Bethany K; Nguyen, Thi Bich; Spooren, Jelle; Valzano-Held, Alain; Cosme, Marco; Berendsen, Roeland L (2024). A tripartite bacterial-fungal-plant symbiosis in the mycorrhiza-shaped microbiome drives plant growth and mycorrhization. Microbiome, 12(1):13.
Zhu, Baoli; Chen, Zengming; Hu, Hangwei; Andrei, Adrian-Stefan; Li, Yong (2024). Greenhouse gas emissions and mitigation: microbes, mechanisms and modeling. Frontiers in Microbiology, 15:1363814.
Hofer, Cyrill; Wälchli, Denise; Moncadas, Lucas Serra; Rain-Franco, Angel; Andrei, Adrian-Stefan (2024). A high-quality genome of an undescribed Flavobacterium species uncovered using Q20+ Nanopore chemistry. Microbiology Resource Announcements, 13(1):online.
Serra Moncadas, Lucas; Schnellmann, Vanessa; Hofer, Cyrill; Rain-Franco, Angel; Andrei, Adrian-Stefan (2024). Complete genome of Flavobacterium pectinovorum str. ZE23VCel01 obtained through Nanopore Q20+ chemistry. Microbiology Resource Announcements, 13(1):online.
Tuo, Bin; García-Palacios, Pablo; Guo, Chao; Yan, En-Rong; Berg, Matty P; Cornelissen, Johannes H C (2024). Meta-analysis reveals that vertebrates enhance plant litter decomposition at the global scale. Nature Ecology and Evolution:online.
Banerjee, Samiran; Zhao, Cheng; Garland, Gina; Edlinger, Anna; García-Palacios, Pablo; Romdhane, Sana; Degrune, Florine; Pescador, David S; Herzog, Chantal; Camuy-Velez, Lennel A; Bascompte, Jordi; Hallin, Sara; Philippot, Laurent; Maestre, Fernando T; Rillig, Matthias C; van der Heijden, Marcel G A (2024). Biotic homogenization, lower soil fungal diversity and fewer rare taxa in arable soils across Europe. Nature Communications, 15(1):327.
Rhodes, Jack; Zipfel, Cyril (2024). Identification of Bioactive Phytocytokines Using Transcriptomic Data and Plant Bioassays. In: Schaller, Andreas. Plant Peptide Hormones and Growth Factors. New York: Springer, 23-35.
Zhang, Yong; Cheng, Xiaoli; van Groenigen, Kees Jan; García-Palacios, Pablo; Cao, Junji; Zheng, Xunhua; Luo, Yiqi; Hungate, Bruce A; Terrer, Cesar; Butterbach-Bahl, Klaus; Olesen, Jørgen Eivind; Chen, Ji (2024). Shifts in soil ammonia-oxidizing community maintain the nitrogen stimulation of nitrification across climatic conditions. Global Change Biology, 30(1):e16989.
Gupta, Shibu; Guérin, Amandine; Herger, Aline; Hou, Xiaoyu; Schaufelberger, Myriam; Roulard, Romain; Diet, Anouck; Roffler, Stefan; Lefebvre, Valérie; Wicker, Thomas; Pelloux, Jérôme; Ringli, Christoph (2024). Growth-inhibiting effects of the unconventional plant APYRASE 7 of Arabidopsis thaliana influences the LRX/RALF/FER growth regulatory module. PLoS Genetics, 20(1):e1011087.
Lutz, Stefanie; Bodenhausen, Natacha (2024). Das Gute kommt von unten. UFA - Revue, 1:10-13.
Rain-Franco, Angel; Le Moigne, Alizée; Serra Moncadas, Lucas; Silva, Marisa O D; Andrei, Adrian-Stefan; Pernthaler, Jakob (2024). Dispersal shapes compositional and functional diversity in aquatic microbial communities. mSystems, 9(12):e0140324.
Boukheloua, Roudaina; Mukherjee, Indranil; Park, Hongjae; Šimek, Karel; Kasalický, Vojtěch; Ngochera, Maxon; Grossart, Hans-Peter; Picazo-Mozo, Antonio; Camacho, Antonio; Cabello-Yeves, Pedro J; Rodriguez-Valera, Francisco; Callieri, Cristiana; Andrei, Adrian-Stefan; Pernthaler, Jakob; Posch, Thomas; Alfreider, Albin; Sommaruga, Ruben; Hahn, Martin W; Sonntag, Bettina; López-García, Purificación; Moreira, David; Jardillier, Ludwig; Lepère, Cécile; Biderre-Petit, Corinne; Bednarska, Anna; Ślusarczyk, Mirosław; Tóth, Viktor R; Banciu, Horia L; Kormas, Konstantinos; Orlić, Sandi; et al (2024). Global freshwater distribution of Telonemia protists. The ISME journal, 18(1):wrae177.
Lutz, Stefanie; Bodenhausen, Natacha; Schlaeppi, Klaus; van der Heijden, Marcel (2024). Mykorrhiza: Lohnt sich eine Impfung? Lumbrico, 17:18-21.
Lutz, S; Bender, S Franz; Bodenhausen, Natacha; Schlaeppi, Klaus; van der Heijden, Marcel (2024). Mykorrhizapilze für einen gesunden Boden: Nützlinge nutzbar machen. Der Pflanzenarzt : Fachzeitschrift für Pflanzenschutz, Vorratsschutz und Pflanzenernährung, (1-2):6-9.
Wittwer, Raphaël; Klaus, Valentin H; Richter, Franziska; van der Heijden, Marcel G A (2024). Ökosystemleistungen und Multifunktionalität in der Landwirtschaft messen und bewerten. Bern: ALP science.
Cakir, Isa; Aerni, Philipp; Bergman, Manfred Max; Cakir, Benjamin (2023). esg2go: A Method to Reduce Bias, Improve Coherence, and Increase Practicality of ESG Rating and Reporting. Sustainability, 15(24):16872.
Goto, Yukihisa; Kadota, Yasuhiro; Mbengue, Malick; Lewis, Jennifer D; Matsui, Hidenori; Maki, Noriko; Sklenar, Jan; Derbyshire, Paul; Shibata, Arisa; Ichihashi, Yasunori; Guttman, David S; Nakagami, Hirofumi; Suzuki, Takamasa; Menke, Frank L H; Robatzek, Silke; Desveaux, Darrell; Zipfel, Cyril; Shirasu, Ken (2023). The leucine-rich repeat receptor kinase QSK1 is a novel regulator of PRR-RBOHD complex and is employed by the bacterial effector HopF2$_{Pto}$ to modulate plant immunity. bioRxiv 571443, Cold Spring Harbor Laboratory.
Heredia-Ponce, Zaira; Secchi, Eleonora; Toyofuku, Masanori; Marinova, Gabriela; Savorana, Giovanni; Eberl, Leo (2023). Genotoxic stress stimulates eDNA release via explosive cell lysis and thereby promotes streamer formation of Burkholderia cenocepacia H111 cultured in a microfluidic device. npj Biofilms and Microbiomes, 9(1):96.
Wanke, Alan; van Boerdonk, Sarah; Mahdi, Lisa Katharina; Wawra, Stephan; Neidert, Miriam; Chandrasekar, Balakumaran; Saake, Pia; Saur, Isabel M L; Derbyshire, Paul; Holton, Nicholas; Menke, Frank L H; Brands, Mathias; Pauly, Markus; Acosta, Ivan F; Zipfel, Cyril; Zuccaro, Alga (2023). A GH81-type β-glucan-binding protein enhances colonization by mutualistic fungi in barley. Current Biology, 33(23):5071-5084.e7.
Feng, Maomao; Varliero, Gilda; Qi, Weihong; Stierli, Beat; Edwards, Arwyn; Robinson, Serina; van der Heijden, Marcel G A; Frey, Beat (2023). Microbial dynamics in soils of the Damma glacier forefield show succession in the functional genetic potential. Environmental Microbiology, 25(12):3116-3138.
Bender, S Franz; Schulz, Stefanie; Martínez-Cuesta, Rubén; Laughlin, Ronald J; Kublik, Susanne; Pfeiffer-Zakharova, Kristina; Vestergaard, Gisle; Hartman, Kyle; Parladé, Eloi; Römbke, Jörg; Watson, Catherine J; Schloter, Michael; van der Heijden, Marcel G A (2023). Simplification of soil biota communities impairs nutrient recycling and enhances above- and belowground nitrogen losses. New Phytologist, 240(5):2020-2034.
Dias, Márcia Gonçalves; Doss, Bassem; Rawat, Anamika; Siegel, Kristen R; Mahathanthrige, Tharika; Sklenar, Jan; Derbyshire, Paul; Dharmasena, Thakshila; Cameron, Emma; Zipfel, Cyril; Menke, Frank L H; Monaghan, Jacqueline (2023). Subfamily C7 Raf-like kinases MRK1, RAF26, and RAF39 regulate immune homeostasis and stomatal opening in Arabidopsis thaliana. bioRxiv 569073, Cold Spring Harbor Laboratory.
Tourdot, Edouard; Grob, Stefan (2023). Three-dimensional chromatin architecture in plants - General features and novelties. European Journal of Cell Biology, 102(4):151344.
Lutz, Stefanie; Bodenhausen, Natacha; Hess, Julia; Valzano-Held, Alain; Waelchli, Jan; Deslandes-Hérold, Gabriel; Schlaeppi, Klaus; van der Heijden, Marcel G A (2023). Soil microbiome indicators can predict crop growth response to large-scale inoculation with arbuscular mycorrhizal fungi. Nature Microbiology, 8(12):2277-2289.
Yang, Huanjie; Kim, Xeniya; Skłenar, Jan; Aubourg, Sébastien; Sancho-Andrés, Gloria; Stahl, Elia; Guillou, Marie-Charlotte; Gigli-Bisceglia, Nora; Tran Van Canh, Loup; Bender, Kyle W; Stintzi, Annick; Reymond, Philippe; Sánchez-Rodríguez, Clara; Testerink, Christa; Renou, Jean-Pierre; Menke, Frank L H; Schaller, Andreas; Rhodes, Jack; Zipfel, Cyril (2023). Subtilase-mediated biogenesis of the expanded family of SERINE RICH ENDOGENOUS PEPTIDES. Nature Plants, 9(12):2085-2094.
Mermet, Sarah; Voisin, Maxime; Mordier, Joris; Dubos, Tristan; Tutois, Sylvie; Tuffery, Pierre; Baroux, Célia; Tamura, Kentaro; Probst, Aline V; Vanrobays, Emmanuel; Tatout, Christophe (2023). Evolutionarily conserved protein motifs drive interactions between the plant nucleoskeleton and nuclear pores. Plant Cell, 35(12):4284-4303.
Bucheli, Thomas D; Barmettler, Elias; Bartolomé, Nora; Hilber, Isabel; Hornak, Karel; Meuli, Reto G; Reininger, Vanessa; Riedo, Judith; Rösch, Andrea; Sutter, Philipp; van der Heijden, Marcel G A; Wächter, Daniel; Walder, Florian (2023). Pesticides in Agricultural Soils: Major Findings from Various Monitoring Campaigns in Switzerland. Chimia, 77(11):750-757.
Sasse, Joelle (2023). Plant Chemistry and Morphological Considerations for Efficient Carbon Sequestration. Chimia, 77(11):726-732.
Lintz, Julie; Goto, Yukihisa; Bender, Kyle W; Bchini, Raphaël; Dubrulle, Guillaume; Cawston, Euan; Zipfel, Cyril; Duplessis, Sebastien; Petre, Benjamin (2023). Genetically-clustered antifungal phytocytokines and receptor proteins function together to trigger plant immune signaling. bioRxiv 568785, University of Zurich.
Bonnet, Diane Marie Valerie; Tirot, Louis; Grob, Stefan; Jullien, Pauline Emilie (2023). Methylome Response to Proteasome Inhibition by Pseudomonas syringae Virulence Factor Syringolin A. Molecular Plant-Microbe Interactions, 36(11):693-704.
Kesten, Christopher; Leitner, Valentin; Dora, Susanne; Sims, James W; Dindas, Julian; Zipfel, Cyril; De Moraes, Consuelo M; Sanchez-Rodriguez, Clara (2023). Soil-borne fungi alter the apoplastic purinergic signaling in plants by deregulating the homeostasis of extracellular ATP and its metabolite adenosine. eLife, 12:online.
McLaughlin, Sarah; Joller, Charlotte; Siffert, Alexandra; Stirnemann, Eva Marina; Sasse, Joelle (2023). A Versatile Glass Jar System for Semihydroponic Root Exudate Profiling. Journal of Visualized Experiments, 201:e66070.
Manser, Beatrice; Zbinden, Helen; Herren, Gerhard; Steger, Joel; Isaksson, Jonatan; Bräunlich, Stephanie; Wicker, Thomas; Keller, Beat (2023). Wheat zinc finger protein TaZF interacts with both the powdery mildew AvrPm2 protein and the corresponding wheat Pm2a immune receptor. Plant Communications:online.
Sharma, Parva Kumar; Ahmed, Hanin Ibrahim; Heuberger, Matthias; Koo, Dal-Hoe; Quiroz-Chavez, Jesus; Adhikari, Laxman; Raupp, John; Cauet, Stéphane; Rodde, Nathalie; Cravero, Charlotte; Callot, Caroline; Yadav, Inderjit Singh; Kathiresan, Nagarajan; Athiyannan, Naveenkumar; Ramirez-Gonzalez, Ricardo H; Uauy, Cristobal; Wicker, Thomas; Abrouk, Michael; Gu, Yong Q; Poland, Jesse; Krattinger, Simon G; Lazo, Gerard R; Tiwari, Vijay K (2023). An online database for einkorn wheat to aid in gene discovery and functional genomics studies. Database, 2023:baad079.
Moussu, Steven; Lee, Hyun Kyung; Haas, Kalina T; Broyart, Caroline; Rathgeb, Ursina; De Bellis, Damien; Levasseur, Thomas; Schoenaers, Sébastjen; Fernandez, Gorka S; Grossniklaus, Ueli; Bonnin, Estelle; Hosy, Eric; Vissenberg, Kris; Geldner, Niko; Cathala, Bernard; Höfte, Herman; Santiago, Julia (2023). Plant cell wall patterning and expansion mediated by protein-peptide-polysaccharide interaction. Science, 382(6671):719-725.
Hisanaga, Tetsuya; Romani, Facundo; Wu, Shuangyang; Kowar, Teresa; Wu, Yue; Lintermann, Ruth; Fridrich, Arie; Cho, Chung Hyun; Chaumier, Timothée; Jamge, Bhagyshree; Montgomery, Sean A; Axelsson, Elin; Akimcheva, Svetlana; Dierschke, Tom; Bowman, John L; Fujiwara, Takayuki; Hirooka, Shunsuke; Miyagishima, Shin-Ya; Dolan, Liam; Tirichine, Leila; Schubert, Daniel; Berger, Frédéric (2023). The Polycomb repressive complex 2 deposits H3K27me3 and represses transposable elements in a broad range of eukaryotes. Current Biology, 33(20):4367-4380.e9.
Hofer, Cyrill; Lingenhag, Seraina; Serra Moncadas, Lucas; Rain-Franco, Angel; Andrei, Adrian-Stefan (2023). Q20+ Nanopore sequencing data recover a high-quality Asticcacaulis sp. genome. Microbiology Resource Announcements, 12(10):online.
Serra Moncadas, Lucas; Rogenmoser, Janis; Hofer, Cyrill; Rain-Franco, Angel; Andrei, Adrian-Stefan (2023). Pseudomonas kielensis str. Ze23jcel16 complete genome obtained through R10.4.1 Nanopore Flow cell chemistry. Microbiology Resource Announcements:online.
Klein, Tamir; Rog, Ido; Livne-Luzon, Stav; van der Heijden, Marcel G A; Körner, Christian (2023). Belowground carbon transfer across mycorrhizal networks among trees: Facts, not fantasy. Open research Europe, 3:online.
Wittwer, Raphaël A; Klaus, Valentin H; Miranda Oliveira, Emily; Sun, Qing; Liu, Yujie; Gilgen, Anna K; Buchmann, Nina; van der Heijden, Marcel G A (2023). Limited capability of organic farming and conservation tillage to enhance agroecosystem resilience to severe drought. Agricultural Systems, 211:103721.
Walder, Florian; Büchi, Lucie; Wagg, Cameron; Colombi, Tino; Banerjee, Samiran; Hirte, Juliane; Mayer, Jochen; Six, Johan; Keller, Thomas; Charles, Raphaël; van der Heijden, Marcel G A (2023). Synergism between production and soil health through crop diversification, organic amendments and crop protection in wheat‐based systems. Journal of Applied Ecology, 60(10):2091-2104.
Pernthaler, Jakob; Krempaska, Natalia; Le Moigne, Alizée (2023). Small-scale spatial beta diversity of bacteria in the mixed upper layer of a lake. Environmental Microbiology, 25(10):1847-1859.
Blekemolen, Mila C; Liu, Zunyong; Stegman, Martin; Zipfel, Cyril; Shan, Libo; Takken, Frank L W (2023). The PTI-suppressing Avr2 effector from Fusarium oxysporum suppresses mono-ubiquitination and plasma membrane dissociation of BIK1. Molecular Plant Pathology, 24(10):1273-1286.
Aerni, Philipp; Kock, Michael. «Gentechnik» – Schluss mit alten Grabenkämpfen [Gastkommentar]. In: Neue Zürcher Zeitung, 224, 27 September 2023, 19.
Minadakis, Nikolaos; Williams, Hefin; Horvath, Robert; Caković, Danka; Stritt, Christoph; Thieme, Michael; Bourgeois, Yann; Roulin, Anne C (2023). The demographic history of the wild crop relative Brachypodium distachyon is shaped by distinct past and present ecological niches. Peer Community Journal, 3:e84.
Bodenhausen, Natacha; Hess, Julia; Valzano-Held, Alain; Deslandes‐Hérold, Gabriel; Waelchli, Jan; Furrer, Reinhard; van der Heijden, Marcel G A; Schlaeppi, Klaus (2023). Predicting soil fungal communities from chemical and physical properties. Journal of Sustainable Agriculture and Environment, 2(3):225-237.
Mühlenbeck, Henning; Tsutsui, Yuko; Lemmon, Mark A; Bender, Kyle W; Zipfel, Cyril (2023). Allosteric activation of the co-receptor BAK1 by the EFR receptor kinase initiates immune signaling. bioRxiv 554490, Cold Spring Harbor Laboratory.
Anthony, Mark A; Bender, S Franz; van der Heijden, Marcel G A (2023). Enumerating soil biodiversity. Proceedings of the National Academy of Sciences of the United States of America, 120(33):e2304663120.
Saripalli, Gautam; Adhikari, Laxman; Amos, Cameron; Kibriya, Ashraf; Ahmed, Hanin Ibrahim; Heuberger, Matthias; Raupp, John; Athiyannan, Naveenkumar; Wicker, Thomas; Abrouk, Michael; Wallace, Sydney; Hosseinirad, Seyedali; Chhuneja, Parveen; Livesay, Janelle; Rawat, Nidhi; Krattinger, Simon G; Poland, Jesse; Tiwari, Vijay (2023). Integration of genetic and genomics resources in einkorn wheat enables precision mapping of important traits. Communications Biology, 6(1):online.
Cao, Yu; Kümmel, Florian; Logemann, Elke; Gebauer, Jan M; Lawson, Aaron W; Yu, Dongli; Uthoff, Matthias; Keller, Beat; Jirschitzka, Jan; Baumann, Ulrich; Tsuda, Kenichi; Chai, Jijie; Schulze-Lefert, Paul (2023). Structural polymorphisms within a common powdery mildew effector scaffold as a driver of coevolution with cereal immune receptors. Proceedings of the National Academy of Sciences of the United States of America, 120(32):e2307604120.
Ojosnegros, Sara; Alvarez, José Manuel; Grossmann, Jonas; Gagliardini, Valeria; Quintanilla, Luis G; Grossniklaus, Ueli; Fernández, Helena (2023). Proteome and Interactome Linked to Metabolism, Genetic Information Processing, and Abiotic Stress in Gametophytes of Two Woodferns. International Journal of Molecular Sciences, 24(15):online.
Israeli, Alon (2023). Correction: Alon Israeli and others, Modulating auxin response stabilizes tomato fruit set. Plant Physiology, 192(4):3204.
Zhang, Qiyan; Wang, Zejia; Lu, Xinyue; Yan, Huiru; Zhang, Huawei; He, Hang; Bischof, Sylvain; Harris, C Jake; Liu, Qikun (2023). DDT-RELATED PROTEIN4-IMITATION SWITCH alters nucleosome distribution to relieve transcriptional silencing in Arabidopsis. Plant Cell, 35(8):3109-3126.
Zhang, Jie; Wysocki, Robert; Li, Fangbai; Yu, Min; Martinoia, Enrico; Song, Won-Yong (2023). Role of ubiquitination in arsenic tolerance in plants. Trends in Plant Science, 28(8):880-892.
Romero, Ferran; Hilfiker, Sarah; Edlinger, Anna; Held, Alain; Hartman, Kyle; Labouyrie, Maëva; van der Heijden, Marcel G A (2023). Soil microbial biodiversity promotes crop productivity and agro-ecosystem functioning in experimental microcosms. Science of the Total Environment, 885:163683.
Martinoia, Enrico; Neuhaus, Ekkehard (2023). A complex network regulating malate contents during fruit ripening in climacteric fruits. New Phytologist, 239(3):821-823.
Ahmed, Hanin Ibrahim; Heuberger, Matthias; Schoen, Adam; Koo, Dal-Hoe; Quiroz-Chavez, Jesus; Adhikari, Laxman; Raupp, John; Cauet, Stéphane; Rodde, Nathalie; Cravero, Charlotte; Callot, Caroline; Lazo, Gerard R; Kathiresan, Nagarajan; Sharma, Parva K; Moot, Ian; Yadav, Inderjit Singh; Singh, Lovepreet; Saripalli, Gautam; Rawat, Nidhi; Datla, Raju; Athiyannan, Naveenkumar; Ramirez-Gonzalez, Ricardo H; Uauy, Cristobal; Wicker, Thomas; Tiwari, Vijay K; Abrouk, Michael; Poland, Jesse; Krattinger, Simon G (2023). Einkorn genomics sheds light on history of the oldest domesticated wheat. Nature, 620(7975):830-838.
Hartman, Kyle; Schmid, Marc W; Bodenhausen, Natacha; Bender, S Franz; Valzano-Held, Alain Y; Schlaeppi, Klaus; van der Heijden, Marcel G A (2023). A symbiotic footprint in the plant root microbiome. Environmental Microbiome, 18(1):65.
Teano, Gianluca; Concia, Lorenzo; Wolff, Léa; Carron, Léopold; Biocanin, Ivona; Adamusová, Kateřina; Fojtová, Miloslava; Bourge, Michael; Kramdi, Amira; Colot, Vincent; Grossniklaus, Ueli; Bowler, Chris; Baroux, Célia; Carbone, Alessandra; Probst, Aline V; Schrumpfová, Petra Procházková; Fajkus, Jiří; Amiard, Simon; Grob, Stefan; Bourbousse, Clara; Barneche, Fredy (2023). Histone H1 protects telomeric repeats from H3K27me3 invasion in Arabidopsis. Cell Reports, 42(8):112894.
Pršić, Jelena; Gilliard, Guillaume; Ibrahim, Heba; Argüelles-Arias, Anthony; Rondelli, Valeria; Crowet, Jean-Marc; Genva, Manon; Luzuriaga-Loaiza, W Patricio; Deboever, Estelle; Nasir, M Nail; Lins, Laurence; Mathelie-Guinlet, Marion; Boubsi, Farah; Eschrig, Sabine; Ranf, Stefanie; Dorey, Stephan; Coninck, Barbara De; Nürnberger, Thorsten; Mongrand, Sébastien; Höfte, Monica; Zipfel, Cyril; Dufrêne, Yves F; Koutsioubas, Alexandros; Brocca, Paola; Deleu, Magali; Ongena, Marc (2023). Mechanosensing and Sphingolipid-Docking Mediate Lipopeptide-Induced Immunity in Arabidopsis. bioRxiv 547613, University of Zurich.
Hug, Sebastian; Heiniger, Benjamin; Bolli, Kim; Paszti, Sarah; Eberl, Leo; Ahrens, Christian H; Pessi, Gabriella (2023). Paraburkholderia sabiae Uses One Type VI Secretion System (T6SS-1) as a Powerful Weapon against Notorious Plant Pathogens. Microbiology Spectrum:online.
Li, Zheng; Wang, Ming; Zhong, Zhenhui; Gallego-Bartolomé, Javier; Feng, Suhua; Jami-Alahmadi, Yasaman; Wang, Xinyi; Wohlschlegel, James; Bischof, Sylvain; Long, Jeff A; Jacobsen, Steven E (2023). The MOM1 complex recruits the RdDM machinery via MORC6 to establish de novo DNA methylation. Nature Communications, 14(1):online.
George, Jeoffrey; Stegmann, Martin; Monaghan, Jacqueline; Bailey-Serres, Julia; Zipfel, Cyril (2023). Arabidopsis translation initiation factor binding protein CBE1 negatively regulates accumulation of the NADPH oxidase respiratory burst oxidase homolog D. Journal of Biological Chemistry, 299(8):105018.
Toda, Misato; Walder, Florian; van der Heijden, Marcel G A (2023). Organic management and soil health promote nutrient use efficiency. Journal of Sustainable Agriculture and Environment, 2(3):215-224.
Toyofuku, Masanori; Schild, Stefan; Kaparakis-Liaskos, Maria; Eberl, Leo (2023). Composition and functions of bacterial membrane vesicles. Nature Reviews. Microbiology, 21(7):415-430.
Goig, Galo A; Menardo, Fabrizio; Salaam-Dreyer, Zubeida; Dippenaar, Anzaan; Streicher, Elizabeth M; Daniels, Johnny; Reuter, Anja; Borrell, Sonia; Reinhard, Miriam; Doetsch, Anna; Beisel, Christian; Warren, Robin M; Cox, Helen; Gagneux, Sebastien (2023). Effect of compensatory evolution in the emergence and transmission of rifampicin-resistant Mycobacterium tuberculosis in Cape Town, South Africa: a genomic epidemiology study. The Lancet Microbe, 4(7):e506-e515.
Romero, Ferran; Argüello, Alicia; de Bruin, Susanne; van der Heijden, Marcel G A (2023). The plant–mycorrhizal fungi collaboration gradient depends on plant functional group. Functional Ecology, 37(9):2386-2398.
Bender, Kyle W; Zipfel, Cyril (2023). Paradigms of receptor kinase signaling in plants. Biochemical Journal, 480(12):835-854.
Riedo, Judith; Yokota, Aya; Walther, Barbara; Bartolomé, Nora; van der Heijden, Marcel G A; Bucheli, Thomas D; Walder, Florian (2023). Temporal dynamics of total and bioavailable fungicide concentrations in soil and their effect upon nine soil microbial markers. Science of the Total Environment, 878:162995.
Labouyrie, Maëva; Ballabio, Cristiano; Romero, Ferran; Panagos, Panos; Jones, Arwyn; Schmid, Marc W; Mikryukov, Vladimir; Dulya, Olesya; Tedersoo, Leho; Bahram, Mohammad; Lugato, Emanuele; van der Heijden, Marcel G A; Orgiazzi, Alberto (2023). Patterns in soil microbial diversity across Europe. Nature Communications, 14(1):online.
Wuest, Samuel E; Schulz, Lukas; Rana, Surbhi; Frommelt, Julia; Ehmig, Merten; Pires, Nuno D; Grossniklaus, Ueli; Hardtke, Christian S; Hammes, Ulrich Z; Schmid, Bernhard; Niklaus, Pascal A (2023). Single-gene resolution of diversity-driven overyielding in plant genotype mixtures. Nature Communications, 14(1):3379.
Adero, Mark Ochieng; Tripathi, Jaindra Nath; Oduor, Richard Okoth; Zipfel, Cyril; Tripathi, Leena (2023). Transgenic expression of Arabidopsis ELONGATION FACTOR-TU RECEPTOR (AtEFR) gene in banana enhances resistance to Banana Xanthomonas Wilt disease. bioRxiv 543870, University of Zurich.
Edlinger, Anna; Garland, Gina; Banerjee, Samiran; Degrune, Florine; García-Palacios, Pablo; Herzog, Chantal; Pescador, David Sánchez; Romdhane, Sana; Ryo, Masahiro; Saghaï, Aurélien; Hallin, Sara; Maestre, Fernando T; Philippot, Laurent; Rillig, Matthias C; van der Heijden, Marcel G A (2023). The impact of agricultural management on soil aggregation and carbon storage is regulated by climatic thresholds across a 3000 km European gradient. Global Change Biology, 29(11):3177-3192.
Megremis, Spyridon; Constantinides, Bede; Xepapadaki, Paraskevi; Yap, Chuan Fu; Sotiropoulos, Alexandros G; Bachert, Claus; Finotto, Susetta; Jartti, Tuomas; Tapinos, Avraam; Vuorinen, Tytti; Andreakos, Evangelos; Robertson, David L; Papadopoulos, Nikolaos G (2023). Respiratory eukaryotic virome expansion and bacteriophage deficiency characterize childhood asthma. Scientific Reports, 13(1):8319.
Formenti, Ludovico; Iwanycki Ahlstrand, Natalie; Hassemer, Gustavo; Glauser, Gaëtan; van den Hoogen, Johan; Rønsted, Nina; van der Heijden, Marcel; Crowther, Thomas W; Rasmann, Sergio (2023). Macroevolutionary decline in mycorrhizal colonization and chemical defense responsiveness to mycorrhization. iScience, 26(5):106632.
Moreira, Carlos J S; Escórcio, Rita; Bento, Artur; Bjornson, Marta; Tomé, Ana S; Martins, Celso; Fanuel, Mathieu; Martins, Isabel; Bakan, Benedicte; Zipfel, Cyril; Pereira, Cristina Silva (2023). Cutin-Derived Oligomers Act as Damage-Associated Molecular Patterns in Arabidopsis thaliana. bioRxiv 540997, University of Zurich.
Rillig, Matthias C; van der Heijden, Marcel G A; Berdugo, Miguel; Liu, Yu-Rong; Riedo, Judith; Sanz-Lazaro, Carlos; Moreno-Jiménez, Eduardo; Romero, Ferran; Tedersoo, Leho; Delgado-Baquerizo, Manuel (2023). Increasing the number of stressors reduces soil ecosystem services worldwide. Nature Climate Change, 13(5):478-483.
Grayfer, Tatyana D; Yamani, Khalil; Jung, Erik; Chesnokov, Gleb A; Ferrara, Isabella; Hsiao, Chien-Chi; Georgiou, Antri; Michel, Jeremy; Bailly, Aurélien; Sieber, Simon; Eberl, Leo; Gademann, Karl (2023). Allylic Carbocyclic Inhibitors Covalently Bind Glycoside Hydrolases. JACS Au, 3(4):1151-1161.
Hurst, Charlotte H; Turnbull, Dionne; Xhelilaj, Kaltra; Myles, Sally; Pflughaupt, Robin L; Kopischke, Michaela; Davies, Paul; Jones, Susan; Robatzek, Silke; Zipfel, Cyril; Gronnier, Julien; Hemsley, Piers A (2023). S-acylation stabilizes ligand-induced receptor kinase complex formation during plant pattern-triggered immune signaling. Current Biology, 33(8):1588-1596.e6.
Nowicka, Anna; Ferková, Luboslava; Said, Mahmoud; Kovacik, Martin; Zwyrtková, Jana; Baroux, Célia; Pecinka, Ales (2023). Non-Rabl chromosome organization in endoreduplicated nuclei of barley embryo and endosperm tissues. Journal of Experimental Botany, 74(8):2527-2541.
Wanke, Alan; van Boerdonk, Sarah; Mahdi, Lisa K; Wawra, Stephan; Neidert, Miriam; Chandrasekar, Balakumaran; Saake, Pia; Saur, Isabel M L; Derbyshire, Paul; Holton, Nicholas; Menke, Frank L H; Brands, Mathias; Pauly, Markus; Acosta, Ivan F; Zipfel, Cyril; Zuccaro, Alga (2023). A GH81-type β-glucan-binding protein facilitates colonization by mutualistic fungi in barley. bioRxiv 536646, University of Zurich.
Smokvarska, Marija; Bayle, Vincent; Maneta-Peyret, Lilly; Fouillen, Laetitia; Poitout, Arthur; Dongois, Armelle; Fiche, Jean-Bernard; Gronnier, Julien; Garcia, José; Höfte, Herman; Nolmann, Marcelo; Zipfel, Cyril; Maurel, Christophe; Moreau, Patrick; Jaillais, Yvon; Martiniere, Alexandre (2023). The receptor kinase FERONIA regulates phosphatidylserine localization at the cell surface to modulate ROP signaling. Science Advances, 9(14):eadd4791.
Pakuła, Konrad; Sequeiros-Borja, Carlos; Biała-Leonhard, Wanda; Pawela, Aleksandra; Banasiak, Joanna; Bailly, Aurélien; Radom, Marcin; Geisler, Markus; Brezovsky, Jan; Jasiński, Michał (2023). Restriction of access to the central cavity is a major contributor to substrate selectivity in plant ABCG transporters. Cellular and Molecular Life Sciences, 80(4):105.
Zwyer, Michaela; Rutaihwa, Liliana K; Windels, Etthel; Hella, Jerry; Menardo, Fabrizio; Sasamalo, Mohamed; Sommer, Gregor; Schmülling, Lena; Borrell, Sonia; Reinhard, Miriam; Dötsch, Anna; Hiza, Hellen; Stritt, Christoph; Sikalengo, George; Fenner, Lukas; De Jong, Bouke C; Kato-Maeda, Midori; Jugheli, Levan; Ernst, Joel D; Niemann, Stefan; Jeljeli, Leila; Ballif, Marie; Egger, Matthias; Rakotosamimanana, Niaina; Yeboah-Manu, Dorothy; Asare, Prince; Malla, Bijaya; Dou, Horng Yunn; Zetola, Nicolas; Wilkinson, Robert J; et al (2023). Back-to-Africa introductions of Mycobacterium tuberculosis as the main cause of tuberculosis in Dar es Salaam, Tanzania. PLoS Pathogens, 19(4):e1010893.
Le Moigne, Alizée; Randegger, Florian; Gupta, Anubhav; Petchey, Owen L; Pernthaler, Jakob (2023). Stochasticity causes high β-diversity and functional divergence of bacterial assemblages in closed systems. Ecology, 104(4):e4005.
Liu, Yu-Rong; van der Heijden, Marcel G A; Riedo, Judith; Sanz-Lazaro, Carlos; Eldridge, David J; Bastida, Felipe; Moreno-Jiménez, Eduardo; Zhou, Xin-Quan; Hu, Hang-Wei; He, Ji-Zheng; Moreno, José L; Abades, Sebastian; Alfaro, Fernando; Bamigboye, Adebola R; Berdugo, Miguel; Blanco-Pastor, José L; de Los Ríos, Asunción; Duran, Jorge; Grebenc, Tine; Illán, Javier G; Makhalanyane, Thulani P; Molina-Montenegro, Marco A; Nahberger, Tina U; Peñaloza-Bojacá, Gabriel F; Plaza, César; Rey, Ana; Rodríguez, Alexandra; Siebe, Christina; Teixido, Alberto L; Casado-Coy, Nuria; et al (2023). Soil contamination in nearby natural areas mirrors that in urban greenspaces worldwide. Nature Communications, 14(1):1706.
McLaughlin, Sarah; Zhalnina, Kateryna; Kosina, Suzanne; Northen, Trent R; Sasse, Joelle (2023). The core metabolome and root exudation dynamics of three phylogenetically distinct plant species. Nature Communications, 14(1):1649.
Li, Xia; Zhao, Ruotong; Li, Dandan; Wang, Guangzhou; Bei, Shuikuan; Ju, Xiaotang; An, Ran; Li, Long; Kuyper, Thomas W; Christie, Peter; Bender, Franz S; Veen, Ciska; van der Heijden, Marcel G A; van der Putten, Wim H; Zhang, Fusuo; Butterbach-Bahl, Klaus; Zhang, Junling (2023). Mycorrhiza-mediated recruitment of complete denitrifying Pseudomonas reduces N$_{2}$O emissions from soil. Microbiome, 11(1):45.
Bellés-Sancho, Paula; Beukes, Chrizelle; James, Euan K; Pessi, Gabriella (2023). Nitrogen-Fixing Symbiotic Paraburkholderia Species: Current Knowledge and Future Perspectives. Nitrogen, 4(1):135-158.
Frangedakis, Eftychios; Marron, Alan O; Waller, Manuel; Neubauer, Anna; Tse, Sze Wai; Yue, Yuling; Ruaud, Stéphanie; Waser, Lucas; Sakakibara, Keiko; Szövényi, Péter (2023). What can hornworts teach us? Frontiers in Plant Science, 14:1108027.
Chu, Jiashu; Monte, Isabel; DeFalco, Thomas A; Köster, Philipp; Derbyshire, Paul; Menke, Frank L H; Zipfel, Cyril (2023). Conservation of the PBL-RBOH immune module in land plants. Current Biology, 33(6):1130-1137.e5.
Poretti, Manuel; Praz, Coraline R; Sotiropoulos, Alexandros G; Wicker, Thomas (2023). A survey of lineage-specific genes in Triticeae reveals de novo gene evolution from genomic raw material. Plant Direct, 7(3):e484.
Desnoyer, Nicholas J; Grossniklaus, Ueli (2023). Live Imaging of Arabidopsis Pollen Tube Reception and Double Fertilization Using the Semi-In Vitro Cum Septum Method. Journal of Visualized Experiments, (192):online.
Kunz, Lukas; Sotiropoulos, Alexandros G; Graf, Johannes; Razavi, Mohammad; Keller, Beat; Müller, Marion C (2023). The broad use of the Pm8 resistance gene in wheat resulted in hypermutation of the AvrPm8 gene in the powdery mildew pathogen. BMC Biology, 21(1):29.
Ngugi, David Kamanda; Salcher, Michaela M; Andrei, Adrian-Stefan; Ghai, Rohit; Klotz, Franziska; Chiriac, Maria-Cecilia; Ionescu, Danny; Büsing, Petra; Grossart, Hans-Peter; Xing, Peng; Priscu, John C; Alymkulov, Salmor; Pester, Michael (2023). Postglacial adaptations enabled colonization and quasi-clonal dispersal of ammonia-oxidizing archaea in modern European large lakes. Science Advances, 9(5):eadc9392.
Aerni, Philipp (2023). COP-27: A great opportunity to address the double crisis of food security and climate change–and for the EU to re-align its farm to fork strategy. Frontiers in Environmental Economics, 1:1082869.
Wang, Qian; Aliaga Fandino, A Cecilia; Graeff, Moritz; DeFalco, Thomas A; Zipfel, Cyril; Hardtke, Christian S (2023). A phosphoinositide hub connects CLE peptide signaling and polar auxin efflux regulation. Nature Communications, 14(1):423.
Hurst, Charlotte H; Turnbull, Dionne; Xhelilaj, Kaltra; Myles, Sally; Pflughaupt, Robin L; Kopischke, Michaela; Davies, Paul; Jones, Susan; Robatzek, Silke; Zipfel, Cyril; Gronnier, Julien; Hemsley, Piers A (2023). S-acylation stabilizes ligand-induced receptor kinase complex formation during plant pattern-triggered immune signalling. bioRxiv 457756, University of Zurich.
Straub, Hervé; Zuber, Flavia; Eberl, Leo; Maniura-Weber, Katharina; Ren, Qun (2023). In Situ Investigation of Pseudomonas aeruginosa Biofilm Development: Interplay between Flow, Growth Medium, and Mechanical Properties of Substrate. ACS applied materials & interfaces, 15(2):2781-2791.
Eberl, Leo (2023). Rehabilitation of the ‘bad guys’ for biocontrol applications. Environmental Microbiology, 25(1):97-101.
Banerjee, Samiran; van der Heijden, Marcel G A (2023). Soil microbiomes and one health. Nature Reviews. Microbiology, 21(1):6-20.
Mattmann, Ove. Experimental Evolution of Escherichia coli using the predatory bacterium Bdellovibrio bacteriovorus. 2023, University of Zurich, Faculty of Science.
Ouedraogo, Inès; Lartaud, Marc; Baroux, Célia; Mosca, Gabriella; Delgado, Luciana; Leblanc, Oliver; Verdeil, Jean-Luc; Conéjéro, Geneviève; Autran, Daphné (2023). 3D cellular morphometrics of ovule primordium development in Zea mays reveal differential division and growth dynamics specifying megaspore mother cell singleness. Frontiers in Plant Science, 14:1174171.
Wiehlmann, Lutz; Klockgether, Jens; Hammerbacher, Anna-Silke; Salunkhe, Prabhakar; Horatzek, Sonja; Munder, Antje; Peilert, Janno Florian; Gulbins, Erich; Eberl, Leo; Tümmler, Burkhard (2023). A VirB4 ATPase of the mobile accessory genome orchestrates core genome-encoded features of physiology, metabolism, and virulence of Pseudomonas aeruginosa TBCF10839. Frontiers in Cellular and Infection Microbiology, 13:1234420.
Lai, Ting F; Ford, Rhian M; Huwiler, Simona (2023). Advances in cellular and molecular predatory biology of Bdellovibrio bacteriovorus six decades after discovery. Frontiers in Microbiology, 14:1168709.
Mühlenbeck, Henning; Tsutsui, Yuko; Lemmon, Mark A; Bender, Kyle W; Zipfel, Cyril (2023). Allosteric activation of the co-receptor BAK1 by the EFR receptor kinase initiates immune signaling. eLife:online.
Li, Leilei; Kaufmann, Moritz; Makechemu, Moffat; Van Poucke, Christof; De Keyser, Ellen; Uyttendaele, Mieke; Zipfel, Cyril; Cottyn, Bart; Pothier, Joël F (2023). Assessment of transcriptional reprogramming of lettuce roots in response to chitin soil amendment. Frontiers in Plant Science, 14:1158068.
Bellés-Sancho, Paula. Elucidation of the genetic determinants underlying Paraburkholderia phymatum's symbiotic ability and its high competitiveness in legume root infection. 2023, University of Zurich, Faculty of Science.
Pramanik, Dewi; Becker, Annette; Roessner, Clemens; Rupp, Oliver; Bogarín, Diego; Pérez-Escobar, Oscar Alejandro; Dirks-Mulder, Anita; Droppert, Kevin; Kocyan, Alexander; Smets, Erik; Gravendeel, Barbara (2023). Evolution and development of fruits of Erycina pusilla and other orchid species. PLoS ONE, 18(10):e0286846.
Abarca Cifuentes, Alicia. Family-wide evaluation of Arabidopsis thaliana Rapid Alkanization Factor (RALF) peptides and their implication in immunity. 2023, University of Zurich, Faculty of Science.
Kavagutti, Vinicius S; Bulzu, Paul-Adrian; Chiriac, Cecilia M; Salcher, Michaela M; Mukherjee, Indranil; Shabarova, Tanja; Grujčić, Vesna; Mehrshad, Maliheh; Kasalický, Vojtěch; Andrei, Adrian-Stefan; Jezberová, Jitka; Seďa, Jaromir; Rychtecký, Pavel; Znachor, Petr; Šimek, Karel; Ghai, Rohit (2023). High-resolution metagenomic reconstruction of the freshwater spring bloom. Microbiome, 11:15.
Shilling, Rebecca Elizabeth. Inhibition of BerB within B. cenocepacia H111 single cells and its consequences on the macrolony. 2023, University of Zurich, Faculty of Science.
Perseus, Lena. Investigating diurnal changes in the chromatin organization of A. thaliana and the involvement of linker histone H1. 2023, University of Zurich, Faculty of Science.
Straub, Hervé Jean. Should I stay or should I flow: Pseudomonas aeruginosa biofilm formation under flow in a microfluidic platform. 2023, University of Zurich, Faculty of Science.
Russo, Alessia. The genome assembly of Ophrys sphegodes to explore the genomic basis of rapid evolution in a mediterranean orchid. 2023, University of Zurich, Faculty of Science.
Adero, Mark; Tripathi, Jaindra Nath; Oduor, Richard; Zipfel, Cyril; Tripathi, Leena (2023). Transgenic expression of Arabidopsis ELONGATION FACTOR-TU RECEPTOR (AtEFR) gene in banana enhances resistance against Xanthomonas campestris pv. musacearum. PLoS ONE, 18(9):online.
Vukovic, Dijana (2023). Unsichtbare Netzwerke – Ein Blick in die Komplexe Welt der Bodenorganismen. ANG-Fokus:52-57.
Wen, Ying; Chairattanawat, Chayanee; Vo, Kieu Thi Xuan; Liu, Jiayou; Zhang, Jie; Pan, Ting; Kim, Do-Young; Martinoia, Enrico; Zhong, Chun-Yan; Wang, Mao-Hui; Jeon, Jong-Seong; Song, Won-Yong (2023). VOZ1 and VOZ2 transcription factors regulate arsenic tolerance and distribution in rice and Arabidopsis. Frontiers in Plant Science, 14:1209860.
Knapp, Deborah; Posch, Thomas (2023). Veränderung der N:P-Verhältnisse in Seen: Mögliche Konsequenzen auf die Nahrungsnetze. Aqua & Gas, 103(6):72-79.
Randall, Ricardo S; Jourdain, Claire; Nowicka, Anna; et al; Panatta, Martina; Santoro, Raffaella; Routh, Devin; Baroux, Célia (2022). Image analysis workflows to reveal the spatial organization of cell nuclei and chromosomes. Nucleus, 13(1):277-299.
Schnyder, Anya; Eberl, Leo; Agnoli, Kirsty (2022). Investigating the Biocontrol Potential of the Natural Microbiota of the Apple Blossom. Microorganisms, 10(12):2480.
Dirren-Pitsch, Gianna; Bühler, Dominique; Salcher, Michaela M; Bassin, Barbara; Le Moigne, Alizée; Schuler, Martina; Pernthaler, Jakob; Posch, Thomas (2022). FISHing for ciliates: Catalyzed reporter deposition fluorescence in situ hybridization for the detection of planktonic freshwater ciliates. Frontiers in Microbiology, 13:1070232.
Honegger, Rosmarie (2022). Lichens and Their Allies Past and Present. In: Scott, Barry; Mesarich, Carl. Plant relationships : Fungal-Plant Interactions. Cham: Springer (Bücher), 133-183.
Eisenhauer, Nico; Bender, S Franz; Calderón‐Sanou, Irene; de Vries, Franciska T; Lembrechts, Jonas J; Thuiller, Wilfried; Wall, Diana H; Zeiss, Romy; Bahram, Mohammad; Beugnon, Rémy; Burton, Victoria J; Crowther, Thomas W; Delgado‐Baquerizo, Manuel; Geisen, Stefan; Kardol, Paul; Krashevska, Valentyna; Martínez‐Muñoz, Carlos A; Patoine, Guillaume; Seeber, Julia; Soudzilovskaia, Nadejda A; Steinwandter, Michael; Sünnemann, Marie; Sun, Xin; van der Heijden, Marcel G A; Guerra, Carlos A; Potapov, Anton (2022). Frontiers in soil ecology—Insights from the World Biodiversity Forum 2022. Journal of Sustainable Agriculture and Environment, 1(4):245-261.
Fan, Li; Fröhlich, Katja; Melzer, Eric; Pruitt, Rory N; Albert, Isabell; Zhang, Lisha; Joe, Anna; Hua, Chenlei; Song, Yanyue; Albert, Markus; Kim, Sang-Tae; Weigel, Detlef; Zipfel, Cyril; Chae, Eunyoung; Gust, Andrea A; Nürnberger, Thorsten (2022). Genotyping-by-sequencing-based identification of Arabidopsis pattern recognition receptor RLP32 recognizing proteobacterial translation initiation factor IF1. Nature Communications, 13:1294.
Sotiropoulos, Alexandros G; Arango-Isaza, Epifanía; Ban, Tomohiro; Barbieri, Chiara; Bourras, Salim; Cowger, Christina; Czembor, Paweł C; Ben-David, Roi; Dinoor, Amos; Ellwood, Simon R; Graf, Johannes; Hatta, Koichi; Helguera, Marcelo; Sánchez-Martín, Javier; McDonald, Bruce A; Morgounov, Alexey I; Müller, Marion C; Shamanin, Vladimir; Shimizu, Kentaro K; Yoshihira, Taiki; Zbinden, Helen; Keller, Beat; Wicker, Thomas (2022). Global genomic analyses of wheat powdery mildew reveal association of pathogen spread with historical human migration and trade. Nature Communications, 13(1):4315.
Yu, Gang; Derkacheva, Maria; Rufian, Jose S; Brillada, Carla; Kowarschik, Kathrin; Jiang, Shushu; Derbyshire, Paul; Ma, Miaomiao; DeFalco, Thomas A; Morcillo, Rafael J L; Stransfeld, Lena; Wei, Yali; Zhou, Jian‐Min; Menke, Frank L H; Trujillo, Marco; Zipfel, Cyril; Macho, Alberto P (2022). The Arabidopsis E3 ubiquitin ligase PUB4 regulates BIK1 and is targeted by a bacterial type-III effector. The EMBO Journal, 41(23):e107257.
Wuest, Samuel E; Pires, Nuno D; Luo, Shan; Vasseur, Francois; Messier, Julie; Grossniklaus, Ueli; Niklaus, Pascal A (2022). Increasing plant group productivity through latent genetic variation for cooperation. PLoS Biology, 20(11):e3001842.
Noble, Jennifer A; Bielski, Nicholas V; Liu, Ming-Che James; DeFalco, Thomas A; Stegmann, Martin; Nelson, Andrew D L; McNamara, Kara; Sullivan, Brooke; Dinh, Khanhlinh K; Khuu, Nicholas; Hancock, Sarah; Shiu, Shin-Han; Zipfel, Cyril; Cheung, Alice Y; Beilstein, Mark A; Palanivelu, Ravishankar (2022). Evolutionary analysis of the LORELEI gene family in plants reveals regulatory subfunctionalization. Plant Physiology, 190(4):2539-2556.
Steiner, Elisabeth; Shilling, Rebecca E; Richter, Anja M; Schmid, Nadine; Fazli, Mustafa; Kaever, Volkhard; Jenal, Urs; Tolker-Nielsen, Tim; Eberl, Leo (2022). The BDSF quorum sensing receptor RpfR regulates Bep exopolysaccharide synthesis in Burkholderia cenocepacia via interaction with the transcriptional regulator BerB. npj Biofilms and Microbiomes, 8:93.
Ojosnegros, Sara; Alvarez, José Manuel; Grossmann, Jonas; Gagliardini, Valeria; Quintanilla, Luis G; Grossniklaus, Ueli; Fernández, Helena (2022). The Shared Proteome of the Apomictic Fern Dryopteris affinis ssp. affinis and Its Sexual Relative Dryopteris oreades. International Journal of Molecular Sciences, 23(22):14027.
Müller, Michelle Jessy; Dorst, Andrea; Paulus, Constanze; Khan, Imran; Sieber, Simon (2022). Catch-enrich-release approach for amine-containing natural products. Chemical Communications, 58(90):12560-12563.
Walder, Florian; Schmid, Marc W; Riedo, Judith; Valzano-Held, Alain Y; Banerjee, Samiran; Büchi, Lucie; Bucheli, Thomas D; van der Heijden, Marcel G A (2022). Soil microbiome signatures are associated with pesticide residues in arable landscapes. Soil Biology and Biochemistry, 174:108830.
Bulzu, Paul-Adrian; Kavagutti, Vinicius S; Andrei, Adrian-Stefan; Ghai, Rohit (2022). The Evolutionary Kaleidoscope of Rhodopsins. mSystems, 7(5):e0040522.
Mauch, Emanuel; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Complete Genome Sequence of an Uncultivated Freshwater Bacteroidota Lineage. Microbiology Resource Announcements, 11(10):e0076622.
Bernet, Julia; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Complete Genome Sequence of an Uncultivated Freshwater Flavobacterium sp. Strain. Microbiology Resource Announcements, 11(10):e0065922.
Ajvazi, Xhesida; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Study of Complete Genome Sequence of Uncultivated Hyphomonadaceae sp. Microbiology Resource Announcements, 11(10):e0076522.
Riedo, Judith; Herzog, Chantal; Banerjee, Samiran; Fenner, Kathrin; Walder, Florian; van der Heijden, Marcel G A; Bucheli, Thomas D (2022). Concerted Evaluation of Pesticides in Soils of Extensive Grassland Sites and Organic and Conventional Vegetable Fields Facilitates the Identification of Major Input Processes. Environmental Science & Technology, 56(19):13686-13695.
Alguacil, Maria del Mar; Schlaeppi, Klaus; López-García, Álvaro; van der Heijden, Marcel G A; Querejeta, José Ignacio (2022). Contrasting Responses of Arbuscular Mycorrhizal Fungal Families to Simulated Climate Warming and Drying in a Semiarid Shrubland. Microbial Ecology, 84(3):941-944.
Thieme, Michael; Brêchet, Arthur; Bourgeois, Yann; Keller, Bettina; Bucher, Etienne; Roulin, Anne C (2022). Experimentally heat‐induced transposition increases drought tolerance in Arabidopsis thaliana. New Phytologist, 236(1):182-194.
Liu, Yujie; Duarte, Gicele Silva; Sun, Qing; Gilgen, Anna Katarina; Wittwer, Raphael; van der Heijden, Marcel G A; Buchmann, Nina; Klaus, Valentin H (2022). Severe drought rather than cropping system determines litter decomposition in arable systems. Agriculture, Ecosystems & Environment, 338:108078.
Mecchia, Martin A; Rövekamp, Moritz; Giraldo-Fonseca, Alejandro; Meier, Dario; Gadient, Philippe; Vogler, Hannes; Limacher, Daria; Bowman, John L; Grossniklaus, Ueli (2022). The single Marchantia polymorpha FERONIA homolog reveals an ancestral role in regulating cellular expansion and integrity. Development, 149(19):dev200580.
Hasterok, Robert; Catalan, Pilar; Hazen, Samuel P; Roulin, Anne C; Vogel, John P; Wang, Kai; Mur, Luis A J (2022). Brachypodium: 20 years as a grass biology model system; the way forward? Trends in Plant Science, 27(10):1002-1016.
Rhodes, Jack; Zipfel, Cyril; Jones, Jonathan D G; Ngou, Bruno Pok Man (2022). Concerted actions of PRR- and NLR-mediated immunity. Essays in biochemistry, 66(5):501-511.
Bellés-Sancho, Paula; Liu, Yilei; Heiniger, Benjamin; von Salis, Elia; Eberl, Leo; Ahrens, Christian H; Zamboni, Nicola; Bailly, Aurélien; Pessi, Gabriella (2022). A novel function of the key nitrogen-fixation activator NifA in beta-rhizobia: Repression of bacterial auxin synthesis during symbiosis. Frontiers in Plant Science, 13:991548.
Purtschert-Montenegro, Gabriela; Cárcamo-Oyarce, Gerardo; Pinto-Carbó, Marta; Agnoli, Kirsty; Bailly, Aurélien; Eberl, Leo (2022). Pseudomonas putida mediates bacterial killing, biofilm invasion and biocontrol with a type IVB secretion system. Nature Microbiology, 7(10):1547-1557.
Cremer, Franziska; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Complete Genome Sequence from an Uncultivated Freshwater Elusimicrobiota Lineage. Microbiology Resource Announcements, 11(9):e0042622.
Zhu, Baoli; Karwautz, Clemens; Andrei, Adrian-Stefan; Klingl, Andreas; Pernthaler, Jakob; Lueders, Tillmann (2022). A novel Methylomirabilota methanotroph potentially couples methane oxidation to iodate reduction. mLife, 1(3):323-328.
Edlinger, Anna; Garland, Gina; Hartman, Kyle; Banerjee, Samiran; Degrune, Florine; García-Palacios, Pablo; Hallin, Sara; Valzano-Held, Alain; Herzog, Chantal; Jansa, Jan; Kost, Elena; Maestre, Fernando T; Pescador, David Sánchez; Philippot, Laurent; Rillig, Matthias C; Romdhane, Sana; Saghaï, Aurélien; Spor, Ayme; Frossard, Emmanuel; van der Heijden, Marcel G A (2022). Agricultural management and pesticide use reduce the functioning of beneficial plant symbionts. Nature Ecology and Evolution, 6(8):1145-1154.
Sakamoto, Takuya; Sakamoto, Yuki; Grob, Stefan; Slane, Daniel; Yamashita, Tomoe; Ito, Nanami; Oko, Yuka; Sugiyama, Tomoya; Higaki, Takumi; Hasezawa, Seiichiro; Tanaka, Maho; Matsui, Akihiro; Seki, Motoaki; Suzuki, Takamasa; Grossniklaus, Ueli; Matsunaga, Sachihiro (2022). Two-step regulation of centromere distribution by condensin II and the nuclear envelope proteins. Nature Plants, 8(8):940-953.
Cavallaro, Alessio; Rhoads, William J; Huwiler, Simona G; Stachler, Elyse; Hammes, Frederik (2022). Potential probiotic approaches to control Legionella in engineered aquatic ecosystems. FEMS Microbiology Ecology, 98(8):fiac071.
Müller, Marion C; Kunz, Lukas; Schudel, Seraina; Lawson, Aaron W; Kammerecker, Sandrine; Isaksson, Jonatan; Wyler, Michele; Graf, Johannes; Sotiropoulos, Alexandros G; Praz, Coraline R; Manser, Beatrice; Wicker, Thomas; Bourras, Salim; Keller, Beat (2022). Ancient variation of the AvrPm17 gene in powdery mildew limits the effectiveness of the introgressed rye Pm17 resistance gene in wheat. Proceedings of the National Academy of Sciences of the United States of America, 119(30):e2108808119.
Salomon, Matthias J; Watts-Williams, Stephanie J; McLaughlin, Michael J; Bücking, Heike; Singh, Brajesh K; Hutter, Imke; Schneider, Carolin; Martin, Francis M; Vosatka, Miroslav; Guo, Liangdong; Ezawa, Tatsuhiro; Saito, Masanori; Declerck, Stéphane; Zhu, Yong-Guan; Bowles, Timothy; Abbott, Lynette K; Smith, F Andrew; Cavagnaro, Timothy R; van der Heijden, Marcel G A (2022). Establishing a quality management framework for commercial inoculants containing arbuscular mycorrhizal fungi. iScience, 25(7):104636.
Liu, Shengen; García-Palacios, Pablo; Tedersoo, Leho; Guirado, Emilio; van der Heijden, Marcel G A; Wagg, Cameron; Chen, Dima; Wang, Qingkui; Wang, Juntao; Singh, Brajesh K; Delgado-Baquerizo, Manuel (2022). Phylotype diversity within soil fungal functional groups drives ecosystem stability. Nature Ecology and Evolution, 6(7):900-909.
Menardo, Fabrizio (2022). Understanding drivers of phylogenetic clustering and terminal branch lengths distribution in epidemics of Mycobacterium tuberculosis. eLife, 11:e76780.
Brecht, Sarah A; Kong, Xiang; Xia, Xin Rui; Shea, Damian; Nichols, Elizabeth Guthrie (2022). Non-target and suspect-screening analyses of hydroponic soybeans and passive samplers exposed to different watershed irrigation sources. Science of the Total Environment, 826:153754.
Köster, Philipp; DeFalco, Thomas A; Zipfel, Cyril (2022). Ca 2+ signals in plant immunity. The EMBO Journal, 41(12):e110741.
Yue, Zhi-Liang; Liu, Ning; Deng, Zhi-Ping; Zhang, Yu; Wu, Zhi-Ming; Zhao, Ji-Long; Sun, Ying; Wang, Zhi-Yong; Zhang, Sheng-Wei (2022). The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice. Current Biology, 32(11):2454-2466.e7.
Chiriac, Maria-Cecilia; Bulzu, Paul-Adrian; Andrei, Adrian-Stefan; Okazaki, Yusuke; Nakano, Shin-ichi; Haber, Markus; Kavagutti, Vinicius Silva; Layoun, Paul; Ghai, Rohit; Salcher, Michaela M (2022). Ecogenomics sheds light on diverse lifestyle strategies in freshwater CPR. Microbiome, 10(1):84.
Romero, Ferran; Cazzato, Sabrina; Walder, Florian; Vogelgsang, Susanne; Bender, S Franz; van der Heijden, Marcel G A (2022). Humidity and high temperature are important for predicting fungal disease outbreaks worldwide. New Phytologist, 234(5):1553-1556.
Krattinger, Simon G; Keller, Beat (2022). Oat genome — sequence of a superfood. Nature Plants, 8(6):602-603.
Rhodes, Jack; Roman, Andra-Octavia; Bjornson, Marta; Brandt, Benjamin; Derbyshire, Paul; Wyler, Michele; Schmid, Marc W; Menke, Frank L H; Santiago, Julia; Zipfel, Cyril (2022). Perception of a conserved family of plant signalling peptides by the receptor kinase HSL3. eLife, 11:e74687.
Posch, Thomas; Pitsch, Gianna; Bruni, Estelle P (2022). Protists: Ciliates. In: Reference Module in Earth Systems and Environmental Sciences. Amsterdam: Elsevier, 639-649.
Russo, Alessia; Mayjonade, Baptiste; Frei, Daniel; Potente, Giacomo; Kellenberger, Roman T; Frachon, Léa; Copetti, Dario; Studer, Bruno; Frey, Jürg E; Grossniklaus, Ueli; Schlüter, Philipp M (2022). Low-Input High-Molecular-Weight DNA Extraction for Long-Read Sequencing From Plants of Diverse Families. Frontiers in Plant Science, 13:883897.
Kim, Kyungyoon; Choi, Bae Young; Kang, Joohyun; Shim, Donghwan; Martinoia, Enrico; Lee, Youngsook (2022). Arabidopsis ABCG27 plays an essential role in flower and leaf development by modulating abscisic acid content. Physiologia Plantarum, 174(3):e13734.
Paszti, Sarah; Vitale, Alessandra; Liu, Yilei; Braunwalder, Rubina; Kalawong, Ratchara; Biner, Olivier; Pessi, Gabriella; Eberl, Leo (2022). Identification of Key Factors for Anoxic Survival of B. cenocepacia H111. International Journal of Molecular Sciences, 23(9):4560.
Krishna, Pilla Sankara; Woodcock, Stuart Daniel; Pfeilmeier, Sebastian; Bornemann, Stephen; Zipfel, Cyril; Malone, Jacob George (2022). Pseudomonas syringae addresses distinct environmental challenges during plant infection through the coordinated deployment of polysaccharides. Journal of Experimental Botany, 73(7):2206-2221.
Tatout, Christophe; Mougeot, Guillaume; Parry, Geraint; Baroux, Célia; Pradillo, Mónica; Evans, David (2022). The INDEPTH (Impact of Nuclear Domains on Gene Expression and Plant Traits) Academy: a community resource for plant science. Journal of Experimental Botany, 73(7):1926-1933.
Munglani, Gautam; Vogler, Hannes; Grossniklaus, Ueli (2022). Fast and flexible processing of large FRET image stacks using the FRET-IBRA toolkit. PLoS Computational Biology, 18(4):1009242.
DeFalco, Thomas A; Anne, Pauline; James, Sean R; Willoughby, Andrew C; Schwanke, Florian; Johanndrees, Oliver; Genolet, Yasmine; Derbyshire, Paul; Wang, Qian; Rana, Surbhi; Pullen, Anne-Marie; Menke, Frank L H; Zipfel, Cyril; Hardtke, Christian S; Nimchuk, Zachary L (2022). A conserved module regulates receptor kinase signalling in immunity and development. Nature Plants, 8(4):356-365.
Sun, Qing; Klaus, Valentin H; Wittwer, Raphaël; Liu, Yujie; van der Heijden, Marcel G A; Gilgen, Anna K; Buchmann, Nina (2022). Water uptake patterns of pea and barley responded to drought but not to cropping systems. Biogeosciences, 19(6):1853-1869.
Walker, Timothy M; Miotto, Paolo; Köser, Claudio U; Fowler, Philip W; Knaggs, Jeff; Iqbal, Zamin; Hunt, Martin; Chindelevitch, Leonid; Farhat, Maha R; Cirillo, Daniela Maria; Comas, Iñaki; Posey, James; Omar, Shaheed V; Peto, Timothy Ea; Suresh, Anita; Uplekar, Swapna; Laurent, Sacha; Colman, Rebecca E; Nathanson, Carl-Michael; Zignol, Matteo; Walker, Ann Sarah; CRyPTIC Consortium; Seq&Treat Consortium; Crook, Derrick W; Ismail, Nazir; Rodwell, Timothy C (2022). The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: A genotypic analysis. The Lancet Microbe, 3(4):e265-e273.
Secchi, Eleonora; Savorana, Giovanni; Vitale, Alessandra; Eberl, Leo; Stocker, Roman; Rusconi, Roberto (2022). The structural role of bacterial eDNA in the formation of biofilm streamers. Proceedings of the National Academy of Sciences of the United States of America, 119(12):e2113723119.
Yudina, Sophia V; Kocyan, Alexander; Truong, Ba Vuong; Vislobokov, Nikolay A; Lyskov, Dmitry F; Nuraliev, Maxim S; Remizowa, Margarita V (2022). Structure and Development of Flowers and Inflorescences in Burmannia (Burmanniaceae, Dioscoreales). Frontiers in Plant Science, 13:849276.
Bischof, Sylvain (2022). Bypassing reproductive barriers by chemical epimutagenesis. Plant Cell, 34(3):947-948.
Grossniklaus, Ueli. Gentechnikgesetz und wissenschaftliche Logik. In: NZZ, 243, 2 March 2022, 19.
Schumacher, Isabel; Menghini, Damian; Ovinnikov, Serguei; Hauenstein, Mareike; Fankhauser, Niklaus; Zipfel, Cyril; Hörtensteiner, Stefan; Aubry, Sylvain (2022). Evolution of chlorophyll degradation is associated with plant transition to land. The Plant Journal, 109(6):1473-1488.
Büchi, Lucie; Walder, Florian; Banerjee, Samiran; Colombi, Tino; van der Heijden, Marcel G A; Keller, Thomas; Charles, Raphaël; Six, Johan (2022). Pedoclimatic factors and management determine soil organic carbon and aggregation in farmer fields at a regional scale. Geoderma, 409:115632.
Gaurav, Kumar; Arora, Sanu; Silva, Paula; et al; Sánchez-Martín, Javier; Widrig, Victoria; Keller, Beat (2022). Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement. Nature Biotechnology, 40(3):422-431.
Sanchez‐Vera, Victoria; Landberg, Katarina; Lopez‐Obando, Mauricio; Thelander, Mattias; Lagercrantz, Ulf; Muñoz‐Viana, Rafael; Schmidt, Anja; Grossniklaus, Ueli; Sundberg, Eva (2022). The Physcomitrium patens egg cell expresses several distinct epigenetic components and utilizes homologues of BONOBO genes for cell specification. New Phytologist, 233(6):2614-2628.
Wicker, Thomas; Stritt, Christoph; Sotiropoulos, Alexandros G; Poretti, Manuel; Pozniak, Curtis J; Walkowiak, Sean; Gundlach, Heidrun; Stein, Nils (2022). Transposable Element Populations Shed Light on the Evolutionary History of Wheat and the Complex Co-Evolution of Autonomous and Non-Autonomous Retrotransposons. Advanced Genetics, 3(1):2100022.
Neubauer, Anne; Ruaud, Stéphanie; Waller, Manuel; Frangedakis, Eftychios; Li, Fay‐Wei; Nötzold, Svenja I; Wicke, Susann; Bailly, Aurélien; Szövényi, Péter (2022). Step‐by‐step protocol for the isolation and transient transformation of hornwort protoplasts. Applications in Plant Sciences:online.
Frantal, Daniela; Agatha, Sabine; Beisser, Daniela; Boenigk, Jens; Darienko, Tatyana; Dirren-Pitsch, Gianna; Filker, Sabine; Gruber, Michael; Kammerlander, Barbara; Nachbaur, Laura; Scheffel, Ulrike; Stoeck, Thorsten; Qian, Kuimei; Weißenbacher, Birgit; Pröschold, Thomas; Sonntag, Bettina (2022). Molecular Data Reveal a Cryptic Diversity in the Genus Urotricha (Alveolata, Ciliophora, Prostomatida), a Key Player in Freshwater Lakes, With Remarks on Morphology, Food Preferences, and Distribution. Frontiers in Microbiology, 12:787290.
Qiu, Qingyan; Bender, S Franz; Mgelwa, Abubakari Said; Hu, Yalin (2022). Arbuscular mycorrhizal fungi mitigate soil nitrogen and phosphorus losses: A meta-analysis. Science of the Total Environment, 807(Pt 1):150857.
De Gruyter, Johan; Weedon, James T; Elst, Evelyne M; Geisen, Stefan; van der Heijden, Marcel G A; Verbruggen, Erik (2022). Arbuscular mycorrhizal inoculation and plant response strongly shape bacterial and eukaryotic soil community trajectories. Soil Biology and Biochemistry, 165:108524.
Gualdi, Stefano; Agnoli, Kirsty; Vitale, Alessandra; Higgins, Steven; Eberl, Leo (2022). Identification of genes required for gold and silver tolerance in Burkholderia cenocepacia H111 by transposon sequencing. Environmental Microbiology, 24(2):737-751.
Bender, S Franz (2022). Pulling the strings from underground? Soil biota and plant growth–defense tradeoffs. New Phytologist, 233(3):1015-1017.
Krauss, M; Wiesmeier, M; Don, A; Cuperus, F; Gattinger, A; Gruber, S; Haagsma, W K; Peigné, J; Palazzoli, M Chiodelli; Schulz, F; van der Heijden, Marcel G A; Vincent-Caboud, L; Wittwer, R A; Zikeli, S; Steffens, M (2022). Reduced tillage in organic farming affects soil organic carbon stocks in temperate Europe. Soil and Tillage Research, 216:105262.
Hofer, Cyrill. Long-Read MinION data for microbial community analysis. 2022, University of Zurich, Faculty of Science.
Gronnier, Julien; Franck, Christina Maria; Stegmann, Martin; DeFalco, Thomas A; Abarca, Alicia; von Arx, Michelle; Dünser, Kai; Lin, Wenwei; Yang, Zhenbiao; Kleine-Vehn, Jürgen; Ringli, Christoph; Zipfel, Cyril (2022). Regulation of immune receptor kinase plasma membrane nanoscale organization by a plant peptide hormone and its receptors. eLife, 22:e74162.
Dindas, Julian; DeFalco, Thomas A; Yu, Gang; Zhang, Lu; David, Pascale; Bjornson, Marta; Thibaud, Marie-Christine; Custódio, Valéria; Castrillo, Gabriel; Nussaume, Laurent; Macho, Alberto P; Zipfel, Cyril (2022). Direct inhibition of phosphate transport by immune signaling in Arabidopsis. Current Biology, 32(2):488-495.
Saghaï, Aurélien; Banjeree, Samiran; Degrune, Florine; Edlinger, Anna; García‐Palacios, Pablo; Garland, Gina; van der Heijden, Marcel G A; Herzog, Chantal; Maestre, Fernando T; Pescador, David S; Philippot, Laurent; Rillig, Matthias C; Romdhane, Sana; Hallin, Sara (2022). Diversity of archaea and niche preferences among putative ammonia‐oxidizing Nitrososphaeria dominating across European arable soils. Environmental Microbiology, 24(1):341-356.
Salomon, M J; Demarmels, R; Watts-Williams, S J; McLaughlin, M J; Kafle, A; Ketelsen, C; Soupir, A; Bücking, Heike; Cavagnaro, T R; van der Heijden, Marcel G A (2022). Global evaluation of commercial arbuscular mycorrhizal inoculants under greenhouse and field conditions. Applied Soil Ecology, 169:104225.
Stritt, Christoph; Gimmi, Elena L; Wyler, Michele; Bakali, Abdelmonaim H; Skalska, Aleksandra; Hasterok, Robert; Mur, Luis A J; Pecchioni, Nicola; Roulin, Anne C (2022). Migration without interbreeding: Evolutionary history of a highly selfing Mediterranean grass inferred from whole genomes. Molecular Ecology, 31(1):70-85.
Grob, Stefan (2022). Tough Tissue Hi-C. In: Sexton, Tom. Spatial Genome Organization. New York: Springer, 35-50.
Schubert, Jasmin; Li, Yanru; Mendes, Marta A; Fei, Danli; Dickinson, Hugh; Moore, Ian; Baroux, Célia (2022). A procedure for Dex-induced gene transactivation in Arabidopsis ovules. Plant Methods, 18:41.
Mittelstrass, Jana. Biotic and abiotic factors that drive the assembly of microbiomes in two plant hosts. 2022, University of Zurich, Faculty of Science.
Della Casa, Philippe; Carlevaro, Eva; Dufraisse, Alexa; Jacquat, Christiane; Sauerbier, Martin; Tinner, Willy; Vescovi, Elisa (2022). Dal proxy ambientale alla testimonianza archeologica: un approcio multidisciplinare alle storia del paesaggio e dell'insediamento nella Leventina (Ticino) e nella zona subalpina. Rivista di Scienze Preistoriche, 72(2):53-65.
Honegger, Rosmarie (2022). Die Entdeckung der Chloroplastenwanderung in Vallisneria und andere Trouvaillen aus dem Nachlass von Gustav Senn (1875–1945). Bauhinia, 28:63-74.
Sadriu Hoti, Adeline; Hasaj, Elmedina; Ibrahimi, Leonora; Heqimi, Sabina; Schneller, Jakob; Bachofen, Reinhard (2022). Drought stress, water table and photosynthetic activity of peat moss measured by fast fluorescence in alpine peatlands. Trends in Photochemistry & Photobiology, 21:41-54.
Le Moigne, Alizée. Emergent complexity in microbial community assembly: insights from taxonomic and functional properties. 2022, University of Zurich, Faculty of Science.
Schumacher, Isabel Maria. Evolution of chlorophyll degradation in viridiplantae. 2022, University of Zurich, Faculty of Science.
Bühler, Dominique. FISHing for Ciliates - fluorescence in situ hybridization for the detection of planktonic freshwater ciliates. 2022, University of Zurich, Faculty of Science.
Sotiropoulos, Alexandros Georgios. Global population analyses of wheat powdery mildew using whole genome sequencing data. 2022, University of Zurich, Faculty of Science.
Purtschert-Montenegro, Gabriela. Identification of a novel bacterial killing nanomachine in Pseudomonas putida IsoF. 2022, University of Zurich, Faculty of Science.
Herzog, Chantal. Impact of agricultural intensification on soil biogeochemistry and multifunctionality. 2022, University of Zurich, Faculty of Science.
Stirnemann, Eva Marina. Impaired ABCC5/ MRP5-mediated inositol hexakisphosphate transport and its effects in Arabidopsis thaliana. 2022, University of Zurich, Faculty of Science.
Kalawong, Ratchara. Influence of putisolvin on membrane vesicle and nanotube formation in Pseudomonas putida IsoF. 2022, University of Zurich, Faculty of Science.
Romdhane, Sana; Spor, Aymé; Banerjee, Samiran; Breuil, Marie-Christine; Bru, David; Chabbi, Abad; Hallin, Sara; van der Heijden, Marcel G A; Saghai, Aurélien; Philippot, Laurent (2022). Land-use intensification differentially affects bacterial, fungal and protist communities and decreases microbiome network complexity. Environmental Microbiome, 17:1.
Stöckle, Dorothee; Reyes-Hernández, Blanca Jazmin; Vilches Barro, Amaya; Nenadić, Milica; Winter, Zsofiá; Marc-Martin, Sophie; Bald, Lotte; Ursache, Robertas; Fujita, Satoshi; Maizel, Alexis; Vermeer, Joop E M (2022). Microtubule-based perception of mechanical conflicts controls plant organ morphogenesis. Science Advances, 8(6):eabm497444.
Manser, Beatrice. Molecular characterization of Avr function and plant recognition on the wheat powdery mildew effector AvrPm2. 2022, University of Zurich, Faculty of Science.
Gschwend, Florian. Next-generation soil quality monitoring : metabarcoding of soil bacterial and fungal communities for long-term soil quality monitoring. 2022, University of Zurich, Faculty of Science.
Riedo, Judith. Occurrence of pesticides in agricultural soils and their influence on beneficial soil microorganisms. 2022, University of Zurich, Faculty of Science.
Kofler, Xeniya Valeriyivna. Pollinator-mediated mating system shifts in Brassica rapa. 2022, University of Zurich, Faculty of Science.
Toda, Misato. Soil microbes as regulators of nutrient cycling in agroecosystems. 2022, University of Zurich, Faculty of Science.
Wyler, Michele. The epigenetic impact of transposable elements on gene expression. 2022, University of Zurich, Faculty of Science.
Kolodziej, Markus C; Singla, Jyoti; Sánchez-Martín, Javier; Zbinden, Helen; Šimková, Hana; Karafiátová, Miroslava; Doležel, Jaroslav; Gronnier, Julien; Poretti, Manuel; Glauser, Gaétan; Zhu, Wangsheng; Köster, Philipp; Zipfel, Cyril; Wicker, Thomas; Krattinger, Simon G; Keller, Beat (2021). A membrane-bound ankyrin repeat protein confers race-specific leaf rust disease resistance in wheat. Nature Communications, 12:956.
Gimeno, Alejandro; Stanley, Claire E; Ngamenie, Zacharie; Hsung, Ming-Hui; Walder, Florian; Schmieder, Stefanie S; Bindschedler, Saskia; Junier, Pilar; Keller, Beat; Vogelgsang, Susanne (2021). A versatile microfluidic platform measures hyphal interactions between Fusarium graminearum and Clonostachys rosea in real-time. Communications Biology, 4:262.
Pröschold, Thomas; Rieser, Daniel; Darienko, Tatyana; Nachbaur, Laura; Kammerlander, Barbara; Qian, Kuimei; Pitsch, Gianna; Bruni, Estelle Patricia; Qu, Zhishuai; Forster, Dominik; Rad-Menendez, Cecilia; Posch, Thomas; Stoeck, Thorsten; Sonntag, Bettina (2021). An integrative approach sheds new light onto the systematics and ecology of the widespread ciliate genus Coleps (Ciliophora, Prostomatea). Scientific Reports, 11:5916.
Sailer, Christian; Tiberi, Simone; Schmid, Bernhard; Stöcklin, Jürg; Grossniklaus, Ueli (2021). Apomixis and genetic background affect distinct traits in Hieracium pilosella L. grown under competition. BMC Biology, 19:177.
Saikia, Eashan; Läubli, Nino F; Vogler, Hannes; Rüggeberg, Markus; Herrmann, Hans J; Burgert, Ingo; Burri, Jan T; Nelson, Bradley J; Grossniklaus, Ueli; Wittel, Falk K (2021). Correction to: Mechanical factors contributing to the Venus flytrap’s rate-dependent response to stimuli. Biomechanics and Modeling in Mechanobiology, 20(6):2299.
Müller, Marion C; Kunz, Lukas; Graf, Johannes; Schudel, Seraina; Keller, Beat (2021). Host Adaptation Through Hybridization: Genome Analysis of Triticale Powdery Mildew Reveals Unique Combination of Lineage-Specific Effectors. Molecular Plant-Microbe Interactions, 34(12):1350-1357.
Georgiou, Antri; Sieber, Simon; Hsiao, Chien-Chi; Grayfer, Tatyana; Gorenflos López, Jacob L; Gademann, Karl; Eberl, Leo; Bailly, Aurélien (2021). Leaf nodule endosymbiotic Burkholderia confer targeted allelopathy to their Psychotria hosts. Scientific Reports, 11:22465.
Saikia, Eashan; Läubli, Nino F; Vogler, Hannes; Rüggeberg, Markus; Herrmann, Hans J; Burgert, Ingo; Burri, Jan T; Nelson, Bradley J; Grossniklaus, Ueli; Wittel, Falk K (2021). Mechanical factors contributing to the Venus flytrap’s rate-dependent response to stimuli. Biomechanics and Modeling in Mechanobiology, 20(6):2287-2297.
Rhodes, Jack; Yang, Huanjie; Moussu, Steven; Boutrot, Freddy; Santiago, Julia; Zipfel, Cyril (2021). Perception of a divergent family of phytocytokines by the Arabidopsis receptor kinase MIK2. Nature Communications, 12(1):705.
Abrouk, Michael; Athiyannan, Naveenkumar; Müller, Thomas; Pailles, Yveline; Stritt, Christoph; Roulin, Anne C; Chu, Chenggen; Liu, Shuyu; Morita, Takumi; Handa, Hirokazu; Poland, Jesse; Keller, Beat; Krattinger, Simon G (2021). Population genomics and haplotype analysis in spelt and bread wheat identifies a gene regulating glume color. Communications Biology, 4:375.
Cadot, Selma; Guan, Hang; Bigalke, Moritz; Walser, Jean-Claude; Jander, Georg; Erb, Matthias; van der Heijden, Marcel G A; Schlaeppi, Klaus (2021). Specific and conserved patterns of microbiota-structuring by maize benzoxazinoids in the field. Microbiome, 9:103.
Piazza, Stefano; Campa, Manuela; Pompili, Valerio; Costa, Lorenza Dalla; Salvagnin, Umberto; Nekrasov, Vladimir; Zipfel, Cyril; Malnoy, Mickael (2021). The Arabidopsis pattern recognition receptor EFR enhances fire blight resistance in apple. Horticulture Research, 8:204.
Mittelstrass, Jana; Sperone, F Gianluca; Horton, Matthew W (2021). Using transects to disentangle the environmental drivers of plant‐microbiome assembly. Plant, Cell & Environment, 44(12):3515-3525.
Fernández, Helena; Grossmann, Jonas; Gagliardini, Valeria; Feito, Isabel; Rivera, Alejandro; Rodríguez, Lucía; Quintanilla, Luis G; Quesada, Víctor; Cañal, María Jesús; Grossniklaus, Ueli (2021). Sexual and Apogamous Species of Woodferns Show Different Protein and Phytohormone Profiles. Frontiers in Plant Science, 12:718932.
Querejeta, José Ignacio; Schlaeppi, Klaus; López‐García, Álvaro; Ondoño, Sara; Prieto, Iván; van der Heijden, Marcel G A; del Mar Alguacil, María (2021). Lower relative abundance of ectomycorrhizal fungi under a warmer and drier climate is linked to enhanced soil organic matter decomposition. New Phytologist, 232(3):1399-1413.
Biała-Leonhard, Wanda; Zanin, Laura; Gottardi, Stefano; de Brito Francisco, Rita; Venuti, Silvia; Valentinuzzi, Fabio; Mimmo, Tanja; Cesco, Stefano; Bassin, Barbara; Martinoia, Enrico; Pinton, Roberto; Jasiński, Michał; Tomasi, Nicola (2021). Identification of an Isoflavonoid Transporter Required for the Nodule Establishment of the Rhizobium-Fabaceae Symbiotic Interaction. Frontiers in Plant Science, 12:758213.
Fernández Castro, Bieito; Bouffard, Damien; Troy, Cary; Ulloa, Hugo N; Piccolroaz, Sebastiano; Sepúlveda Steiner, Oscar; Chmiel, Hannah E; Serra Moncadas, Lucas; Lavanchy, Sébastien; Wüest, Alfred (2021). Seasonality modulates wind-driven mixing pathways in a large lake. Communications Earth & Environment, 2(1):215.
Abarca, Alicia; Franck, Christina Maria; Zipfel, Cyril (2021). Family-wide evaluation of RAPID ALKALINIZATION FACTOR peptides. Plant Physiology, 187(2):996-1010.
Säle, Verena; Palenzuela, Javier; Azcón-Aguilar, Concepción; Sánchez-Castro, Iván; da Silva, Gladstone Alves; Seitz, Benjamin; Sieverding, Ewald; van der Heijden, Marcel G A; Oehl, Fritz (2021). Ancient lineages of arbuscular mycorrhizal fungi provide little plant benefit. Mycorrhiza, 31(5):559-576.
Birch, Joanne L; Kocyan, Alexander (2021). Biogeography of the monocotyledon astelioid clade (Asparagales): A history of long-distance dispersal and diversification with emerging habitats. Molecular Phylogenetics and Evolution, 163:107203.
Banerjee, Samiran; Zhao, Cheng; Kirkby, Clive A; Coggins, Sam; Zhao, Shuai; Bissett, Andrew; van der Heijden, Marcel G A; Kirkegaard, John A; Richardson, Alan E (2021). Microbial interkingdom associations across soil depths reveal network connectivity and keystone taxa linked to soil fine-fraction carbon content. Agriculture, Ecosystems & Environment, 320:107559.
DeFalco, Thomas A; Zipfel, Cyril (2021). Molecular mechanisms of early plant pattern-triggered immune signaling (Corrections). Molecular Cell, 81(20):4346.
Krempaska, Natalia; Horňák, Karel; Silva, Marisa O D; Pernthaler, Jakob (2021). Spatial microheterogeneity and selective microbial consumption of dissolved free amino acids in an oligomesotrophic lake. Limnology and Oceanography, 66(10):3728-3739.
Poretti, Manuel; Sotiropoulos, Alexandros G; Graf, Johannes; Jung, Esther; Bourras, Salim; Krattinger, Simon G; Wicker, Thomas (2021). Comparative Transcriptome Analysis of Wheat Lines in the Field Reveals Multiple Essential Biochemical Pathways Suppressed by Obligate Pathogens. Frontiers in Plant Science, 12:720462.
Schellenberger, Romain; Crouzet, Jérôme; Nickzad, Arvin; Shu, Lin-Jie; Kutschera, Alexander; Gerster, Tim; Borie, Nicolas; Dawid, Corinna; Cloutier, Maude; Villaume, Sandra; Dhondt-Cordelier, Sandrine; Hubert, Jane; Cordelier, Sylvain; Mazeyrat-Gourbeyre, Florence; Schmid, Christian; Ongena, Marc; Renault, Jean-Hugues; Haudrechy, Arnaud; Hofmann, Thomas; Baillieul, Fabienne; Clément, Christophe; Zipfel, Cyril; Gauthier, Charles; Déziel, Eric; Ranf, Stefanie; Dorey, Stéphan (2021). Bacterial rhamnolipids and their 3-hydroxyalkanoate precursors activate Arabidopsis innate immunity through two independent mechanisms. Proceedings of the National Academy of Sciences of the United States of America, 118(39):e2101366118.
Bender, Kyle W; Couto, Daniel; Kadota, Yasuhiro; Macho, Alberto P; Sklenar, Jan; Derbyshire, Paul; Bjornson, Marta; DeFalco, Thomas A; Petriello, Annalise; Font Farre, Maria; Schwessinger, Benjamin; Ntoukakis, Vardis; Stransfeld, Lena; Jones, Alexandra M E; Menke, Frank L H; Zipfel, Cyril (2021). Activation loop phosphorylaton of a non-RD receptor kinase initiates plant innate immune signaling. Proceedings of the National Academy of Sciences of the United States of America, 118(38):e2108242118.
Oggenfuss, Ursula; Badet, Thomas; Wicker, Thomas; Hartmann, Fanny E; Singh, Nikhil Kumar; Abraham, Leen; Karisto, Petteri; Vonlanthen, Tiziana; Mundt, Christopher; McDonald, Bruce A; Croll, Daniel (2021). A population-level invasion by transposable elements triggers genome expansion in a fungal pathogen. eLife, 10:e69249.
Sieber, Simon; Mathew, Anugraha; Jenul, Christian; Kohler, Tobias; Bär, Max; Carrión, Víctor J; Cazorla, Francisco M; Stalder, Urs; Hsieh, Ya-Chu; Bigler, Laurent; Eberl, Leo; Gademann, Karl (2021). Mitigation of Pseudomonas syringae virulence by signal inactivation. Science Advances, 7(37):eabg2293.
Bräunlich, Stephanie; Koller, Teresa; Glauser, Gaétan; Krattinger, Simon G; Keller, Beat (2021). Expression of the wheat disease resistance gene Lr34 in transgenic barley leads to accumulation of abscisic acid at the leaf tip. Plant Physiology and Biochemistry, 166:950-957.
Yang, Bing; Banerjee, Samiran; Herzog, Chantal; Ramírez, Andrea Corona; Dahlin, Paul; van der Heijden, Marcel G A (2021). Impact of land use type and organic farming on the abundance, diversity, community composition and functional properties of soil nematode communities in vegetable farming. Agriculture, Ecosystems & Environment, 318:107488.
DeFalco, Thomas A; Zipfel, Cyril (2021). Molecular mechanisms of early plant pattern-triggered immune signaling. Molecular Cell, 81(17):3449-3467.
Wong, Gerard C L; Antani, Jyot D; Lele, Pushkar P; Chen, Jing; et al; Carrara, Francesco; Stocker, Roman; Eberl, Leo (2021). Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation. Physical Biology, 18(5):051501.
Jia, Yangyang; van der Heijden, Marcel G A; Wagg, Cameron; Feng, Gu; Walder, Florian (2021). Symbiotic soil fungi enhance resistance and resilience of an experimental grassland to drought and nitrogen deposition. Journal of Ecology, 109(9):3171-3181.
Bischof, Sylvain (2021). An open EAR for polycomb repressive complexes. Plant Cell, 33(8):2517-2518.
Ricroch, Agnes; Aerni, Philipp; Chopra, Surinder; Kuntz, Marcel (2021). Exploring the Roots of the Old GMO Narrative and Why Young People Have Started to Ask Critical Questions. In: Ricroch, Agnes; Chopra, Surinder; Kuntz, Marcel. Plant Biotechnology : Experience and Future Prospects. Cham: Springer, 277-304.
Hosoya, Hiromi; Schaefer, Markus; Aerni, Philipp (2021). The Industrious City Urban Industry in the Digital Age. In: Hosoya, Hiromi; Schaefer, Markus. The Industrious City Urban Industry in the Digital Age. Zurich: Lars Müller Publishers, 105-115.
Aerni, Philipp. Mit stereotypem Denken in der Diskussion um den Stadt-Land-Graben verkennt man die komplexe Realität. In: NZZ, 27 August 2021, 21.
Knapp, Deborah; Fernández Castro, Bieito; Marty, Daniel; Loher, Eugen; Köster, Oliver; Wüest, Alfred; Posch, Thomas (2021). The Red Harmful Plague in Times of Climate Change: Blooms of the Cyanobacterium Planktothrix rubescens Triggered by Stratification Dynamics and Irradiance. Frontiers in Microbiology, 12:705914.
Florez-Rueda, Ana Marcela; Fiscalini, Flurin; Roth, Morgane; Grossniklaus, Ueli; Städler, Thomas (2021). Endosperm and Seed Transcriptomes Reveal Possible Roles for Small RNA Pathways in Wild Tomato Hybrid Seed Failure. Genome Biology and Evolution, 13(8):evab107.
Georgieva, Maria; Heinonen, Tytti; Vitale, Alessandra; Hargraves, Simone; Causevic, Senka; Pillonel, Trestan; Eberl, Leo; Widmann, Christian; Jacquier, Nicolas (2021). Bacterial surface properties influence the activity of the TAT-RasGAP317-326 antimicrobial peptide. iScience, 24:102923.
Menghini, Damian; Aubry, Sylvain (2021). De novo transcriptome assembly data of the marine bioluminescent dinoflagellate Pyrocystis lunula. Data in Brief, 37:107254.
Qiu, Liping; Zhang, Qian; Zhu, Hansong; Reich, Peter B; Banerjee, Samiran; van der Heijden, Marcel G A; Sadowsky, Michael J; Ishii, Satoshi; Jia, Xiaoxu; Shao, Mingan; Liu, Baoyuan; Jiao, Huan; Li, Haiqiang; Wei, Xiaorong (2021). Erosion reduces soil microbial diversity, network complexity and multifunctionality. The ISME journal, 15(8):2474-2489.
Butaitė, Elena; Kramer, Jos; Kümmerli, Rolf (2021). Local adaptation, geographical distance and phylogenetic relatedness: Assessing the drivers of siderophore‐mediated social interactions in natural bacterial communities. Journal of Evolutionary Biology, 34(8):1266-1278.
Riar, Amandeep K; Chhuneja, Parveen; Keller, Beat; Singh, Kuldeep (2021). Mechanism of leaf rust resistance in wheat wild relatives, Triticum monococcum L. and T. boeoticum L. Plant Genetic Resources, 19(4):320-327.
Sánchez-Martín, Javier; Keller, Beat (2021). NLR immune receptors and diverse types of non-NLR proteins control race-specific resistance in Triticeae. Current Opinion in Plant Biology, 62:102053.
Wittwer, Raphaël A; Bender, S Franz; Hartman, Kyle; Hydbom, Sofia; Lima, Ruy A A; Loaiza, Viviana; Nemecek, Thomas; Oehl, Fritz; Olsson, Pål Axel; Petchey, Owen; Prechsl, Ulrich E; Schlaeppi, Klaus; Scholten, Thomas; Seitz, Steffen; Six, Johan; van der Heijden, Marcel G A (2021). Organic and conservation agriculture promote ecosystem multifunctionality. Science Advances, 7(34):eabg6995.
Stritt, Christoph; Thieme, Michael; Roulin, Anne C (2021). Rare transposable elements challenge the prevailing view of transposition dynamics in plants. American Journal of Botany, 108(8):1310-1314.
Mühlenbeck, Henning; Bender, Kyle W; Zipfel, Cyril (2021). Importance of tyrosine phosphorylation for transmembrane signaling in plants. Biochemical Journal, 478(14):2759-2774.
Hug, Sebastian; Liu, Yilei; Heiniger, Benjamin; Bailly, Aurélien; Ahrens, Christian H; Eberl, Leo; Pessi, Gabriella (2021). Differential Expression of Paraburkholderia phymatum Type VI Secretion Systems (T6SS) Suggests a Role of T6SS-b in Early Symbiotic Interaction. Frontiers in Plant Science, 12:699590.
Mascher, Martin; Wicker, Thomas; Jenkins, Jerry; Plott, Christopher; Lux, Thomas; Koh, Chu Shin; Ens, Jennifer; Gundlach, Heidrun; Boston, Lori B; Tulpová, Zuzana; Holden, Samuel; Hernández-Pinzón, Inmaculada; Scholz, Uwe; Mayer, Klaus F X; Spannagl, Manuel; Pozniak, Curtis J; Sharpe, Andrew G; Šimková, Hana; Moscou, Matthew J; Grimwood, Jane; Schmutz, Jeremy; Stein, Nils (2021). Long-read sequence assembly: a technical evaluation in barley. Plant Cell, 33(6):1888-1906.
Bellés-Sancho, Paula; Lardi, Martina; Liu, Yilei; Eberl, Leo; Zamboni, Nicola; Bailly, Aurélien; Pessi, Gabriella (2021). Metabolomics and Dual RNA-Sequencing on Root Nodules Revealed New Cellular Functions Controlled by Paraburkholderia phymatum NifA. Metabolites, 11(7):455.
Bischof, Sylvain (2021). How did the soybean genome evolve? Plant Cell, 33(5):1399-1400.
Cosme, Marco; Fernández, Iván; Declerck, Stéphane; van der Heijden, Marcel G A; Pieterse, Corné M J (2021). A coumarin exudation pathway mitigates arbuscular mycorrhizal incompatibility in Arabidopsis thaliana. Plant molecular biology, 106(4-5):319-334.
Mitre, Letícia Kuster; Teixeira‐Silva, Natália Sousa; Rybak, Katarzyna; Magalhães, Diogo Maciel; de Souza‐Neto, Reinaldo Rodrigues; Robatzek, Silke; Zipfel, Cyril; de Souza, Alessandra Alves (2021). The Arabidopsis immune receptor EFR increases resistance to the bacterial pathogens Xanthomonas and Xylella in transgenic sweet orange. Plant Biotechnology Journal, 19(7):1294-1296.
Simonini, Sara; Bemer, Marian; Bencivenga, Stefano; Gagliardini, Valeria; Pires, Nuno D; Desvoyes, Bénédicte; van der Graaff, Eric; Gutierrez, Crisanto; Grossniklaus, Ueli (2021). The Polycomb group protein MEDEA controls cell proliferation and embryonic patterning in Arabidopsis. Developmental Cell, 56(13):1945-1960.e7.
Aubry, Sylvain; Christ, Bastien; Kräutler, Bernhard; Martinoia, Enrico; Thomas, Howard; Zipfel, Cyril (2021). An evergreen mind and a heart for the colors of fall. Journal of Experimental Botany, 72(13):4625-4633.
Bjornson, Marta; Zipfel, Cyril (2021). Plant immunity: Crosstalk between plant immune receptors. Current Biology, 31(12):R796-R798.
Baroux, Célia (2021). Three-dimensional genome organization in epigenetic regulations: cause or consequence? Current Opinion in Plant Biology, 61:102031.
Transitioning to Decent Work and Economic Growth. Edited by: Aerni, Philipp; Stavridou, Marianthe; Schluep, Isabelle (2021). Basel: MDPI.
Aerni, Philipp (2021). “Business as Part of the Solution”: SDG 8 Challenges textbook Views on Sustainable development". In: Aermi, Philipp; Stavridou, Marianthe; Schluep, Isabelle. Transitioning to Decent Work and Economic Growth. Basel, Switzerland: MPDI Books, 67-101.
Bischof, Sylvain (2021). Dissecting the response to photoperiod at the cell-type level. Plant Cell, 33(4):1083-1084.
Mannweiler, Olga; Pinto-Carbó, Marta; Lardi, Martina; Agnoli, Kirsty; Eberl, Leo (2021). Investigation of Burkholderia cepacia Complex Methylomes via Single-Molecule, Real-Time Sequencing and Mutant Analysis. Journal of Bacteriology, 203(12):00683-20.
Aerni, Philipp. Tierschutz und Ethik: Der Aktivismus ist zunehmend ineffektiv. In: NZZ.ch-Feuilleton, 13 May 2021, 1-10.
Hernandez-Lagana, Elvira; Mosca, Gabriella; Mendocilla-Sato, Ethel; Pires, Nuno; Frey, Anja; Giraldo-Fonseca, Alejandro; Michaud, Caroline; Grossniklaus, Ueli; Hamant, Olivier; Godin, Christophe; Boudaoud, Arezki; Grimanelli, Daniel; Autran, Daphné; Baroux, Célia (2021). Organ geometry channels reproductive cell fate in the Arabidopsis ovule primordium. eLife, 10:e66031.
Amrhein, Nikolaus; Martinoia, Enrico (2021). An ABC transporter of the ABCC subfamily localized at the plasma membrane confers glyphosate resistance. Proceedings of the National Academy of Sciences of the United States of America, 118(18):e2104746118.
Manser, Beatrice; Koller, Teresa; Praz, Coraline Rosalie; Roulin, Anne C; Zbinden, Helen; Arora, Sanu; Steuernagel, Burkhard; Wulff, Brande B H; Keller, Beat; Sánchez‐Martín, Javier (2021). Identification of specificity‐defining amino acids of the wheat immune receptor Pm2 and powdery mildew effector AvrPm2. The Plant Journal, 106(4):993-1007.
Bjornson, Marta; Pimprikar, Priya; Nürnberger, Thorsten; Zipfel, Cyril (2021). The transcriptional landscape of Arabidopsis thaliana pattern-triggered immunity. Nature Plants, 7(5):579-586.
Grubb, Lauren E; Derbyshire, Paul; Dunning, Katherine E; Zipfel, Cyril; Menke, Frank L H; Monaghan, Jacqueline (2021). Large-scale identification of ubiquitination sites on membrane-associated proteins in Arabidopsis thaliana seedlings. Plant Physiology, 185(4):1483-1488.
Fenn, Samuel; Dubern, Jean-Frédéric; Cigana, Cristina; De Simone, Maura; Lazenby, James; Juhas, Mario; Schwager, Stephan; Bianconi, Irene; Döring, Gerd; Elmsley, Jonas; Eberl, Leo; Williams, Paul; Bragonzi, Alessandra; Cámara, Miguel (2021). NirA is an alternative nitrite reductase from Pseudomonas aeruginosa with potential as an antivirulence target. mBio, 12(2):e00207-21.
Holmes, Danalyn R; Bredow, Melissa; Thor, Kathrin; Pascetta, Sydney A; Sementchoukova, Irina; Siegel, Kristen R; Zipfel, Cyril; Monaghan, Jacqueline (2021). A novel allele of the Arabidopsis thaliana MACPF protein CAD1 results in deregulated immune signaling. Genetics, 217(4):iyab022.
Aerni, Philipp (2021). Decentralized Economic Complexity in Switzerland and Its Contribution to Inclusive and Sustainable Change. Sustainability, 13(8):4181.
Yang, Ping; Scheuermann, Daniela; Kessel, Bettina; Koller, Teresa; Greenwood, Julian R; Hurni, Severine; Herren, Gerhard; Zhou, Shenghui; Marande, William; Wicker, Thomas; Krattinger, Simon G; Ouzunova, Milena; Keller, Beat (2021). Alleles of a wall‐associated kinase gene account for three of the major northern corn leaf blight resistance loci in maize. The Plant Journal, 106(2):526-535.
Rabanus-Wallace, M Timothy; Hackauf, Bernd; Mascher, Martin; Lux, Thomas; Wicker, Thomas; Gundlach, Heidrun; Baez, Mariana; Houben, Andreas; et al; Praz, Coraline R; Keller, Beat (2021). Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential. Nature Genetics, 53(4):564-573.
Fernández Castro, Bieito; Sepúlveda Steiner, Oscar; Knapp, Deborah; Posch, Thomas; Bouffard, Damien; Wüest, Alfred (2021). Inhibited vertical mixing and seasonal persistence of a thin cyanobacterial layer in a stratified lake. Aquatic Sciences, 83:38.
Heredia‐Ponce, Zaira; Gutiérrez‐Barranquero, José Antonio; Purtschert‐Montenegro, Gabriela; Eberl, Leo; de Vicente, Antonio; Cazorla, Francisco M (2021). Role of extracellular matrix components in the formation of biofilms and their contribution to the biocontrol activity of Pseudomonas chlororaphis PCL1606. Environmental Microbiology, 23(4):2086-2101.
Bernal, Patricia; Eberl, Leo; de Jonge, Ronnie; Lepek, Viviana C; Malone, Jacob G (2021). Understanding plant–microorganism interactions to envision a future of sustainable agriculture. Environmental Microbiology, 23(4):1809-1811.
Aerni, Philipp (2021). The Ethics of Farm Animal Biotechnology from an Anthropological Perspective. Sustainability, 13:3674.
Shimizu, Kentaro K; Copetti, Dario; Okada, Moeko; Wicker, Thomas; Tameshige, Toshiaki; Hatakeyama, Masaomi; Shimizu-Inatsugi, Rie; Aquino, Catharine; et al (2021). De Novo Genome Assembly of the Japanese Wheat Cultivar Norin 61 Highlights Functional Variation in Flowering Time and Fusarium Resistance Genes in East Asian Genotypes. Plant & Cell Physiology, 62(1):8-27.
Wagg, Cameron; Hautier, Yann; Pellkofer, Sarah; Banerjee, Samiran; Schmid, Bernhard; van der Heijden, Marcel G A (2021). Diversity and asynchrony in soil microbial communities stabilizes ecosystem functioning. eLife, 10:e62813.
Schumacher, Isabel; Ndinyanka Fabrice, Tohnyui; Abdou, Marie-Therese; Kuhn, Benjamin M; Voxeur, Aline; Herger, Aline; Roffler, Stefan; Bigler, Laurent; Wicker, Thomas; Ringli, Christoph (2021). Defects in Cell Wall Differentiation of the Arabidopsis Mutant rol1-2 Is Dependent on Cyclin-Dependent Kinase CDK8. Cells, 10(3):685.
Desiderio, Francesca; Bourras, Salim; Mazzucotelli, Elisabetta; Rubiales, Diego; Keller, Beat; Cattivelli, Luigi; Valè, Giampiero (2021). Characterization of the resistance to powdery mildew and leaf rust carried by the bread wheat cultivar Victo. International Journal of Molecular Sciences, 22(6):3109.
Forster, Dominik; Qu, Zhishuai; Pitsch, Gianna; Bruni, Estelle P; Kammerlander, Barbara; Pröschold, Thomas; Sonntag, Bettina; Posch, Thomas; Stoeck, Thorsten (2021). Lake ecosystem robustness and resilience inferred from a climate-stressed protistan plankton network. Microorganisms, 9(2):549.
Riedo, Judith; Wettstein, Felix E; Rösch, Andrea; Herzog, Chantal; Banerjee, Samiran; Büchi, Lucie; Charles, Raphaël; Wächter, Daniel; Martin-Laurent, Fabrice; Bucheli, Thomas D; Walder, Florian; van der Heijden, Marcel G A (2021). Widespread occurrence of pesticides in organically managed agricultural soils - the ghost of a conventional agricultural past? Environmental Science & Technology, 55(5):2919-2928.
Hewitt, Tim; Müller, Marion C; Molnár, István; Mascher, Martin; Holušová, Kateřina; Šimková, Hana; Kunz, Lukas; Zhang, Jianping; Li, Jianbo; Bhatt, Dhara; Sharma, Raghvendra; Schudel, Seraina; Yu, Guotai; Steuernagel, Burkhard; Periyannan, Sambasivam; Wulff, Brande; Ayliffe, Mick; McIntosh, Robert; Keller, Beat; Lagudah, Evans; Zhang, Peng (2021). A highly differentiated region of wheat chromosome 7AL encodes a Pm1a immune receptor that recognizes its corresponding AvrPm1a effector from Blumeria graminis. New Phytologist, 229(5):2812-2826.
Vandenbussche, Ian; Sass, Andrea; Van Nieuwerburgh, Filip; Pinto-Carbó, Marta; Mannweiler, Olga; Eberl, Leo; Coenye, Tom (2021). Detection of cytosine methylation in Burkholderia cenocepacia by single-molecule real-time sequencing and whole-genome bisulfite sequencing. Microbiology, 167(3):001027.
Ursache, Robertas; De Jesus Vieira Teixeira, Cristovāo; Dénervaud Tendon, Valérie; Gully, Kay; De Bellis, Damien; Schmid-Siegert, Emanuel; Grube Andersen, Tonni; Shekhar, Vinay; Calderon, Sandra; Pradervand, Sylvain; Nawrath, Christiane; Geldner, Niko; Vermeer, Joop E M (2021). GDSL-domain proteins have key roles in suberin polymerization and degradation. Nature Plants, 7(3):353-364.
Bodenhausen, Natacha; Deslandes-Hérold, Gabriel; Waelchli, Jan; Held, Alain; van der Heijden, Marcel G A; Schlaeppi, Klaus (2021). Relative qPCR to quantify colonization of plant roots by arbuscular mycorrhizal fungi. Mycorrhiza, 31(2):137-148.
Sánchez-Martín, Javier; Widrig, Victoria; Herren, Gerhard; Wicker, Thomas; Zbinden, Helen; Gronnier, Julien; Spörri, Laurin; Praz, Coraline R; Heuberger, Matthias; Kolodziej, Markus C; Isaksson, Jonatan; Steuernagel, Burkhard; Karafiátová, Miroslava; Doležel, Jaroslav; Zipfel, Cyril; Keller, Beat (2021). Wheat Pm4 resistance to powdery mildew is controlled by alternative splice variants encoding chimeric proteins. Nature Plants, 7(3):327-341.
Cakir, Benjamin; Aerni, Philipp; Schluep, Isabelle; Cakir, Isa (2021). 'Amalgamation of Export with Import Information: The Economic Complexity Index as a Coherent Driver of Sustainability’. Sustainability, 13(4/2049):1-71.
Garland, Gina; Banerjee, Samiran; Edlinger, Anna; Miranda Oliveira, Emily; Herzog, Chantal; Wittwer, Raphaël; Philippot, Laurent; Maestre, Fernando T; van der Heijden, Marcel G A (2021). A closer look at the functions behind ecosystem multifunctionality: A review. Journal of Ecology, 109(2):600-613.
Qu, Zhishuai; Forster, Dominik; Bruni, Estelle P; Frantal, Daniela; Kammerlander, Barbara; Nachbaur, Laura; Pitsch, Gianna; Posch, Thomas; Pröschold, Thomas; Teubner, Katrin; Sonntag, Bettina; Stoeck, Thorsten (2021). Aquatic food webs in deep temperate lakes: Key species establish through their autecological versatility. Molecular Ecology, 30(4):1053-1071.
Hirte, Juliane; Walder, Florian; Hess, Julia; Büchi, Lucie; Colombi, Tino; van der Heijden, Marcel G; Mayer, Jochen (2021). Enhanced root carbon allocation through organic farming is restricted to topsoils. Science of the Total Environment, 755:143551.
Garland, Gina; Edlinger, Anna; Banerjee, Samiran; Degrune, Florine; García-Palacios, Pablo; Pescador, David Sánchez; Herzog, Chantal; Romdhane, Sana; Saghai, Aurélien; Spor, Ayme; Wagg, Cameron; Hallin, Sara; Maestre, Fernando T; Philippot, Laurent; Rillig, Matthias C; van der Heijden, Marcel G A (2021). Crop cover is more important than rotational diversity for soil multifunctionality and cereal yields in European cropping systems. Nature Food, 2(1):28-37.
Thieme, Michael; Roulin, Anne C (2021). Identification of Active Transposable Elements in Plants: The Mobilome-Seq Approach. In: Cho, Jungnam. Plant Transposable Elements. New York: Springer, 95-102.
Introduction to Epigenetics. Edited by: Paro, Renato; Grossniklaus, Ueli; Santoro, Raffaella; Wutz, Anton (2021). Cham, Schweiz: Springer Verlag.
Läubli, Nino F; Burri, Jan T; Marquard, Julian; Vogler, Hannes; Mosca, Gabriella; Vertti-Quintero, Nadia; Shamsudhin, Naveen; deMello, Andrew; Grossniklaus, Ueli; Ahmed, Daniel; Nelson, Bradley J (2021). 3D mechanical characterization of single cells and small organisms using acoustic manipulation and force microscopy. Nature Communications, 12:2583.
Kocyan, Alexander; Fatsea,, Stavroula; Burri, Christian; Kocyan, Sophia; Joshi, Jasmin (2021). Addendum to the Orchid Flora of the Island of Kythira (Greece). Journal Europäischer Orchideen, 53(1):3-18.
Herger, Aline. Analysis of LRXs signaling complex and extensin domain function in Arabidopsis thaliana. 2021, University of Zurich, Faculty of Science.
Knapp, Deborah; Posch, Thomas (2021). Burgunderblutalge im Zürichsee. Aqua & Gas, 101(4):14-21.
Mujakić, Izabela; Andrei, Adrian-Stefan; Shabarova, Tanja; Fecskeová, Lívia Kolesár; Salcher, Michaela M; Piwosz, Kasia; Ghai, Rohit; Koblížek, Michal (2021). Common Presence of Phototrophic Gemmatimonadota in Temperate Freshwater Lakes. mSystems, 6(2):01241-20.
Poretti, Manuel. Comparative genomics and transcriptomics of Triticeae. 2021, University of Zurich, Faculty of Science.
Durán‐Viseras, Ana; Andrei, Adrian-Stefan; Vera‐Gargallo, Blanca; Ghai, Rohit; Sánchez‐Porro, Cristina; Ventosa, Antonio (2021). Culturomics-based genomics sheds light on the ecology of the new haloarchaeal genus Halosegnis. Environmental Microbiology, 23(7):3418-3434.
Stritt, Christoph; Roulin, Anne C (2021). Detecting Signatures of TE Polymorphisms in Short-Read Sequencing Data. In: Cho, Jungnam. Plant transposable elements. New York: Springer, 177-187.
Nenadić, Milica; Vermeer, Joop E M (2021). Dynamic cytokinin signalling landscapes during lateral root formation in Arabidopsis. Quantitative Plant Biology, 2(21):e13.
Müller, Marion Claudia. Genomic and genetic analysis of host and cultivar adaption in the cereal powdery mildew pathosystem. 2021, University of Zurich, Faculty of Science.
Bulzu, Paul-Adrian; Kavagutti, Vinicius Silva; Chiriac, Maria-Cecilia; Vavourakis, Charlotte D; Inoue, Keiichi; Kandori, Hideki; Andrei, Adrian-Stefan; Ghai, Rohit (2021). Heliorhodopsin Evolution Is Driven by Photosensory Promiscuity in Monoderms. mSphere, 6(6):e00661-21.
Gualdi, Stefano. Identification of fitness determinants in Burkholderia cenocepacia H111 by transposon sequencing. 2021, University of Zurich, Faculty of Science.
Bellés-Sancho, Paula; Lardi, Martina; Liu, Yilei; Hug, Sebastian; Pinto-Carbó, Marta Adriana; Zamboni, Nicola; Pessi, Gabriella (2021). Paraburkholderia phymatum Homocitrate Synthase NifV Plays a Key Role for Nitrogenase Activity during Symbiosis with Papilionoids and in Free-Living Growth Conditions. Cells, 10(4):952.
Shuka, Donald; Anxhela, Rredhi; Besimi, Gurra; Bachofen, Reinhard (2021). Photosynthetic activity of the lichen Xanthoria elegans in relation to the daily course of temperature and humidity, a field study in the Piora valley, Ticino, Switzerland. In: Pedruzzi, Raffaele; Bianconi, Filippo. Scienze alpine, la centralità di piora e del san gottardo. Bellinzona: Edizioni Centro Biologia Alpina di Piora, 73-84.
Cadot, Selma Florence. Plant root exudates shape the rizosphere microbiome and mediate context-specific plant-soil feedback. 2021, University of Zurich, Faculty of Science.
Baricz, Andreea; Chiriac, Cecilia Maria; Andrei, Adrian-Stefan; Bulzu, Paul‐Adrian; Levei, Erika Andrea; Cadar, Oana; Battes, Karina Paula; Cîmpean, Mirela; Șenilă, Marin; Cristea, Adorján; Muntean, Vasile; Alexe, Mircea; Coman, Cristian; Szekeres, Edina Kriszta; Sicora, Cosmin Ionel; Ionescu, Artur; Blain, David; O'Neill, William Kenneth; Edwards, Jessica; Hallsworth, John Edward; Banciu, Horia Leonard (2021). Spatio-temporal insights into microbiology of the freshwater-to-hypersaline, oxic-hypoxic-euxinic waters of Ursu Lake. Environmental Microbiology, 23(7):3523-3540.
Alameti, Era; Cani, Megi; Nezaj, Melitjan; Selgjekaj, Ledi; Schneller, Jakob; Bachofen, Reinhard (2021). The diversity of ferns and lycopods in Val Piora and measurements of ecological and physiological indicators on two widely distributed fern species at two different sites. In: Pedruzzi, Raffaele; Bianconi, Filippo. Scienze alpine, la centralità di piora e del san gottardo. Bellinzona: Edizioni Centro Biologia Alpina di Piora, 53-72.
Edlinger, Anna Theresa. The impact of agricultural management on European soil ecosystems. 2021, University of Zurich, Faculty of Science.
Kolodziej, Markus C. The use of a high-quality genome from the Swiss winter wheat line ArinaLrFor: genomic structure and isolation of leaf rust resistance genes. 2021, University of Zurich, Faculty of Science.
Bräunlich, Stephanie. Wheat disease resistance gene Lr34 and the role of abscisic acid. 2021, University of Zurich, Faculty of Science.
Saikia, Eashan; Läubli, Nino F; Burri, Jan T; Rüggeberg, Markus; Schlepütz, Christian M; Vogler, Hannes; Burgert, Ingo; Herrmann, Hans J; Nelson, Bradley J; Grossniklaus, Ueli; Wittel, Falk K (2020). Kinematics governing mechanotransduction in the sensory hair of the Venus flytrap. International Journal of Molecular Sciences, 22:280.
Walkowiak, Sean; Gao, Liangliang; Monat, Cecile; et al; Kolodziej, Markus C; Copetti, Dario; Krattinger, Simon G; Keller, Beat; Wicker, Thomas; Halstead-Nussloch, Gwyneth; Paape, Timothy; Shimizu-Inatsugi, Rie; Shimizu, Kentaro K (2020). Multiple wheat genomes reveal global variation in modern breeding. Nature, 588(7837):277-283.
Steinbrenner, Adam D; Muñoz-Amatriaín, Maria; Chaparro, Antonio F; Aguilar-Venegas, Jessica Montserrat; Lo, Sassoum; Okuda, Satohiro; Glauser, Gaetan; Dongiovanni, Julien; Shi, Da; Hall, Marlo; Crubaugh, Daniel; Holton, Nicholas; Zipfel, Cyril; Abagyan, Ruben; Turlings, Ted C J; Close, Timothy J; Huffaker, Alisa; Schmelz, Eric A (2020). A receptor-like protein mediates plant immune responses to herbivore-associated molecular patterns. Proceedings of the National Academy of Sciences of the United States of America, 117(49):31510-31518.
Straub, Hervé; Eberl, Leo; Zinn, Manfred; Rossi, René M; Maniura-Weber, Katharina; Ren, Qun (2020). A microfluidic platform for in situ investigation of biofilm formation and its treatment under controlled conditions. Journal of Nanobiotechnology, 18:166.
Desnoyer, Nicholas; Howard, Gregory; Jong, Emma; Palanivelu, Ravishankar (2020). AtPIG-S, a predicted Glycosylphosphatidylinositol Transamidase subunit, is critical for pollen tube growth in Arabidopsis. BMC Plant Biology, 20:380.
Heredia-Ponce, Zaira; Gutiérrez-Barranquero, Jose Antonio; Purtschert-Montenegro, Gabriela; Eberl, Leo; Cazorla, Francisco M; de Vicente, Antonio (2020). Biological role of EPS from Pseudomonas syringae pv. syringae UMAF0158 extracellular matrix, focusing on a Psl-like polysaccharide. npj Biofilms and Microbiomes, 6:875.
Silva, Marisa O D; Pernthaler, Jakob (2020). Biomass addition alters community assembly in ultrafiltration membrane biofilms. Scientific Reports, 10:11552.
Desnoyer, Nicholas; Palanivelu, Ravishankar (2020). Bridging the GAPs in plant reproduction: a comparison of plant and animal GPI-anchored proteins. Plant Reproduction, 33(3-4):129-142.
Kartal, Önder; Schmid, Marc W; Grossniklaus, Ueli (2020). Cell type-specific genome scans of DNA methylation divergence indicate an important role for transposable elements. Genome Biology, 21:172.
Sailer, Christian; Stöcklin, Jürg; Grossniklaus, Ueli (2020). Dynamics of apomictic and sexual reproduction during primary succession on a glacier forefield in the Swiss Alps. Scientific Reports, 10:8269.
Abrouk, Michael; Ahmed, Hanin Ibrahim; Cubry, Philippe; Šimoníková, Denisa; Cauet, Stéphane; Pailles, Yveline; Bettgenhaeuser, Jan; Gapa, Liubov; Scarcelli, Nora; Couderc, Marie; Zekraoui, Leila; Kathiresan, Nagarajan; Čížková, Jana; Hřibová, Eva; Doležel, Jaroslav; Arribat, Sandrine; Bergès, Hélène; Wieringa, Jan J; Gueye, Mathieu; Kane, Ndjido A; Leclerc, Christian; Causse, Sandrine; Vancoppenolle, Sylvie; Billot, Claire; Wicker, Thomas; Vigouroux, Yves; Barnaud, Adeline; Krattinger, Simon G (2020). Fonio millet genome unlocks African orphan crop diversity for agriculture in a changing climate. Nature Communications, 11(1):4488.
Kato, Hiroaki; Onai, Kiyoshi; Abe, Akira; Shimizu, Motoki; Takagi, Hiroki; Tateda, Chika; Utsushi, Hiroe; Singkarabanit-Ogawa, Suthitar; Kitakura, Saeko; Ono, Erika; Zipfel, Cyril; Takano, Yoshitaka; Ishiura, Masahiro; Terauchi, Ryohei (2020). Lumi-Map, a real-time luciferase bioluminescence screen of mutants combined with MutMap, reveals Arabidopsis genes involved in PAMP-triggered immunity. Molecular Plant-Microbe Interactions, 33(12):1366-1380.
Tan, Shutang; Di Donato, Martin; Glanc, Matouš; Zhang, Xixi; Klíma, Petr; Liu, Jie; Bailly, Aurélien; Ferro, Noel; Petrášek, Jan; Geisler, Markus; Friml, Jiří (2020). Non-steroidal anti-inflammatory drugs target TWISTED DWARF1-regulated actin dynamics and auxin transport-mediated plant development. Cell Reports, 33(9):108463.
Hood, Stephanie E; Kofler, Xeniya V; Chen, Quiyu; Scott, Judah; Ortega, Jason; Lehmann, Michael (2020). Nuclear translocation ability of Lipin differentially affects gene expression and survival in fed and fasting Drosophila. Journal of Lipid Research, 61(12):1720-1732.
Thomas, Christoph; Aller, Stephen G; Beis, Konstantinos; Carpenter, Elisabeth P; et al; Martinoia, Enrico (2020). Structural and functional diversity calls for a new classification of ABC transporters. FEBS letters, 594(23):3767-3775.
Liu, Qikun; Bischof, Sylvain; Harris, C Jake; Zhong, Zhenhui; Zhan, Lingyu; Nguyen, Calvin; Rashoff, Andrew; Barshop, William D; Sun, Fei; Feng, Suhua; Potok, Magdalena; Gallego-Bartolome, Javier; Zhai, Jixian; Wohlschlegel, James A; Carey, Michael F; Long, Jeffrey A; Jacobsen, Steven E (2020). The characterization of Mediator 12 and 13 as conditional positive gene regulators in Arabidopsis. Nature Communications, 11:2798.
Secchi, Eleonora; Vitale, Alessandra; Miño, Gastón L; Kantsler, Vasily; Eberl, Leo; Rusconi, Roberto; Stocker, Roman (2020). The effect of flow on swimming bacteria controls the initial colonization of curved surfaces. Nature Communications, 11:2851.
Wyler, Michele; Stritt, Christoph; Walser, Jean-Claude; Baroux, Célia; Roulin, Anne C (2020). Impact of transposable elements on methylation and gene expression across natural accessions of Brachypodium distachyon. Genome Biology and Evolution, 12(11):1994-2001.
Tamburini, Giovanni; Bommarco, Riccardo; Wanger, Thomas Cherico; Kremen, Claire; van der Heijden, Marcel G A; Liebman, Matt; Hallin, Sara (2020). Agricultural diversification promotes multiple ecosystem services without compromising yield. Science Advances, 6(45):eaba1715.
Picart-Picolo, Ariadna; Grob, Stefan; Picault, Nathalie; Franek, Michal; Llauro, Christel; Halter, Thierry; Maier, Tom R; Jobet, Edouard; Descombin, Julie; Zhang, Panpan; Paramasivan, Vijayapalani; Baum, Thomas J; Navarro, Lionel; Dvořáčková, Martina; Mirouze, Marie; Pontvianne, Frédéric (2020). Large tandem duplications affect gene expression, 3D organization, and plant–pathogen response. Genome Research, 30(11):1583-1592.
Le Moigne, Alizée; Bartosiewicz, Maciej; Schaepman‐Strub, Gabriela; Abiven, Samuel; Pernthaler, Jakob (2020). The biogeochemical variability of Arctic thermokarst ponds is reflected by stochastic and niche‐driven microbial community assembly processes. Environmental Microbiology, 22(11):4847-4862.
Bjornson, Marta; Kajala, Kaisa; Zipfel, Cyril; Ding, Pingtao (2020). Low-cost and high-throughput RNA-seq library preparation for illumina sequencing from plant tissue. Bio-protocol, 10(20):e3799.
Šimek, Karel; Grujčić, Vesna; Mukherjee, Indranil; Kasalický, Vojtěch; Nedoma, Jiří; Posch, Thomas; Mehrshad, Maliheh; Salcher, Michaela M (2020). Cascading effects in freshwater microbial food webs by predatory Cercozoa, Katablepharidacea and ciliates feeding on aplastidic bacterivorous cryptophytes. FEMS Microbiology Ecology, 96(10):fiaa121.
Stöckle, Dorothee; Vermeer, Joop E M (2020). Plant biology: journey to the center of the Casparian Strip. Current Biology, 30(20):R1273-R1275.
Thor, Kathrin; Jiang, Shushu; Michard, Erwan; George, Jeoffrey; Scherzer, Sönke; Huang, Shouguang; Dindas, Julian; Derbyshire, Paul; Leitão, Nuno; DeFalco, Thomas A; Köster, Philipp; Hunter, Kerri; Kimura, Sachie; Gronnier, Julien; Stransfeld, Lena; Kadota, Yasuhiro; Bücherl, Christoph A; Charpentier, Myriam; Wrzaczek, Michael; MacLean, Daniel; Oldroyd, Giles E D; Menke, Frank L H; Roelfsema, M Rob G; Hedrich, Rainer; Feijó, José; Zipfel, Cyril (2020). The calcium-permeable channel OSCA1.3 regulates plant stomatal immunity. Nature, 585(7826):569-573.
Wittwer, Raphaël. Assessing and Improving the Multifunctionality of Swiss Arable Cropping Systems. 2020, University of Zurich, Faculty of Science.
Skalska, Aleksandra; Stritt, Christoph; Wyler, Michele; Williams, Hefin W; Vickers, Martin; Han, Jiwan; Tuna, Metin; Savas Tuna, Gulsemin; Susek, Karolina; Swain, Martin; Wóycicki, Rafał K; Chaudhary, Saurabh; Corke, Fiona; Doonan, John H; Roulin, Anne C; Hasterok, Robert; Mur, Luis A J (2020). Genetic and methylome variation in Turkish Brachypodium distachyon accessions differentiate two geographically distinct subpopulations. International Journal of Molecular Sciences, 21(18):6700.
Vitale, Alessandra; Paszti, Sarah; Takahashi, Kohei; Toyofuku, Masanori; Pessi, Gabriella; Eberl, Leo (2020). Mapping of the denitrification pathway in Burkholderia thailandensis by genome-wide mutant profiling. Journal of Bacteriology, 202(23):00304-20.
Hao, Pengchao; Xia, Jian; Liu, Jie; Di Donato, Martin; Pakula, Konrad; Bailly, Aurélien; Jasinski, Michal; Geisler, Markus (2020). Auxin-transporting ABC transporters are defined by a conserved D/E-P motif regulated by a prolylisomerase. Journal of Biological Chemistry, 295(37):13094-13105.
Stritt, Christoph; Wyler, Michele; Gimmi, Elena L; Pippel, Martin; Roulin, Anne C (2020). Diversity, dynamics and effects of long terminal repeat retrotransposons in the model grass Brachypodium distachyon. New Phytologist, 227(6):1736-1748.
Gimeno, A; Kägi, A; Drakopoulos, D; Bänziger, I; Lehmann, E; Forrer, H‐R; Keller, Beat; Vogelgsang, S (2020). From laboratory to the field: biological control of Fusarium graminearum on infected maize crop residues. Journal of applied microbiology, 129(3):680-694.
Lindner, Stefan; Keller, Bettina; Singh, Simrat P; Hasenkamp, Zsuzsanna; Jung, Esther; Müller, Marion C; Bourras, Salim; Keller, Beat (2020). Single residues in the LRR domain of the wheat PM3A immune receptor can control the strength and the spectrum of the immune response. The Plant Journal, 104(1):200-214.
Carbonnel, Samy; Das, Debatosh; Varshney, Kartikye; Kolodziej, Markus C; Villaécija-Aguilar, José A; Gutjahr, Caroline (2020). The karrikin signaling regulator SMAX1 controlsLotus japonicusroot and root hair development by suppressing ethylene biosynthesis. Proceedings of the National Academy of Sciences of the United States of America, 117(35):21757-21765.
Vandenbussche, Ian; Sass, Andrea; Pinto-Carbó, Marta; Mannweiler, Olga; Eberl, Leo; Coenye, Tom (2020). DNA methylation epigenetically regulates gene expression in Burkholderia cenocepacia and controls biofilm formation, cell aggregation, and motility. mSphere, 5(4):00455-20.
Rezzoagli, Chiara; Archetti, Martina; Mignot, Ingrid; Baumgartner, Michael; Kümmerli, Rolf (2020). Combining antibiotics with antivirulence compounds can have synergistic effects and reverse selection for antibiotic resistance in Pseudomonas aeruginosa. PLoS Biology, 18(8):e3000805.
Gu, Shaohua; Wei, Zhong; Shao, Zhengying; Friman, Ville-Petri; Cao, Kehao; Yang, Tianjie; Kramer, Jos; Wang, Xiaofang; Li, Mei; Mei, Xinlan; Xu, Yangchun; Shen, Qirong; Kümmerli, Rolf; Jousset, Alexandre (2020). Competition for iron drives phytopathogen control by natural rhizosphere microbiomes. Nature Microbiology, 5(8):1002-1010.
Jullien, Pauline E; Grob, Stefan; Marchais, Antonin; Pumplin, Nathan; Chevalier, Clement; Bonnet, Diane M V; Otto, Caroline; Schott, Gregory; Voinnet, Olivier (2020). Functional characterization of Arabidopsis ARGONAUTE 3 in reproductive tissues. The Plant Journal, 103(5):1796-1809.
Bischof, Sylvain (2020). Which Factors Control Starch Granule Initiation? Plant Cell, 32(8):2449-2450.
Vitale, Alessandra; Pessi, Gabriella; Urfer, Matthias; Locher, Hans H; Zerbe, Katja; Obrecht, Daniel; Robinson, John A; Eberl, Leo (2020). Identification of genes required for resistance to peptidomimetic antibiotics by transposon sequencing. Frontiers in Microbiology, 11:1681.
Habjanič, Jelena; Mathew, Anugraha; Eberl, Leo; Freisinger, Eva (2020). Deciphering the Enigmatic Function of Pseudomonas Metallothioneins. Frontiers in Microbiology, 11:1709.
Liu, Yilei; Bellich, Barbara; Hug, Sebastian; Eberl, Leo; Cescutti, Paola; Pessi, Gabriella (2020). The exopolysaccharide Cepacian plays a role in the establishment of the Paraburkholderia phymatum – Phaseolus vulgaris symbiosis. Frontiers in Microbiology, 11:1600.
Arribas-Hernández, Laura; Simonini, Sara; Hansen, Mathias Henning; Paredes, Esther Botterweg; Bressendorff, Simon; Dong, Yang; Østergaard, Lars; Brodersen, Peter (2020). Recurrent requirement for the m6A-ECT2/ECT3/ECT4 axis in the control of cell proliferation during plant organogenesis. Development, 147:dev189134.
Zupunski, Andrea. Role of Protein N-glycosylation during the Pollen Tube Reception in Arabidopsis thaliana. 2020, University of Zurich, Faculty of Science.
Burri, Jan T; Saikia, Eashan; Läubli, Nino F; Vogler, Hannes; Wittel, Falk K; Rüggeberg, Markus; Herrmann, Hans J; Burgert, Ingo; Nelson, Bradley J; Grossniklaus, Ueli (2020). A single touch can provide sufficient mechanical stimulation to trigger Venus flytrap closure. PLoS Biology, 18(7):e3000740.
Sathe, Santosh; Kümmerli, Rolf (2020). Antagonistic interactions subdue inter‐species green‐beard cooperation in bacteria. Journal of Evolutionary Biology, 33:1245-1255.
Santos Fernandez, Gorka. The Acid Growth Theory: a Fundamental Concept Revisited. 2020, University of Zurich, Faculty of Science.
Tsutsui, Hiroki; Yanagisawa, Naoki; Kawakatsu, Yaichi; Ikematsu, Shuka; Sawai, Yu; Tabata, Ryo; Arata, Hideyuki; Higashiyama, Tetsuya; Notaguchi, Michitaka (2020). Micrografting device for testing systemic signaling in Arabidopsis. The Plant Journal, 103(2):918-929.
Monte, Isabel (2020). Plant Evolution: Divergent Plants, Divergent Functions for C1HDZ Orthologs. Current Biology, 30(14):R817-R819.
Bischof, Sylvain (2020). Remodeling Chromatin in an ARID environment. Plant Cell, 32(7):2063-2064.
Sasse, Joelle; Kosina, Suzanne M; de Raad, Markus; Jordan, Jacob S; Whiting, Katherine; Zhalnina, Kateryna; Northen, Trent R (2020). Root morphology and exudate availability are shaped by particle size and chemistry in Brachypodium distachyon. Plant Direct, 4(7):e00207.
Oeyen, Jan Philip; Baa-Puyoulet, Patrice; Benoit, Joshua B; Beukeboom, Leo W; Bornberg-Bauer, Erich; Buttstedt, Anja; Calevro, Federica; Cash, Elizabeth I; Chao, Hsu; Charles, Hubert; et al; Sotiropoulos, Alexandros G; Niehuis, Oliver (2020). Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera. Genome Biology and Evolution, 12(7):1099-1188.
Pontvianne, Frédéric; Grob, Stefan (2020). Three-dimensional nuclear organization in Arabidopsis thaliana. Journal of Plant Research, 133(4):479-488.
Herger, Aline; Gupta, Shibu; Kadler, Gabor; Franck, Christina Maria; Boisson-Dernier, Aurélien; Ringli, Christoph (2020). Overlapping functions and protein-protein interactions of LRR-extensins in Arabidopsis. PLoS Genetics, 16(6):e1008847.
Sieber, Simon; Daeppen, Christophe; Jenul, Christian; Mannancherril, Vidya; Eberl, Leo; Gademann, Karl (2020). Biosynthesis and Structure Activity Relationship Investigations of the Diazeniumdiolate Antifungal Agent Fragin. Chembiochem, 21(11):1587-1592.
Tsuchimatsu, Takashi; Kakui, Hiroyuki; Yamazaki, Misako; Marona, Cindy; Tsutsui, Hiroki; Hedhly, Afif; Meng, Dazhe; Sato, Yutaka; Städler, Thomas; Grossniklaus, Ueli; Kanaoka, Masahiro M; Lenhard, Michael; Nordborg, Magnus; Shimizu, Kentaro K (2020). Adaptive Reduction of Male Gamete Number in the Selfing Plant Arabidopsis Thaliana. Nature Communications, 11:2885.
Steuernagel, Burkhard; Witek, Kamil; Krattinger, Simon G; Ramirez-Gonzalez, Ricardo H; Schoonbeek, Henk-jan; Yu, Guotai; Baggs, Erin; Witek, Agnieszka I; Yadav, Inderjit; Krasileva, Ksenia V; Jones, Jonathan D G; Uauy, Cristobal; Keller, Beat; Ridout, Christopher J; Wulff, Brande B H (2020). The NLR-annotator tool enables annotation of the intracellular immune receptor repertoire. Plant Physiology, 183(2):468-482.
Gimeno, Alejandro. New Tools to Advance the Biological Control of Fusarium graminearum by the Antagonist Clonostachys rosea. 2020, University of Zurich, Faculty of Science.
Pröschold, Thomas; Pitsch, Gianna; Darienko, Tatyana (2020). Micractinium tetrahymenae (Trebouxiophyceae, Chlorophyta), a new endosymbiont isolated from ciliates. Diversity, 12:200.
Thellmann, Martha; Andersen, Tonni Grube; Vermeer, Joop E M (2020). Translating ribosome affinity purification (trap) to investigate Arabidopsis thaliana root development at a cell type-specific scale. Journal of Visualized Experiments, 159:e60919.
Heiniger, Benjamin. The genetic architecture of cadmium and mercury accumulation and tolerance in the model legume Medicago truncatula. 2020, University of Zurich, Faculty of Science.
Hedhly, Afif; Nestorova, Anna; Herrmann, Anja; Grossniklaus, Ueli (2020). Acute heat stress during stamen development affects both the germline and sporophytic lineages in Arabidopsis thaliana (L.) Heynh. Environmental and Experimental Botany, 173:103992.
De Vrieze, Mout; Varadarajan, Adithi R; Schneeberger, Kerstin; Bailly, Aurélien; Rohr, Rudolf P; Ahrens, Christian H; Weisskopf, Laure (2020). Linking comparative genomics of nine potato-associated Pseudomonas isolates with their differing biocontrol potential against late blight. Frontiers in Microbiology, 11:857.
Cheval, Cécilia; Samwald, Sebastian; Johnston, Matthew G; de Keijzer, Jeroen; Breakspear, Andrew; Liu, Xiaokun; Bellandi, Annalisa; Kadota, Yasuhiro; Zipfel, Cyril; Faulkner, Christine (2020). Chitin perception in plasmodesmata characterizes submembrane immune-signaling specificity in plants. Proceedings of the National Academy of Sciences of the United States of America, 117(17):9621-9629.
Rexha, Kaltrina; Bego, Kristi; Zyruku, Dea; Shuka, Lulezim; Husi, René; Schneller, Jakob; Bachofen, Reinhard (2020). Alpine ecology, plant biodiversity and photosynthetic performance of marker plants in a nitrogen gradient induced by Alnus bushes. BMC Ecology, 20:165.
Lindner, Stefan. Insights into the Molecular Mechanisms that Underlie AVR Recognition and Immune Response of the Wheat NLR-Type Receptor PM3A. 2020, University of Zurich, Faculty of Science.
Zhou, Yeling; Vroegop-Vos, Irene A; Van Dijken, Anja J H; Van der Does, Dieuwertje; Zipfel, Cyril; Pieterse, Corné M J; Van Wees, Saskia C M (2020). Carbonic anhydrases CA1 and CA4 function in atmospheric CO2-modulated disease resistance. Planta, 251:75.
Long, Yuchen; Cheddadi, Ibrahim; Mosca, Gabriella; Mirabet, Vincent; Dumond, Mathilde; Kiss, Annamaria; Traas, Jan; Godin, Christophe; Boudaoud, Arezki (2020). Cellular heterogeneity in pressure and growth emerges from tissue topology and geometry. Current Biology, 30(8):1504-1516.e8.
Bischof, Sylvain (2020). Chimeric Activators and Repressors Define HY5 Activity. Plant Cell, 32(4):793-794.
Higgins, Steven; Gualdi, Stefano; Pinto‐Carbó, Marta; Eberl, Leo (2020). Copper resistance genes of Burkholderia cenocepacia H111 identified by transposon sequencing. Environmental Microbiology Reports, 12(2):241-249.
Wittwer, Raphaël A; van der Heijden, Marcel G A (2020). Cover crops as a tool to reduce reliance on intensive tillage and nitrogen fertilization in conventional arable cropping systems. Field Crops Research, 249:107736.
Liu, Guowei; Martinoia, Enrico (2020). How to survive on low potassium. Nature Plants, 6(4):332-333.
Cheung, Alice Y; Qu, Li-Jia; Russinova, Eugenia; Zhao, Yunde; Zipfel, Cyril (2020). Update on Receptors and Signaling. Plant Physiology, 182(4):1527-1530.
Moussu, Steven; Broyart, Caroline; Santos-Fernandez, Gorka; Augustin, Sebastian; Wehrle, Sarah; Grossniklaus, Ueli; Santiago, Julia (2020). Structural basis for recognition of RALF peptides by LRX proteins during pollen tube growth. Proceedings of the National Academy of Sciences of the United States of America, 117(13):7494-7503.
Grob, Stefan (2020). Three-dimensional chromosome organization in flowering plants. Briefings in Functional Genomics, 19(2):83-91.
Schaefer, Luisa Katharina; Parlange, Francis; Buchmann, Gabriele; Jung, Esther; Wehrli, Andreas; Herren, Gerhard; Müller, Marion Claudia; Stehlin, Jonas; Schmid, Roman; Wicker, Thomas; Keller, Beat; Bourras, Salim (2020). Cross-kingdom RNAi of pathogen effectors leads to quantitative adult plant resistance in wheat. Frontiers in Plant Science, 11:253.
Piwosz, Kasia; Shabarova, Tanja; Pernthaler, Jakob; Posch, Thomas; Šimek, Karel; Porcal, Petr; Salcher, Michaela M (2020). Bacterial and eukaryotic small-subunit amplicon data do not provide a quantitative picture of microbial communities, but they are reliable in the context of ecological interpretations. mSphere, 5(2):00052-20.
Diop, Seydina I; Subotic, Oliver; Giraldo‐Fonseca, Alejandro; Waller, Manuel; Kirbis, Alexander; Neubauer, Anna; Potente, Giacomo; Murray‐Watson, Rachel; Boskovic, Filip; Bont, Zoe; Hock, Zsofia; Payton, Adam C; Duijsings, Daniël; Pirovano, Walter; Conti, Elena; Grossniklaus, Ueli; McDaniel, Stuart F; Szövényi, Péter (2020). A pseudomolecule‐scale genome assembly of the liverwort Marchantia polymorpha. The Plant Journal, 101(6):1378-1396.
Wyder, Stefan; Rivera, Alejandro; Valdés, Ana E; Cañal, María Jesús; Gagliardini, Valeria; Fernández, Helena; Grossniklaus, Ueli (2020). Differential gene expression profiling of one- and two-dimensional apogamous gametophytes of the fern Dryopteris affinis ssp. affinis. Plant Physiology and Biochemistry, 148:302-311.
Poretti, Manuel; Praz, Coraline Rosalie; Meile, Lukas; Kälin, Carol; Schaefer, Luisa Katharina; Schläfli, Michael; Widrig, Victoria; Sanchez-Vallet, Andrea; Wicker, Thomas; Bourras, Salim (2020). Domestication of high-copy transposons underlays the wheat small RNA response to an obligate pathogen. Molecular Biology and Evolution, 37(3):839-848.
Schäfer, Luisa. Host-Induced Gene Silencing in Blumeria graminis f.sp. tritici. 2020, University of Zurich, Faculty of Science.
Tabrett, Alexandra; Horton, Matthew W (2020). The influence of host genetics on the microbiome. F1000Research, 9:84.
Aubry, Sylvain; Fankhauser, Niklaus; Ovinnikov, Serguei; Pružinská, Adriana; Stirnemann, Marina; Zienkiewicz, Krzysztof; Herrfurth, Cornelia; Feussner, Ivo; Hörtensteiner, Stefan (2020). Pheophorbide a may regulate Jasmonate signaling during dark-induced senescence. Plant Physiology, 182(2):776-791.
Caro, María del Pilar; Holton, Nicholas; Conti, Gabriela; Venturuzzi, Andrea Laura; Martínez‐Zamora, Martin Gustavo; Zipfel, Cyril; Asurmendi, Sebastian; Díaz‐Ricci, Juan Carlos (2020). The fungal subtilase AsES elicits a PTI‐like defence response in Arabidopsis thaliana plants independently of its enzymatic activity. Molecular Plant Pathology, 21(2):147-159.
Natonik-Białoń, Sandra; Borowska-Wykręt, Dorota; Mosca, Gabriella; Grelowski, Michał; Wrzalik, Roman; Smith, Richard S; Kwiatkowska, Dorota (2020). Deformation of a cell monolayer due to osmotic treatment: a case study of onion scale epidermis. Botany, 98(1):21-36.
Bailly, Aurélien (2020). How plants might recognize rhizospheric bacterial volatiles. In: Ryu, Choong-Min; Weisskopf, Laure; Piechulla, Birgit. Bacterial volatile compounds as mediators of airborne interactions. Singapore: Springer, 139-165.
Florez-Rueda, Ana Marcela; Waser, Lucas; Grossniklaus, Ueli (2020). Laser-assisted microdissection of plant embryos for transcriptional profiling. In: Bayer, Martin. Plant Embryogenesis : Methods and Protocols. Humana Press, New York: Springer, 127-139.
Kramer, Jos; López Carrasco, Miguel Ángel; Kümmerli, Rolf (2020). Positive linkage between bacterial social traits reveals that homogeneous rather than specialised behavioral repertoires prevail in natural Pseudomonas communities. FEMS Microbiology Ecology, 96(1):fiz185.
Burri, Jan T; Munglani, Gautam; Nelson, Bradley J; Grossniklaus, Ueli; Vogler, Hannes (2020). Quantification of mechanical forces and physiological processes involved in pollen tube growth using microfluidics and microrobotics. In: Geitmann, Anja. Pollen and Pollen Tube Biology : Methods and Protocols. Humana, New York: Springer, 275-292.
Vogler, Hannes; Burri, Jan T; Nelson, Bradley J; Grossniklaus, Ueli (2020). Simultaneous measurement of turgor pressure and cell wall elasticity in growing pollen tubes. In: Anderson, Charles T; Haswell, Elizabeth S; Dixit, Ram. Plant cell biology. New York: Elsevier, 297-310.
Zhang, Junling; van der Heijden, Marcel G A; Zhang, Fusuo; Bender, S Franz (2020). Soil biodiversity and crop diversification are vital components of healthy soils and agricultural sustainability. Frontiers of Agricultural Science and Engineering, 7(3):236.
Hu, Xueyun; Jia, Ting; Hörtensteiner, Stefan; Tanaka, Ayumi; Tanaka, Ryouichi (2020). Subcellular localization of chlorophyllase2 reveals it is not involved in chlorophyll degradation during senescence in Arabidopsis thaliana. Plant Science, 290:110314.
Demurtas, Olivia Costantina; de Brito Francisco, Rita; Martinoia, Enrico; Giuliano, Giovanni (2020). Transportomics for the characterization of plant apocarotenoid transmembrane transporters. In: Rodríguez-Concepción, Manuel; Welsch, Ralf. Plant and Food Carotenoids. Clifton, USA: Springer, 89-99.
Mukherjee, Indranil; Salcher, Michaela M; Andrei, Adrian-Stefan; Kavagutti, Vinicius Silva; Shabarova, Tanja; Grujčić, Vesna; Haber, Markus; Layoun, Paul; Hodoki, Yoshikuni; Nakano, Shin-ichi; Šimek, Karel; Ghai, Rohit (2020). A freshwater radiation of diplonemids. ArXiv.org 15209, Cornell University.
Andrei, Adrian-Stefan; Bulzu, Paul‐Adrian; Banciu, Horia Leonard (2020). Blossoms of Rot: Microbial Life in Saline Organic-Rich Sediments. In: Seckbach, Josef; Stan-Lotter, Helga. Extremophiles as Astrobiological Models. Scrivener Publishing LLC: Wiley-Blackwell Publishing, Inc., 45-82.
Mecchia, Martin A; Rövekamp, Moritz; Giraldo-Fonseca, Alejandro; Meier, Dario; Gadient, Philippe; Bowman, John L; Grossniklaus, Ueli (2020). Characterization of the single FERONIA homolog in Marchantia polymorpha reveals an ancestral role of CrRLK1L receptor kinases in regulating cell expansion and morphological integrity. bioRxiv 424085, Cold Spring Harbor Laboratory.
Deplazes-Zemp, Anna; Grossniklaus, Ueli; Lefort, François; Müller, Pie; Romeis, Jörg; Rüegsegger, Adrian; Schoenenberger, Nicola; Spehn, Eva (2020). Gene drives: benefits, risks, and possible applications. Swiss Academies Factsheet, 15(4):1-7.
Catena, Raúl; Özcan, Alaz; Kütt, Laura; Plüss, Alex; Schraml, Peter; Moch, Holger; Bodenmiller, Bernd (2020). Highly multiplexed molecular and cellular mapping of breast cancer tissue in three dimensions using mass tomography. bioRxiv 113571, Cold Spring Harbor Laboratory.
Teano, Gianluca; Concia, Lorenzo; Carron, Léopold; Wolff, Léa; Adamusová, Kateřina; Fojtová, Miloslava; Bourge, Michael; Kramdi, Amira; Colot, Vincent; Grossniklaus, Ueli; Bowler, Chris; Baroux, Célia; Carbone, Alessandra; Probst, Aline V; Procházková Schrumpfová, Petra; Fajkus, Jiří; Amiard, Simon; Grob, Stefan; Bourbousse, Clara; Barneche, Fredy (2020). Histone H1 protects telomeric repeats from H3K27me3 invasion in Arabidopsis. bioRxiv 402172, Cold Spring Harbor Laboratory.
Hernandez-Lagana, Elvira; Mosca, Gabriella; Sato, Ethel Mendocilla; Pires, Nuno; Frey, Anja; Giraldo-Fonseca, Alejandro; Grossniklaus, Ueli; Hamant, Olivier; Godin, Christophe; Boudaoud, Arezki; Grimanelli, Daniel; Autran, Daphné; Baroux, Célia (2020). Organ geometry channels cell fate in the Arabidopsis ovule primordium. bioRxiv 226670, Cold Spring Harbor Laboratory.
Lardi, Martina; Liu, Yilei; Hug, Sebastian; Bolzan de Campos, Samanta; Eberl, Leo; Pessi, Gabriella (2020). Paraburkholderia phymatum STM815 σ54 controls utilization of Dicarboxylates, motility, and T6SS-b expression. Nitrogen, 1(2):81-98.
Grossniklaus, Ueli; Messmer, Monika; Peter, Roland; Romeis, Jörg; Studer, Bruno (2020). Pflanzenzüchtung – von klassischer Kreuzung bis Genom-Editierung. Swiss Academies Factsheet, 15(3):1-5.
Simonini, Sara; Bemer, Marian; Bencivenga, Stefano; Gagliardini, Valeria; Pires, Nuno D; Desvoyes, Bénédicte; van der Graaff, Eric; Gutierrez, Crisanto; Grossniklaus, Ueli (2020). The Polycomb group protein MEDEA controls cell proliferation and embryonic patterning in Arabidopsis. bioRxiv 338707, Cold Spring Harbor Laboratory.
Galindo‐Trigo, Sergio; Blanco‐Touriñán, Noel; DeFalco, Thomas A; Wells, Eloise S; Gray, Julie E; Zipfel, Cyril; Smith, Lisa M (2019). Cr RLK 1L receptor‐like kinases HERK 1 and ANJEA are female determinants of pollen tube reception. EMBO Reports:e48466.
Tsutsui, Hiroki; Yanagisawa, Naoki; Kawakatsu, Yaichi; Ikematsu, Shuka; Sawai, Yu; Tabata, Ryo; Arata, Hideyuki; Higashiyama, Tetsuya; Notaguchi, Michitaka (2019). Micrografting device for testing environmental conditions for grafting and systemic signaling in Arabidopsis. bioRxiv 885525, Cold Spring Harbor Laboratory.
Banerjee, Samiran; Schlaeppi, Klaus; van der Heijden, Marcel G A (2019). Reply to ‘Can we predict microbial keystones?’. Nature Reviews. Microbiology, 17(3):194.
Bergelson, Joy; Mittelstrass, Jana; Horton, Matthew W (2019). Characterizing both bacteria and fungi improves understanding of the Arabidopsis root microbiome. Scientific Reports, 9:24.
Wyder, Stefan; Raissig, Michael T; Grossniklaus, Ueli (2019). Consistent Reanalysis of Genome-wide Imprinting Studies in Plants Using Generalized Linear Models Increases Concordance across Datasets. Scientific Reports, 9(1):1320-..
Sendek, Agnieszka; Karakoç, Canan; Wagg, Cameron; Domínguez-Begines, Jara; do Couto, Gabriela Martucci; van der Heijden, Marcel G A; Naz, Ali Ahmad; Lochner, Alfred; Chatzinotas, Antonis; Klotz, Stefan; Gómez-Aparicio, Lorena; Eisenhauer, Nico (2019). Drought modulates interactions between arbuscular mycorrhizal fungal diversity and barley genotype diversity. Scientific Reports, 9(1):9650.
Wagg, Cameron; Schlaeppi, Klaus; Banerjee, Samiran; Kuramae, Eiko E; van der Heijden, Marcel G A (2019). Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning. Nature Communications, 10:4841.
Sathe, Santosh; Mathew, Anugraha; Agnoli, Kirsty; Eberl, Leo; Kümmerli, Rolf (2019). Genetic architecture constrains exploitation of siderophore cooperation in the bacterium Burkholderia cenocepacia. Evolution Letters, 3(6):610-622.
Kuon, Joel-E; Qi, Weihong; Schläpfer, Pascal; Hirsch-Hoffmann, Matthias; von Bieberstein, Philipp Rogalla; Patrignani, Andrea; Poveda, Lucy; Grob, Stefan; Keller, Miyako; Shimizu-Inatsugi, Rie; Grossniklaus, Ueli; Vanderschuren, Hervé; Gruissem, Wilhelm (2019). Haplotype-resolved genomes of geminivirus-resistant and geminivirus-susceptible African cassava cultivars. BMC Biology, 17(1):75.
Grob, Stefan; Grossniklaus, Ueli (2019). Invasive DNA elements modify the nuclear architecture of their insertion site by KNOT-linked silencing in Arabidopsis thaliana. Genome Biology, 20(1):120.
Rutowicz, Kinga; Lirski, Maciej; Mermaz, Benoît; Teano, Gianluca; Schubert, Jasmin; Mestiri, Imen; Kroteń, Magdalena A; Fabrice, Tohnyui Ndinyanka; Fritz, Simon; Grob, Stefan; Ringli, Christoph; Cherkezyan, Lusik; Barneche, Fredy; Jerzmanowski, Andrzej; Baroux, Célia (2019). Linker histones are fine-scale chromatin architects modulating developmental decisions in Arabidopsis. Genome Biology, 20:157.
Kavagutti, Vinicius S; Andrei, Adrian-Stefan; Mehrshad, Maliheh; Salcher, Michaela M; Ghai, Rohit (2019). Phage-centric ecological interactions in aquatic ecosystems revealed through ultra-deep metagenomics. Microbiome, 7:135.
Monat, Cécile; Padmarasu, Sudharsan; Lux, Thomas; Wicker, Thomas; Gundlach, Heidrun; Himmelbach, Axel; Ens, Jennifer; Li, Chengdao; Muehlbauer, Gary J; Schulman, Alan H; Waugh, Robbie; Braumann, Ilka; Pozniak, Curtis; Scholz, Uwe; Mayer, Klaus F X; Spannagl, Manuel; Stein, Nils; Mascher, Martin (2019). TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools. Genome Biology, 20:284.
Bourras, Salim; Kunz, Lukas; Xue, Minfeng; Praz, Coraline Rosalie; Müller, Marion Claudia; Kälin, Carol; Schläfli, Michael; Ackermann, Patrick; Flückiger, Simon; Parlange, Francis; Menardo, Fabrizio; Schaefer, Luisa Katharina; Ben-David, Roi; Roffler, Stefan; Oberhaensli, Simone; Widrig, Victoria; Lindner, Stefan; Isaksson, Jonatan; Wicker, Thomas; Yu, Dazhao; Keller, Beat (2019). The AvrPm3-Pm3 effector-NLR interactions control both race-specific resistance and host-specificity of cereal mildews on wheat. Nature Communications, 10(1):2292-2308.
Skinner, Colin; Gattinger, Andreas; Krauss, Maike; Krause, Hans-Martin; Mayer, Jochen; van der Heijden, Marcel G A; Mäder, Paul (2019). The impact of long-term organic farming on soil-derived greenhouse gas emissions. Scientific Reports, 9:1702.
Vogler, Hannes; Santos-Fernandez, Gorka; Mecchia, Martin A; Grossniklaus, Ueli (2019). To preserve or to destroy, that is the question: the role of the cell wall integrity pathway in pollen tube growth. Current Opinion in Plant Biology, 52:131-139.
Luther, Anatol; Urfer, Matthias; Zahn, Michael; Müller, Maik; Wang, Shuang-Yan; Mondal, Milon; Vitale, Alessandra; Hartmann, Jean-Baptiste; Sharpe, Timothy; Monte, Fabio Lo; Kocherla, Harsha; Cline, Elizabeth; Pessi, Gabriella; Rath, Parthasarathi; Modaresi, Seyed Majed; Chiquet, Petra; Stiegeler, Sarah; Verbree, Carolin; Remus, Tobias; Schmitt, Michel; Kolopp, Caroline; Westwood, Marie-Anne; Desjonquères, Nicolas; Brabet, Emile; Hell, Sophie; LePoupon, Karen; Vermeulen, Annie; Jaisson, Régis; Rithié, Virginie; Upert, Grégory; Lederer, A; Zbinden, P; Wach, A; Moehle, Kerstin; Zerbe, Katja; Locher, H H; Bernardini, Federico; Dale, G E; Eberl, Leo; Wollscheid, Bernd; Hiller, Sebastian; Robinson, J A; Obrecht, D (2019). Chimeric peptidomimetic antibiotics against Gram-negative bacteria. Nature, 576(7787):452-458.
Loaiza Puerta, Viviana; Six, Johan; Wittwer, Raphael; van der Heijden, Marcel; Pujol Pereira, Engil Isadora (2019). Comparable bacterial-mediated nitrogen supply and losses under organic reduced tillage and conventional intensive tillage. Soil Biology and Biochemistry, 95:103121.
Herzog, Chantal; Honegger, Adrian; Hegglin, Django; Wittwer, Raphaël; de Ferron, Anne; Verbruggen, Erik; Jeanneret, Philippe; Schloter, Michael; Banerjee, Samiran; van der Heijden, Marcel G A (2019). Crop yield, weed cover and ecosystem multifunctionality are not affected by the duration of organic management. Agriculture, Ecosystems & Environment, 284:106596.
Salcher, Michaela M; Schaefle, Daniel; Kaspar, Melissa; Neuenschwander, Stefan M; Ghai, Rohit (2019). Evolution in action: habitat transition from sediment to the pelagial leads to genome streamlining in Methylophilaceae. The ISME journal, 13(11):2764-2777.
Silva, Marisa O D; Pernthaler, Jakob (2019). Priming of microcystin degradation in carbon-amended membrane biofilm communities is promoted by oxygen-limited conditions. FEMS Microbiology Ecology, 95(11):157.
Sailer, Christian; Stöcklin, Jürg; Grossniklaus, Ueli (2019). Dynamics of apomictic and sexual reproduction during primary succession on a glacier forefield in the Swiss Alps. bioRxiv 807651, Cold Spring Harbor Laboratory.
Kartal, Önder; Schmid, Marc W; Grossniklaus, Ueli (2019). Cell Type-specific Genome Scans of DNA Methylation Diversity Indicate an Important Role for Transposable Elements. bioRxiv 801233, Cold Spring Harbor Laboratory.
O'Brien, Siobhán; Kümmerli, Rolf; Paterson, Steve; Winstanley, Craig; Brockhurst, Michael A (2019). Transposable temperate phages promote the evolution of divergent social strategies in Pseudomonas aeruginosa populations. Proceedings of the Royal Society of London, Series B: Biological Sciences, 286(1912):20191794.
Drinnenberg, Ines A; Berger, Frédéric; Elsässer, Simon J; Andersen, Peter R; Ausió, Juan; Bickmore, Wendy A; Blackwell, Alexander R; Erwin, Douglas H; Gahan, James M; Gaut, Brandon S; Harvey, Zachary H; Henikoff, Steven; Kao, Joyce Y; Kurdistani, Siavash K; Lemos, Bernardo; Levine, Mia T; Luger, Karolin; Malik, Harmit S; Martín-Durán, José M; Peichel, Catherine L; Renfree, Marilyn B; Rutowicz, Kinga; Sarkies, Peter; Schmitz, Robert J; Technau, Ulrich; Thornton, Joseph W; Warnecke, Tobias; Wolfe, Kenneth H (2019). EvoChromo: towards a synthesis of chromatin biology and evolution. Development, 146(19):dev178962.
Rezzoagli, Chiara; Granato, Elisa T; Kümmerli, Rolf (2019). In-vivo microscopy reveals the impact of Pseudomonas aeruginosa social interactions on host colonization. The ISME journal, 13(10):2403-2414.
Eckert, Ester M; Di Cesare, Andrea; Malki, Lala-Sakina; Villiger, Jörg; Pernthaler, Jakob; Callieri, Cristiana; Bertoni, Roberto; Corno, Gianluca (2019). Seasonality of the antibiotic resistance gene blaCTX-M in temperate Lake Maggiore. Hydrobiologia, 843(1):143-153.
Süssenbacher, Iris; Menghini, Damian; Scherzer, Gerhard; Salinger, Kathrin; Erhart, Theresia; Moser, Simone; Vergeiner, Clemens; Hörtensteiner, Stefan; Kräutler, Bernhard (2019). Cryptic chlorophyll breakdown in non-senescent green Arabidopsis thaliana leaves. Photosynthesis Research, 142(1):69-85.
Xie, Zuokun; Wu, Shengdong; Chen, Junyi; Zhu, Xiaoyu; Zhou, Xin; Hörtensteiner, Stefan; Ren, Guodong; Kuai, Benke (2019). The C-terminal cysteine-rich motif of NYE1/SGR1 is indispensable for its function in chlorophyll degradation in Arabidopsis. Plant molecular biology, 101(3):257-268.
Schreier, Tina B; Umhang, Martin; Lee, Sang-Kyu; Lue, Wei-Ling; Shen, Zhouxin; Silver, Dylan; Graf, Alexander; Müller, Antonia; Eicke, Simona; Stadler-Waibel, Martha; Seung, David; Bischof, Sylvain; Briggs, Steven P; Kötting, Oliver; Moorhead, Greg B G; Chen, Jychian; Zeeman, Samuel C (2019). LIKE SEX4 1 Acts as a β-Amylase-Binding Scaffold on Starch Granules during Starch Degradation. Plant Cell, 31(9):2169-2186.
Herger, Aline; Dünser, Kai; Kleine-Vehn, Jürgen; Ringli, Christoph (2019). Leucine-Rich Repeat Extensin Proteins and Their Role in Cell Wall Sensing. Current Biology, 29(17):R851-R858.
Šimek, Karel; Grujčić, Vesna; Nedoma, Jiří; Jezberová, Jitka; Šorf, Michal; Matoušů, Anna; Pechar, Libor; Posch, Thomas; Bruni, Estelle P; Vrba, Jaroslav (2019). Microbial food webs in hypertrophic fishponds: Omnivorous ciliate taxa are major protistan bacterivores. Limnology and Oceanography, 64(5):2295-2309.
De Vrieze, Mout; Gloor, Ramona; Massana Codina, Josep; Torriani, Stefano; Gindro, Katia; L'Haridon, Floriane; Bailly, Aurélien; Weisskopf, Laure (2019). Biocontrol Activity of Three Pseudomonas in a Newly Assembled Collection of Phytophthora infestans Isolates. Phytopathology, 109(9):1555-1565.
Reimer, Marie; Ringselle, Björn; Bergkvist, Göran; Westaway, Sally; Wittwer, Raphaël; Baresel, Jörg Peter; van der Heijden, Marcel G A; Mangerud, Kjell; Finckh, Maria R; Brandsæter, Lars Olav (2019). Interactive Effects of Subsidiary Crops and Weed Pressure in the Transition Period to Non-Inversion Tillage, A Case Study of Six Sites Across Northern and Central Europe. Agronomy, 9(9):495.
Yu, Dade; Wildhagen, Henning; Tylewicz, Szymon; Miskolczi, Pal C; Bhalerao, Rishikesh P; Polle, Andrea (2019). Abscisic acid signalling mediates biomass trade‐off and allocation in poplar. New Phytologist, 223(3):1192-1203.
Xiao, Yu; Stegmann, Martin; Han, Zhifu; DeFalco, Thomas A; Parys, Katarzyna; Xu, Li; Belkhadir, Youssef; Zipfel, Cyril; Chai, Jijie (2019). Mechanisms of RALF peptide perception by a heterotypic receptor complex. Nature, 572(7768):270-274.
Tsutsui, Hiroki; Sato, Yoshikatsu; Susaki, Daichi; Higashiyama, Tetsuya (2019). Microtubule depletion domain 1 localizes at the boundary between female gametes in Arabidopsis thaliana. Molecular Reproduction and Development, 86(8):925.
Amorim-Silva, Vitor; Garcia-Moreno, Alvaro; Castillo, Araceli G; Lakhssassi, Naoufal; Del Valle, Alicia Esteban; Perez-Sancho, Jessica; Li, Yansha; Pose, David; Perez-Rodriguez, Josefa; Lin, Jinxing; Valpuesta, Victoriano; Borsani, Omar; Zipfel, Cyril; Macho, Alberto P; Botella, Miguel A (2019). TTL proteins scaffold brassinosteroid signaling components at the plasma membrane to optimize signal transduction in Arabidopsis. Plant Cell, 31(8):1807-1828.
Gimeno, Alejandro; Sohlberg, Elina; Pakula, Tiina; Limnell, Jenni; Keller, Beat; Laitila, Arja; Vogelgsang, Susanne (2019). TaqMan qPCR for Quantification of Clonostachys rosea Used as a Biological Control Agent Against Fusarium graminearum. Frontiers in Microbiology, 10:1627.
Burri, Jan T; Saikia, Eashan; Läubli, Nino F; Vogler, Hannes; Wittel, Falk K; Rüggeberg, Markus; Herrmann, Hans J; Burgert, Ingo; Nelson, Bradley J; Grossniklaus, Ueli (2019). The mechanical basis for snapping of the Venus flytrap, Darwin’s ‘most wonderful plant in the world’. bioRxiv 697797, Cold Spring Harbor Laboratory.
Wong, Jaslyn E M M; Nadzieja, Marcin; Madsen, Lene H; Bücherl, Christoph A; Dam, Svend; Sandal, Niels N; Couto, Daniel; Derbyshire, Paul; Uldum-Berentsen, Mette; Schroeder, Sina; Schwämmle, Veit; Nogueira, Fábio C S; Asmussen, Mette H; Thirup, Søren; Radutoiu, Simona; Blaise, Mickaël; Andersen, Kasper R; Menke, Frank L H; Zipfel, Cyril; Stougaard, Jens (2019). A Lotus japonicus cytoplasmic kinase connects Nod factor perception by the NFR5 LysM receptor to nodulation. Proceedings of the National Academy of Sciences of the United States of America, 116(28):14339-14348.
Moussu, Steven; Broyart, Caroline; Santos-Fernandez, Gorka; Augustin, Sebastian; Wehrle, Sarah; Grossniklaus, Ueli; Santiago, Julia (2019). Structural basis for recognition of RALF peptides by LRX proteins during pollen tube growth. bioRxiv 695874, Cold Spring Harbor Laboratory.
Banerjee, Samiran; Walder, Florian; Büchi, Lucie; Meyer, Marcel; Held, Alain Y; Gattinger, Andreas; Keller, Thomas; Charles, Raphael; van der Heijden, Marcel G A (2019). Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots. The ISME journal, 13(7):1722-1736.
Bulzu, Paul-Adrian; Andrei, Adrian-Stefan; Salcher, Michaela M; Mehrshad, Maliheh; Inoue, Keiichi; Kandori, Hideki; Beja, Oded; Ghai, Rohit; Banciu, Horia L (2019). Casting light on Asgardarchaeota metabolism in a sunlit microoxic niche. Nature Microbiology, 4(7):1129-1137.
Fernández, Iván; Cosme, Marco; Stringlis, Ioannis A; Yu, Ke; de Jonge, Ronnie; van Wees, Saskia C M; Pozo, Maria J; Pieterse, Corné M J; van der Heijden, Marcel G A (2019). Molecular dialogue between arbuscular mycorrhizal fungi and the nonhost plant Arabidopsis thaliana switches from initial detection to antagonism. New Phytologist, 223(2):867-881.
Díaz, Mariana; Pečinková, Petra; Nowicka, Anna; Baroux, Célia; Sakamoto, Takuya; Gandha, Priscilla Yuliani; Jeřábková, Hana; Matsunaga, Sachihiro; Grossniklaus, Ueli; Pecinka, Ales (2019). The SMC5/6 Complex Subunit NSE4A Is Involved in DNA Damage Repair and Seed Development. Plant Cell, 31(7):1579-1597.
Callieri, Cristiana; Slabakova, Violeta; Dzhembekova, Nina; Slabakova, Nataliya; Peneva, Elisaveta; Cabello-Yeves, Pedro J; Di Cesare, Andrea; Eckert, Ester M; Bertoni, Roberto; Corno, Gianluca; Salcher, Michaela M; Kamburska, Lyudmila; Bertoni, Filippo; Moncheva, Snejana (2019). The mesopelagic anoxic Black Sea as an unexpected habitat for Synechococcus challenges our understanding of global “deep red fluorescence”. The ISME journal, 13(7):1676-1687.
Miskolczi, Pál; Singh, Rajesh Kumar; Tylewicz, Szymon; Azeez, Abdul; Maurya, Jay P; Tarkowská, Danuše; Novák, Ondřej; Jonsson, Kristoffer; Bhalerao, Rishikesh P (2019). Long-range mobile signals mediate seasonal control of shoot growth. Proceedings of the National Academy of Sciences of the United States of America, 116(22):10852-10857.
Steinbach, Yvonne (2019). The Arabidopsis thaliana CONSTANS-LIKE 4 (COL4) – A Modulator of Flowering Time. Frontiers in Plant Science, 10:651.
Wuest, Samuel E; Pires, Nuno D; Luo, Shan; Vasseur, Francois; Messier, Julie; Grossniklaus, Ueli; Niklaus, Pascal A (2019). Increasing plant group productivity through latent genetic variation for cooperation. bioRxiv 641449, Cold Spring Harbor Laboratory.
Kierzkowski, Daniel; Runions, Adam; Vuolo, Francesco; Strauss, Sören; Lymbouridou, Rena; Routier-Kierzkowska, Anne-Lise; Wilson-Sánchez, David; Jenke, Hannah; Galinha, Carla; Mosca, Gabriella; Zhang, Zhongjuan; Canales, Claudia; Dello Ioio, Raffaele; Huijser, Peter; Smith, Richard S; Tsiantis, Miltos (2019). A Growth-Based Framework for Leaf Shape Development and Diversity. Cell, 177(6):1405-1418.e17.
Wechsler, Tobias; Kümmerli, Rolf; Dobay, Akos (2019). Understanding policing as a mechanism of cheater control in cooperating bacteria. Journal of Evolutionary Biology, 32(5):412-424.
Lammertz, Meltem; Kuhn, Hannah; Pfeilmeier, Sebastian; Malone, Jacob; Zipfel, Cyril; Kwaaitaal, Mark; Lin, Nai-Chun; Kvitko, Brian H; Panstruga, Ralph (2019). Widely Conserved Attenuation of Plant MAMP-Induced Calcium Influx by Bacteria Depends on Multiple Virulence Factors and May Involve Desensitization of Host Pattern Recognition Receptors. Molecular Plant-Microbe Interactions, 32(5):608-621.
Silva, Marisa O D; Desmond, Peter; Derlon, Nicolas; Morgenroth, Eberhard; Pernthaler, Jakob (2019). Source Community and Assembly Processes Affect the Efficiency of Microbial Microcystin Degradation on Drinking Water Filtration Membranes. Frontiers in Microbiology, 10:843.
Schaufelberger, Myriam; Galbier, Florian; Herger, Aline; de Brito Francisco, Rita; Roffler, Stefan; Clement, Gilles; Diet, Anouck; Hörtensteiner, Stefan; Wicker, Thomas; Ringli, Christoph (2019). Mutations in the Arabidopsis ROL17/isopropylmalate synthase 1 locus alter amino acid content, modify the TOR network, and suppress the root hair cell development mutant lrx1. Journal of Experimental Botany, 70(8):2313-2323.
Brukhin, Vladimir; Osadtchiy, Jaroslaw V; Florez-Rueda, Ana Marcela; Smetanin, Dmitry; Bakin, Evgeny; Nobre, Margarida Sofia; Grossniklaus, Ueli (2019). The Boechera Genus as a Resource for Apomixis Research. Frontiers in Plant Science:10:392.
Burri, Jan T; Vogler, Hannes; Munglani, Gautam; Laubli, Nino F; Grossniklaus, Ueli; Nelson, Bradley J (2019). A Microrobotic System for Simultaneous Measurement of Turgor Pressure and Cell-Wall Elasticity of Individual Growing Plant Cells. IEEE Robotics and Automation Letters, 4(2):641-646.
Dünser, Kai; Gupta, Shibu; Herger, Aline; Feraru, Mugurel I; Ringli, Christoph; Kleine‐Vehn, Jürgen (2019). Extracellular matrix sensing by FERONIA and Leucine‐Rich Repeat Extensins controls vacuolar expansion during cellular elongation in Arabidopsis thaliana. The EMBO Journal, 38(7):1-12.
Schiessl, Konstanze T; Ross‐Gillespie, Adin; Cornforth, Daniel M; Weigert, Michael; Bigosch, Colette; Brown, Sam P; Ackermann, Martin; Kümmerli, Rolf (2019). Individual‐ versus group‐optimality in the production of secreted bacterial compounds. Evolution, 73(4):675-688.
Andrei, Adrian-Stefan; Salcher, Michaela M; Mehrshad, Maliheh; Rychtecký, Pavel; Znachor, Petr; Ghai, Rohit (2019). Niche-directed evolution modulates genome architecture in freshwater Planctomycetes. The ISME journal, 13(4):1056-1071.
Brulé, Daphnée; Villano, Clizia; Davies, Laura J; Trdá, Lucie; Claverie, Justine; Héloir, Marie-Claire; Chiltz, Annick; Adrian, Marielle; Darblade, Benoît; Tornero, Pablo; Stransfeld, Lena; Boutrot, Freddy; Zipfel, Cyril; Dry, Ian B; Poinssot, Benoit (2019). The grapevine (Vitis vinifera) LysM receptor kinases VvLYK1-1 and VvLYK1-2 mediate chitooligosaccharide-triggered immunity. Plant Biotechnology Journal, 17(4):812-825.
Straub, Hervé; Bigger, Claudio M; Valentin, Jules; Abt, Dominik; Qin, Xiao-Hua; Eberl, Leo; Maniura-Weber, Katharina; Ren, Qun (2019). Bacterial Adhesion on Soft Materials: Passive Physicochemical Interactions or Active Bacterial Mechanosensing? Advanced Healthcare Materials, 8(8):e1801323.
Colombi, Tino; Walder, Florian; Büchi, Lucie; Sommer, Marlies; Liu, Kexing; Six, Johan; van der Heijden, Marcel G A; Charles, Raphaël; Keller, Thomas (2019). On-farm study reveals positive relationship between gas transport capacity and organic carbon content in arable soil. SOIL, 5(1):91-105.
Läubli, Nino F; Shamsudhin, Naveen; Vogler, Hannes; Munglani, Gautam; Grossniklaus, Ueli; Ahmed, Daniel; Nelson, Bradley J (2019). 3D Manipulation and Imaging of Plant Cells using Acoustically Activated Microbubbles. Small Methods, 3(3):1800527.
Müller, Marion C; Praz, Coraline R; Sotiropoulos, Alexandros G; Menardo, Fabrizio; Kunz, Lukas; Schudel, Seraina; Oberhänsli, Simone; Poretti, Manuel; Wehrli, Andreas; Bourras, Salim; Keller, Beat; Wicker, Thomas (2019). A chromosome-scale genome assembly reveals a highly dynamic effector repertoire of wheat powdery mildew. New Phytologist, 221(4):2176-2189.
Wan, Wei‐Lin; Zhang, Lisha; Pruitt, Rory; Zaidem, Maricris; Brugman, Rik; Ma, Xiyu; Krol, Elzbieta; Perraki, Artemis; Kilian, Joachim; Grossmann, Guido; Stahl, Mark; Shan, Libo; Zipfel, Cyril; van Kan, Jan A L; Hedrich, Rainer; Weigel, Detlef; Gust, Andrea A; Nürnberger, Thorsten (2019). Comparing Arabidopsis receptor kinase and receptor protein‐mediated immune signaling reveals BIK1‐dependent differences. New Phytologist, 221(4):2080-2095.
Sánchez-Martín, Javier; Keller, Beat (2019). Contribution of recent technological advances to future resistance breeding. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 132(3):713-732.
Bender, S Franz; Schlaeppi, Klaus; Held, Alain; Van der Heijden, Marcel G A (2019). Establishment success and crop growth effects of an arbuscular mycorrhizal fungus inoculated into Swiss corn fields. Agriculture, Ecosystems & Environment, 273:13-24.
Pfeilmeier, Sebastian; George, Jeoffrey; Morel, Arry; Roy, Sonali; Smoker, Matthew; Stransfeld, Lena; Downie, J Allan; Peeters, Nemo; Malone, Jacob G; Zipfel, Cyril (2019). Expression of the Arabidopsis thaliana immune receptor EFR in Medicago truncatula reduces infection by a root pathogenic bacterium, but not nitrogen‐fixing rhizobial symbiosis. Plant Biotechnology Journal, 17(3):569-579.
Chung, Yuhee; Zhu, Yang; Wu, Miin-Feng; Simonini, Sara; Kuhn, Andre; Armenta-Medina, Alma; Jin, Run; Østergaard, Lars; Gillmor, C Stewart; Wagner, Doris (2019). Auxin Response Factors promote organogenesis by chromatin-mediated repression of the pluripotency gene SHOOTMERISTEMLESS. Nature Communications, 10(1):886.
Saur, Isabel M L; Bauer, Saskia; Kracher, Barbara; Lu, Xunli; Franzeskakis, Lamprinos; Müller, Marion C; Sabelleck, Bjo ̈rn; Kümmel, Florian; Panstruga, Ralph; Maekawa, Takaki; Schulze-Lefert, Paul (2019). Multiple pairs of allelic MLA immune receptor-powdery mildew AVRA effectors argue for a direct recognition mechanism. eLife, 8:e44471.
Pitsch, Gianna; Bruni, Estelle Patricia; Forster, Dominik; Qu, Zhishuai; Sonntag, Bettina; Stoeck, Thorsten; Posch, Thomas (2019). Seasonality of Planktonic Freshwater Ciliates: Are Analyses Based on V9 Regions of the 18S rRNA Gene Correlated With Morphospecies Counts? Frontiers in Microbiology, 10:248.
Seitz, Steffen; Goebes, Philipp; Puerta, Viviana Loaiza; Pereira, Engil Isadora Pujol; Wittwer, Raphaël; Six, Johan; van der Heijden, Marcel G A; Scholten, Thomas (2019). Conservation tillage and organic farming reduce soil erosion. Agronomy for Sustainable Development, 39(1):4.
Koller, Teresa; Brunner, Susanne; Herren, Gerhard; Sanchez-Martin, Javier; Hurni, Severine; Keller, Beat (2019). Field grown transgenic Pm3e wheat lines show powdery mildew resistance and no fitness costs associated with high transgene expression. Transgenic research, 28(1):9-20.
Milner, Sara G; Jost, Matthias; Taketa, Shin; et al; Herren, Gerhard; Müller, Thomas; Krattinger, Simon G; Keller, Beat (2019). Genebank genomics highlights the diversity of a global barley collection. Nature Genetics, 51(2):319-326.
Kramer, Jos; Meunier, Joël (2019). The other facets of family life and their role in the evolution of animal sociality. Biological Reviews of the Cambridge Philosophical Society, 94(1):199-215.
Spiewak, Helena L; Shastri, Sravanthi; Zhang, Lili; Schwager, Stephan; Eberl, Leo; Vergunst, Annette C; Thomas, Mark S (2019). Burkholderia cenocepacia utilizes a type VI secretion system for bacterial competition. MicrobiologyOpen:e774.
Hsiao, Chien-Chi; Sieber, Simon; Georgiou, Antri; Bailly, Aurélien; Emmanouilidou, Despina; Carlier, Aurélien; Eberl, Leo; Gademann, Karl (2019). Synthesis and Biological Evaluation of the Novel Growth Inhibitor Streptol Glucoside, Isolated from an Obligate Plant Symbiont. Chemistry - A European Journal, 25(7):1722-1726.
Hörtensteiner, Stefan; Hauenstein, Mareike; Kräutler, Bernhard (2019). Chlorophyll breakdown—Regulation, biochemistry and phyllobilins as its products. In: Grimm, Bernhard. Metabolism, Structure and Function of Plant Tetrapyrroles: Introduction, Microbial and Eukaryotic Chlorophyll Synthesis and Catabolism. London: Elsevier, 213-271.
Schöneberg, T; Kibler, K; Wettstein, F E; Bucheli, T D; Forrer, H R; Musa, T; Mascher, F; Bertossa, M; Keller, B; Vogelgsang, S (2019). Influence of temperature, humidity duration and growth stage on the infection and mycotoxin production by Fusarium langsethiae and Fusarium poae in oats. Plant Pathology Journal, 68(1):173-184.
Bodenhausen, Natacha; Somerville, Vincent; Desirò, Alessandro; Walser, Jean-Claude; Borghi, Lorenzo; van der Heijden, Marcel G A; Schlaeppi, Klaus (2019). Petunia- and Arabidopsis-Specific Root Microbiota Responses to Phosphate Supplementation. Phytobiomes Journal, 3(2):112-124.
Dumur, Tao; Duncan, Susan; Graumann, Katja; Desset, Sophie; Randall, Ricardo S; Scheid, Ortrun Mittelsten; Prodanov, Dimiter; Tatout, Christophe; Baroux, Célia (2019). Probing the 3D architecture of the plant nucleus with microscopy approaches: challenges and solutions. Nucleus, 10(1):181-212.
Baroux, Célia; Grossniklaus, Ueli (2019). Seeds—An evolutionary innovation underlying reproductive success in flowering plants. In: Grossniklaus, Ueli. Plant Development and Evolution. Amsterdam: Academic Press, 605-642.
Zélé, Flore; Santos-Matos, Gonçalo; Figueiredo, Alexandre R T; Eira, Cátia; Pinto, Catarina; Laurentino, Telma G; Sucena, Élio; Magalhães, Sara (2019). Spider mites escape bacterial infection by avoiding contaminated food. Oecologia, 189(1):111-122.
Archetti, Martina. Combining antibiotics and antivirulence compounds against Pseudomonas aeruginosa PAO1. 2019, University of Zurich, Faculty of Science.
Toyofuku, Masanori; Nomura, Nobuhiko; Eberl, Leo (2019). Types and origins of bacterial membrane vesicles. Nature Reviews. Microbiology, 17(1):13-24.
Fernández, Noemí; Cabrera, Juan J; Varadarajan, Adithi R; Lutz, Stefanie; Ledermann, Raphael; Roschitzki, Bernd; Eberl, Leo; Bedmar, Eulogio J; Fischer, Hans-Martin; Pessi, Gabriella; Ahrens, Christian H; Mesa, Socorro (2019). An Integrated Systems Approach Unveils New Aspects of Microoxia-Mediated Regulation in Bradyrhizobium diazoefficiens. Frontiers in Microbiology, 10:924.
Gupta, Shibu. Analysis of LRXs an their downstream components in cell growth regulation in Arabidopsis thaliana. 2019, University of Zurich, Faculty of Science.
Bigger, Claudio Manuel. Bacterial Adhesion on Soft Materials: Passive Physicochemical Interactions or Active Bacterial Mechanosensing? 2019, University of Zurich, Faculty of Medicine.
Sheng, Song. Chlorophyll breakdown : characterization of vacuolar chlorophyll catabolite transport. 2019, University of Zurich, Faculty of Science.
Hauenstein, Mareike Luca. Chlorophyll breakdown: side chain modifications of chlorophyll catabolites. 2019, University of Zurich, Faculty of Science.
Pitsch, Gianna. Ciliates in freshwater ecosystems : insights from morphological and molecular approaches. 2019, University of Zurich, Faculty of Science.
Florez-Rueda, Ana Marcela; Fiscalini, Flurin; Roth, Morgane; Grossniklaus, Ueli; Städler, Thomas (2019). Endosperm and seed transcriptomes reveal possible roles for small RNA pathways in wild tomato hybrid seed failure. bioRxiv 884387, Cold Spring Harbor Laboratory.
Simonini, Sara; Østergaard, Lars (2019). Female reproductive organ formation: A multitasking endeavor. Current Topics in Developmental Biology, 131:337-371.
Praz, Coraline Rosalie. Genetic, genomic and transcriptomic analysis of the cereal - powdery mildew pathosystem. 2019, University of Zurich, Faculty of Science.
Mannweiler, Olga. Mechanisms of competition and genome defense in Burkholderia cenocepacia H111. 2019, University of Zurich, Faculty of Science.
Plant Development and Evolution. Edited by: Grossniklaus, Ueli (2019). Amsterdam: Academic Press.
Kadota, Yasuhiro; Liebrand, Thomas W H; Goto, Yukihisa; Sklenar, Jan; Derbyshire, Paul; Menke, Frank L H; Torres, Miguel-Angel; Molina, Antonio; Zipfel, Cyril; Coaker, Gitta; Shirasu, Ken (2019). Quantitative phosphoproteomic analysis reveals common regulatory mechanisms between effector- and PAMP-triggered immunity in plants. New Phytologist, 221:2160-2175.
Moles, Tommaso Michele; de Brito Francisco, Rita; Mariotti, Lorenzo; Pompeiano, Antonio; Lupini, Antonio; Incrocci, Luca; Carmassi, Giulia; Scartazza, Andrea; Pistelli, Laura; Guglielminetti, Lorenzo; Pardossi, Alberto; Sunseri, Francesco; Hörtensteiner, Stefan; Santelia, Diana (2019). Salinity in Autumn-Winter Season and Fruit Quality of Tomato Landraces. Frontiers in Plant Science, 10:1078.
Calderón, Claudia E; Tienda, Sandra; Heredia-Ponce, Zaira; Arrebola, Eva; Cárcamo-Oyarce, Gerardo; Eberl, Leo; Cazorla, Francisco M (2019). The Compound 2-Hexyl, 5-Propyl Resorcinol Has a Key Role in Biofilm Formation by the Biocontrol Rhizobacterium Pseudomonas chlororaphis PCL1606. Frontiers in Microbiology, 10:396.
Thalmann, Matthias; Coiro, Mario; Meier, Tiago; Wicker, Thomas; Zeeman, Samuel C; Santelia, Diana (2019). The evolution of functional complexity within the β-amylase gene family in land plants. BMC Evolutionary Biology:19:66.
Singh, Rajesh Kumar; Maurya, Jay P; Azeez, Abdul; Miskolczi, Pal; Tylewicz, Szymon; Stojkovič, Katja; Delhomme, Nicolas; Busov, Victor; Bhalerao, Rishikesh P (2018). A genetic network mediating the control of bud break in hybrid aspen. Nature Communications, 9:4173.
Knapp, Samuel; van der Heijden, Marcel G A (2018). A global meta-analysis of yield stability in organic and conservation agriculture. Nature Communications, 9:3632.
Wuest, Samuel E; Niklaus, Pascal A (2018). A plant biodiversity effect resolved to a single chromosomal region. Nature Ecology and Evolution, 2(12):1933-1939.
Kirioukhova, Olga; Shah, Jubin N; Larsen, Danaé S; Tayyab, Muhammad; Mueller, Nora E; Govind, Geetha; Baroux, Célia; Federer, Michael; Gheyselinck, Jacqueline; Barrell, Philippa J; Ma, Hong; Sprunck, Stefanie; Huettel, Bruno; Wallace, Helen; Grossniklaus, Ueli; Johnston, Amal J (2018). Aberrant imprinting may underlie evolution of parthenogenesis. Scientific Reports, 8:10626.
Bourras, Salim; Praz, Coraline R; Spanu, Pietro D; Keller, Beat (2018). Cereal powdery mildew effectors: a complex toolbox for an obligate pathogen. Current Opinion in Microbiology, 46:26-33.
Thind, Anupriya Kaur; Wicker, Thomas; Müller, Thomas; Ackermann, Patrick M; Steuernagel, Burkhard; Wulff, Brande B H; Spannagl, Manuel; Twardziok, Sven O; Felder, Marius; Lux, Thomas; Mayer, Klaus F X; Keller, Beat; Krattinger, Simon G (2018). Chromosome-scale comparative sequence analysis unravels molecular mechanisms of genome dynamics between two wheat cultivars. Genome Biology, 19:104.
Li, B; Förster, C; Robert, C A M; Züst, T; Hu, L; Machado, R A R; Berset, J-D; Handrick, V; Knauer, T; Hensel, G; Chen, W; Kumlehn, J; Yang, P; Keller, B; Gershenzon, J; Jander, G; Köllner, T G; Erb, M (2018). Convergent evolution of a metabolic switch between aphid and caterpillar resistance in cereals. Science Advances, 4(12):eaat6797.
Schmid, Marc W; Giraldo-Fonseca, Alejandro; Rövekamp, Moritz; Smetanin, Dmitry; Bowman, John L; Grossniklaus, Ueli (2018). Extensive epigenetic reprogramming during the life cycle of Marchantia polymorpha. Genome Biology, 19(1):9-..
Di Cesare, Andrea; Cabello-Yeves, Pedro J; Chrismas, Nathan A M; Sánchez-Baracaldo, Patricia; Salcher, Michaela M; Callieri, Cristiana (2018). Genome analysis of the freshwater planktonic Vulcanococcus limneticus sp. nov. reveals horizontal transfer of nitrogenase operon and alternative pathways of nitrogen utilization. BMC Genomics, 19(1):259.
Mehrshad, Maliheh; Salcher, Michaela M; Okazaki, Yusuke; Nakano, Shin-ichi; Šimek, Karel; Andrei, Adrian-Stefan; Ghai, Rohit (2018). Hidden in plain sight—highly abundant and diverse planktonic freshwater Chloroflexi. Microbiome, 6(1):176.
Sirová, Dagmara; Bárta, Jiří; Šimek, Karel; Posch, Thomas; Pech, Jiří; Stone, James; Borovec, Jakub; Adamec, Lubomír; Vrba, Jaroslav (2018). Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant. Microbiome, 6(1):225.
Granato, Elisa T; Ziegenhain, Christoph; Marvig, Rasmus L; Kümmerli, Rolf (2018). Low spatial structure and selection against secreted virulence factors attenuates pathogenicity in Pseudomonas aeruginosa. The ISME journal, 12(12):2907-2918.
Paape, Timothy; Briskine, Roman V; Halstead-Nussloch, Gwyneth; Lischer, Heidi E L; Shimizu-Inatsugi, Rie; Hatakeyama, Masaomi; Tanaka, Kenta; Nishiyama, Tomoaki; Sabirov, Renat; Sese, Jun; Shimizu, Kentaro K (2018). Patterns of polymorphism and selection in the subgenomes of the allopolyploid Arabidopsis kamchatica. Nature Communications, 9:3909.
Kunwar, Sanju; Iriarte, Fanny; Fan, Qiurong; da Silva, Eduardo Evaristo; Ritchie, Laura; Nguyen, Nghi Song; Freeman, Joshua H; Stall, Robert E; Jones, Jeffrey B; Minsavage, Gerald V; Colee, James; Scott, Jay W; Vallad, Gary E; Zipfel, Cyril; Horvath, Diana; Westwood, Jack; Hutton, Samuel F; Paret, Mathews L (2018). Transgenic Expression of EFR and Bs2 Genes for Field Management of Bacterial Wilt and Bacterial Spot of Tomato. Phytopathology, 108(12):1402-1411.
Gomes, Margarida C; Tasrini, Yara; Subramoni, Sujatha; Agnoli, Kirsty; Feliciano, Joana R; Eberl, Leo; Sokol, Pamela; O'Callaghan, David; Vergunst, Annette C (2018). The afc antifungal activity cluster, which is under tight regulatory control of ShvR, is essential for transition from intracellular persistence of Burkholderia cenocepacia to acute pro-inflammatory infection. PLoS Pathogens, 14(12):e1007473.
Deppe, Johannes P; Rabbat, Ritta; Hörtensteiner, Stefan; Keller, Beat; Martinoia, Enrico; Lopéz-Marqués, Rosa L (2018). The wheat ABC transporter Lr34 modifies the lipid environment at the plasma membrane. Journal of Biological Chemistry, 293(48):18667-18679.
Okazaki, Yusuke; Salcher, Michaela M; Callieri, Cristiana; Nakano, Shin-ichi (2018). The Broad Habitat Spectrum of the CL500-11 Lineage (Phylum Chloroflexi), a Dominant Bacterioplankton in Oxygenated Hypolimnia of Deep Freshwater Lakes. Frontiers in Microbiology, 9:2891.
Hörtensteiner, Stefan (2018). Intraorganellar Enzyme Partitioning: A Novel Layer of Chlorophyll Biosynthesis Regulation. Plant & Cell Physiology, 59(11):2167-2168.
Neuenschwander, Stefan M; Ghai, Rohit; Pernthaler, Jakob; Salcher, Michaela M (2018). Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria. The ISME journal, 12:185-198.
Mozgova, Iva; Alexandre, Cristina; Steinbach, Yvonne; Derkacheva, Maria; Schäfer, Eberhard; Gruissem, Wilhelm (2018). A tribute to Lars Hennig (1970–2018). Journal of Experimental Botany, 69(21):4989-4990.
Alfreider, Albin; Grimus, Victoria; Luger, Martin; Ekblad, Anja; Salcher, Michaela M; Summerer, Monika (2018). Autotrophic carbon fixation strategies used by nitrifying prokaryotes in freshwater lakes. FEMS Microbiology Ecology, 94(10):fiy163.
Sathe, Santosh; Nanjundiah, Vidyanand (2018). Complex interactions underpin social behaviour in Dictyostelium giganteum. Behavioral Ecology and Sociobiology:72:167.
Butaitė, Elena; Kramer, Jos; Wyder, Stefan; Kümmerli, Rolf (2018). Environmental determinants of pyoverdine production, exploitation and competition in natural Pseudomonas communities. Environmental Microbiology, 20(10):3629-3642.
Singh, Simrat Pal; Hurni, Severine; Ruinelli, Michela; Brunner, Susanne; Sanchez-Martin, Javier; Krukowski, Patricia; Peditto, David; Buchmann, Gabriele; Zbinden, Helen; Keller, Beat (2018). Evolutionary divergence of the rye Pm17 and Pm8 resistance genes reveals ancient diversity. Plant molecular biology, 98(3):249-260.
Burri, Jan T; Vogler, Hannes; Läubli, Nino F; Hu, Chengzhi; Grossniklaus, Ueli; Nelson, Bradley J (2018). Feeling the force: how pollen tubes deal with obstacles. New Phytologist, 220(1):187-195.
Bourgeois, Yann; Stritt, Christoph; Walser, Jean-Claude; Gordon, Sean P; Vogel, John P; Roulin, Anne C (2018). Genome-wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon. The Plant Journal, 96(2):438-451.
Das, Aditi; Christ, Bastien; Hörtensteiner, Stefan (2018). Characterization of the pheophorbide a oxygenase/phyllobilin pathway of chlorophyll breakdown in grasses. Planta, 248(4):875-892.
Simonini, Sara; Mas, Philippe J; Mas, Caroline M V S; Østergaard, Lars; Hart, Darren J (2018). Auxin sensing is a property of an unstructured domain in the Auxin Response Factor ETTIN of Arabidopsis thaliana. Scientific Reports, 8(1):13563.
Rezzoagli, Chiara; Wilson, David; Weigert, Michael; Wyder, Stefan; Kümmerli, Rolf (2018). Probing the evolutionary robustness of two repurposed drugs targeting iron uptake in Pseudomonas aeruginosa. Evolution, Medicine, and Public Health, 6:246-259.
Gruissem, Wilhelm; Keller, Beat. Auch die Schweizer Bauern sind auf Fortschritt angewiesen. In: Neue Zürcher Zeitung am Sonntag, 8 September 2018, 1.
Yang, Ping; Praz, Coraline; Li, Beibei; Singla, Jyoti; Robert, Christelle A M; Kessel, Bettina; Scheuermann, Daniela; Lüthi, Linda; Ouzunova, Milena; Erb, Matthias; Krattinger, Simon G; Keller, Beat (2018). Fungal resistance mediated by maize wall‐associated kinase Zm WAK‐RLK1 correlates with reduced benzoxazinoid content. New Phytologist, 221(2):976-987.
Perraki, Artemis; DeFalco, Thomas A; Derbyshire, Paul; Avila, Julian; Séré, David; Sklenar, Jan; Qi, Xingyun; Stransfeld, Lena; Schwessinger, Benjamin; Kadota, Yasuhiro; Macho, Alberto P; Jiang, Shushu; Couto, Daniel; Torii, Keiko U; Menke, Frank L H; Zipfel, Cyril (2018). Phosphocode-dependent functional dichotomy of a common co-receptor in plant signalling. Nature, 561:248-252.
Roth, Morgane; Florez-Rueda, Ana M; Paris, Margot; Städler, Thomas (2018). Wild tomato endosperm transcriptomes reveal common roles of genomic imprinting in both nuclear and cellular endosperm. The Plant Journal, 95(6):1084-1101.
Carrión, Víctor J; Cordovez, Viviane; Tyc, Olaf; Etalo, Desalegn W; de Bruijn, Irene; de Jager, Victor C L; Medema, Marnix H; Eberl, Leo; Raaijmakers, Jos M (2018). Involvement of Burkholderiaceae and sulfurous volatiles in disease-suppressive soils. The ISME journal, 12(9):2307-2321.
Keller, Beat; Wicker, Thomas; Krattinger, Simon G (2018). Advances in Wheat and Pathogen Genomics: Implications for Disease Control. Annual Review of Phytopathology, 56(1):67-87.
Appels, Rudi; Eversole, Kellye; Feuillet, Catherine; et al; Keller, Beat; Singh, K; Chhuneja, P; Gupta, O P; Jindal, S; Kaur, P; Malik, P; Sharma, P; Yadav, Bharat (2018). Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science, 361(6403):eaar7191.
Schöneberg, Torsten; Musa, Tomke; Forrer, Hans-Rudolf; Mascher, Fabio; Bucheli, Thomas D; Bertossa, Mario; Keller, Beat; Vogelgsang, Susanne (2018). Infection conditions of Fusarium graminearum in barley are variety specific and different from those in wheat. European Journal of Plant Pathology, 151(4):975-989.
Franck, Christina Maria; Westermann, Jens; Bürssner, Simon; Lentz, Roswitha; Lituiev, Dmytro Sergiiovych; Boisson-Dernier, Aurélien (2018). The Protein Phosphatases ATUNIS1 and ATUNIS2 Regulate Cell Wall Integrity in Tip-Growing Cells. Plant Cell, 30(8):1906-1923.
Schreier, Tina B; Cléry, Antoine; Schläfli, Michael; Galbier, Florian; Stadler, Martha; Demarsy, Emilie; Albertini, Daniele; Maier, Benjamin A; Kessler, Felix; Hörtensteiner, Stefan; Zeeman, Samuel C; Kötting, Oliver (2018). Plastidial NAD-Dependent Malate Dehydrogenase: A Moonlighting Protein Involved in Early Chloroplast Development through Its Interaction with an FtsH12-FtsHi Protease Complex. Plant Cell, 30(8):1745-1769.
Kessi, Janine; Hörtensteiner, Stefan (2018). Inhibition of bacteriochlorophyll biosynthesis in the purple phototrophic bacteria Rhodospirillumrubrum and Rhodobacter capsulatus grown in the presence of a toxic concentration of selenite. BMC Microbiology, 18(1):81.
Grujcic, Vesna; Nuy, Julia K; Salcher, Michaela M; Shabarova, Tanja; Kasalicky, Vojtech; Boenigk, Jens; Jensen, Manfred; Simek, Karel (2018). Cryptophyta as major bacterivores in freshwater summer plankton. The ISME journal, 12(7):1668-1681.
Leinweber, Anne; Weigert, Michael; Kümmerli, Rolf (2018). The bacterium Pseudomonas aeruginosa senses and gradually responds to interspecific competition for iron. Evolution, 72(7):1515-1528.
Durgud, Meriem; Gupta, Saurabh; Ivanov, Ivan; Omidbakhshfard, M Amin; Benina, Maria; Alseekh, Saleh; Staykov, Nikola; Hauenstein, Mareike; Dijkwel, Paul P; Hörtensteiner, Stefan; Toneva, Valentina; Brotman, Yariv; Fernie, Alisdair R; Mueller-Roeber, Bernd; Gechev, Tsanko S (2018). Molecular Mechanisms Preventing Senescence in Response to Prolonged Darkness in a Desiccation-Tolerant Plant. Plant Physiology, 177(3):1319-1338.
Bock, Christina; Salcher, Michaela; Jensen, Manfred; Pandey, Ram Vinay; Boenigk, Jens (2018). Synchrony of Eukaryotic and Prokaryotic Planktonic Communities in Three Seasonally Sampled Austrian Lakes. Frontiers in Microbiology, 9:1290.
Dragoš, Anna; Kiesewalter, Heiko; Martin, Marivic; Hsu, Chih-Yu; Hartmann, Raimo; Wechsler, Tobias; Eriksen, Carsten; Brix, Susanne; Drescher, Knut; Stanley-Wall, Nicola; Kümmerli, Rolf; Kovács, Ákos T (2018). Division of Labor during Biofilm Matrix Production. Current Biology, 28(12):1903-1913.e5.
Lardi, Martina; Pessi, Gabriella (2018). Functional Genomics Approaches to Studying Symbioses between Legumes and Nitrogen-Fixing Rhizobia. High-Throughput, 7(2):15.
Silva, Marisa O D; Blom, Judith F; Yankova, Yana; Villiger, Jörg; Pernthaler, Jakob (2018). Priming of microbial microcystin degradation in biomass-fed gravity driven membrane filtration biofilms. Systematic and Applied Microbiology, 41(3):221-231.
Weidmann, Lukas; Jacquat, Christiane; Oertle, Daniel (2018). Quinoa oder die Gefahren des gesunden Essens. Swiss Medical Forum, 18(18):407-408.
Tylewicz, S; Petterle, A; Marttila, S; Miskolczi, P; Azeez, A; Singh, R K; Immanen, J; Mähler, N; Hvidsten, T R; Eklund, D M; Bowman, J L; Helariutta, Y; Bhalerao, R P (2018). Photoperiodic control of seasonal growth is mediated by ABA acting on cell-cell communication. Science, 360(6385):212-215.
Hedhly, Afif; Vogler, Hannes; Eichenberger, Christof; Grossniklaus, Ueli (2018). Whole-mount Clearing and Staining of <em>Arabidopsis</em> Flower Organs and Siliques. Journal of Visualized Experiments, (134):online.
Keller, Beat; Krattinger, Simon G (2018). A new player in race-specific resistance. Nature Plants, 4(4):197-198.
McNally, Kaitlin Elyse; Menardo, Fabrizio; Lüthi, Linda; Praz, Coraline Rosalie; Müller, Marion Claudia; Kunz, Lukas; Ben-David, Roi; Chandrasekhar, Kottakota; Dinoor, Amos; Cowger, Christina; Meyers, Emily; Xue, Mingfeng; Zeng, Fangsong; Gong, Shuangjun; Yu, Dazhao; Bourras, Salim; Keller, Beat (2018). Distinct domains of the AVRPM3A2/F2 avirulence protein from wheat powdery mildew are involved in immune receptor recognition and putative effector function. New Phytologist, 218(2):681-695.
Lardi, Martina; Liu, Yilei; Giudice, Gaetano; Ahrens, Christian H; Zamboni, Nicola; Pessi, Gabriella (2018). Metabolomics and Transcriptomics Identify Multiple Downstream Targets of Paraburkholderia phymatum σ54 During Symbiosis with Phaseolus vulgaris. International Journal of Molecular Sciences, 19(4):1049.
Koller, Teresa; Brunner, Susanne; Herren, Gerhard; Hurni, Severine; Keller, Beat (2018). Pyramiding of transgenic Pm3 alleles in wheat results in improved powdery mildew resistance in the field. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 131(4):861-871.
Kliver, Sergei; Rayko, Mike; Komissarov, Alexey; Bakin, Evgeny; Zhernakova, Daria; Prasad, Kasavajhala; Rushworth, Catherine; Baskar, R; Smetanin, Dmitry; Schmutz, Jeremy; Rokhsar, Daniel S; Mitchell-Olds, Thomas; Grossniklaus, Ueli; Brukhin, Vladimir (2018). Assembly of the Boechera retrofracta Genome and Evolutionary Analysis of Apomixis-Associated Genes. Genes, 9(4):185.
Losasso, Carmen; Eckert, Ester M; Mastrorilli, Eleonora; Villiger, Jorg; Mancin, Marzia; Patuzzi, Ilaria; Di Cesare, Andrea; Cibin, Veronica; Barrucci, Federica; Pernthaler, Jakob; Corno, Gianluca; Ricci, Antonia (2018). Assessing the Influence of Vegan, Vegetarian and Omnivore Oriented Westernized Dietary Styles on Human Gut Microbiota: A Cross Sectional Study. Frontiers in Microbiology:9:317.
Simonini, Sara; Stephenson, Pauline; Østergaard, Lars (2018). A molecular framework controlling style morphology in Brassicaceae. Development, 145(5):dev158105.
Zhang, Qianqian; van Wijk, Ringo; Shahbaz, Muhammad; Roels, Wendy; van Schooten, Bas; Vermeer, Joop E M; Zarza, Xavier; Guardia, Aisha; Scuffi, Denise; García-Mata, Carlos; Laha, Debabrata; Williams, Phoebe; Willems, Leo A J; Ligterink, Wilco; Hoffmann-Benning, Susanne; Gillaspy, Glenda; Schaaf, Gabriel; Haring, Michel A; Laxalt, Ana M; Munnik, Teun (2018). Arabidopsis Phospholipase C3 is Involved in Lateral Root Initiation and ABA Responses in Seed Germination and Stomatal Closure. Plant & Cell Physiology, 59(3):469-486.
Krempaska, Natalia; Horňák, Karel; Pernthaler, Jakob (2018). Spatiotemporal distribution and microbial assimilation of polyamines in a mesotrophic lake. Limnology and Oceanography, 63(2):816-832.
Sapala, Aleksandra; Runions, Adam; Routier-Kierzkowska, Anne-Lise; Das Gupta, Mainak; Hong, Lilan; Hofhuis, Hugo; Verger, Stéphane; Mosca, Gabriella; Li, Chun-Biu; Hay, Angela; Hamant, Olivier; Roeder, Adrienne H K; Tsiantis, Miltos; Prusinkiewicz, Przemyslaw; Smith, Richard S (2018). Why plants make puzzle cells, and how their shape emerges. eLife, 7:e32794.
de Brito Francisco, Rita; Martinoia, Enrico (2018). The Vacuolar Transportome of Plant Specialized Metabolites. Plant & Cell Physiology, 59(7):1326-1336.
Praz, Coraline R; Menardo, Fabrizio; Robinson, Mark D; Müller, Marion C; Wicker, Thomas; Bourras, Salim; Keller, Beat (2018). Non-parent of Origin Expression of Numerous Effector Genes Indicates a Role of Gene Regulation in Host Adaption of the Hybrid Triticale Powdery Mildew Pathogen. Frontiers in Plant Science, 9:49.
Roth, Morgane; Florez-Rueda, Ana M; Griesser, Stephan; Paris, Margot; Städler, Thomas (2018). Incidence and developmental timing of endosperm failure in post-zygotic isolation between wild tomato lineages. Annals of Botany, 121(1):107-118.
Crüsemann, Max; Reher, Raphael; Schamari, Isabella; Brachmann, Alexander O; Ohbayashi, Tsubasa; Kuschak, Markus; Malfacini, Davide; Seidinger, Alexander; Pinto-Carbó, Marta; Richarz, René; Reuter, Tatjana; Kehraus, Stefan; Hallab, Asis; Attwood, Misty; Schiöth, Helgi B; Mergaert, Peter; Kikuchi, Yoshitomo; Schäberle, Till F; Kostenis, Evi; Wenzel, Daniela; Müller, Christa E; Piel, Jörn; Carlier, Aurélien; Eberl, Leo; König, Gabriele M (2018). Heterologous Expression, Biosynthetic Studies, and Ecological Function of the Selective Gq-Signaling Inhibitor FR900359. Angewandte Chemie Internationale Edition, 57(3):836-840.
Keller, Beat; Sánchez-Martín, Javier; Bourras, Salim (2018). Diseases affecting wheat and barley: powdery mildew. In: Burleigh, Rob; Dodds, Francis. Integrated disease management of wheat and barley. Cambridge: Burleigh Dodds Science Publishing, 4.
Mosca, Gabriella; Adibi, Milad; Strauss, Soeren; Runions, Adam; Sapala, Aleksandra; Smith, Richard S (2018). Modeling Plant Tissue Growth and Cell Division. In: Mosca, Gabriella. Mathematical Modelling in Plant Biology. Switzerland: Springer, 107-138.
Schöneberg, Torsten; Jenny, Eveline; Wettstein, Felix E; Bucheli, Thomas D; Mascher, Fabio; Bertossa, Mario; Musa, Tomke; Seifert, Keith; Gräfenhan, Tom; Keller, Beat; Vogelgsang, Susanne (2018). Occurrence of Fusarium species and mycotoxins in Swiss oats—Impact of cropping factors. European Journal of Agronomy, 92:123-132.
Stritt, Christoph; Gordon, Sean P; Wicker, Thomas; Vogel, John P; Roulin, Anne C (2018). Recent activity in expanding populations and purifying selection have shaped transposable element landscapes across natural accessions of the mediterranean grass brachypodium distachyon. Genome Biology and Evolution, 10(1):304-318.
Thieme, Michael; Bucher, Etienne (2018). Transposable Elements as Tool for Crop Improvement. In: Gallusci, Philippe; Bucher, Etienne; Mirouze, Marie. View on ScienceDirect Plant Epigenetics Coming of Age for Breeding Applications. Amsterdam: Elsevier, 165-202.
Sasse, Joelle; Martinoia, Enrico; Northen, Trent (2018). Feed Your Friends: Do Plant Exudates Shape the Root Microbiome? Trends in Plant Science, 23(1):25-41.
Boni, Rainer; Chauhan, Harsh; Hensel, Goetz; Roulin, Anne; Sucher, Justine; Kumlehn, Jochen; Brunner, Susanne; Krattinger, Simon G; Keller, Beat (2018). Pathogen-inducible Ta-Lr34res expression in heterologous barley confers disease resistance without negative pleiotropic effects. Plant Biotechnology Journal, 16(1):245-253.
Wang, Jinlong; Grubb, Lauren E; Wang, Jiayu; Liang, Xiangxiu; Li, Lin; Gao, Chulei; Ma, Miaomiao; Feng, Feng; Li, Meng; Li, Lei; Zhang, Xiaojuan; Yu, Feifei; Xie, Qi; Chen, She; Zipfel, Cyril; Monaghan, Jacqueline; Zhou, Jian-Min (2018). A Regulatory Module Controlling Homeostasis of a Plant Immune Kinase. Molecular Cell, 69(3):493-504.e6.
Tsuchimatsu, Takashi; Kakui, Hiroyuki; Yamazaki, Misako; Marona, Cindy; Tsutsui, Hiroki; Hedhly, Afif; Meng, Dazhe; Sato, Yutaka; Stadler, Thomas; Grossniklaus, Ueli; Kanaoka, Masahiro M; Lenhard, Michael; Nordborg, Magnus; Shimizu, Kentaro K (2018). Adaptive Reduction of Male Gamete Number in a Selfing Species. bioRxiv 272757, Cold Spring Harbor Laboratory.
Jacquat, Christiane; Della Casa, Philippe (2018). Airolo-Madrano (TI): Palaeoenvironment and subsistence strategies of a hilltop settlement in the southern Swiss Alps during the Bronze and Iron Ages. Quaternary International: The Journal of the International Union for Quaternary Research, 484:32-43.
Jacquat, Christiane (2018). Airolo-Madrano “In Grop”: Archaeobotanical Analysis – Palaeoenvironment and Mountain Economies in the Bronze and Iron Ages. In: Della Casa, Philippe. The Leventina Prehistoric Landscape. Switzerland: Chronos Verlag, 171-189.
Ziemann, Sebastian; van der Linde, Karina; Lahrmann, Urs; Acar, Beyda; Kaschani, Farnusch; Colby, Tom; Kaiser, Markus; Ding, Yezhang; Schmelz, Eric; Huffaker, Alisa; Holton, Nicholas; Zipfel, Cyril; Doehlemann, Gunther (2018). An apoplastic peptide activates salicylic acid signalling in maize. Nature Plants, 4:172-180.
Smakowska-Luzan, Elwira; Mott, G Adam; Parys, Katarzyna; Stegmann, Martin; Howton, Timothy C; Layeghifard, Mehdi; Neuhold, Jana; Lehner, Anita; Kong, Jixiang; Grünwald, Karin; Weinberger, Natascha; Satbhai, Santosh B; Mayer, Dominik; Busch, Wolfgang; Madalinski, Mathias; Stolt-Bergner, Peggy; Provart, Nicholas J; Mukhtar, M Shahid; Zipfel, Cyril; Desveaux, Darrell; Guttman, David S; Belkhadir, Youssef (2018). An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Nature, 553:342-346.
Šimek, Karel; Grujčić, Vesna; Hahn, Martin W; Horňák, Karel; Jezberová, Jitka; Kasalický, Vojtěch; Nedoma, Jiří; Salcher, Michaela M; Shabarova, Tanja (2018). Bacterial prey food characteristics modulate community growth response of freshwater bacterivorous flagellates. Limnology and Oceanography, 63(1):484-502.
Das, Aditi; Guyer, Luzia; Hörtensteiner, Stefan (2018). Chlorophyll and Chlorophyll Catabolite Analysis by HPLC. In: Guo, Yongfeng. Plant Senescence : Methods and Protocols. New York: Springer, 223-235.
Peter, Nicole Noemi Anne. Chlorophyll breakdown : regulation of pheophorbide a oxygenase. 2018, University of Zurich, Faculty of Science.
Ma, Xin; Keller, Beat; McDonald, Bruce A; Palma-Guerrero, Javier; Wicker, Thomas (2018). Comparative transcriptomics reveals how wheat responds to infection by Zymoseptoria tritici. Molecular Plant-Microbe Interactions, 31(4):420-431.
Thind, Anupriya Kaur. Cultivar-specific long-range chromosome assembly permits rapid gene isolation and high-quality comparative analysis in hexaploid wheat. 2018, University of Zurich, Faculty of Science.
Roth, Morgane; Florez-Rueda, Ana M; Staedler, Thomas (2018). Differences in effective ploidy as drivers of genome-wide endosperm expression asymmetries and seed failure in wild tomato hybrids. bioRxiv 459925, Cold Spring Harbor Laboratory.
Säle, Verena. Genetic and functional diversity of arbuscular mycorrhizal fungi from agricultural soils. 2018, University of Zurich, Faculty of Science.
Gétaz, Michael. Genomic investigations of the strawberry quarantine bacterial pathogen Xanthomonas fragariae for a better integrative pest management. 2018, University of Zurich, Faculty of Science.
Liu, Yilei; Pessi, Gabriella; Riedel, Katharina; Eberl, Leo (2018). Identification of AHL- and BDSF-Controlled Proteins in Burkholderia cenocepacia by Proteomics. Methods in Molecular Biology, 1673:193-202.
Rövekamp, Moritz. Insights from Marchantia polymorpha into the evolutionary development of land plant sexual reproduction. 2018, University of Zurich, Faculty of Science.
Schubert, Jasmin Anita. Investigating the mechanism and role of linker histone dynamics during plant reproduction. 2018, University of Zurich, Faculty of Science.
Richter, Anja M; Fazli, Mustafa; Schmid, Nadine; Shilling, Rebecca; Suppiger, Angela; Givskov, Michael; Eberl, Leo; Tolker-Nielsen, Tim (2018). Key Players and Individualists of Cyclic-di-GMP Signaling in Burkholderia cenocepacia. Frontiers in Microbiology, 9:3286.
Ndinyanka Fabrice, Tohnyui; Vogler, Hannes; Draeger, Christian; Munglani, Gautam; Gupta, Shibu; Herger, Aline Galatea; Knox, Paul; Grossniklaus, Ueli; Ringli, Christoph (2018). LRX Proteins play a crucial role in pollen grain and pollen tube cell wall development. Plant Physiology, 176(3):1981-1992.
Pinto Carbó, Marta Adriana. Leaf nodule symbiosis in the genomic era : new insights into bacterial symbiont evolution, function and transmission. 2018, University of Zurich, Faculty of Science.
Fabbri, Carlotta. Microbial metal mobilization from metal-containing solids : a study of Penicillium, Halothiobacillus and Pseudomonas. 2018, University of Zurich, Faculty of Science.
Deppe, Johannes. Physiological characterization of the wheat ABC transporter Lr34. 2018, University of Zurich, Faculty of Science.
Bender, Kyle W; Zipfel, Cyril (2018). Plant G-protein activation: connecting to plant receptor kinases. Cell Research, 28(7):697-698.
Perraki, Artemis; Gronnier, Julien; Gouguet, Paul; Boudsocq, Marie; Deroubaix, Anne-Flore; Simon, Vincent; German-Retana, Sylvie; Legrand, Anthony; Habenstein, Birgit; Zipfel, Cyril; Bayer, Emmanuelle; Mongrand, Sébastien; Germain, Véronique (2018). REM1.3's phospho-status defines its plasma membrane nanodomain organization and activity in restricting PVX cell-to-cell movement. PLoS Pathogens, 14(11):e1007378.
da Silva, Ana Marisa Oliveira. Removal of microcystins by mature biofilms during water filtration. 2018, University of Zurich, Faculty of Science.
Nigro, Arianna. Sugar metabolism in the guard cells of Arabidopsis thaliana. 2018, University of Zurich, Faculty of Science.
Engelsdorf, Timo; Gigli-Bisceglia, Nora; Veerabagu, Manikandan; McKenna, Joseph F; Vaahtera, Lauri; Augstein, Frauke; Van der Does, Dieuwertje; Zipfel, Cyril; Hamann, Thorsten (2018). The plant cell wall integrity maintenance and immune signaling systems cooperate to control stress responses inArabidopsis thaliana. Science Signaling, 11(536):eaao3070.
Leinweber, Anne. The struggle for iron: how it affects cooperation, competition and biodiversity in bacterial communities. 2018, University of Zurich, Faculty of Science.
Sucher, J; Menardo, F; Praz, C R; Boni, R; Krattinger, S G; Keller, B (2018). Transcriptional profiling reveals no response of fungal pathogens to the durable, quantitative Lr34 disease resistance gene of wheat. Plant Biology, 67(4):792-798.
Fabrice, Tohnyui Ndinyanka; Cherkezyan, Lusik; Ringli, Christoph; Baroux, Célia (2018). Transmission electron microscopy imaging to analyze chromatin density distribution at the nanoscale level. In: Bemer, Marian; Baroux, Célia. Plant Chromatin Dynamics : Methods and Protocols. New York, NY: Springer, 633-651.
Müller, Thomas; Schierscher-Viret, Beate; Fossati, Dario; Brabant, Cécile; Schori, Arnold; Keller, Beat; Krattinger, Simon G (2018). Unlocking the diversity of genebanks: whole-genome marker analysis of Swiss bread wheat and spelt. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 131(2):407-416.
Lardi, Martina. Unravelling the molecular basis of the nitrogen-fixing symbiosis between legumes and beta-rhizobia. 2018, University of Zurich, Faculty of Science.
Liu, Qinsong; Vain, Thomas; Viotti, Corrado; Doyle, Siamsa M; Tarkowská, Danuše; Novák, Ondřej; Zipfel, Cyril; Sitbon, Folke; Robert, Stéphanie; Hofius, Daniel (2018). Vacuole Integrity Maintained by DUF300 Proteins Is Required for Brassinosteroid Signaling Regulation. Molecular Plant, 11(4):553-567.
Stegmann, Martin; Zipfel, Cyril (2017). Complex regulation of plant sex by peptides. Science, 358(6370):1544-1545.
Wicker, Thomas; Schulman, Alan H; Tanskanen, Jaakko; Spannagl, Manuel; Twardziok, Sven; Mascher, Martin; Springer, Nathan M; Li, Qing; Waugh, Robbie; Li, Chengdao; Zhang, Guoping; Stein, Nils; Mayer, Klaus F. X; Gundlach, Heidrun (2017). The repetitive landscape of the 5100 Mbp barley genome. Mobile DNA:8:22.
Gordon, Sean P; Contreras-Moreira, Bruno; Woods, Daniel P; Des Marais, David L; Burgess, Diane; Shu, Shengqiang; Stritt, Christoph; Roulin, Anne C; Schackwitz, Wendy; Tyler, Ludmila; Martin, Joel; Lipzen, Anna; Dochy, Niklas; Phillips, Jeremy; Barry, Kerrie; Geuten, Koen; Budak, Hikmet; Juenger, Thomas E; Amasino, Richard; Caicedo, Ana L; Goodstein, David; Davidson, Patrick; Mur, Luis A J; Figueroa, Melania; Freeling, Michael; Catalan, Pilar; Vogel, John P (2017). Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure. Nature Communications, 8(1):2184.
Lardi, Martina; Liu, Yilei; Purtschert, Gabriela; Bolzan de Campos, Samanta; Pessi, Gabriella (2017). Transcriptome Analysis of Paraburkholderia phymatum under Nitrogen Starvation and during Symbiosis with Phaseolus Vulgaris. Genes, 8(12):E389.
Praz, Coraline R; Bourras, Salim; Zeng, Fansong; Sánchez-Martín, Javier; Menardo, Fabrizio; Xue, Minfeng; Yang, Lijun; Roffler, Stefan; Böni, Rainer; Herren, Gerard; McNally, Kaitlin E; Ben-David, Roi; Parlange, Francis; Oberhaensli, Simone; Flückiger, Simon; Schäfer, Luisa K; Wicker, Thomas; Yu, Dazhao; Keller, Beat (2017). AvrPm2 encodes an RNase-like avirulence effector which is conserved in the two different specialized forms of wheat and rye powdery mildew fungus. New Phytologist, 213(3):1301-1314.
Christ, Bastien; Hochstrasser, Ramon; Guyer, Luzia; Francisco, Rita; Aubry, Sylvain; Hörtensteiner, Stefan; Weng, Jing-Ke (2017). Non-specific activities of the major herbicide-resistance gene BAR. Nature Plants, 3(12):937-945.
Luo, Ming-Cheng; Gu, Yong Q; et al; Wicker, Thomas; Dvořák, Jan (2017). Genome sequence of the progenitor of the wheat D genome Aegilops tauschii. Nature:498-502.
Higgins, Steven; Sanchez-Contreras, Maria; Gualdi, Stefano; Pinto-Carbó, Marta; Carlier, Aurélien; Eberl, Leo (2017). The Essential Genome of Burkholderia cenocepacia H111. Journal of Bacteriology, 199(22):e00260-17.
Ruinelli, Michela. Genomic Investigations of Members of the Pseudomonas syringae Species Complex Associated with Prunus spp. and Kiwifruit. 2017, University of Zurich, Faculty of Science.
Menardo, Fabrizio; Praz, Coraline R; Wicker, Thomas; Keller, Beat (2017). Rapid turnover of effectors in grass powdery mildew (Blumeria graminis). BMC Evolutionary Biology, 17(1):223.
Ndinyanka Fabrice, Tohnyui; Kaech, Andres; Barmettler, Gery; Eichenberger, Christof; Knox, J Paul; Grossniklaus, Ueli; Ringli, Christoph (2017). Efficient preparation of Arabidopsis pollen tubes for ultrastructural analysis using chemical and cryo-fixation. BMC Plant Biology, 17:176.
Park, Jiyoung; Lee, Youngsook; Martinoia, Enrico; Geisler, Markus (2017). Plant hormone transporters: what we know and what we would like to know. BMC Biology, 15(1):93.
Yankova, Yana; Neuenschwander, Stefan; Köster, Oliver; Posch, Thomas (2017). Abrupt stop of deep water turnover with lake warming: Drastic consequences for algal primary producers. Scientific Reports, 7(1):13770.
Bowman, John L; Kohchi, Takayuki; Yamato, Katsuyuki T; Jenkins, Jerry; Shu, Shengqiang; Ishizaki, Kimitsune; Yamaoka, Shohei; Nishihama, Ryuichi; Nakamura, Yasukazu; Berger, Frédéric; Adam, Catherine; Aki, Shiori Sugamata; Althoff, Felix; Araki, Takashi; Arteaga-Vazquez, Mario A; Balasubrmanian, Sureshkumar; Barry, Kerrie; Bauer, Diane; Boehm, Christian R; Briginshaw, Liam; Caballero-Perez, Juan; Catarino, Bruno; Chen, Feng; Chiyoda, Shota; Chovatia, Mansi; Davies, Kevin M; Delmans, Mihails; Demura, Taku; Dierschke, Tom; Dolan, Liam; Rövekamp, Moritz; Schmid, Marc W; et al (2017). Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome. Cell, 171(2):287-304.
Yang, Ping; Herren, Gerhard; Krattinger, Simon; Keller, Beat (2017). Large-scale maize seedling infection with exserohilum turcicum in the greenhouse. Bio-protocol, 7(19):e2567.
Gujas, Bojan; Cruz, Tiago M D; Kastanaki, Elizabeth; Vermeer, Joop E M; Munnik, Teun; Rodriguez-Villalon, Antia (2017). Perturbing phosphoinositide homeostasis oppositely affects vascular differentiation in Arabidopsis thaliana roots. Development, 144(19):3578-3589.
Eisenach, Cornelia; Baetz, Ulrike; Huck, Nicola V; Zhang, Jingbo; De Angeli, Alexis; Beckers, Gerold J M; Martinoia, Enrico (2017). ABA-induced stomatal closure involves ALMT4, a phosphorylation-dependent vacuolar anion channel of arabidopsis. Plant Cell, 29(10):2552-2569.
D’Ambrosio, Juan Martín; Couto, Daniel; Fabro, Georgina; Scuffi, Denise; Lamattina, Lorenzo; Munnik, Teun; Andersson, Mats X; Álvarez, María E; Zipfel, Cyril; Laxalt, Ana M (2017). Phospholipase C2 Affects MAMP-Triggered Immunity by Modulating ROS Production. Plant Physiology, 175(2):970-981.
Granato, Elisa T; Kümmerli, Rolf (2017). The path to re-evolve cooperation is constrained in Pseudomonas aeruginosa. BMC Evolutionary Biology, 17(1):214.
Stoeckle, Dorothee; Thellmann, Martha; Vermeer, Joop E M (2017). Breakout-lateral root emergence in Arabidopsis thaliana. Current Opinion in Plant Biology, 41:67-72.
Pitsch, Gianna; Adamec, Lubomír; Dirren, Sebastian; Nitsche, Frank; Šimek, Karel; Sirová, Dagmara; Posch, Thomas (2017). The green tetrahymena utriculariae n. sp. (ciliophora, oligohymenophorea) with its endosymbiotic algae (micractinium sp.), living in traps of a carnivorous aquatic plant. Journal of Eukaryotic Microbiology, 64(3):322-335.
Boschi, Federico; Schvartzman, Claudia; Murchio, Sara; Ferreira, Virginia; Siri, Maria I; Galván, Guillermo A; Smoker, Matthew; Stransfeld, Lena; Zipfel, Cyril; Vilaró, Francisco L; Dalla-Rizza, Marco (2017). Enhanced Bacterial Wilt Resistance in Potato Through Expression of Arabidopsis EFR and Introgression of Quantitative Resistance from Solanum commersonii. Frontiers in Plant Science, 8:1642.
Schöneberg, Torsten. Occurrence and Epidemiology of Fusarium Species in Barley and Oats. 2017, University of Zurich, Faculty of Science.
Šimek, Karel; Pitsch, Gianna; Salcher, Michaela M; Sirová, Dagmara; Shabarova, Tanja; Adamec, Lubomír; Posch, Thomas (2017). Ecological Traits of the Algae-Bearing Tetrahymena utriculariae (Ciliophora) from Traps of the Aquatic Carnivorous Plant Utricularia reflexa. Journal of Eukaryotic Microbiology, 64(3):336-348.
Guyer, Luzia; Salinger, Kathrin; Krügel, Undine; Hörtensteiner, Stefan (2017). Catalytic and structural properties of pheophytinase, the phytol esterase involved in chlorophyll breakdown. Journal of Experimental Botany, 69:879-889.
Granato, Elisa. Evolution of Cooperation and Virulence in an Opportunistic Pathogen. 2017, University of Zurich, Faculty of Science.
Kuai, Benke; Chen, Junyi; Hörtensteiner, Stefan (2017). The biochemistry and molecular biology of chlorophyll breakdown. Journal of Experimental Botany, 69(4):751-767.
Toyofuku, Masanori; Cárcamo-Oyarce, Gerardo; Yamamoto, Tatsuya; Eisenstein, Fabian; Hsiao, Chien-Chi; Kurosawa, Masaharu; Gademann, Karl; Pilhofer, Martin; Nomura, Nobuhiko; Eberl, Leo (2017). Prophage-triggered membrane vesicle formation through peptidoglycan damage in Bacillus subtilis. Nature Communications, 8:481.
Butaitė, Elena; Baumgartner, Michael; Wyder, Stefan; Kümmerli, Rolf (2017). Siderophore cheating and cheating resistance shape competition for iron in soil and freshwater Pseudomonas communities. Nature Communications, 8(1):414.
Imkampe, Julia; Halter, Thierry; Huang, Shuhua; Schulze, Sarina; Mazzotta, Sara; Schmidt, Nikola; Manstretta, Raffaele; Postel, Sandra; Wierzba, Michael; Yang, Yong; van Dongen, Walter M A M; Stahl, Mark; Zipfel, Cyril; Goshe, Michael B; Clouse, Steven; de Vries, Sacco C; Tax, Frans; Wang, Xiaofeng; Kemmerling, Birgit (2017). The Arabidopsis Leucine-Rich Repeat Receptor Kinase BIR3 Negatively Regulates BAK1 Receptor Complex Formation and Stabilizes BAK1. Plant Cell, 29(9):2285-2303.
Thind, Anupriya K; Wicker, Thomas; Krattinger, Simon G (2017). Rapid identification of rust resistance genes through cultivar-specific de novo chromosome assemblies. In: Periyannan, Sam. Wheat Rust Diseases. New York, NY: Springer, 245-255.
Do, Thanh Ha Thi; Martinoia, Enrico; Lee, Youngsook (2017). Functions of ABC transporters in plant growth and development. Current Opinion in Plant Biology, 41:32-38.
Boni, Rainer. Functional Characterization of the Wheat Disease Resistance Gene Lr34 in Heterologous Barley. 2017, University of Zurich, Faculty of Science.
Boutrot, Freddy; Zipfel, Cyril (2017). Function, Discovery, and Exploitation of Plant Pattern Recognition Receptors for Broad-Spectrum Disease Resistance. Annual Review of Phytopathology, 55:257-286.
Singh, Vijayata; Perraki, Artemis; Kim, Sang Y; Shrivastava, Stuti; Lee, Jae H; Zhao, Youfu; Schwessinger, Benjamin; Oh, Man-Ho; Marshall-Colon, Amy; Zipfel, Cyril; Huber, Steven C (2017). Tyrosine-610 in the Receptor Kinase BAK1 Does Not Play a Major Role in Brassinosteroid Signaling or Innate Immunity. Frontiers in Plant Science, 8:1273.
Dirren, Sebastian; Pitsch, Gianna; Silva, Marisa O D; Posch, Thomas (2017). Grazing of Nuclearia thermophila and Nuclearia delicatula (Nucleariidae, Opisthokonta) on the toxic cyanobacterium Planktothrix rubescens. European Journal of Protistology, 60:87-101.
Simonini, Sara; Bencivenga, Stefano; Trick, Martin; Østergaard, Lars (2017). Auxin-Induced Modulation of ETTIN Activity Orchestrates Gene Expression in Arabidopsis. Plant Cell, 29(8):1864-1882.
Fazli, Mustafa; Rybtke, Morten; Steiner, Elisabeth; Weidel, Elisabeth; Berthelsen, Jens; Groizeleau, Julie; Bin, Wu; Zhi, Boo Zhao; Yaming, Zhang; Kaever, Volkhard; Givskov, Michael; Hartmann, Rolf W; Eberl, Leo; Tolker-Nielsen, Tim (2017). Regulation of Burkholderia cenocepacia biofilm formation by RpoN and the c-di-GMP effector BerB. MicrobiologyOpen, 6(4):e00480.
Thalmann, Matthias. The Function and Regulation of Starch Degradation during Plant Responses to Abiotic Stress. 2017, University of Zurich, Faculty of Science.
Khare, Deepa; Choi, Hyunju; Huh, Sung Un; Bassin, Barbara; Kim, Jeongsik; Martinoia, Enrico; Sohn, Kee Hoon; Paek, Kyung-Hee; Lee, Youngsook (2017). Arabidopsis ABCG34 contributes to defense against necrotrophic pathogens by mediating the secretion of camalexin. Proceedings of the National Academy of Sciences of the United States of America, 114(28):E5712-E5720.
Vermeer, Joop E M; van Wijk, Ringo; Goedhart, Joachim; Geldner, Niko; Chory, Joanne; Gadella, Theodorus W J; Munnik, Teun (2017). In Vivo Imaging of Diacylglycerol at the Cytoplasmic Leaflet of Plant Membranes. Plant & Cell Physiology, 58(7):1196-1207.
Agnoli, Kirsty; Freitag, Roman; Gomes, Margarida C; Jenul, Christian; Suppiger, Angela; Mannweiler, Olga; Frauenknecht, Carmen; Janser, Daniel; Vergunst, Annette C; Eberl, Leo (2017). Use of Synthetic Hybrid Strains To Determine the Role of Replicon 3 in Virulence of the Burkholderia cepacia Complex. Applied and Environmental Microbiology, 83(13):e00461-17.
Weigert, Michael; Kümmerli, Rolf (2017). The physical boundaries of public goods cooperation between surface-attached bacterial cells. Proceedings of the Royal Society of London, Series B: Biological Sciences, 284(1858):20170631.
Eversole, Kellye; Rogers, Jane; Keller, Beat; Appels, Rudi; Feuillet, Catherine (2017). Sequencing and assembly of the wheat genome. In: Langridge, Peter. Achieving sustainable cultivation of wheat Volume 1: Breeding, quality traits, pests and diseases. Cambridge, UK: Burleigh Dodds Science Publishing, 25-52.
Ezer, Daphne; Jung, Jae-Hoon; Lan, Hui; Biswas, Surojit; Gregoire, Laura; Box, Mathew S; Charoensawan, Varodom; Cortijo, Sandra; Lai, Xuelei; Stöckle, Dorothee; Zubieta, Chloe; Jaeger, Katja E; Wigge, Philip A (2017). The evening complex coordinates environmental and endogenous signals in Arabidopsis. Nature Plants, 3:17087.
Yankova, Yana. Effects of Lake Warming on Cyanobacterial and Algal Bloom Dynamics. 2017, University of Zurich, Faculty of Science.
Van der Does, Dieuwertje; Boutrot, Freddy; Engelsdorf, Timo; Rhodes, Jack; McKenna, Joseph F; Vernhettes, Samantha; Koevoets, Iko; Tintor, Nico; Veerabagu, Manikandan; Miedes, Eva; Segonzac, Cécile; Roux, Milena; Breda, Alice S; Hardtke, Christian S; Molina, Antonio; Rep, Martijn; Testerink, Christa; Mouille, Grégory; Höfte, Herman; Hamann, Thorsten; Zipfel, Cyril (2017). The Arabidopsis leucine-rich repeat receptor kinase MIK2/LRR-KISS connects cell wall integrity sensing, root growth and response to abiotic and bioticstresses. PLoS Genetics, 13(6):e1006832.
Baumgartner, Michael; Roffler, Stefan; Wicker, Thomas; Pernthaler, Jakob (2017). Letting go: bacterial genome reduction solves the dilemma of adapting to predation mortality in a substrate-restricted environment. The ISME journal, 11(10):2258-2266.
Hu, Chengzhi; Zhang, Qi; Meyer, Tobias; Vogler, Hannes; Burri, Jan T; Shamsudhin, Naveen; Grossniklaus, Ueli; Nelson, Bradley J (2017). In vivo tracking and measurement of pollen tube vesicle motion. In: 2017 IEEE International Conference on Robotics and Automation (ICRA), Singapore, 29 May 2017 - 3 June 2017. IEEE, 3575-3580.
Kang, Joohyun; Lee, Youngsook; Sakakibara, Hitoshi; Martinoia, Enrico (2017). Cytokinin transporters: GO and STOP in signaling. Trends in Plant Science, 22(6):455-461.
Toyofuku, Masanori; Morinaga, Kana; Hashimoto, Yohei; Uhl, Jenny; Shimamura, Hiroko; Inaba, Hideki; Schmitt-Kopplin, Philippe; Eberl, Leo; Nomura, Nobuhiko (2017). Membrane vesicle-mediated bacterial communication. The ISME journal, 11(6):1504-1509.
Santelia, Diana; Lunn, John E (2017). Transitory starch metabolism in guard cells: unique features for a unique function. Plant Physiology, 174(2):539-549.
Ndinyanka Fabrice, Tohnyui. An Integrated Systems Understanding of the Dynamic Interplay between Plant Cell Growth and Pollen Tube Cell Wall Development. 2017, University of Zurich, Faculty of Science.
Nadal, Marina; Sawers, Ruairidh; Naseem, Shamoon; Bassin, Barbara; Kulicke, Corinna; Sharman, Abigail; An, Gynheung; An, Kyungsook; Ahern, Kevin R; Romag, Amanda; Brutnell, Thomas P; Gutjahr, Caroline; Geldner, Niko; Roux, Christophe; Martinoia, Enrico; Konopka, James B; Paszkowski, Uta (2017). An N-acetylglucosamine transporter required for arbuscular mycorrhizal symbioses in rice and maize. Nature Plants, 3:17073.
Pernthaler, Jakob (2017). Competition and niche separation of pelagic bacteria in freshwater habitats. Environmental Microbiology, 19(6):2133-2150.
Thind, Anupriya Kaur; Wicker, Thomas; Šimková, Hana; Fossati, Dario; Moullet, Odile; Brabant, Cécile; Vrána, Jan; Doležel, Jaroslav; Krattinger, Simon G (2017). Rapid cloning of genes in hexaploid wheat using cultivar-specific long-range chromosome assembly. Nature Biotechnology, 35(8):793-796.
Nguyen, Chi Tam; Martinoia, Enrico; Farmer, Edward E (2017). Emerging jasmonate transporters. Molecular Plant, 10(5):659-661.
Schmid, Nadine; Suppiger, Angela; Steiner, Elisabeth; Pessi, Gabriella; Kaever, Volkhard; Fazli, Mustafa; Tolker-Nielsen, Tim; Jenal, Urs; Eberl, Leo (2017). High intracellular c-di-GMP levels antagonize quorum sensing and virulence gene expression in Burkholderia cenocepacia H111. Microbiology, 163(5):754-764.
Thalmann, Matthias; Santelia, Diana (2017). Starch as a determinant of plant fitness under abiotic stress. New Phytologist, 214(3):943-951.
Mascher, Martin; Gundlach, Heidrun; et al; Wicker, Thomas; Stein, Nils (2017). A chromosome conformation capture ordered sequence of the barley genome. Nature, 544(7651):427-433.
Keller, Beat; Krattinger, Simon G (2017). Plant science: Genomic compartments in barley. Nature, 544(7651):424-425.
Schnippenkoetter, Wendelin; Lo, Clive; Liu, Guoquan; Dibley, Katherine; Chan, Wai Lung; White, Jodie; Milne, Ricky; Zwart, Alexander; Kwong, Eunjung; Keller, Beat; Godwin, Ian; Krattinger, Simon G; Lagudah, Evans (2017). The wheat Lr34 multipathogen resistance gene confers resistance to anthracnose and rust in sorghum. Plant Biotechnology Journal, 15(11):1387-1396.
Mendy, Badou; Wang’ombe, Mary Wanjiku; Radakovic, Zoran S; Holbein, Julia; Ilyas, Muhammad; Chopra, Divykriti; Holton, Nick; Zipfel, Cyril; Grundler, Florian M W; Siddique, Shahid (2017). Arabidopsis leucine-rich repeat receptor–like kinase NILR1 is required for induction of innate immunity to parasitic nematodes. PLoS Pathogens, 13(4):e1006284.
Bucher, Rahel; Veyel, Daniel; Willmitzer, Lothar; Krattinger, Simon G; Keller, Beat; Bigler, Laurent (2017). Combined GC- and UHPLC-HR-MS based metabolomics to analyze durable anti-fungal resistance processes in cereals. CHIMIA International Journal for Chemistry, 71(4):156-159.
Souza, Clarice de Azevedo; Li, Shundai; Lin, Andrew Z; Boutrot, Freddy; Grossmann, Guido; Zipfel, Cyril; Somerville, Shauna C (2017). Cellulose-Derived Oligomers Act as Damage-Associated Molecular Patterns and Trigger Defense-Like Responses. Plant Physiology, 173(4):2383-2398.
Sucher, Justine; Boni, Rainer; Yang, Ping; Rogowsky, Peter; Büchner, Heike; Kastner, Christine; Kumlehn, Jochen; Krattinger, Simon G; Keller, Beat (2017). The durable wheat disease resistance gene Lr34 confers common rust and northern corn leaf blight resistance in maize. Plant Biotechnology Journal, 15(4):489-496.
Feehan, Joanna M; Scheibel, Katherine E; Bourras, Salim; Underwood, William; Keller, Beat; Somerville, Shauna C (2017). Purification of high molecular weight genomic DNA from powdery mildew for long-read sequencing. Journal of Visualized Experiments, (121):online.
Imperiali, Nicola; Dennert, Francesca; Schneider, Jana; Laessle, Titouan; Velatta, Christelle; Fesselet, Marie; Wyler, Michele; Mascher, Fabio; Mavrodi, Olga; Mavrodi, Dmitri; Maurhofer, Monika; Keel, Christoph (2017). Relationships between root pathogen resistance, abundance and expression of pseudomonas antimicrobial genes, and soil properties in representative swiss agricultural soils. Frontiers in Plant Science, 8:427.
Hyles, J; Vautrin, S; Pettolino, F; MacMillan, C; Stachurski, Z; Breen, J; Berges, H; Wicker, T; Spielmeyer, W (2017). Repeat-length variation in a wheat cellulose synthase-like gene is associated with altered tiller number and stem cell wall composition. Journal of Experimental Botany, 68(7):1519-1529.
Grossmann, Jonas; Fernández, Helena; Chaubey, Pururawa M; Valdés, Ana E; Gagliardini, Valeria; Cañal, María J; Russo, Giancarlo; Grossniklaus, Ueli (2017). Proteogenomic analysis greatly expands the identification of proteins related to reproduction in the apogamous fern dryopteris affinis ssp. affinis. Frontiers in Plant Science, 8:336.
Zipfel, Cyril; Oldroyd, Giles E D (2017). Plant signalling in symbiosis and immunity. Nature, 543(7645):328-336.
Bender, Kyle W; Blackburn, R Kevin; Monaghan, Jacqueline; Derbyshire, Paul; Menke, Frank L H; Zipfel, Cyril; Goshe, Michael B; Zielinski, Raymond E; Huber, Steven C (2017). Autophosphorylation-based Calcium (Ca2+) Sensitivity Priming and Ca2+/Calmodulin Inhibition of Arabidopsis thaliana Ca2+-dependent Protein Kinase 28 (CPK28). Journal of Biological Chemistry, 292(10):3988-4002.
Rinaldo, Amy; Gilbert, Brian; Boni, Rainer; Krattinger, Simon G; Singh, Davinder; Park, Robert F; Lagudah, Evans; Ayliffe, Michael (2017). The Lr34 adult plant rust resistance gene provides seedling resistance in durum wheat without senescence. Plant Biotechnology Journal, 15(7):894-905.
Bücherl, Christoph A; Jarsch, Iris K; Schudoma, Christian; Segonzac, Cécile; Mbengue, Malick; Robatzek, Silke; MacLean, Daniel; Ott, Thomas; Zipfel, Cyril (2017). Plant immune and growth receptors share common signalling components but localise to distinct plasma membrane nanodomains. eLife, 6:e25114.
Shabarova, Tanja; Kasalický, Vojtěch; Šimek, Karel; Nedoma, Jiří; Znachor, Petr; Posch, Thomas; Pernthaler, Jakob; Salcher, Michaela M (2017). Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach. Environmental Microbiology, 19(3):1296-1309.
Krattinger, Simon G; Keller, Beat (2017). Resistance: Double gain with one gene. Nature Plants, 3:17019.
Kuhn, Benjamin M; Nodzyński, Tomasz; Errafi, Sanae; Bucher, Rahel; Gupta, Shibu; Aryal, Bibek; Dobrev, Petre; Bigler, Laurent; Geisler, Markus; Zažímalová, Eva; Friml, Jiří; Ringli, Christoph (2017). Flavonol-induced changes in PIN2 polarity and auxin transport in the Arabidopsis thaliana rol1-2 mutant require phosphatase activity. Scientific Reports, 7:41906.
Menardo, Fabrizio; Wicker, Thomas; Keller, Beat (2017). Reconstructing the evolutionary history of powdery mildew lineages (Blumeria graminis) at different evolutionary time scales with NGS data. Genome Biology and Evolution, 9(2):446-456.
Shubchynskyy, Volodymyr; Boniecka, Justyna; Schweighofer, Alois; Simulis, Justinas; Kvederaviciute, Kotryna; Stumpe, Michael; Mauch, Felix; Balazadeh, Salma; Mueller-Roeber, Bernd; Boutrot, Freddy; Zipfel, Cyril; Meskiene, Irute (2017). Protein phosphatase AP2C1 negatively regulates basal resistance and defense responses to Pseudomonas syringae. Journal of Experimental Botany, 68(5):1169-1183.
Zhang, Jie; Hwang, Jae-Ung; Song, Won-Yong; Martinoia, Enrico; Lee, Youngsook (2017). Identification of amino acid residues important for the arsenic resistance function of Arabidopsis ABCC1. FEBS letters, 591(4):656-666.
Khare, Deepa; Mitsuda, Nobukata; Lee, Seungchul; Song, Won-Yong; Hwang, Daehee; Ohme-Takagi, Masaru; Martinoia, Enrico; Lee, Youngsook; Hwang, Jae-Ung (2017). Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytologist, 213(3):1257-1273.
Sucher, Justine. Study of the wheat resistance gene Lr34 after its transfer into heterologous crop species. 2017, University of Zurich, Faculty of Science.
Stegmann, Martin; Monaghan, Jacqueline; Smakowska-Luzan, Elwira; Rovenich, Hanna; Lehner, Anita; Holton, Nicholas; Belkhadir, Youssef; Zipfel, Cyril (2017). The receptor kinase FER is a RALF-regulated scaffold controlling plant immune signaling. Science, 355(6322):287-289.
Carlier, Aurelien; Cnockaert, Margo; Fehr, Linda; Vandamme, Peter; Eberl, Leo (2017). Draft genome and description of Orrella dioscoreae gen. nov. sp. nov., a new species of Alcaligenaceae isolated from leaf acumens of Dioscorea sansibarensis. Systematic and Applied Microbiology, 40(1):11-21.
Weigert, Michael; Ross-Gillespie, Adin; Leinweber, Anne; Pessi, Gabriella; Brown, Sam P; Kümmerli, Rolf (2017). Manipulating virulence factor availability can have complex consequences for infections. Evolutionary Applications, 10(1):91-101.
Vogler, Hannes; Grossniklaus, Ueli; Hedhly, Afif (2017). An introduction to male germline development. In: Schmidt, Anja. Plant Germline Development. New York: Springer, 3-15.
Alfreider, Albin; Baumer, Andreas; Bogensperger, Teresa; Posch, Thomas; Salcher, Michaela M; Summerer, Monika (2017). CO2 assimilation strategies in stratified lakes: Diversity and distribution patterns of chemolithoautotrophs. Environmental Microbiology, 19(7):2754-2768.
She, Wenjing; Baroux, Célia; Grossniklaus, Ueli (2017). Cell-type specific chromatin analysis in whole-mount plant tissues by immunostaining. In: Bemer, Marian; Baroux, Célia. Plant Chromatin Dynamics. New York: Springer, 443-454.
Singla, Jyoti; Lüthi, Linda; Wicker, Thomas; Bansal, Urmil; Krattinger, Simon G; Keller, Beat (2017). Characterization of Lr75: a partial, broad-spectrum leaf rust resistance gene in wheat. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 130(1):1-12.
Hu, Chengzhi; Munglani, Gautam; Vogler, Hannes; Ndinyanka Fabrice, Tohnyui; Shamsudhin, Naveen; Wittel, Falk K; Ringli, Christoph; Grossniklaus, Ueli; Herrmann, Hans J; Nelson, Bradley J (2017). Characterization of size-dependent mechanical properties of tip-growing cells using a lab-on-chip device. Lab on a chip, 17(1):82-90.
Leinweber, Anne; Fredrik Inglis, R; Kümmerli, Rolf (2017). Cheating fosters species co-existence in well-mixed bacterial communities. The ISME journal, 11(5):1179-1188.
Grob, Stefan; Grossniklaus, Ueli (2017). Chromatin Conformation Capture-Based Analysis of Nuclear Architecture. In: Kovalchuk, I. Plant Epigenetics. Boston, MA: Springer, 15-32.
You, Wanhui; Pien, Stéphane; Grossniklaus, Ueli (2017). Chromatin Immunoprecipitation Protocol for Histone Modifications and Protein-DNA binding analyses in arabidopsis. In: Kovalchuk, I. Plant Epigenetics. Boston, MA: Springer, 1-13.
Grob, Stefan; Grossniklaus, Ueli (2017). Chromosome conformation capture-based studies reveal novel features of plant nuclear architecture. Current Opinion in Plant Biology, 36:149-157.
Lardi, Martina; de Campos, Samanta Bolzan; Purtschert, Gabriela; Eberl, Leo; Pessi, Gabriella (2017). Competition Experiments for Legume Infection Identify Burkholderia phymatum as a Highly Competitive β-Rhizobium. Frontiers in Microbiology, 8:1527.
Sasheva, Pavlina; Grossniklaus, Ueli (2017). Differentially methylated region-representational difference analysis (DMR-RDA): a powerful method to identify DMRs in uncharacterized genomes. In: Kovalchuk, I. Plant Epigenetics. Boston, MA: Springer, 113-125.
Honegger, Rosmarie; Edwards, Dianne; Axe, Lindsey; Strullu-Derrien, Christine (2017). Fertile Prototaxites taiti: a basal ascomycete with inoperculate, polysporous asci lacking croziers. Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences, 373(1739):20170146.
Qureshi, Naeela; Bariana, Harbans; Forrest, Kerrie; Hayden, Matthew; Keller, Beat; Wicker, Thomas; Faris, Justin; Salina, Elena; Bansal, Urmil (2017). Fine mapping of the chromosome 5B region carrying closely linked rust resistance genes Yr47 and Lr52 in wheat. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 130(3):495-504.
Meier, Margrith; Suppiger, Angela; Eberl, Leo; Seeger, Stefan (2017). Functional silver-silicone-nanofilament-composite material for water disinfection. Small, 13(4):1601072.
Hu, Chengzhi; Vogler, Hannes; Aellen, Marianne; Shamsudhin, Naveen; Jang, Bumjin; Burri, Jan T; Läubli, Nino; Grossniklaus, Ueli; Pané, Salvador; Nelson, Bradley J (2017). High precision, localized proton gradients and fluxes generated by a microelectrode device induce differential growth behaviors of pollen tubes. Lab on a chip, 17(4):671-680.
Pires, Nuno D; Grossniklaus, Ueli (2017). Identification of parent-of-origin-dependent QTLs using bulk-segregant sequencing (Bulk-Seq). In: Bemer, Marian; Baroux, Célia. Plant Chromatin Dynamics. New York: Springer, 361-371.
Hauenstein, Mareike; Hörtensteiner, Stefan (2017). Isolation and detection of the chlorophyll catabolite hydroxylating activity from capsicum annuum chromoplasts. Bio-protocol, 7(18):e2561.
Bouchaud, Charlene; Jacquat, Christiane; Martinoli, Danièle (2017). Landscape use and fruit cultivation in Petra (Jordan) from Early Nabataean to Byzantine times (2nd century bc–5th century ad). Vegetation History and Archaeobotany, 26(2):223-244.
Rellstab, C; Fischer, M C; Zoller, S; Graf, R; Tedder, Andrew; Shimizu, Kentaro K; Widmer, A; Holderegger, R; Gugerli, F (2017). Local adaptation (mostly) remains local: reassessing environmental associations of climate-related candidate SNPs in Arabidopsis halleri. Heredity, 118(2):193-201.
Vogler, Hannes; Shamsudhin, Naveen; Nelson, Bradley J; Grossniklaus, Ueli (2017). Measuring cytomechanical forces on growing pollen tubes. In: Kovalchuk, I. Pollen tip growth : from biophysical aspects to systems biology. New York: Springer, 65-85.
Bailly, Aurélien; Weisskopf, Laure (2017). Mining the Volatilomes of Plant-Associated Microbiota for New Biocontrol Solutions. Frontiers in Microbiology:8:1638.
McNally, Kaitlin. Molecular and evolutionary studies of race-specific avirulence factors from wheat powdery mildew (Blumeria graminis f. sp. tritici). 2017, University of Zurich, Faculty of Science.
de Campos, Samanta Bolzan; Lardi, Martina; Gandolfi, Alessia; Eberl, Leo; Pessi, Gabriella (2017). Mutations in Two Paraburkholderia phymatum Type VI Secretion Systems Cause Reduced Fitness in Interbacterial Competition. Frontiers in Microbiology:8:2473.
Strullu-Derrien, Christine; Spencer, Alan R T; Goral, Tomasz; Dee, Jaclyn; Honegger, Rosmarie; Kenrick, Paul; Longcore, Joyce E; Berbee, Mary L (2017). New insights into the evolutionary history of Fungi from a 407 Ma Blastocladiomycota fossil showing a complex hyphal thallus. Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences, 373(1739):20160502.
Baroux, Célia; Pecinka, Ales; Fuchs, Jörg; Kreth, Gregor; Schubert, Ingo; Grossniklaus, Ueli (2017). Non-random chromosome arrangement in triploid endosperm nuclei. Chromosoma, 126(1):115-124.
Vogiatzaki, Evangelia; Baroux, Célia; Jung, Ji-Yul; Poirier, Yves (2017). PHO1 exports phosphate from the chalazal seed coat to the embryo in developing arabidopsis seeds. Current Biology, 27(19):2893-2900.
Kotliński, Maciej; Knizewski, Lukasz; Muszewska, Anna; Rutowicz, Kinga; Lirski, Maciej; Schmidt, Anja; Baroux, Célia; Ginalski, Krzysztof; Jerzmanowski, Andrzej (2017). Phylogeny-based systematization of arabidopsis proteins with histone H1 globular domain. Plant Physiology, 174(1):27-34.
Grossniklaus, Ueli (2017). Polyspermy produces tri-parental seeds in maize. Current Biology, 27(24):1300-1302.
Butaitė, Elena. Pyoverdine production and its social effects in natural communities of Pseudomonas bacteria. 2017, University of Zurich, Faculty of Science.
Mecchia, Martin A; Santos-Fernandez, Gorka; Duss, Nadine N; Somoza, Sofía C; Boisson-Dernier, Aurélien; Gagliardini, Valeria; Martínez-Bernardini, Andrea; Fabrice, Tohnyui Ndinyanka; Ringli, Christoph; Muschietti, Jorge P; Grossniklaus, Ueli (2017). RALF4/19 peptides interact with LRX proteins to control pollen tube growth in Arabidopsis. Science, 358(6370):1600-1603.
Zhao, Xin’Ai; Bramsiepe, Jonathan; Van Durme, Matthias; Komaki, Shinichiro; Prusicki, Maria Ada; Maruyama, Daisuke; Forner, Joachim; Medzihradszky, Anna; Wijnker, Erik; Harashima, Hirofumi; Lu, You; Schmidt, Anja; Guthörl, Daniela; Logroño, Rosa Sahún; Guan, Yonsheng; Pochon, Gaetan; Grossniklaus, Ueli; Laux, Thomas; Higashiyama, Tetsuya; Lohmann, Jan U; Nowack, Moritz K; Schnittger, Arp (2017). RETINOBLASTOMA RELATED1 mediates germline entry in Arabidopsis. Science, 356:6336.
Singh, Simrat Pal; Keller, Beat; Gruissem, Wilhelm; Bhullar, Navreet K (2017). Rice NICOTIANAMINE SYNTHASE 2 expression improves dietary iron and zinc levels in wheat. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 130(2):283-292.
Menardo, Fabrizio. Evolutionary Genomics of Grass Powdery Mildew (Blumeria graminis). 2016, University of Zurich, Faculty of Science.
Suppiger, Angela. Fatty Acid-Based Signalling in the Genus Burkholderia: Distribution, Mechanism, Cross-Linkage. 2016, University of Zurich, Faculty of Science.
Urfer, Matthias; Bogdanovic, Jasmina; Lo Monte, Fabio; Moehle, Kerstin; Zerbe, Katja; Omasits, Ulrich; Ahrens, Christian H; Pessi, Gabriella; Eberl, Leo; Robinson, John A (2016). A peptidomimetic antibiotic targets outer membrane proteins and disrupts selectively the outer membrane in Escherichia coli. Journal of Biological Chemistry, 291:1921-1932.
Granato, Elisa T; Harrison, Freya; Kümmerli, Rolf (2016). Do bacterial “virulence factors” always increase virulence? A meta-analysis of pyoverdine production in Pseudomonas aeruginosa as a test case. Frontiers in Microbiology, 7:1952.
Sasse, Joëlle; Schlegel, Markus; Borghi, Lorenzo; Ullrich, Friederike; Lee, Miyoung; Liu, Guo-Wei; Giner, José-Luis; Kayser, Oliver; Bigler, Laurent; Martinoia, Enrico; Kretzschmar, Tobias (2016). Petunia hybrida PDR2 is involved in herbivore defense by controlling steroidal contents in trichomes. Plant, Cell & Environment, 39(12):2725-2739.
Das, A. Characterization of the PAO/phyllobilin Pathway of Chlorophyll Breakdown in Grasses. 2016, University of Zurich, Faculty of Science.
Xin, Xiu-Fang; Nomura, Kinya; Aung, Kyaw; Velásquez, André C; Yao, Jian; Boutrot, Freddy; Chang, Jeff H; Zipfel, Cyril; He, Sheng Yang (2016). Bacteria establish an aqueous living space in plants crucial for virulence. Nature, 539(7630):524-529.
Dirren, Sebastian. The basal Opisthokonts Nuclearia spp. with associated bacterial symbionts: aspects of diversity and ecology. 2016, University of Zurich, Faculty of Science.
Sánchez-Martín, Javier; Montilla-Bascón, Gracia; Mur, Luis A J; Rubiales, Diego; Prats, Elena (2016). Compromised photosynthetic electron flow and H2O2 generation correlate with genotype-specific stomatal dysfunctions during resistance against powdery mildew in oats. Frontiers in Plant Science, 7:1660.
Baumgartner, M; Neu, T R; Blom, J F; Pernthaler, J (2016). Protistan predation interferes with bacterial long‐term adaptation to substrate restriction by selecting for defence morphotypes. Journal of Evolutionary Biology, 29(11):2297-2310.
Sánchez-Martín, Javier; Steuernagel, Burkhard; Ghosh, Sreya; Herren, Gerhard; Hurni, Severine; Adamski, Nikolai; Vrána, Jan; Kubaláková, Marie; Krattinger, Simon G; Wicker, Thomas; Doležel, Jaroslav; Keller, Beat; Wulff, Brande B H (2016). Rapid gene isolation in barley and wheat by mutant chromosome sequencing. Genome Biology, 17(1):221.
Simonini, Sara; Deb, Joyita; Moubayidin, Laila; Stephenson, Pauline; Valluru, Manoj; Freire-Rios, Alejandra; Sorefan, Karim; Weijers, Dolf; Friml, Jiří; Østergaard, Lars (2016). A noncanonical auxin-sensing mechanism is required for organ morphogenesis in Arabidopsis. Genes and Development, 30(20):2286-2296.
Hauenstein, Mareike; Christ, Bastien; Das, Aditi; Aubry, Sylvain; Hörtensteiner, Stefan (2016). A role for TIC55 as a hydroxylase of phyllobilins, the products of chlorophyll breakdown during plant senescence. Plant Cell, 28(10):2510-2527.
Salcher, Michaela Maria; Šimek, Karel (2016). Isolation and cultivation of planktonic freshwater microbes is essential for a comprehensive understanding of their ecology. Aquatic Microbial Ecology, 77(3):183-196.
Hersemann, Lena. Characterization of Virulence Factors in Xanthomonas translucens pv. graminis. 2016, University of Zurich, Faculty of Science.
Schöneberg, Torsten; Martin, Charlotte; Wettstein, Felix E; Bucheli, Thomas D; Mascher, Fabio; Bertossa, Mario; Musa, Tomke; Keller, Beat; Vogelgsang, Susanne (2016). Fusarium and mycotoxin spectra in Swiss barley are affected by various cropping techniques. Food Additives & Contaminants. Part A, Chemistry, Analysis, Control, Exposure & Risk Assessment, 33(10):1608-1619.
Errafi, Sanae. Old Compounds but New Functions: Insights into Novel Modes of Action of Arabidopsis Flavonols and the Flavonol Synthase FLS1 in Modulating Cell Growth. 2016, University of Zurich, Faculty of Science.
Couto, Daniel; Zipfel, Cyril (2016). Regulation of pattern recognition receptor signalling in plants. Nature Reviews. Immunology, 16(9):537-552.
Burri, Jan T; Hu, Chengzhi; Shamsudhin, Naveen; Wang, Xueqi; Vogler, Hannes; Grossniklaus, Ueli; Nelson, Bradley J (2016). Dual-axis Cellular Force Microscope for mechanical characterization of living plant cells. In: Automation Science and Engineering (CASE), 2016 IEEE International Conference on, Fort Worth, Texas, 21 August 2016 - 25 August 2016. IEEE Xplore, 942-947.
Shamsudhin, Naveen; Atakan, Huseyin Baris; Laubli, Nino; Vogler, Hannes; Hu, Chengzhi; Sebastian, Abu; Grossniklaus, Ueli; Nelson, Bradley J (2016). Probing the micromechanics of the fastest growing plant cell — The pollen tube. In: Engineering in Medicine and Biology Society (EMBC), 2016 IEEE 38th Annual International Conference of the, Lake Buena Vista (Orlando), Florida USA, 16 August 2016 - 20 August 2016. IEEE Xplore, 461-464.
Magalhães, Diogo M; Scholte, Larissa L S; Silva, Nicholas V; Oliveira, Guilherme C; Zipfel, Cyril; Takita, Marco A; de Souza, Alessandra Alves (2016). LRR-RLK family from two Citrus species: genome-wide identification and evolutionary aspects. BMC Genomics, 17(1):623.
Ben-David, Roi; Parks, Ryan; Dinoor, Amos; Kosman, Evsey; Wicker, Thomas; Keller, Beat; Cowger, Christina (2016). Differentiation among blumeria graminis f. sp.tritici isolates originating from wild versus domesticated triticum species in Israel. Phytopathology, 106(8):861-870.
Couto, Daniel; Niebergall, Roda; Liang, Xiangxiu; Bücherl, Christoph A; Sklenar, Jan; Macho, Alberto P; Ntoukakis, Vardis; Derbyshire, Paul; Altenbach, Denise; Maclean, Dan; Robatzek, Silke; Uhrig, Joachim; Menke, Frank; Zhou, Jian-Min; Zipfel, Cyril (2016). The Arabidopsis Protein Phosphatase PP2C38 Negatively Regulates the Central Immune Kinase BIK1. PLoS Pathogens, 12(8):e1005811.
Wilson, David. Evolution of resistance to antimicrobial molecules. 2016, University of Zurich, Faculty of Science.
Hassler, Sebastian; Jung, Benjamin; Lemke, Lilia; Novák, Ondřej; Strnad, Miroslav; Martinoia, Enrico; Neuhaus, H Ekkehard (2016). Function of the Golgi-located phosphate transporter PHT4;6 is critical for senescence-associated processes in Arabidopsis. Journal of Experimental Botany, 67(15):4671-4684.
Hegenauer, Volker; Fürst, Ursula; Kaiser, Bettina; Smoker, Matthew; Zipfel, Cyril; Felix, Georg; Stahl, Mark; Albert, Markus (2016). Detection of the plant parasite Cuscuta reflexa by a tomato cell surface receptor. Science, 353(6298):478-481.
Krattinger, Simon G; Keller, Beat (2016). Molecular genetics and evolution of disease resistance in cereals. New Phytologist, 212(2):320-332.
Yeh, Yu-Hung; Panzeri, Dario; Kadota, Yasuhiro; Huang, Yi-Chun; Huang, Pin-Yao; Tao, Chia-Nan; Roux, Milena; Chien, Hsiao-Chiao; Chin, Tzu-Chuan; Chu, Po-Wei; Zipfel, Cyril; Zimmerli, Laurent (2016). The Arabidopsis Malectin-Like/LRR-RLK IOS1 is Critical for BAK1-Dependent and BAK1-Independent Pattern-Triggered Immunity. Plant Cell, 28(7):1701-1721.
Jenul, C. The Role of Nitrosohydroxylamine Secondary Metabolites in Microbial Antagonism and Cell-Cell Communication in Burkholderia cenocepacia H111. 2016, University of Zurich, Faculty of Science.
Schilcher, Katrin. Antibiotic-Mediated Modulation of Staphylococcus aureus Virulence Factors. 2016, University of Zurich, Faculty of Science.
Borghi, Lorenzo; Liu, Guo-Wei; Emonet, Aurélia; Kretzschmar, Tobias; Martinoia, Enrico (2016). The importance of strigolactone transport regulation for symbiotic signaling and shoot branching. Planta, 243(6):1351-1360.
Bombarely, Aureliano; Moser, Michel; Amrad, Avichai; Bao, Manzhu; Bapaume, Laure; Barry, Cornelius S; Bliek, Mattijs; Boersma, Maaike R; Borghi, Lorenzo; Bruggmann, Rémy; Bucher, Marcel; D'Agostino, Nunzio; Davies, Kevin; Druege, Uwe; Dudareva, Natalia; Egea-Cortines, Marcos; Delledonne, Massimo; Fernandez-Pozo, Noe; Franken, Philipp; Grandont, Laurie; Heslop-Harrison, J S; Hintzsche, Jennifer; Johns, Mitrick; Koes, Ronald; Lv, Xiaodan; Lyons, Eric; Malla, Diwa; Martinoia, Enrico; Mattson, Neil S; Morel, Patrice; et al (2016). Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida. Nature Plants, 2(6):16074.
Kamoun, Sophien; Zipfel, Cyril (2016). Fungal pathogenesis: Host modulation every which way. Nature Microbiology, 1(6):16075.
Zürcher, Evelyne. Characterization of the Arabidopsis Family of PURINE PERMEASES as Candidates for a Cytokinin Transport System. 2016, University of Zurich, Faculty of Science.
Pfeilmeier, Sebastian; Saur, Isabel Marie‐Luise; Rathjen, John Paul; Zipfel, Cyril; Malone, Jacob George (2016). High levels of cyclic-di-GMP in plant-associated Pseudomonas correlate with evasion of plant immunity. Molecular Plant Pathology, 17(4):521-531.
Roffler, Stefan. On the Impact of Transposon Activity on Genome Evolution. 2016, University of Zurich, Faculty of Science.
Bätz, Ulrike. Structure and Physiological Function of the Vacuolar Anion Channel ALMT9 in Arabidopsis thaliana and Vitis Vinifera. 2016, University of Zurich, Faculty of Science.
Saur, Isabel M L; Kadota, Yasuhiro; Sklenar, Jan; Holton, Nicholas J; Smakowska, Elwira; Belkhadir, Youssef; Zipfel, Cyril; Rathjen, John P (2016). NbCSPR underlies age-dependent immune responses to bacterial cold shock protein in Nicotiana benthamiana. Proceedings of the National Academy of Sciences of the United States of America, 113(12):3389-3394.
Baumgartner, Michael. Experimental Evolution of a Freshwater Isolate with Inducible Aggregate Formation – Genome Streamlining and Variability of Phenotypic Plasticity. 2016, University of Zurich, Faculty of Science.
Faltermann, Susanne. Cellular Uptake and Effects of Cyanobacterial Toxins in Zebrafish, Danio rerio. 2016, University of Zurich, Faculty of Science.
Kamoun, Sophien; Zipfel, Cyril (2016). Class uncorrected errors as misconduct. Nature, 531(7593):173.
Singla, Jyoti. Genetic Characterization and High Resolution Analysis of Lr75: a Novel Adult Plant Leaf Rust Resistance Gene in Wheat. 2016, University of Zurich, Faculty of Science.
Hwang, Jae-Ung; Song, Won-Yong; Hong, Daewoong; Ko, Donghwi; Yamaoka, Yasuyo; Jang, Sunghoon; Yim, Sojeong; Lee, Eunjung; Khare, Deepa; Kim, Kyungyoon; Palmgren, Michael; Yoon, Hwan Su; Martinoia, Enrico; Lee, Youngsook (2016). Plant ABC transporters enable many unique aspects of a terrestrial plant's lifestyle. Molecular Plant, 9(3):338-355.
Kuhn, Benjamin M; Errafi, Sanae; Bucher, Rahel; Dobrev, Petre; Geisler, Markus; Bigler, Laurent; Zažímalová, Eva; Ringli, Christoph (2016). 7-Rhamnosylated flavonols modulate homeostasis of the plant hormone auxin and affect plant development. Journal of Biological Chemistry, 291(10):5385-5395.
Bheema Lingeswara Reddy, I N; Chandrasekhar, K; Zewdu, Y; Dinoor, A; Keller, B; Ben-David, R (2016). Identification and genetic mapping of PmAF7DS a powdery mildew resistance gene in bread wheat (Triticum aestivum L.). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 129(6):1127-1137.
Bourras, Salim; McNally, Kaitlin E; Müller, Marion C; Wicker, Thomas; Keller, Beat (2016). Avirulence Genes in Cereal Powdery Mildews: The Gene-for-Gene Hypothesis 2.0. Frontiers in Plant Science:7:241.
Lira, Bruno Silvestre; Rosado, Daniele; Almeida, Juliana; de Souza, Amanda Pereira; Buckeridge, Marcos Silveira; Purgatto, Eduardo; Guyer, Luzia; Hörtensteiner, Stefan; Freschi, Luciano; Rossi, Magdalena (2016). Pheophytinase knockdown impacts carbon metabolism and nutraceutical content under normal growth conditions in tomato. Plant & Cell Physiology, 57(3):642-653.
Morales, Jorge; Kadota, Yasuhiro; Zipfel, Cyril; Molina, Antonio; Torres, Miguel-Angel (2016). The Arabidopsis NADPH oxidases RbohD and RbohF display differential expression patterns and contributions during plant immunity. Journal of Experimental Botany, 67(6):1663-1676.
Pedrazzini, Emanuela; Caprera, Andrea; Fojadelli, Ilaria; Stella, Alessandra; Rocchetti, Alessandra; Bassin, Barbara; Martinoia, Enrico; Vitale, Alessandro (2016). The Arabidopsis tonoplast is almost devoid of glycoproteins with complex N-glycans, unlike the rat lysosomal membrane. Journal of Experimental Botany, 67(6):1769-1781.
Krattinger, Simon G; Keller, Beat (2016). Trapping the intruder — immune receptor domain fusions provide new molecular leads for improving disease resistance in plants. Genome Biology, 17(1):1-3.
Horrer, Daniel. Starch Metabolism in Guard Cells of Arabidopsis thaliana. 2016, University of Zurich, Faculty of Science.
Yue, Kun; Sandal, Priyanka; Williams, Elisabeth L; Murphy, Evan; Stes, Elisabeth; Nikonorova, Natalia; Ramakrishna, Priya; Czyzewicz, Nathan; Montero-Morales, Laura; Kumpf, Robert; Lin, Zhefeng; van de Cotte, Brigitte; Iqbal, Mudassar; Van Bel, Michiel; Van De Slijke, Eveline; Meyer, Matthew R; Gadeyne, Astrid; Zipfel, Cyril; De Jaeger, Geert; Van Montagu, Marc; Van Damme, Daniël; Gevaert, Kris; Rao, A Gururaj; Beeckman, Tom; De Smet, Ive (2016). PP2A-3 interacts with ACR4 and regulates formative cell division in the Arabidopsis root. Proceedings of the National Academy of Sciences of the United States of America, 113(5):1447-1452.
Almeida, Juliana; et al; Guyer, Luzia; Hörtensteiner, Stefan; Rossi, Magdalena (2016). Down-regulation of tomato PHYTOL KINASE strongly impairs tocopherol biosynthesis and affects prenyllipid metabolism in an organ-specific manner. Journal of Experimental Botany, 67(3):919-934.
Trempel, Fabian; Kajiura, Hiroyuki; Ranf, Stefanie; Grimmer, Julia; Westphal, Lore; Zipfel, Cyril; Scheel, Dierk; Fujiyama, Kazuhito; Lee, Justin (2016). Altered glycosylation of exported proteins, including surface immune receptors, compromises calcium and downstream signaling responses to microbe-associated molecular patterns in Arabidopsis thaliana. BMC Plant Biology, 16:31.
Singla, J; Krattinger, S G (2016). Biotic stress resistance genes in wheat. In: Wrigley, C W; Faubion, J; Corke, H; Seetharaman, K. Encyclopedia of Food Grains. Oxford: Elsevier, 388-392.
Mächler, Elvira; Deiner, Kristy; Spahn, Fabienne; Altermatt, Florian (2016). Fishing in the water: effect of sampled water volume on environmental dna-based detection of macroinvertebrates. Environmental Science & Technology, 50(1):305-312.
Sakuraba, Yasuhito; Han, Su-Hyun; Lee, Sang-Hwa; Hörtensteiner, Stefan; Paek, Nam-Chon (2016). Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Plant Cell Reports, 35(1):155-166.
Medeiros, David B; Martins, Samuel C V; Cavalcanti, João Henrique F; Daloso, Danilo M; Martinoia, Enrico; Nunes-Nesi, Adriano; DaMatta, Fábio M; Fernie, Alisdair R; Araújo, Wagner L (2016). Enhanced photosynthesis and growth in atquac1 knockout mutants are due to altered organic acid accumulation and an increase in both stomatal and mesophyll conductance. Plant Physiology, 170(1):86-101.
Inglis, R Fredrik; Biernaskie, Jay; Gardner, Andy; Kümmerli, Rolf (2016). Presence of a loner strain maintains cooperation and diversity in well-mixed bacterial communities. Proceedings of the Royal Society of London, Series B: Biological Sciences, 283(1822):20152682.
Glover, Natasha M; Antoniadi, Ioanna; George, Gavin M; Götzenberger, Lars; Gutzat, Ruben; Koorem, Kadri; Liancourt, Pierre; Rutowicz, Kinga; Saharan, Krishna; You, Wanhui; Mayer, Philipp (2016). A Pragmatic Approach to Getting Published: 35 Tips for Early Career Researchers. Frontiers in Plant Science:7:610.
Christ, Bastien; Hauenstein, Mareike; Hörtensteiner, Stefan (2016). A liquid chromatography-mass spectrometry platform for the analysis of phyllobilins, the major degradation products of chlorophyll in Arabidopsis thaliana. The Plant Journal, 88(3):505-518.
Müller, Lena M; Lindner, Heike; Pires, Nuno D; Gagliardini, Valeria; Grossniklaus, Ueli (2016). A subunit of the oligosaccharyltransferase complex is required for interspecific gametophyte recognition in Arabidopsis. Nature Communications, 7:10826.
De Sarkar, Suman; Blom, Judith F; Bethuel, Yann; Jüttner, Friedrich; Gademann, Karl (2016). Allelopathic Activity of the Iron Chelator Anachelin - A Molecular Hybrid with a Dual Mode of Action. Helvetica Chimica Acta, 99(10):760-773.
Sedeek, Khalid E M; Whittle, Edward; Guthörl, Daniela; Grossniklaus, Ueli; Shanklin, John; Schlüter, Philipp M (2016). Amino acid change in an Orchid desaturase enables mimicry of the pollinator’s sex pheromone. Current Biology, 26(11):1505-1511.
Schirdewahn, T; Mascher, M; Bucheli, T D; Bertossa, M; Musa, T; Wettstein, F E; Keller, B; Vogelsang, S (2016). Anbaufaktoren beeinflussen Fusarien und Mykotoxine in Schweizer Gerste. Agrarforschung Schweiz, 7(9):372-377.
Vale, Pedro; McNally, Luke; Doeschl-Wilson, Andrea; King, Kayla; Popat, Roman; Domingo-Sananes, Maria; Allen, Judith; Soares, Miguel; Kümmerli, Rolf (2016). Beyond killing: can we find new ways to manage infections? Evolution, Medicine, and Public Health, 2016(1):148-157.
Zürcher, Evelyne. Characterization of the Arabidopsis family of Purine Permeases as candidates for a Cytokinin transport system. 2016, University of Zurich, Faculty of Science.
Faltermann, Susanne; Grundler, Verena; Gademann, Karl; Pernthaler, Jakob; Fent, Karl (2016). Comparative effects of nodularin and microcystin-LR in zebrafish: 2. Uptake and molecular effects in eleuthero-embryos and adult liver with focus on endoplasmic reticulum stress. Aquatic Toxicology, 171:77-87.
Paape, Timothy; Hatakeyama, Masaomi; Shimizu-Inatsugi, Rie; Cereghetti, Teo; Onda, Yoshihiko; Kenta, Tanaka; Sese, Jun; Shimizu, Kentaro K (2016). Conserved but attenuated parental gene expression in allopolyploids: constitutive zinc hyperaccumulation in the allotetraploidArabidopsis kamchatica. Molecular Biology and Evolution:1-44.
Wicker, Thomas; Yu, Yeisoo; Haberer, Georg; Mayer, Klaus F X; Marri, Pradeep Reddy; Rounsley, Steve; Chen, Mingsheng; Zuccolo, Andrea; Panaud, Olivier; Wing, Rod A; Roffler, Stefan (2016). DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses. Nature Communications, 7:12790.
Suppiger, Angela; Aguilar, Claudio; Eberl, Leo (2016). Evidence for the widespread production of DSF family signal molecules by members of the genusBurkholderiaby the aid of novel biosensors. Environmental Microbiology Reports, 8(1):38-44.
Pinto-Carbó, Marta; Sieber, Simon; Dessein, Steven; Wicker, Thomas; Verstraete, Brecht; Gademann, Karl; Eberl, Leo; Carlier, Aurelien (2016). Evidence of horizontal gene transfer between obligate leaf nodule symbionts. The ISME journal, 10(9):2092-2105.
Turnbull, Lynne; Toyofuku, Masanori; Hynen, Amelia L; Kurosawa, Masaharu; Pessi, Gabriella; Petty, Nicola K; Osvath, Sarah R; Cárcamo-Oyarce, Gerardo; Gloag, Erin S; Shimoni, Raz; Omasits, Ulrich; Ito, Satoshi; Yap, Xinhui; Monahan, Leigh G; Cavaliere, Rosalia; Ahrens, Christian H; Charles, Ian G; Nomura, Nobuhiko; Eberl, Leo; Whitchurch, Cynthia B (2016). Explosive cell lysis as a mechanism for the biogenesis of bacterial membrane vesicles and biofilms. Nature Communications, 7:online.
Kamber, Tim; Buchmann, Jan P; Pothier, Joël F; Smits, Theo H M; Wicker, Thomas; Duffy, Brion (2016). Fire blight disease reactome: RNA-seq transcriptional profile of apple host plant defense responses to Erwinia amylovora pathogen infection. Scientific Reports, 6:21600.
Khanday, Imtiyaz; Das, Sanjukta; Chongloi, Grace L; Bansal, Manju; Grossniklaus, Ueli; Vijayraghavan, Usha (2016). Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiology, 172(1):372-388.
Čuklina, Jelena; Hahn, Julia; Imakaev, Maxim; Omasits, Ulrich; Förstner, Konrad U; Ljubimov, Nikolay; Goebel, Melanie; Pessi, Gabriella; Fischer, Hans-Martin; Ahrens, Christian H; Gelfand, Mikhail S; Evguenieva-Hackenberg, Elena (2016). Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis – a rich resource to identify new transcripts, proteins and to study gene regulation. BMC Genomics:17:302.
Florez-Rueda, Ana M; Paris, Margot; Schmidt, Anja; Widmer, Alex; Grossniklaus, Ueli; Städler, Thomas (2016). Genomic Imprinting in the Endosperm Is Systematically Perturbed in Abortive Hybrid Tomato Seeds. Molecular Biology and Evolution, 33(11):2935-2946.
Horňák, Karel; Schmidheiny, Helen; Pernthaler, Jakob (2016). High-throughput determination of dissolved free amino acids in unconcentrated freshwater by ion-pairing liquid chromatography and mass spectrometry. Journal of Chromatography. A, 1440:85-93.
Kotliński, Maciej; Rutowicz, Kinga; Kniżewski, Łukasz; Palusiński, Antoni; Olędzki, Jacek; Fogtman, Anna; Rubel, Tymon; Koblowska, Marta; Dadlez, Michał; Ginalski, Krzysztof; Jerzmanowski, Andrzej (2016). Histone H1 Variants in Arabidopsis Are Subject to Numerous Post-Translational Modifications, Both Conserved and Previously Unknown in Histones, Suggesting Complex Functions of H1 in Plants. PLoS ONE, 11(1):e0147908.
Menardo, Fabrizio; Praz, Coraline R; Wyder, Stefan; Ben-David, Roi; Bourras, Salim; Matsumae, Hiromi; McNally, Kaitlin E; Parlange, Francis; Riba, Andrea; Roffler, Stefan; Schaefer, Luisa K; Shimizu, Kentaro K; Valenti, Luca; Zbinden, Helen; Wicker, Thomas; Keller, Beat (2016). Hybridization of powdery mildew strains gives rise to pathogens on novel agricultural crop species. Nature Genetics, 48(2):201-205.
Kadota, Yasuhiro; Macho, Alberto P; Zipfel, Cyril (2016). Immunoprecipitation of Plasma Membrane Receptor-Like Kinases for Identification of Phosphorylation Sites and Associated Proteins. In: Botella, Miguel A; Botella, Jose. Plant signal transduction. New York: Springer, 133-144.
Florez Rueda, Ana Marcela; Grossniklaus, Ueli; Schmidt, Anja (2016). Laser-assisted Microdissection (LAM) as a tool for transcriptional profiling of individual cell types. Journal of Visualized Experiments, 111:online.
Rövekamp, Moritz; Bowman, John L; Grossniklaus, Ueli (2016). Marchantia MpRKD Regulates the Gametophyte-Sporophyte Transition by Keeping Egg Cells Quiescent in the Absence of Fertilization. Current Biology, 26(13):1782-1789.
Shi, Gongjun; Zhang, Zengcui; Friesen, Timothy L; Bansal, Urmil; Cloutier, Sylvie; Wicker, Thomas; Rasmussen, Jack B; Faris, Justin D (2016). Marker development, saturation mapping, and high-resolution mapping of the Septoria nodorum blotch susceptibility gene Snn3-B1 in wheat. Molecular Genetics and Genomics, 291(1):107-119.
Shamsudhin, Naveen; Laeubli, Nino; Atakan, Huseyin Baris; Vogler, Hannes; Hu, Chengzhi; Haeberle, Walter; Sebastian, Abu; Grossniklaus, Ueli; Nelson, Bradley J (2016). Massively Parallelized Pollen Tube Guidance and Mechanical Measurements on a Lab-on-a-Chip Platform. PLoS ONE, 11(12):e0168138.
Geisler, Markus; Bailly, Aurélien; Ivanchenko, Maria (2016). Master and servant: Regulation of auxin transporters by FKBPs and cyclophilins. Plant Science, 245:1-10.
Vogler, Hannes; Martinez-Bernardini, Andrea; Grossniklaus, Ueli (2016). Maybe she's NOT the boss: male–female crosstalk during sexual plant reproduction. Genome Biology, 17(1):96.
Eberl, Leo; Vandamme, Peter (2016). Members of the genus Burkholderia: good and bad guys. F1000Research, 5:1007.
Lardi, Martina; Murset, Valérie; Fischer, Hans-Martin; Mesa, Socorro; Ahrens, Christian H; Zamboni, Nicola; Pessi, Gabriella (2016). Metabolomic Profiling of Bradyrhizobium diazoefficiens-Induced Root Nodules Reveals Both Host Plant-Specific and Developmental Signatures. International Journal of Molecular Sciences, 17(6):815.
Stopnisek, Nejc; Zühlke, Daniela; Carlier, Aurélien; Barberán, Albert; Fierer, Noah; Becher, Dörte; Riedel, Katharina; Eberl, Leo; Weisskopf, Laure (2016). Molecular mechanisms underlying the close association between soil Burkholderia and fungi. The ISME journal, 10(1):253-264.
Lüthi, C; Romeis, J; Mauch, F; Grossniklaus, U; Studer, B; Kohler, S (2016). Neue Pflanzenzüchtungstechniken für die Schweizer Landwirtschaft – grosses Potenzial, offene Zukunft. Bern: Akademien der Wisschenschaften Schwei / Swiss Academies Factsheets.
Hedhly, A; Wünsch, A; Kartal, Ö; Herrero, M; Hormaza, J I (2016). Paternal-specific S-allele transmission in sweet cherry (Prunus avium L.): the potential for sexual selection. Journal of Evolutionary Biology, 29(3):490-501.
Shimizu-Inatsugi, Rie; Terada, Aika; Hirose, Kyosuke; Kudoh, Hiroshi; Sese, Jun; Shimizu, Kentaro K (2016). Plant adaptive radiation mediated by polyploid plasticity in transcriptomes. Molecular Ecology:1-35.
Zurcher, E; Liu, J; di Donato, M; Geisler, M; Muller, B (2016). Plant development regulated by cytokinin sinks. Science, 353(6303):1027-1030.
Yankova, Yana; Villiger, Jörg; Pernthaler, Jakob; Schanz, Ferdinand; Posch, Thomas (2016). Prolongation, deepening and warming of the metalimnion change habitat conditions of the harmful filamentous cyanobacterium Planktothrix rubescens in a prealpine lake. Hydrobiologia, 776(1):125-138.
Dirren, Sebastian; Posch, Thomas (2016). Promiscuous and specific bacterial symbiont acquisition in the amoeboid genus Nuclearia (Opisthokonta). FEMS Microbiology Ecology, 92(8):fiw105.
Pires, Nuno D; Bemer, Marian; Müller, Lena M; Baroux, Célia; Spillane, Charles; Grossniklaus, Ueli (2016). Quantitative genetics identifies cryptic genetic variation involved in the paternal regulation of seed development. PLoS Genetics, 12(1):e1005806.
Hedhly, Afif; Vogler, Hannes; Schmid, Marc W; Pazmino, Diana; Gagliardini, Valeria; Santelia, Diana; Grossniklaus, Ueli (2016). Starch Turnover and Metabolism during Flower and Early Embryo Development. Plant Physiology, 172(4):2388-2402.
Zhu, Jinsheng; Bailly, Aurélien; Zwiewka, Marta; Sovero, Valpuri; di Donato, Martin; Ge, Pei; Oehri, Jacqueline; Aryal, Bibek; Hao, Pengchao; Linnert, Miriam; Burgardt, Noelia; Lücke, Christian; Weiwad, Matthias; Michel, Max; Weiergräber, Oliver H; Pollmann, Stephan; Azzarello, Elisa; Mancuso, Stefano; Ferro, Noel; Fukao, Yoichiro; Hoffmann, Celine; Wedlich-Söldner, Roland; Friml, Jiri; Thomas, Clement; Geisler, Markus (2016). TWISTED DWARF1 mediates the action of auxin transport inhibitors on actin cytoskeleton dynamics. Plant Cell, 28(4):930-948.
Suppiger, Angela; Eshwar, Athmanya Konegadde; Stephan, Roger; Kaever, Volkhard; Eberl, Leo; Lehner, Angelika (2016). The DSF type quorum sensing signalling system RpfF/R regulates diverse phenotypes in the opportunistic pathogen Cronobacter. Scientific Reports, 6:18753.
Szklarczyk, Damian; Morris, John H; Cook, Helen; Kuhn, Michael; Wyder, Stefan; Simonovic, Milan; Santos, Alberto; Doncheva, Nadezhda T; Roth, Alexander; Bork, Peer; Jensen, Lars J; von Mering, Christian (2016). The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible. Nucleic Acids Research, 45(D1):D362-D368.
Carlier, Aurelien; Fehr, Linda; Pinto-Carbó, Marta; Schäberle, Till; Reher, Raphael; Dessein, Steven; König, Gabriele; Eberl, Leo (2016). The genome analysis of Candidatus Burkholderia crenata reveals that secondary metabolism may be a key function of the Ardisia crenata leaf nodule symbiosis. Environmental Microbiology, 18(8):2507-2522.
Mathew, Anugraha; Jenul, Christian; Carlier, Aurelien L; Eberl, Leo (2016). The role of siderophores in metal homeostasis of members of the genus B urkholderia. Environmental Microbiology Reports, 8(1):103-109.
Krattinger, Simon G; Sucher, Justine; Selter, Liselotte L; Chauhan, Harsh; Zhou, Bo; Tang, Mingzhi; Upadhyaya, Narayana M; Mieulet, Delphine; Guiderdoni, Emmanuel; Weidenbach, Denise; Schaffrath, Ulrich; Lagudah, Evans S; Keller, Beat (2016). The wheat durable, multipathogen resistance gene Lr34 confers partial blast resistance in rice. Plant Biotechnology Journal, 14(5):1261-1268.
Gossmann, Toni I; Saleh, Dounia; Schmid, Marc W; Spence, Michael A; Schmid, Karl J (2016). Transcriptomes of Plant Gametophytes Have a Higher Proportion of Rapidly Evolving and Young Genes than Sporophytes. Molecular Biology and Evolution, 33(7):1669-1678.
Nestorova, Anna. Towards a function for a novel pollen-specific arabidopsis thaliana protein family DUF1216. 2015, University of Zurich, Faculty of Science.
Roffler, Stefan; Menardo, Fabrizio; Wicker, Thomas (2015). The making of a genomic parasite - the Mothra family sheds light on the evolution of Helitrons in plants. Mobile DNA:6:23.
Süssenbacher, Iris; Hörtensteiner, Stefan; Kräutler, Bernhard (2015). A Dioxobilin-Type Fluorescent Chlorophyll Catabolite as a Transient Early Intermediate of the Dioxobilin-Branch of Chlorophyll Breakdown in Arabidopsis thaliana. Angewandte Chemie Internationale Edition, 54(46):13777-13781.
Jiménez-Góngora, Tamara; Kim, Seong-Ki; Lozano-Durán, Rosa; Zipfel, Cyril (2015). Flg22-Triggered Immunity Negatively Regulates Key BR Biosynthetic Genes. Frontiers in Plant Science, 6:981.
Gou, Mingyue; Zhang, Zemin; Zhang, Ning; Huang, Quansheng; Monaghan, Jacqueline; Yang, Huijun; Shi, Zhenying; Zipfel, Cyril; Hua, Jian (2015). Opposing effects on two phases of defense responses from concerted actions of HSC70 and BON1 in Arabidopsis. Plant Physiology, 169(3):2304-2323.
Song, Won-Yong; Lee, Hyun-Sook; Jin, Sang-Rak; Ko, Donghwi; Martinoia, Enrico; Lee, Youngsook; An, Gynheung; Ahn, Sang-Nag (2015). Rice PCR1 influences grain weight and Zn accumulation in grains. Plant, Cell & Environment, 38(11):2327-2339.
Bao, Kai. Novel organotypic modelling for the study of periodontal infection. 2015, University of Zurich, Faculty of Science.
Neuenschwander, Stefan. Functional Analysis of Pelagic Freshwater Microbes Based on Targeted Enrichment Approaches. 2015, University of Zurich, Faculty of Science.
Borghi, Lorenzo; Kang, Joohyun; Ko, Donghwi; Lee, Youngsook; Martinoia, Enrico (2015). The role of ABCG-type ABC transporters in phytohormone transport. Biochemical Society Transactions, 43(5):924-930.
Patron, Nicola J; Orzaez, Diego; Marillonnet, Sylvestre; Warzecha, Heribert; Matthewman, Colette; Youles, Mark; Raitskin, Oleg; Leveau, Aymeric; Farré, Gemma; Rogers, Christian; Smith, Alison; Hibberd, Julian; Webb, Alex A R; Locke, James; Schornack, Sebastian; Ajioka, Jim; Baulcombe, David C; Zipfel, Cyril; Kamoun, Sophien; Jones, Jonathan D G; Kuhn, Hannah; Robatzek, Silke; Van Esse, H Peter; Sanders, Dale; Oldroyd, Giles; Martin, Cathie; Field, Rob; O'Connor, Sarah; Fox, Samantha; Wulff, Brande; et al (2015). Standards for plant synthetic biology: a common syntax for exchange of DNA parts. New Phytologist, 208(1):13-19.
Boisson-Dernier, Aurélien; Franck, Christina Maria; Lituiev, Dmytro S; Grossniklaus, Ueli (2015). Receptor-like cytoplasmic kinase MARIS functions downstream of CrRLK1L-dependent signaling during tip growth. Proceedings of the National Academy of Sciences of the United States of America, 112(39):12211-12216.
Rickett, Lydia M; Pullen, Nick; Hartley, Matthew; Zipfel, Cyril; Kamoun, Sophien; Baranyi, József; Morris, Richard J (2015). Incorporating prior knowledge improves detection of differences in bacterial growth rate. BMC Systems Biology, 9:60.
Süssenbacher, Iris; Kreutz, Christoph R; Christ, Bastien; Hörtensteiner, Stefan; Kräutler, Bernhard (2015). Hydroxymethylated Dioxobilins in Senescent Arabidopsis thaliana Leaves: Sign of a Puzzling Biosynthetic Intermezzo of Chlorophyll Breakdown. Chemistry - A European Journal, 21(33):11664-11670.
Kadota, Yasuhiro; Shirasu, Ken; Zipfel, Cyril (2015). Regulation of the NADPH Oxidase RBOHD During Plant Immunity. Plant & Cell Physiology, 56(8):1472-1480.
Xu, Haoxing; Martinoia, Enrico; Szabo, Ildiko (2015). Organellar channels and transporters. Cell Calcium, 58(1):1-10.
Monaghan, Jacqueline; Matschi, Susanne; Romeis, Tina; Zipfel, Cyril (2015). The calcium-dependent protein kinase CPK28 negatively regulates the BIK1-mediated PAMP-induced calcium burst. Plant signaling & behavior, 10(5):e1018497.
Lambers, Hans; Martinoia, Enrico; Renton, Michael (2015). Plant adaptations to severely phosphorus-impoverished soils. Current Opinion in Plant Biology, 25:23-31.
Plaza, Sonia; Weber, Johann; Pajonk, Simone; Thomas, Jérôme; Talke, Ina N; Schellenberg, Maja; Pradervand, Sylvain; Burla, Bo; Geisler, Markus; Martinoia, Enrico; Krämer, Ute (2015). Wounding of Arabidopsis halleri leaves enhances cadmium accumulation that acts as a defense against herbivory. Biometals, 28(3):521-528.
Guyer, Luzia. Characterization of Dephytylation and Dechelation, Two Early Steps of Chlorophyll Breakdown in Leaves and Fruits. 2015, University of Zurich, Faculty of Science.
Schmid, Marc W. Genome-Scale Quantitative Biology of Arabidopsis thaliana. 2015, University of Zurich, Faculty of Science.
Macho, Alberto P; Lozano-Durán, Rosa; Zipfel, Cyril (2015). Importance of tyrosine phosphorylation in receptor kinase complexes. Trends in Plant Science, 20(5):269-272.
Suzuki, Mami; Nakabayashi, Ryo; Ogata, Yoshiyuki; Sakurai, Nozomu; Tokimatsu, Toshiaki; Goto, Susumu; Suzuki, Makoto; Jasinski, Michal; Martinoia, Enrico; Otagaki, Shungo; Matsumoto, Shogo; Saito, Kazuki; Shiratake, Katsuhiro (2015). Multiomics in grape berry skin revealed specific induction of the stilbene synthetic pathway by ultraviolet-C irradiation. Plant Physiology, 168(1):47-59.
Singh, Amit Kumar; Bashir, Tufail; Sailer, Christian; Gurumoorthy, Viswanathan; Ramakrishnan, Anantha Maharasi; Dhanapal, Shanmuhapreya; Grossniklaus, Ueli; Baskar, Ramamurthy (2015). Parental age affects somatic mutation rates in the progeny of flowering plants. Plant Physiology, 168(1):247-257.
Couto, Daniel; Stransfeld, Lena; Arruabarrena, Ana; Zipfel, Cyril; Lozano-Durán, Rosa (2015). Broad application of a simple and affordable protocol for isolating plant RNA. BMC Research Notes, 8(1):154.
Schoonbeek, Henk‐jan; Wang, Hsi‐Hua; Stefanato, Francesca L; Craze, Melanie; Bowden, Sarah; Wallington, Emma; Zipfel, Cyril; Ridout, Christopher J (2015). Arabidopsis EF‐Tu receptor enhances bacterial disease resistance in transgenic wheat. New Phytologist, 206(2):606-613.
Lindner, Heike; Kessler, Sharon A; Müller, Lena M; Shimosato-Asano, Hiroko; Boisson-Dernier, Aurélien; Grossniklaus, Ueli (2015). TURAN and EVAN mediate pollen tube reception in Arabidopsis Synergids through protein glycosylation. PLoS Biology, 13(4):e1002139.
Schwessinger, Benjamin; Bahar, Ofir; Thomas, Nicolas; Holton, Nicolas; Nekrasov, Vladimir; Ruan, Deling; Canlas, Patrick E; Daudi, Arsalan; Petzold, Christopher J; Singan, Vasanth R; Kuo, Rita; Chovatia, Mansi; Daum, Christopher; Heazlewood, Joshua L; Zipfel, Cyril; Ronald, Pamela C (2015). Transgenic Expression of the Dicotyledonous Pattern Recognition Receptor EFR in Rice Leads to Ligand-Dependent Activation of Defense Responses. PLoS Pathogens, 11(3):e1004809.
Mathew, Anugraha. Iron transport strategies of the genus Burkholderia. 2015, University of Zurich, Faculty of Science.
Sasse, Joëlle; Simon, Sibu; Gübeli, Christian; Liu, Guo-Wei; Cheng, Xi; Friml, Jiří; Bouwmeester, Harro; Martinoia, Enrico; Borghi, Lorenzo (2015). Asymmetric localizations of the ABC transporter PaPDR1 trace paths of directional strigolactone transport. Current Biology, 25(5):647-655.
Hu, Xueyun; Makita, Satoru; Schelbert, Silvia; Sano, Shinsuke; Ochiai, Masanori; Tsuchiya, Tohru; Hasegawa, Shigeaki F; Hörtensteiner, Stefan; Tanaka, Ayumi; Tanaka, Ryouichi (2015). Reexamination of chlorophyllase function implies its involvement in defense against chewing herbivores. Plant Physiology, 167(3):660-670.
Eisenach, Cornelia; Francisco, Rita; Martinoia, Enrico (2015). Plant vacuoles. Current Biology, 25(4):R136-R137.
Macho, Alberto P; Zipfel, Cyril (2015). Targeting of plant pattern recognition receptor-triggered immunity by bacterial type-III secretion system effectors. Current Opinion in Microbiology, 23:14-22.
Holton, Nicholas; Nekrasov, Vladimir; Ronald, Pamela C; Zipfel, Cyril (2015). The Phylogenetically-Related Pattern Recognition Receptors EFR and XA21 Recruit Similar Immune Signaling Components in Monocots and Dicots. PLoS Pathogens, 11(1):e1004602.
Schmidt, Anja; Schmid, Marc W; Grossniklaus, Ueli (2015). Plant germline formation: common concepts and developmental flexibility in sexual and asexual reproduction. Development, 142(2):229-241.
Lozano-Durán, Rosa; Zipfel, Cyril (2015). Trade-off between growth and immunity: role of brassinosteroids. Trends in Plant Science, 20(1):12-19.
Rutowicz, Kinga; Puzio, Marcin; Halibart-Puzio, Joanna; et al (2015). A specialized histone H1 variant is required for adaptive responses to complex abiotic stress and related DNA methylation in Arabidopsis. Plant Physiology, 169(3):2080-2101.
Kang, Joohyun; Yim, Sojeong; Choi, Hyunju; Kim, Areum; Lee, Keun Pyo; Lopez-Molina, Luis; Martinoia, Enrico; Lee, Youngsook (2015). Abscisic acid transporters cooperate to control seed germination. Nature Communications, 6:8113.
Draeger, Christian; Ndinyanka Fabrice, Tohnyui; Gineau, Emilie; Mouille, Grégory; Kuhn, Benjamin M; Moller, Isabel; Abdou, Marie-Therese; Frey, Beat; Pauly, Markus; Bacic, Antony; Ringli, Christoph (2015). Arabidopsis leucine-rich repeat extensin (LRX) proteins modify cell wall composition and influence plant growth. BMC Plant Biology, 15(155):online.
Takeuchi, Yayoi; Chaffron, Samuel; Salcher, Michaela M; Shimizu-Inatsugi, Rie; Kobayashi, Masaki J; Diway, Bibian; von Mering, Christian; Pernthaler, Jakob; Shimizu, Kentaro K (2015). Bacterial diversity and composition in the fluid of pitcher plants of the genus Nepenthes. Systematic and Applied Microbiology, 38(5):330-339.
Kümmerli, Rolf (2015). Cheat invasion causes bacterial trait loss in lung infections. Proceedings of the National Academy of Sciences of the United States of America, 112(34):10577-10578.
Baroux, Célia; Autran, Daphné (2015). Chromatin dynamics during cellular differentiation in the female reproductive lineage of flowering plants. The Plant Journal, 83(1):160-176.
She, Wenjing; Baroux, Célia (2015). Chromatin dynamics in pollen mother cells underpin a common scenario at the somatic-to-reproductive fate transition of both the male and female lineages in Arabidopsis. Frontiers in Plant Science, 6:294.
Baroux, Célia. Chromatin dynamics in sexual plant reproduction. 2015, University of Zurich, Faculty of Science.
Kümmerli, Rolf; Santorelli, L A; Granato, E T; Dumas, Z; Dobay, A; Griffin, A S; West, S A (2015). Co-evolutionary dynamics between public good producers and cheats in the bacterium Pseudomonas aeruginosa. Journal of Evolutionary Biology, 28(12):2264-2274.
Coci, Manuela; Odermatt, Nina; Salcher, Michaela M; Pernthaler, Jakob; Corno, Gianluca (2015). Ecology and distribution of thaumarchaea in the deep hypolimnion of Lake Maggiore. Archaea, 2015:590434.
Stockenhuber, Reinhold; Zoller, Stefan; Shimizu-Inatsugi, Rie; Gugerli, Felix; Shimizu, Kentaro K; Widmer, Alex; Fischer, Martin C (2015). Efficient detection of novel nuclear markers for brassicaceae by transcriptome sequencing. PLoS ONE, 10(6):e0128181.
Amselem, Joelle; Vigouroux, Marielle; Oberhaensli, Simone; Brown, James K M; Bindschedler, Laurence V; Skamnioti, Pari; Wicker, Thomas; Spanu, Pietro D; Quesneville, Hadi; Sacristán, Soledad (2015). Evolution of the EKA family of powdery mildew avirulence-effector genes from the ORF 1 of a LINE retrotransposon. BMC Genomics, 16(917):online.
Pourkheirandish, Mohammad; Hensel, Goetz; Kilian, Benjamin; Senthil, Natesan; Chen, Guoxiong; Sameri, Mohammad; Azhaguvel, Perumal; Sakuma, Shun; Dhanagond, Sidram; Sharma, Rajiv; Mascher, Martin; Himmelbach, Axel; Gottwald, Sven; Nair, Sudha K; Tagiri, Akemi; Yukuhiro, Fumiko; Nagamura, Yoshiaki; Kanamori, Hiroyuki; Matsumoto, Takashi; Willcox, George; Middleton, Christopher P; Wicker, Thomas; Walther, Alexander; Waugh, Robbie; Fincher, Geoffrey B; Stein, Nils; Kumlehn, Jochen; Sato, Kazuhiro; Komatsuda, Takao (2015). Evolution of the Grain Dispersal System in Barley. Cell, 162(3):527-539.
Ross-Gillespie, A; Dumas, Z; Kümmerli, Rolf (2015). Evolutionary dynamics of interlinked public goods traits: an experimental study of siderophore production in Pseudomonas aeruginosa. Journal of Evolutionary Biology, 28(1):29-39.
Chhuneja, Parveen; Yadav, Bharat; Stirnweis, Daniel; Hurni, Severine; Kaur, Satinder; Elkot, Ahmed Fawzy; Keller, Beat; Wicker, Thomas; Sehgal, Sunish; Gill, Bikram S; Singh, Kuldeep (2015). Fine mapping of powdery mildew resistance genes PmTb7A.1 and PmTb7A.2 in Triticum boeoticum (Boiss.) using the shotgun sequence assembly of chromosome 7AL. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 128(10):2099-2111.
Neuenschwander, Stefan M; Salcher, Michaela M; Pernthaler, Jakob (2015). Fluorescence in situ hybridization and sequential catalyzed reporter deposition (2C-FISH) for the flow cytometric sorting of freshwater ultramicrobacteria. Frontiers in Microbiology, 6:247.
Parlange, Francis; Roffler, Stefan; Menardo, Fabrizio; Ben-David, Roi; Bourras, Salim; McNally, Kaitlin E; Oberhaensli, Simone; Stirnweis, Daniel; Buchmann, Gabriele; Wicker, Thomas; Keller, Beat (2015). Genetic and molecular characterization of a locus involved in avirulence of Blumeria graminis f. sp. tritici on wheat Pm3 resistance alleles. Fungal Genetics and Biology, 82:181-192.
Roffler, Stefan; Wicker, Thomas (2015). Genome-wide comparison of Asian and African rice reveals high recent activity of DNA transposons. Mobile DNA, 6(8):online.
Schmid, Marc W; Grob, Stefan; Grossniklaus, Ueli (2015). HiCdat: a fast and easy-to-use Hi-C data analysis tool. BMC Bioinformatics, 16:277.
Dubern, Jean-Frédéric; Cigana, Cristina; De Simone, Maura; Lazenby, James; Juhas, Mario; Schwager, Stephan; Bianconi, Irene; Döring, Gerd; Eberl, Leo; Williams, Paul; Bragonzi, Alessandra; Cámara, Miguel (2015). Integrated whole-genome screening forPseudomonas aeruginosavirulence genes using multiple disease models reveals that pathogenicity is host specific. Environmental Microbiology, 17(11):4379-4393.
Salcher, Michaela M; Ewert, Claudia; Šimek, Karel; Kasalický, Vojtěch; Posch, Thomas (2015). Interspecific competition and protistan grazing affect the coexistence of freshwater betaproteobacterial strains. FEMS Microbiology Ecology, 92(2):fiv156.
Sieber, Simon; Carlier, Aurélien; Neuburger, Markus; Grabenweger, Giselher; Eberl, Leo; Gademann, Karl (2015). Isolation and total synthesis of kirkamide, an aminocyclitol from an obligate leaf nodule symbiont. Angewandte Chemie Internationale Edition, 54(27):7968-7970.
Vermeer, Joop E M; Geldner, Niko (2015). Lateral root initiation in Arabidopsis thaliana: a force awakens. F1000 Prime Reports, 7:32.
Elkot, Ahmed Fawzy Abdelnaby; Chhuneja, Parveen; Kaur, Satinder; Saluja, Manny; Keller, Beat; Singh, Kuldeep (2015). Marker assisted transfer of two powdery mildew resistance genes PmTb7A.1 and PmTb7A.2 from Triticum boeoticum (Boiss.) to Triticum aestivum (L.). PLoS ONE, 10(6):e0128297.
Vogler, Hannes; Felekis, Dimitrios; Nelson, Bradley; Grossniklaus, Ueli (2015). Measuring the mechanical properties of plant cell walls. Plants, 4(2):167-182.
Bourras, Salim; McNally, Kaitlin Elyse; Ben-David, Roi; Parlange, Francis; Roffler, Stefan; Praz, Coraline Rosalie; Oberhaensli, Simone; Menardo, Fabrizio; Stirnweis, Daniel; Frenkel, Zeev; Schaefer, Luisa Katharina; Flückiger, Simon; Treier, Georges; Herren, Gerhard; Korol, Abraham B; Wicker, Thomas; Keller, Beat (2015). Multiple Avirulence Loci and Allele-Specific Effector Recognition Control thePm3Race-Specific Resistance of Wheat to Powdery Mildew. Plant Cell, 27(10):2991-3012.
Sato, E M; Hijazi, H; Bennett, M J; Vissenberg, K; Swarup, R (2015). New insights into root gravitropic signalling. Journal of Experimental Botany, 66(8):2155-2165.
Leroux, Christelle; Bouton, Sophie; Kiefer-Meyer, Marie-Christine; Fabrice, Tohnyui Ndinyanka; Mareck, Alain; Guénin, Stéphanie; Fournet, Françoise; Ringli, Christoph; Pelloux, Jérôme; Driouich, Azeddine; Lerouge, Patrice; Lehner, Arnaud; Mollet, Jean-Claude (2015). Pectin Methylesterase48 Is Involved in Arabidopsis Pollen Grain Germination. Plant Physiology, 167(2):367-380.
Hunziker, Lukas; Bönisch, Denise; Groenhagen, Ulrike; Bailly, Aurélien; Schulz, Stefan; Weisskopf, Laure (2015). Pseudomonas Strains Naturally Associated with Potato Plants Produce Volatiles with High Potential for Inhibition of Phytophthora infestans. Applied and Environmental Microbiology, 81(3):821-830.
Cárcamo-Oyarce, Gerardo; Lumjiaktase, Putthapoom; Kümmerli, Rolf; Eberl, Leo (2015). Quorum sensing triggers the stochastic escape of individual cells from Pseudomonas putida biofilms. Nature Communications, 6:5945.
Schmid, Marc W; Grossniklaus, Ueli (2015). Rcount: simple and flexible RNA-Seq read counting. Bioinformatics, 31(3):436-437.
Felekis, D; Vogler, H; Mecja, G; Muntwyler, S; Nestorova, A; Huang, T; Sakar, M S; Grossniklaus, U; Nelson, B J (2015). Real-time automated characterization of 3D morphology and mechanics of developing plant cells. International Journal of Robotics Research, 34(8):1136-1146.
Wicker, Thomas; Wing, Rod A; Schubert, Ingo (2015). Recurrent sequence exchange between homeologous grass chromosomes. The Plant Journal, 84(4):747-759.
Copetti, Dario; Zhang, Jianwei; El Baidouri, Moaine; Gao, Dongying; Wang, Jun; Barghini, Elena; Cossu, Rosa M; Angelova, Angelina; Maldonado L, Carlos E; Roffler, Stefan; Ohyanagi, Hajime; Wicker, Thomas; Fan, Chuanzhu; Zuccolo, Andrea; Chen, Mingsheng; Costa de Oliveira, Antonio; Han, Bin; Henry, Robert; Hsing, Yue-ie; Kurata, Nori; Wang, Wen; Jackson, Scott A; Panaud, Olivier; Wing, Rod A (2015). RiTE database: a resource database for genus-wide rice genomics and evolutionary biology. BMC Genomics, 16(538):online.
Chumak, Nina; Mosiolek, Magdalena; Schoft, Vera K (2015). Sample Preparation and Fractionation of Arabidopsis thaliana Sperm and Vegetative Cell Nuclei by FACS. Bio-protocol, 5(8):e1456.
Garneau, Marie-Ève; Posch, Thomas; Pernthaler, Jakob (2015). Seasonal patterns of microcystin-producing and non-producing Planktothrix rubescens genotypes in a deep pre-alpine lake. Harmful Algae, 50:21-31.
Cárcamo Oyarce, Gerardo. Social behaviors of Pseudomonas putida IsoF. 2015, University of Zurich, Faculty of Science.
Guyer, Anouk; De Vrieze, Mout; Bönisch, Denise; Gloor, Ramona; Musa, Tomke; Bodenhausen, Natacha; Bailly, Aurélien; Weisskopf, Laure (2015). The anti-phytophthora effect of selected potato-associated pseudomonas strains: from the laboratory to the field. Frontiers in Microbiology, 6:1309.
Salcher, Michaela M; Neuenschwander, Stefan M; Posch, Thomas; Pernthaler, Jakob (2015). The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign. The ISME journal, 9(11):2442-2453.
Quijano, Carolina Diaz; Brunner, Susanne; Keller, Beat; Gruissem, Wilhelm; Sautter, Christof (2015). The environment exerts a greater influence than the transgene on the transcriptome of field-grown wheat expressing the Pm3b allele. Transgenic research, 24(1):87-97.
Schmid, Marc W; Schmidt, Anja; Grossniklaus, Ueli (2015). The female gametophyte: an emerging model for cell type-specific systems biology in plant development. Frontiers in Plant Science, 6:907.
Hurni, Severine; Scheuermann, Daniela; Krattinger, Simon G; Kessel, Bettina; Wicker, Thomas; Herren, Gerhard; Fitze, Mirjam N; Breen, James; Presterl, Thomas; Ouzunova, Milena; Keller, Beat (2015). The maize disease resistance geneHtn1against northern corn leaf blight encodes a wall-associated receptor-like kinase. Proceedings of the National Academy of Sciences of the United States of America, 112(28):8780-8785.
Chauhan, Harsh; Boni, Rainer; Bucher, Rahel; Kuhn, Benjamin; Buchmann, Gabriele; Sucher, Justine; Selter, Liselotte L; Hensel, Goetz; Kumlehn, Jochen; Bigler, Laurent; Glauser, Gaëtan; Wicker, Thomas; Krattinger, Simon G; Keller, Beat (2015). The wheat resistance gene Lr34 results in the constitutive induction of multiple defense pathways in transgenic barley. The Plant Journal, 84(1):202-215.
De Vrieze, Mout; Pandey, Piyush; Bucheli, Thomas D; Varadarajan, Adithi R; Ahrens, Christian H; Weisskopf, Laure; Bailly, Aurélien (2015). Volatile organic compounds from native potato-associated pseudomonas as potential anti-oomycete agents. Frontiers in Microbiology, 6:1295.
Honegger, R (2015). Vom Zauber einer verborgenen Schatzkammer. Zürich, Switzerland: Universität Zürich, Institut für Pflanzenbiologie.
Lardi, Martina; Aguilar, Claudio; Pedrioli, Alessandro; Omasits, Ulrich; Suppiger, Angela; Cárcamo-Oyarce, Gerardo; Schmid, Nadine; Ahrens, Christian H; Eberl, Leo; Pessi, Gabriella (2015). σ54-Dependent Response to Nitrogen Limitation and Virulence in Burkholderia cenocepacia Strain H111. Applied and Environmental Microbiology, 81(12):4077-4089.
Etherington, Graham J; Monaghan, Jacqueline; Zipfel, Cyril; Maclean, Dan (2014). Mapping mutations in plant genomes with the user-friendly web application CandiSNP. Plant Methods, 10(1):41.
Kessler, S A; Lindner, H; Jones, D S; Grossniklaus, U (2014). Functional analysis of related CrRLK1L receptor-like kinases in pollen tube reception. EMBO Reports, 16(1):107-115.
Dudnik, Alexey; Dudler, Robert (2014). Virulence determinants of Pseudomonas syringae strains isolated from grasses in the context of a small type III effector repertoire. BMC Microbiology, 14:304.
Kohler, Esther. Structural characterization, bioactivity and biodegradation of cyanobacterial toxins. 2014, University of Zurich, Faculty of Science.
Kümmerli, Rolf; Schiessl, Konstanze T; Waldvogel, Tuija; McNeill, Kristopher; Ackermann, Martin (2014). Habitat structure and the evolution of diffusible siderophores in bacteria. Ecology Letters, 17(12):1536-1544.
Bailly, Aurélien; Groenhagen, Ulrike; Schulz, Stefan; Geisler, Markus; Eberl, Leo; Weisskopf, Laure (2014). The inter-kingdom volatile signal indole promotes root development by interfering with auxin signalling. The Plant Journal, 80(5):758-771.
Monaghan, Jacqueline; Matschi, Susanne; Shorinola, Oluwaseyi; Rovenich, Hanna; Matei, Alexandra; Segonzac, Cécile; Malinovsky, Frederikke Gro; Rathjen, John P; Maclean, Dan; Romeis, Tina; Zipfel, Cyril (2014). The Calcium-Dependent Protein Kinase CPK28 Buffers Plant Immunity and Regulates BIK1 Turnover. Cell Host & Microbe, 16(5):605-615.
Mérai, Zsuzsanna; Chumak, Nina; García-Aguilar, Marcelina; Hsieh, Tzung-Fu; Nishimura, Toshiro; Schoft, Vera K; Bindics, János; Ślusarz, Lucyna; Arnoux, Stéphanie; Opravil, Susanne; Mechtler, Karl; Zilberman, Daniel; Fischer, Robert L; Tamaru, Hisashi (2014). The AAA-ATPase molecular chaperone Cdc48/p97 disassembles sumoylated centromeres, decondenses heterochromatin, and activates ribosomal RNA genes. Proceedings of the National Academy of Sciences of the United States of America, 111(45):16166-16171.
Tavor-Deslex, Deborah. Cytokinin Function in the Developing Root Meristem of Arabidopsis thaliana Embryos. 2014, University of Zurich, Faculty of Science.
Song, Won-Yong; Yamaki, Tomohiro; Yamaji, Naoki; Ko, Donghwi; Jung, Ki-Hong; Fujii-Kashino, Miho; An, Gynheung; Martinoia, Enrico; Lee, Youngsook; Feng Ma, Jian (2014). A rice ABC transporter, OsABCC1, reduces arsenic accumulation in the grain. Proceedings of the National Academy of Sciences of the United States of America, 111(44):15699-15704.
Sakuraba, Yasuhito; Kim, Dami; Kim, Ye-Sol; Hörtensteiner, Stefan; Paek, Nam-Chon (2014). Arabidopsis STAYGREEN-LIKE (SGRL) promotes abiotic stress-induced leaf yellowing during vegetative growth. FEBS letters, 588(21):3830-3837.
Grossniklaus, Ueli; Paro, Renato (2014). Transcriptional silencing by polycomb-group proteins. Cold Spring Harbor Perspectives in Biology, 6(11):a019331.
Kümmerli, Rolf; Ross-Gillespie, Adin (2014). Explaining the sociobiology of pyoverdin producingpseudomonas: a comment on ZHANG AND RAINEY (2013). Evolution, 68(11):3337-3343.
Christ, Bastien; Egert, Aurélie; Süssenbacher, Iris; Kräutler, Bernhard; Bartels, Dorothea; Peters, Shaun; Hörtensteiner, Stefan (2014). Water deficit induces chlorophyll degradation via the 'PAO/phyllobilin' pathway in leaves of homoio- (Craterostigma pumilum) and poikilochlorophyllous (Xerophyta viscosa) resurrection plants. Plant, Cell & Environment, 37(11):2521-2531.
Amann, Ruth; Wyder, Stefan; Slavotinek, Anne M; Trueb, Beat (2014). The FgfrL1 receptor is required for development of slow muscle fibers. Developmental Biology, 394(2):228-241.
Zábrady, Matej; Hrdinová, Vendula; Müller, Bruno; Conrad, Udo; Hejátko, Jan; Janda, Lubomír (2014). Targeted in vivo inhibition of specific protein–protein interactions using recombinant antibodies. PLoS ONE, 9(10):e109875.
Stopnisek, Nejc. Ecology of the Genus Burkholderia in the Soil. 2014, University of Zurich, Faculty of Science.
Müller, Lena Maria. The Role of Pollen Tube Reception in Reproductive Isolation. 2014, University of Zurich, Faculty of Science.
Vaddepalli, P; Herrmann, A; Fulton, L; Oelschner, M; Hillmer, S; Stratil, T F; Fastner, A; Hammes, U Z; Ott, T; Robinson, D G; Schneitz, K (2014). The C2-domain protein QUIRKY and the receptor-like kinase STRUBBELIG localize to plasmodesmata and mediate tissue morphogenesis in Arabidopsis thaliana. Development, 141(21):4139-4148.
Segonzac, Cécile; Macho, Alberto P; Sanmartín, Maite; Ntoukakis, Vardis; Sánchez‐Serrano, José Juan; Zipfel, Cyril (2014). Negative control of BAK1 by protein phosphatase 2A during plant innate immunity. The EMBO Journal, 33(18):2069-2079.
Zhang, Jingbo; Martinoia, Enrico; De Angeli, Alexis (2014). Cytosolic nucleotides block and regulate the Arabidopsis vacuolar anion channel AtALMT9. Journal of Biological Chemistry, 289(37):25581-25589.
Grob, Stefan; Schmid, Marc W; Grossniklaus, Ueli (2014). Hi-C analysis in Arabidopsis identifies the KNOT, a structure with similarities to the flamenco locus of Drosophila. Molecular Cell, 55(5):678-693.
Zhang, Wei; Liu, Tianqi; Ren, Guodong; Hörtensteiner, Stefan; Zhou, Yongming; Cahoon, Edgar B; Zhang, Chunyu (2014). Chlorophyll degradation: the tocopherol biosynthesis-related phytol hydrolase in Arabidopsis seeds is still missing. Plant Physiology, 166(1):70-79.
Guyer, Luzia; Schelbert Hofstetter, Silvia; Christ, Bastien; Lira, Bruno Silvestre; Rossi, Magdalena; Hörtensteiner, Stefan (2014). Different mechanisms are responsible for chlorophyll dephytylation during fruit ripening and leaf senescence in tomato. Plant Physiology, 166(1):44-56.
Sakuraba, Yasuhito; Park, So-Yon; Kim, Ye-Sol; Wang, Seung-Hyun; Yoo, Soo-Cheul; Hörtensteiner, Stefan; Paek, Nam-Chon (2014). Arabidopsis STAY-GREEN2 is a negative regulator of chlorophyll degradation during leaf senescence. Molecular Plant, 7(8):1288-302.
She, Wenjing; Baroux, Célia (2014). Chromatin dynamics during plant sexual reproduction. Frontiers in Plant Science:5:354.
Hurni, Severine; Brunner, Susanne; Stirnweis, Daniel; Herren, Gerhard; Peditto, David; McIntosh, Robert A; Keller, Beat (2014). The powdery mildew resistance gene Pm8 derived from rye is suppressed by its wheat ortholog Pm3. The Plant Journal, 79(6):904-913.
Pereira, A M; Masiero, S; Nobre, M S; Costa, M L; Solis, M-T; Testillano, P S; Sprunck, S; Coimbra, S (2014). Differential expression patterns of arabinogalactan proteins in Arabidopsis thaliana reproductive tissues. Journal of Experimental Botany, 65(18):5459-5471.
Honegger, R. Faszinierende Kopfweiden. In: Briefe aus dem Botanischen Garten Zürich, 1 July 2014, n/a.
Grob, Hanne. AtMRP5/AtABCC5 - An Inositolhexakisphosphate Transporter Interacts with Hookless 1, a Protein Involved in Ethylene Signaling. 2014, University of Zurich, Faculty of Science.
Sakuraba, Yasuhito; Lee, Sang-Hwa; Kim, Ye-Sol; Park, Ohkmae K; Hörtensteiner, Stefan; Paek, Nam-Chon (2014). Delayed degradation of chlorophylls and photosynthetic proteins in Arabidopsis autophagy mutants during stress-induced leaf yellowing. Journal of Experimental Botany, 65(14):3915-3925.
Fazli, Mustafa; Almblad, Henrik; Rybtke, Morten Levin; Givskov, Michael; Eberl, Leo; Tolker-Nielsen, Tim (2014). Regulation of biofilm formation in Pseudomonasand Burkholderias pecies. Environmental Microbiology, 16(7):1961-1981.
Dobay, Akos; Bagheri, Homayoun C; Messina, Antonio; Kümmerli, Rolf; Rankin, Daniel J (2014). Interaction effects of cell diffusion, cell density and public goods properties on the evolution of cooperation in digital microbes. Journal of Evolutionary Biology, 27(9):1869-1877.
She, Wenjing; Grimanelli, Daniel; Baroux, Célia (2014). An efficient method for quantitative, single-cell analysis of chromatin modification and nuclear architecture in whole-mount ovules in arabidopsis. Journal of Visualized Experiments, (88):1-9.
Hurni, Severine. Molecular Analysis of the Orthologous Wheat and Rye Powdery Mildew Resistance Genes Pm3 and Pm8. 2014, University of Zurich, Faculty of Science.
Stirnweis, Daniel. Molecular and Functional Analysis of Resistance Expansion and Suppression for Alleles of the Powdery Mildew Resistance Gene Pm3 in Wheat. 2014, University of Zurich, Faculty of Science.
Schläpfer, Joëlle. Two Petunia hybrida ABCG Type Transporters: Characterization of a Strigolactone Exporter and of a Transporter Involved in Allocation of Sterol-‐Derived Compounds Important for Herbivore Defense. 2014, University of Zurich, Faculty of Science.
Eisenach, Cornelia; Baetz, Ulrike; Martinoia, Enrico (2014). Vacuolar proton pumping: more than the sum of its parts? Trends in Plant Science, 19(6):344-346.
Schmidt, Anja; Schmid, Marc W; Klostermeier, Ulrich C; Qi, Weihong; Guthörl, Daniela; Sailer, Christian; Waller, Manuel; Rosenstiel, Philip; Grossniklaus, Ueli (2014). Apomictic and sexual germline development differ with respect to cell cycle, transcriptional, hormonal and epigenetic regulation. PLoS Genetics, 10(7):e1004476.
Ko, Donghwi; Kang, Joohyun; Kiba, Takatoshi; Park, Jiyoung; Kojima, Mikiko; Do, Jihye; Kim, Kyung Yoon; Kwon, Mi; Endler, Anne; Song, Won-Yong; Martinoia, Enrico; Sakakibara, Hitoshi; Lee, Youngsook (2014). Arabidopsis ABCG14 is essential for the root-to-shoot translocation of cytokinin. Proceedings of the National Academy of Sciences of the United States of America, 111(19):7150-7155.
Ngo, Quy A; Vogler, Hannes; Lituiev, Dmytro S; Nestorova, Anna; Grossniklaus, Ueli (2014). A calcium dialog mediated by the FERONIA Signal transduction pathway controls plant sperm delivery. Developmental Cell, 29(4):491-500.
Shimizu, Kentaro K (2014). A Japanese PI in Switzerland. HFSP Matters, 4:8-9.
Grob, Stefan. On the Chromosomal Architecture of Arabidopsis thaliana. 2014, University of Zurich, Faculty of Science.
Song, Won-Yong; Mendoza-Cózatl, David G; Lee, Youngsook; Schroeder, Julian I; Ahn, Sang-Nag; Lee, Hyun-Sook; Wicker, Thomas; Martinoia, Enrico (2014). Phytochelatin-metal(loid) transport into vacuoles shows different substrate preferences in barley and Arabidopsis. Plant, Cell & Environment, 37(5):1192-1201.
Macho, Alberto P; Zipfel, Cyril (2014). Plant PRRs and the Activation of Innate Immune Signaling. Molecular Cell, 54(2):263-272.
Soyk, S; Šimkova, K; Zurcher, E; Luginbuhl, L; Brand, L H; Vaughan, C K; Wanke, D; Zeeman, S C (2014). The enzyme-like domain of arabidopsis nuclear β-amylases is critical for DNA sequence recognition and transcriptional activation. Plant Cell, 26(4):1746-1763.
Dudnik, Alexey; Bigler, Laurent; Dudler, Robert (2014). Production of Proteasome Inhibitor Syringolin A by the Endophyte Rhizobium sp Strain AP16. Applied and Environmental Microbiology, 80(12):3741-3748.
Lituiev, Dmytro S; Grossniklaus, Ueli (2014). Patterning of the angiosperm female gametophyte through the prism of theoretical paradigms. Biochemical Society Transactions, 42(2):332-339.
Koch, M; Delmotte, N; Ahrens, C H; Omasits, U; Schneider, K; Danza, F; Padhi, B; Murset, V; Braissant, O; Vorholt, J A; Hennecke, H; Pessi, G (2014). A Link between Arabinose Utilization and Oxalotrophy in Bradyrhizobium japonicum. Applied and Environmental Microbiology, 80(7):2094-2101.
She, Wenjing. Chromatin Reprogramming During the Somatic-to-Reproductive Cell Fate Transition in Plants. 2014, University of Zurich, Faculty of Science.
Simonini, Sara; Kater, Martin M (2014). Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance. Journal of Experimental Botany, 65(6):1455-1465.
Kadota, Yasuhiro; Sklenar, Jan; Derbyshire, Paul; Stransfeld, Lena; Asai, Shuta; Ntoukakis, Vardis; Jones, Jonathan DG; Shirasu, Ken; Menke, Frank; Jones, Alexandra; Zipfel, Cyril (2014). Direct Regulation of the NADPH Oxidase RBOHD by the PRR-Associated Kinase BIK1 during Plant Immunity. Molecular Cell, 54(1):43-55.
Carlier, A; Agnoli, K; Pessi, G; Suppiger, A; Jenul, C; Schmid, N; Tummler, B; Pinto-Carbó, Marta; Eberl, L (2014). Genome Sequence of Burkholderia cenocepacia H111, a Cystic Fibrosis Airway Isolate. Genome Announcements, 2(2):e00298-14.
Prince, David C; Drurey, Claire; Zipfel, Cyril; Hogenhout, Saskia A (2014). The Leucine-Rich Repeat Receptor-Like Kinase BRASSINOSTEROID INSENSITIVE1-ASSOCIATED KINASE1 and the Cytochrome P450 PHYTOALEXIN DEFICIENT3 Contribute to Innate Immunity to Aphids in Arabidopsis. Plant Physiology, 164(4):2207-2219.
Macho, Alberto P; Schwessinger, Benjamin; Ntoukakis, Vardis; Brutus, Alexandre; Segonzac, Cécile; Roy, Sonali; Kadota, Yasuhiro; Oh, Man-Ho; Sklenar, Jan; Derbyshire, Paul; Lozano-Durán, Rosa; Malinovsky, Frederikke Gro; Monaghan, Jacqueline; Menke, Frank L H; Huber, Steven C; He, Sheng Yang; Zipfel, Cyril (2014). A Bacterial Tyrosine Phosphatase Inhibits Plant Pattern Recognition Receptor Activation. Science, 343(6178):1509-1512.
Bashir, T; Sailer, C; Gerber, F; Loganathan, N; Bhoopalan, H; Eichenberger, C; Grossniklaus, U (2014). Hybridization alters spontaneous mutation rates in a parent-of-origin-dependent fashion in Arabidopsis. Plant Physiology, 165(1):424-437.
Pires, Nuno D (2014). Seed evolution: parental conflicts in a multi-generational household. BioMolecular Concepts, 5(1):71-86.
Nyati, Shyam; Scherrer, Sandra; Werth, Silke; Honegger, Rosmarie (2014). Green-algal photobiont diversity (Trebouxia spp.) in representatives of Teloschistaceae (Lecanoromycetes, lichen-forming ascomycetes). The Lichenologist, 46(02):189-212.
Malinovsky, Frederikke Gro; Batoux, Martine; Schwessinger, Benjamin; Youn, Ji Hyun; Stransfeld, Lena; Win, Joe; Kim, Seong-Ki; Zipfel, Cyril (2014). Antagonistic regulation of growth and immunity by the Arabidopsis basic helix-loop-helix transcription factor homolog of brassinosteroid enhanced expression2 interacting with increased leaf inclination1 binding bHLH1. Plant Physiology, 164(3):1443-1455.
Trost, Gerda; Vi, Son Lang; Czesnick, Hjördis; Lange, Peggy; Holton, Nick; Giavalisco, Patrick; Zipfel, Cyril; Kappel, Christian; Lenhard, Michael (2014). Arabidopsis poly(A) polymerase PAPS1 limits founder-cell recruitment to organ primordia and suppresses the salicylic acid-independent immune response downstream of EDS1/PAD4. The Plant Journal, 77(5):688-699.
Dudnik, Alexey. Functional Analysis of Syrbactin Synthetase-Like Gene Clusters in Photorhabdus luminescens and Rhizobium sp. and the Role of Syrbactins in Pseudomonas syringae Strains Colonizing Grass Species. 2014, University of Zurich, Faculty of Science.
Lloyd, Simon R; Schoonbeek, Henk-jan; Trick, Martin; Zipfel, Cyril; Ridout, Christopher J (2014). Methods to Study PAMP-Triggered Immunity in Brassica Species. Molecular Plant-Microbe Interactions, 27(3):286-295.
Trdá, Lucie; Fernandez, Olivier; Boutrot, Freddy; Héloir, Marie‐Claire; Kelloniemi, Jani; Daire, Xavier; Adrian, Marielle; Clément, Christophe; Zipfel, Cyril; Dorey, Stéphan; Poinssot, Benoit (2014). The grapevine flagellin receptor VvFLS2 differentially recognizes flagellin-derived epitopes from the endophytic growth-promoting bacterium Burkholderia phytofirmans and plant pathogenic bacteria. New Phytologist, 201(4):1371-1384.
Baetz, Ulrike; Martinoia, Enrico (2014). Root exudates: the hidden part of plant defense. Trends in Plant Science, 19(2):90-98.
Guo, Woei-Jiun; Nagy, Reka; Chen, Hsin-Yi; Pfrunder, Stefanie; Yu, Ya-Chi; Santelia, Diana; Frommer, Wolf B; Martinoia, Enrico (2014). SWEET17, a facilitative transporter, mediates fructose transport across the tonoplast of Arabidopsis roots and leaves. Plant Physiology, 164(2):777-789.
Süssenbacher, Iris; Christ, Bastien; Hörtensteiner, Stefan; Kräutler, Bernhard (2014). Hydroxymethylated phyllobilins: a puzzling new feature of the dioxobilin branch of chlorophyll breakdown. Chemistry - A European Journal, 20(1):87-92.
Jacquat, Christiane; Roger, I (2014). Fleurs des pharaons. Couleurs et parfums de milliers d’années. Archéologia:22-33.
Honegger, R. Kiwi und andere Strahlengriffelgewächse. In: Briefe aus dem Botanischen Garten Zürich, 1 January 2014.
Schmid, Nadine. Cell-to-Cell Signaling in Burkholderia cenocepacia H111: An Entangled Web of Chemical Languages. 2014, University of Zurich, Faculty of Science.
Zhang, Jingbo. Functional and Structural Characterization of the Vacuolar Anion Channels AtALMT9 and AtALMT4 in Arabidopsis thaliana. 2014, University of Zurich, Faculty of Science.
Kritsas, K. Identification and Characterization of a New Class of Highly Conserved Non-Coding Sequences in Plants. 2014, University of Zurich, Faculty of Science.
Shimizu, Kentaro K (2014). Network merging analysis of duplicate genome function in recently hybridized species. In: Awardees of Human Frontier Science Program. Tokyo: s.n., 26-27.
Kost, Thomas; Stopnisek, Nejc; Agnoli, Kirsty; Eberl, Leo; Weisskopf, Laure (2014). Oxalotrophy, a widespread trait of plant-associated Burkholderia species, is involved in successful root colonization of lupin and maize by Burkholderia phytofirmans. Frontiers in Microbiology:4:421.
Ross-Gillespie, Adin; Kümmerli, Rolf (2014). 'Evolution-Proofing' antibacterials. Evolution, Medicine, and Public Health, 2014(1):134-135.
Diaz-de-Quijano, Daniel; Palacios, Pilar; Horňák, Karel; Felip, Marisol (2014). 3D restoration microscopy improves quantification of enzyme-labeled fluorescence-based single-cell phosphatase activity in plankton. Cytometry. Part A, 85(10):841-853.
International Wheat Genome Sequencing Consortium (IWGSC); Mayer, K F X; Rogers, J; Dole el, J; et al; Wincker, P; Keller, B; Praud, S (2014). A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome. Science, 345(6194):1251788.
Horňák, Karel; Pernthaler, Jakob (2014). A novel ion-exclusion chromatography–mass spectrometry method to measure concentrations and cycling rates of carbohydrates and amino sugars in freshwaters. Journal of Chromatography. A, 1365:115-123.
Mathew, Anugraha; Eberl, Leo; Carlier, Aurelien L (2014). A novel siderophore-independent strategy of iron uptake in the genus Burkholderia. Molecular Microbiology, 91(4):805-820.
Song, Won-Yong; Park, Jiyoung; Eisenach, Cornelia; Maeshima, Masayoshi; Lee, Youngsook; Martinoia, Enrico (2014). ABC Transporters and Heavy Metals. In: Geisler, Markus. Plant ABC Transporters. Cham, Switzerland: Springer International Publishing Switzerland, 1-17.
Buchmann, Jan P; Löytynoja, Ari; Wicker, Thomas; Schulman, Alan H (2014). Analysis of CACTA transposases reveals intron loss as major factor influencing their exon/intron structure in monocotyledonous and eudicotyledonous hosts. Mobile DNA, 5:24.
Zupo, Valerio; Jüttner, Friedrich; Maibam, Chingoileima; Butera, Emanuela; Blom, Judith (2014). Apoptogenic Metabolites in Fractions of the Benthic Diatom Cocconeis scutellum parva. Marine Drugs, 12(1):547-567.
Callieri, Cristiana; Coci, Manuela; Eckert, Ester M; Salcher, Michaela M; Bertoni, Roberto (2014). Archaea and Bacteria in deep lake hypolimnion: In situ dark inorganic carbon uptake. Journal of Limnology, 73(1):31-38.
Shabarova, Tanja; Villiger, Jörg; Morenkov, Oleg; Niggemann, Jutta; Dittmar, Thorsten; Pernthaler, Jakob (2014). Bacterial community structure and dissolved organic matter in repeatedly flooded subsurface karst water pools. FEMS Microbiology Ecology, 89(1):111-126.
Eckert, Ester M; Pernthaler, Jakob (2014). Bacterial epibionts of Daphnia: A potential route for the transfer of dissolved organic carbon in freshwater food webs. The ISME journal, 8(9):1808-1819.
Portmann, Cyril; Sieber, Simon; Wirthensohn, Silvan; Blom, Judith F; Da Silva, Laeticia; Baudat, Emilie; Kaiser, Marcel; Brun, Reto; Gademann, Karl (2014). Balgacyclamides, Antiplasmodial Heterocyclic Peptides fromMicrocystis aeruguinosaEAWAG 251. Journal of natural products, 77(3):557-562.
Kohler, Esther; Villiger, Jörg; Posch, Thomas; Derlon, Nicolas; Shabarova, Tanja; Morgenroth, Eberhard; Pernthaler, Jakob; Blom, Judith F (2014). Biodegradation of microcystins during gravity-driven membrane (GDM) ultrafiltration. PLoS ONE, 9(11):e111794.
Wiese, A; Jacquat, C (2014). Blumenreich. Wiedergeburt in Pharaonengräbern. Basel, Antikenmuseum Basel und Sammlung Ludwig. Basel: Antikenmuseum Basel und Sammlung Ludwig.
Ross-Gillespie, Adin; Kümmerli, Rolf (2014). Collective decision-making in microbes. Frontiers in Microbiology:5:54.
Pires, Nuno D; Grossniklaus, Ueli (2014). Different yet similar: evolution of imprinting in flowering plants and mammals. F1000 Prime Reports, 6:63.
David-Elbiali, Mireille; Falquet, Christian; Nitu, Claudia; Studer, Jacqueline; Glauser, David; Jacquat, Christiane; Katona Serneels, Ildiko; Serneels, Vincent (2014). Fosses rituelles de l’âge du Bronze au pied du Jura: pratiques sacrificielles à Onnens / Corcelles-près-Concise – les Côtes (canton de Vaud, Suisse) et contribution à la définition de la phase BzD1 en Suisse occidentale. Cahiers d'archéologie romande (CAR), 147:243-260.
Ross-Gillespie, Adin; Weigert, M; Brown, S P; Kümmerli, Rolf (2014). Gallium-mediated siderophore quenching as an evolutionarily robust antibacterial treatment. Evolution, Medicine, and Public Health, 2014(1):18-29.
Sedeek, Khalid E M; Scopece, Giovanni; Staedler, Yannick M; Schönenberger, Jürg; Cozzolino, Salvatore; Schiestl, Florian P; Schlüter, Philipp M (2014). Genic rather than genome-wide differences between sexually deceptive Ophrys orchids with different pollinators. Molecular Ecology, 23(24):6192-6205.
Dudnik, Alexey; Dudler, Robert (2014). Genome and Transcriptome Sequences of Pseudomonas syringae pv. syringae B301D-R. Genome Announcements, 2(2):e00306-e00314.
Akama, Satoru; Shimizu-Inatsugi, Rie; Shimizu, Kentaro K; Sese, Jun (2014). Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis. Nucleic Acids Research, 42(6):e46.
Stopnisek, Nejc; Bodenhausen, Natacha; Frey, Beat; Fierer, Noah; Eberl, Leo; Weisskopf, Laure (2014). Genus-wide acid tolerance accounts for the biogeographical distribution of soil Burkholderia populations. Environmental Microbiology, 16(6):1503-1512.
Shatalina, Margarita; Messmer, Monika; Feuillet, Catherine; Mascher, Fabio; Paux, Etienne; Choulet, Frédéric; Wicker, Thomas; Keller, Beat (2014). High-resolution analysis of a QTL for resistance to Stagonospora nodorum glume blotch in wheat reveals presence of two distinct resistance loci in the target interval. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 127(3):573-586.
Selter, L L; Shatalina, Margarita; Singla, Jyoti; Keller, B (2014). Identification and implementation of resistance: genomics-assisted use of genetic resources for breeding against powdery mildew and Stagonospora nodorum blotch in wheat. In: Tuberosa, Roberto; Graner, Andreas; Frison, Emile. Genomics of Plant Genetic Resources. Cham: Springer, 359-383.
Felekis, D; Vogler, H; Grossniklaus, U; Nelson, Bradley J (2014). In Emerging Tools for Micro and Nano Manipulation. In: Felekis, D; Vogler, H; Grossniklaus, Grossniklaus; Nelson, Bradley J. Microrobotic tools for plant biology. s.n.: Wiley-VCH, n/a.
Honegger, R. Kiwi und andere Strahlengriffelgewächse. In: Briefe aus dem Botanischen Garten Zürich, 48/1, 2014, 1-2.
Wuest, Samuel E; Grossniklaus, Ueli (2014). Laser-assisted microdissection applied to floral tissues. In: Riechmann, José Luis; Wellmer, Frank. Methods in Molecular Biology: Flower Development. New York, Heidelberg, Dordrecht, London: Springer, 329-344.
Christ, Bastien; Hörtensteiner, Stefan (2014). Mechanism and significance of chlorophyll breakdown. Journal of Plant Growth Regulation, 33(1):4-20.
Faltermann, Susanne; Zucchi, Sara; Kohler, Esther; Blom, Judith F; Pernthaler, Jakob; Fent, Karl (2014). Molecular effects of the cyanobacterial toxin cyanopeptolin (CP1020) occurring in algal blooms: Global transcriptome analysis in zebrafish embryos. Aquatic Toxicology, 149:33-39.
Bansal, Urmil; Bariana, Harbans; Wong, Debbie; Randhawa, Mandeep; Wicker, Thomas; Hayden, Matthew; Keller, Beat (2014). Molecular mapping of an adult plant stem rust resistance gene Sr56 in winter wheat cultivar Arina. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 127(6):1441-1448.
Zozomová-Lihova, Judita; Krak, Karol; Mandakova, Terezie; Shimizu, Kentaro K; Spaniel, Staniskav; Vit, Petr; Lysak, Martin A (2014). Multiple hybridization events in Cardamine (Brassicaceae) during the last 150 years: revisiting a textbook example of neoallopolyploidy. Annals of Botany, 113(5):817-830.
Dirren, Sebastian; Salcher, Michaela M; Blom, J F; Schweikert, M; Posch, T (2014). Ménage-à-trois: The amoeba Nuclearia sp. from Lake Zurich with its ecto- and endosymbiotic bacteria. Protist, 165(5):745-758.
Miyazaki, Yuko; Maruyama, Yosuke; Chiba, Yukako; Kobayashi, Masaki J; Joseph, Benesh; Shimizu, Kentaro K; Mochida, Keiichi; Hiura, Tsutom; Kon, Hirokazu; Satake, Akiko (2014). Nitrogen as a key regulator of flowering in Fagus crenata: understanding the physiological mechanism of masting by gene expression analysis. Ecology Letters, 17(10):1299-1309.
Wege, Stefanie; De Angeli, Alexis; Droillard, Marie-Jo; Kroniewicz, Laetitia; Merlot, Sylvain; Cornu, David; Gambale, Franco; Martinoia, Enrico; Barbier-Brygoo, Hélène; Thomine, Sébastien; Leonhardt, Nathalie; Filleur, Sophie (2014). Phosphorylation of the vacuolar anion exchanger AtCLCa is required for the stomatal response to abscisic acid. Science Signaling, 7(333):ra65.
Cachi, A M; Hedhly, A; Hormaza, J I; Wünsch, A (2014). Pollen tube growth in the self-compatible sweet cherry genotype, ‘Cristobalina’, is slowed down after self-pollination. Annals of Applied Biology, 164(1):73-84.
Lindner, Heike. Pollen tube reception in the synergid cells of Arabidopsis thaliana – Novel players and old acquaintances. 2014, University of Zurich, Faculty of Science.
Kropivšek, Klara; Pickford, Jasmine; Carter, David A (2014). Postnatal Dynamics of Zeb2 Expression in Rat Brain: Analysis of Novel 3' UTR Sequence Reveals a miR-9 Interacting Site. Journal of Molecular Neuroscience, 52(1):138-147.
Horigome, Chihiro; Oma, Yukako; Konishi, Tatsunori; Schmid, Roger; Marcomini, Isabella; Hauer, Michael H; Dion, Vincent; Harata, Masahiko; Gasser, Susan M (2014). SWR1 and INO80 chromatin remodelers contribute to DNA double-strand break perinuclear anchorage site choice. Molecular Cell, 55(4):626-639.
Salcher, Michaela M (2014). Same same but different: ecological niche partitioning of planktonic freshwater prokaryotes. Journal of Limnology, 73(1s):74-87.
Neuenschwander, Stefan M; Pernthaler, Jakob; Posch, Thomas; Salcher, Michaela M (2014). Seasonal growth potential of rare lake water bacteria suggest their disproportional contribution to carbon fluxes. Environmental Microbiology, 17(3):781-795.
Gossmann, Toni I; Schmid, Marc W; Grossniklaus, Ueli; Schmid, Karl J (2014). Selection-driven evolution of sex-biased genes is consistent with sexual selection in arabidopsis thaliana. Molecular Biology and Evolution, 31(3):574-583.
Middleton, Christopher P; Senerchia, Natacha; Stein, Nils; Akhunov, Eduard D; Keller, Beat; Wicker, Thomas; Kilian, Benjamin (2014). Sequencing of Chloroplast Genomes from Wheat, Barley, Rye and Their Relatives Provides a Detailed Insight into the Evolution of the Triticeae Tribe. PLoS ONE, 9(3):e85761.
Sailer, Christian; Schmid, Bernhard; Stöcklin, Jürg; Grossniklaus, Ueli (2014). Sexual Hieracium pilosella plants are better inter-specific, while apomictic plants are better intra-specific competitors. Perspectives in Plant Ecology, Evolution and Systematics, 16(2):43-51.
Stirnweis, Daniel; Milani, Samira Désiré; Jordan, Tina; Keller, Beat; Brunner, Susanne (2014). Substitutions of two amino acids in the nucleotide-binding site domain of a resistance protein enhance the hypersensitive response and enlarge the PM3F resistance spectrum in wheat. Molecular Plant-Microbe Interactions, 27(3):265-276.
Stirnweis, Daniel; Milani, Samira Désiré; Brunner, Susanne; Herren, Gerhard; Buchmann, Gabriele; Peditto, David; Jordan, Tina; Keller, Beat (2014). Suppression among alleles encoding NB-LRR resistance proteins interferes with resistance in F1 hybrid and allele-pyramided wheat plants. The Plant Journal, 79(6):893-903.
Aguilar, Claudio; Schmid, Nadine; Lardi, Martina; Pessi, Gabriella; Eberl, Leo (2014). The IclR-family regulator BapR controls biofilm formation in B. cenocepacia H111. PLoS ONE, 9(3):e92920.
Philipp, Matthias; John, Florian; Ringli, Christoph (2014). The cytosolic thiouridylase CTU2 of Arabidopsis thaliana is essential for posttranscriptional thiolation of tRNAs and influences root development. BMC Plant Biology, 14:109.
Wang, Muhua; Yu, Yeisoo; Haberer, Georg; Marri, Pradeep Reddy; Fan, Chuanzhu; Goicoechea, Jose Luis; Zuccolo, Andrea; Song, Xiang; Kudrna, Dave; Ammiraju, Jetty S S; Cossu, Rosa Maria; Maldonado, Carlos; Chen, Jinfeng; Lee, Seunghee; Sisneros, Nick; de Baynast, Kristi; Golser, Wolfgang; Wissotski, Marina; Kim, Woojin; Sanchez, Paul; Ndjiondjop, Marie-Noelle; Sanni, Kayode; Long, Manyuan; Carney, Judith; Panaud, Olivier; Wicker, Thomas; Machado, Carlos A; Chen, Mingsheng; Mayer, Klaus F X; Rounsley, Steve; Wing, Rod A (2014). The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication. Nature Genetics, 46(9):982-988.
Dudler, Robert (2014). The role of bacterial phytotoxins in inhibiting the eukaryotic proteasome. Trends in Microbiology, 22(1):28-35.
Miettinen, Karel; Dong, Lemeng; Navrot, Nicolas; Schneider, Thomas; Burlat, Vincent; Pollier, Jacob; Woittiez, Lotte; van der Krol, Sander; Lugan, Raphaël; Ilc, Tina; Verpoorte, Robert; Oksman-Caldentey, Kirsi-Marja; Martinoia, Enrico; Bouwmeester, Harro; Goossens, Alain; Memelink, Johan; Werck-Reichhart, Danièle (2014). The seco-iridoid pathway from Catharanthus roseus. Nature Communications, 5:3606.
Agnoli, K; Frauenknecht, C; Freitag, R; Schwager, S; Jenul, C; Vergunst, A; Carlier, A; Eberl, L (2014). The third replicon of members of the Burkholderia cepacia complex, plasmid pC3, plays a role in stress tolerance. Applied and Environmental Microbiology, 80(4):1340-1348.
Kohler, Esther; Grundler, Verena; Häussinger, Daniel; Kurmayer, Rainer; Gademann, Karl; Pernthaler, Jakob; Blom, Judith F (2014). The toxicity and enzyme activity of a chlorine and sulfate containing aeruginosin isolated from a non-microcystin-producing Planktothrix strain. Harmful Algae, 39:154-160.
Sela, Hanan; Spiridon, Laurentiu N; Ashkenazi, Haim; Bhullar, Navreet K; Brunner, Susanne; Petrescu, Andrei-Jose; Fahima, Tzion; Keller, Beat; Jordan, Tina (2014). Three-dimensional modeling and diversity analysis reveals distinct AVR recognition sites and evolutionary pathways in wild and domesticated wheat Pm3 R genes. Molecular Plant-Microbe Interactions, 27(8):835-845.
John, Florian; Philipp, Matthias; Leiber, Ruth-Maria; Errafi, Sanae; Ringli, Christoph (2014). Ubiquitin-related modifiers of arabidopsis thaliana influence root development. PLoS ONE, 9(1):e86862.
Alonso-Sáez, Laura; Zeder, Michael; Harding, Tommy; Pernthaler, Jakob; Lovejoy, Connie; Bertilsson, Stefan; Pedrós-Alió, Carlos (2014). Winter bloom of a rare betaproteobacterium in the Arctic Ocean. Frontiers in Microbiology:5:425.
Lozano-Durán, Rosa; Macho, Alberto P; Boutrot, Freddy; Segonzac, Cécile; Somssich, Imre E; Zipfel, Cyril (2013). The transcriptional regulator BZR1 mediates trade-off between plant innate immunity and growth. eLife, 2:e00983.
Galbiati, Francesca; Sinha Roy, Dola; Simonini, Sara; Cucinotta, Mara; Ceccato, Luca; Cuesta, Candela; Simaskova, Maria; Benkova, Eva; Kamiuchi, Yuri; Aida, Mitsuhiro; Weijers, Dolf; Simon, Rüdiger; Masiero, Simona; Colombo, Lucia (2013). An integrative model of the control of ovule primordia formation. The Plant Journal, 76(3):446-455.
Sun, Yadong; Li, Lei; Macho, Alberto P; Han, Zhifu; Hu, Zehan; Zipfel, Cyril; Zhou, Jian-Min; Chai, Jijie (2013). Structural Basis for flg22-Induced Activation of the Arabidopsis FLS2-BAK1 Immune Complex. Science, 342(6158):624-628.
Zhang, Weiguo; Fraiture, Malou; Kolb, Dagmar; Löffelhardt, Birgit; Desaki, Yoshitake; Boutrot, Freddy F G; Tör, Mahmut; Zipfel, Cyril; Gust, Andrea A; Brunner, Frédéric (2013). Arabidopsis receptor-like protein30 and receptor-like kinase suppressor of BIR1-1/EVERSHED mediate innate immunity to necrotrophic fungi. Plant Cell, 25(10):4227-4241.
Gregis, Veronica; Andrés, Fernando; Sessa, Alice; Guerra, Rosalinda F; Simonini, Sara; Mateos, Julieta L; Torti, Stefano; Zambelli, Federico; Prazzoli, Gian Marco; Bjerkan, Katrine N; Grini, Paul E; Pavesi, Giulio; Colombo, Lucia; Coupland, George; Kater, Martin M (2013). Identification of pathways directly regulated by SHORT VEGETATIVE PHASE during vegetative and reproductive development in Arabidopsis. Genome Biology, 14(6):R56.
Asai, Shuta; Ichikawa, Tatsushi; Nomura, Hironari; Kobayashi, Michie; Kamiyoshihara, Yusuke; Mori, Hitoshi; Kadota, Yasuhiro; Zipfel, Cyril; Jones, Jonathan D G; Yoshioka, Hirofumi (2013). The Variable Domain of a Plant Calcium-dependent Protein Kinase (CDPK) Confers Subcellular Localization and Substrate Recognition for NADPH Oxidase. Journal of Biological Chemistry, 288(20):14332-14340.
Farid, Akhlaq; Gro Malinovsky, Frederikke; Veit, Christiane; Schoberer, Jennifer; Zipfel, Cyril; Strasser, Richard (2013). Specialized Roles of the Conserved Subunit OST3/6 of the Oligosaccharyltransferase Complex in Innate Immunity and Tolerance to Abiotic Stresses. Plant Physiology, 162(1):24-38.
Zipfel, Cyril (2013). Combined roles of ethylene and endogenous peptides in regulating plant immunity and growth. Proceedings of the National Academy of Sciences of the United States of America, 110(15):5748-5749.
Jia, Jizeng; Zhao, Shancen; et al (2013). Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature, 496(7443):91-95.
Ogura, Atsushi; Yoshida, Masa-aki; Moritaki, Takeya; Sese, Jun; Shimizu, Kentaro K; Sousounis, Konstantinos; Tsonis, Panagiotis A (2013). Loss of the six3/6 controlling pathways might have resulted in pinhole-eye evolution in Nautilus. Scientific Reports, 3:1432.
Nicaise, Valerie; Joe, Anna; Jeong, Byeong-ryool; Korneli, Christin; Boutrot, Freddy; Westedt, Isa; Staiger, Dorothee; Alfano, James R; Zipfel, Cyril (2013). Pseudomonas HopU1 modulates plant immune receptor levels by blocking the interaction of their mRNAs with GRP7. The EMBO Journal, 32(5):701-712.
Khurana, Neetika; Chauhan, Harsh; Khurana, Paramjit (2013). Wheat chloroplast targeted shsp26 promoter confers heat and abiotic stress inducible expression in transgenic arabidopsis plants. PLoS ONE, 8(1):e54418.
Middleton, Christopher P; Stein, Nils; Keller, Beat; Kilian, Benjamin; Wicker, Thomas (2013). Comparative analysis of genome composition in Triticeae reveals strong variation in transposable element dynamics and nucleotide diversity. The Plant Journal, 73(2):347-356.
Sakuraba, Yasuhito; Kim, Ye-Sol; Yoo, Soo-Cheul; Hörtensteiner, Stefan; Paek, Nam-Chon (2013). 7-Hydroxymethyl chlorophyll a reductase functions in metabolic channeling of chlorophyll breakdown intermediates during leaf senescence. Biochemical and Biophysical Research Communications, 430(1):32-37.
Hayles, Jacqueline; Wood, Valerie; Jeffery, Linda; Hoe, Kwang-Lae; Kim, Dong-Uk; Park, Han-Oh; Salas-Pino, Silvia; Heichinger, Christian; Nurse, Paul (2013). A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biology, 3(5):130053.
Breen, James; Wicker, Thomas; Shatalina, Margarita; Frenkel, Zeev; Bertin, Isabelle; Philippe, Romain; Spielmeyer, Wolfgang; Šimková, Hana; Šafář, Jan; Cattonaro, Federica; Scalabrin, Simone; Magni, Federica; Vautrin, Sonia; Bergès, Hélène; Paux, Etienne; Fahima, Tzion; Doležel, Jaroslav; Korol, Abraham; Feuillet, Catherine; Keller, Beat (2013). A physical map of the short arm of wheat chromosome 1A. PLoS ONE, 8(11):e80272.
Oberhänsli, Simone. A reference sequence for Blumeria graminis f. sp. tritici (wheat powdery mildew) and its application for comparative and evolutionary genomics. 2013, University of Zurich, Faculty of Science.
Zürcher, Evelyne; Tavor-Deslex, Deborah; Lituiev, Dmytro; Enkerli, Katalin; Tarr, Paul T; Müller, Bruno (2013). A robust and sensitive synthetic sensor to monitor the transcriptional output of the cytokinin signaling network in planta. Plant Physiology, 161(3):1066-1075.
Sokoli, A. A study of mycoplasma suis pathomechanisms leading to immune modulation and hemorrhagic diathesis. 2013, University of Zurich, Faculty of Science.
Lituiev, D S. A theoretical and experimental study of cell specification in the female gametophyte. 2013, University of Zurich, Faculty of Science.
Francisco, Rita Maria; Regalado, Ana; Ageorges, Agnès; Burla, Bo J; Bassin, Barbara; Eisenach, Cornelia; Zarrouk, Olfa; Vialet, Sandrine; Marlin, Thérèse; Chaves, Maria Manuela; Martinoia, Enrico; Nagy, Réka (2013). ABCC1, an ATP binding cassette protein from grape berry, transports anthocyanidin 3-O-Glucosides. Plant Cell, 25(5):1840-1854.
Boisson-Dernier, Aurélien; Lituiev, Dmytro S; Nestorova, Anna; Franck, Christina Maria; Thirugnanarajah, Sharme; Grossniklaus, Ueli (2013). ANXUR receptor-like kinases coordinate cell wall integrity with growth at the pollen tube tip via NADPH oxidases. PLoS Biology, 11(11):e1001719.
Derlon, Nicolas; Koch, Nicolas; Eugster, Bettina; Posch, Thomas; Pernthaler, Jakob; Pronk, Wouter; Morgenroth, Eberhard (2013). Activity of metazoa governs biofilm structure formation and enhances permeate flux during Gravity-Driven Membrane (GDM) filtration. Water research, 47(6):2085-2095.
Ammann, T. Advancement and structural analysis of a subgingival biofilm model system. 2013, University of Zurich, Faculty of Science.
Refardt, D; Bergmiller, T; Kümmerli, Rolf (2013). Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection. Proceedings of the Royal Society of London, Series B: Biological Sciences, 280(1759):20123035.
Honegger, R. Ananas: Königin der Früchte. In: Gartenbriefe. Briefe aus dem Botanischen Garten Zürich, 47/1, 2013, 1-2.
Hofstetter, Silvia Schelbert; Dudnik, Alexey; Widmer, Heidi; Dudler, Robert (2013). Arabidopsis YELLOW STRIPE-LIKE7 (YSL7) and YSL8 transporters mediate uptake of pseudomonas virulence factor syringolin A into plant cells. Molecular Plant-Microbe Interactions, 26(11):1302-1311.
Seung, David; Thalmann, Matthias; Sparla, Francesca; Abou Hachem, Maher; Lee, Sang Kyu; Issakidis-Bourguet, Emmanuelle; Svensson, Birte; Zeeman, Samuel C; Santelia, Diana (2013). Arabidopsis thaliana AMY3 is a unique redox-regulated chloroplastic α-amylase. Journal of Biological Chemistry, 288(47):33620-33633.
Ranocha, Philippe; Dima, Oana; Nagy, Réka; Felten, Judith; Corratgé-Faillie, Claire; Novák, Ondřej; Morreel, Kris; Lacombe, Benoît; Martinez, Yves; Pfrunder, Stephanie; Jin, Xu; Renou, Jean-Pierre; Thibaud, Jean-Baptiste; Ljung, Karin; Fischer, Urs; Martinoia, Enrico; Boerjan, Wout; Goffner, Deborah (2013). Arabidopsis WAT1 is a vacuolar auxin transport facilitator required for auxin homoeostasis. Nature Communications, 4:2625.
Kim, Sangwoo; Yamaoka, Yasuyo; Ono, Hirofumi; Kim, Hanul; Shim, Donghwan; Maeshima, Masayoshi; Martinoia, Enrico; Cahoon, Edgar B; Nishida, Ikuo; Lee, Youngsook (2013). AtABCA9 transporter supplies fatty acids for lipid synthesis to the endoplasmic reticulum. Proceedings of the National Academy of Sciences of the United States of America, 110(2):773-778.
De Angeli, Alexis; Zhang, Jingbo; Meyer, Stefan; Martinoia, Enrico (2013). AtALMT9 is a malate-activated vacuolar chloride channel required for stomatal opening in Arabidopsis. Nature Communications, 4:1804.
Honegger, Rosmarie; Axe, Lindsey; Edwards, Dianne (2013). Bacterial epibionts and endolichenic actinobacteria and fungi in the Lower Devonian lichen Chlorolichenomycites salopensis. Fungal Biology, 117(7-8):512-518.
Ocampo, Paolo Santiago S. Bacterial responses during antibiotic treatment. 2013, University of Zurich, Faculty of Science.
Gomes, José; Grunau, Alexander; Lawrence, Adrien K; Eberl, Leo; Gademann, Karl (2013). Bioinspired Surfaces Against Bacterial Infections. CHIMIA International Journal for Chemistry, 67(4):275-278.
Gomes, José; Grunau, Alexander; Lawrence, Adrien K; Eberl, Leo; Gademann, Karl (2013). Bioinspired, releasable quorum sensing modulators. Chemical Communications, 49(2):155-157.
Mumm, Patrick; Imes, Dennis; Martinoia, Enrico; Al-Rasheid, Khaled A S; Geiger, Dietmar; Marten, Irene; Hedrich, Rainer (2013). C-terminus-mediated voltage gating of arabidopsis guard cell anion channel QUAC1. Molecular Plant, 6(5):1550-1563.
Wuest, Samuel E; Schmid, Marc W; Grossniklaus, Ueli (2013). Cell-specific expression profiling of rare cell types as exemplified by its impact on our understanding of female gametophyte development. Current Opinion in Plant Biology, 16(1):41-49.
Kobayashi, Masaki J; Shimizu, Kentaro K (2013). Challenges in studies on flowering time: interfaces between phenological research and the molecular network of flowering genes. Ecological Research, 28(2):161-172.
Kamber, Tim. Characterization of Erwinia amylovora - host plant and - biocontrol agent interactions. 2013, University of Zurich, Faculty of Science.
Grob, Stefan; Schmid, Marc W; Luedtke, Nathan W; Wicker, Thomas; Grossniklaus, Ueli (2013). Characterization of chromosomal architecture in Arabidopsis by chromosome conformation capture. Genome Biology, 14:R129.
Kräutler, Bernhard; Hörtensteiner, Stefan (2013). Chlorophyll breakdown: Chemistry, biochemistry, and biology. In: Ferreira, G C; Kadish, K M; Smith, K M; Guilard, R. Handbook of Porphyrin Science (Volume 28). New Jersey, Kalifornien: World Scientific Publishing Co. Pte. Ltd., 117-185.
Christ, Bastien. Chlorophyll breakdown: modifications of colorless chlorophyll catabolites. 2013, University of Zurich, Faculty of Science.
She, Wenjing; Grimanelli, Daniel; Rutowicz, Kinga; Whitehead, Marek W J; Puzio, Marcin; Kotlinski, Maciej; Jerzmanowski, Andrzej; Baroux, Célia (2013). Chromatin reprogramming during the somatic-to-reproductive cell fate transition in plants. Development, 140(19):4008-4019.
Corno, Gianluca; Villiger, Jörg; Pernthaler, Jakob (2013). Coaggregation in a microbial predator–prey system affects competition and trophic transfer efficiency. Ecology, 94(4):870-881.
Edwards, Dianne; Axe, Lindsey; Honegger, Rosmarie (2013). Contributions to the diversity in cryptogamic covers in the mid-Palaeozoic: Nematothallus revisited. Botanical Journal of the Linnean Society, 173(4):505-534.
O'Maoileidigh, D S; Wuest, S E; Rae, L; Raganelli, A; Ryan, P T; Kwasniewska, K; Das, P; Lohan, A J; Loftus, B; Graciet, E; Wellmer, F (2013). Control of reproductive floral organ identity specification in Arabidopsis by the C function regulator AGAMOUS. Plant Cell, 25(7):2482-2503.
Christ, Bastien; Süssenbacher, Iris; Moser, Simone; Bichsel, Nicole; Egert, Aurelie; Müller, Thomas; Kräutler, Bernhard; Hörtensteiner, Stefan (2013). Cytochrome P450 CYP89A9 is involved in the formation of major chlorophyll catabolites during leaf senescence in Arabidopsis. Plant Cell, 25(5):1868-1880.
Refardt, Dominik; Kümmerli, Rolf (2013). Defying bacteriophages: Contrasting altruistic with individual-based resistance mechanisms in Escherichia coli. Communicative & Integrative Biology, 6(5):e25159.
Karger, Dirk Nikolaus. Determinants of species diversity across spatial scales. 2013, University of Zurich, Faculty of Science.
Tsuchimatsu, Takashi; Shimizu, Kentaro K (2013). Effects of pollen availability and the mutation bias on the fixation of mutations disabling the male specificity of self-incompatibility. Journal of Evolutionary Biology, 26(10):2221-2232.
Raissig, Michael T; Gagliardini, Valeria; Jaenisch, Johan; Grossniklaus, Ueli; Baroux, Célia (2013). Efficient and rapid isolation of early-stage embryos from Arabidopsis thaliana seeds. Journal of Visualized Experiments, (76):e50371.
Honegger, R. Elias Landolt (24. Juli 1926 - 1. April 2013) Prof. Dr. sc. nat. ETH. In: Vierteljahresschrift der Naturforschenden Gesellschaft in Zürich, 158, 2013, 105-106.
Alonso, Cecilia; Piccini, Claudia; Unrein, Fernando; Bertoglio, Florencia; Conde, Daniel; Pernthaler, Jakob (2013). Environmental dynamics as a structuring factor for microbial carbon utilization in a subtropical coastal lagoon. Frontiers in Microbiology:4:14.
Hirsch, S; Baumberger, R; Grossniklaus, U (2013). Epigenetic variation, inheritance, and selection in plant populations. Cold Spring Harbor Symposia on Quantitative Biology, 77:97-104.
Barrell, Philippa; Grossniklaus, Ueli (2013). Examining female meiocytes of maize by confocal microscopy. In: Pawlowski, Wojciech; Grelon, Mathilde; Armstrong, Susan. Plant Meiosis : Methods and Protocols. Totowa: Springer (Bücher), 45-52.
Mayank, Pururawa. Exploring the role of phosphorylation in Arabidopsis thaliana pollination-specific tissue by applying phosphoproteomics. 2013, University of Zurich, Faculty of Science.
Dengler, Vanina. Factors affecting antibiotic resistance of staphylococcus aureus. 2013, University of Zurich, Faculty of Science.
Gomes, José; Huber, Natalie; Grunau, Alexander; Eberl, Leo; Gademann, Karl (2013). Fluorescent labeling agents for quorum-sensing receptors (FLAQS) in live cells. Chemistry - A European Journal, 19(30):9766-9770.
Pernthaler, Jakob (2013). Freshwater microbial communities. In: Rosenberg, Eugene; DeLong, Edward; Lory, Stefan. The Prokaryotes. Berlin Heidelberg: Springer, 97-112.
Selter, Liselotte Laurence. Functional validation of the durable disease resistance gene Lr34 in wheat and heterologous grass species. 2013, University of Zurich, Faculty of Science.
Nyati, Shyam; Werth, Silke; Honegger, Rosmarie (2013). Genetic diversity of sterile cultured Trebouxia photobionts associated with the lichen-forming fungus Xanthoria parietina visualized with RAPD-PCR fingerprinting techniques. The Lichenologist, 45(06):825-840.
Middleton, Christopher. Genome composition and transposable element dynamics in triticeae, the use of chloroplast sequences to data divergence times and transcriptome analysis of transposable element expression. 2013, University of Zurich, Faculty of Science.
Raissig, Michael T. Genomic imprinting in Arabidopsis thaliana – how is it regulated and where does it occur? 2013, University of Zurich, Faculty of Science.
Raissig, Michael T; Bemer, Marian; Baroux, Célia; Grossniklaus, Ueli (2013). Genomic imprinting in the Arabidopsis embryo is partly regulated by PRC2. PLoS Genetics, 9(12):e1003862.
Shatalina, Margarita; Wicker, Thomas; Buchmann, Jan P; Oberhaensli, Simone; Simková, Hana; Doležel, Jaroslav; Keller, Beat (2013). Genotype-specific SNP map based on whole chromosome 3B sequence information from wheat cultivars Arina and Forno. Plant biotechnology journal, 11(1):23-32.
Braun, R; Grossniklaus, U; Gygax, D; Kohler, S; Matthias, P; Romeis, J; Sanvido, O; Stieger, P (2013). Gentechnisch veränderte Nutzpflanzen und ihre Bedeutung für eine nachhaltige Landwirtschaft in der Schweiz. Bern: Akademien der Wissenschaften Schweiz.
Eckert, Ester M; Baumgartner, Michael; Huber, Iris M; Pernthaler, Jakob (2013). Grazing resistant freshwater bacteria profit from chitin and cell-wall-derived organic carbon. Environmental Microbiology, 15(7):2019-2030.
Dudnik, Alexey; Bigler, Laurent; Dudler, Robert (2013). Heterologous expression of a Photorhabdus luminescens syrbactin-like gene cluster results in production of the potent proteasome inhibitor glidobactin A. Microbiological Research, 168(2):73-76.
Dudnik, A; Dudler, R (2013). High-quality draft genome sequence of pseudomonas syringae pv. Syringae Strain SM, isolated from wheat. Genome Announcements, 1(4):e00610-e00613.
Shatalina, Margarita. Highresolution analysis of a QTL for resistance to Stagonospora nodorum glume blotch on chromosome 3B of Bread Wheat (Triticum aestivum L). 2013, University of Zurich, Faculty of Science.
Lynch, Karlene H; Liang, Yongjie; Eberl, Leo; Wishart, David S; Dennis, Jonathan J (2013). Identification and characterization of ϕH111-1: A novel myovirus with broad activity against clinical isolates of Burkholderia cenocepacia. Bacteriophage, 3(4):e26649.
Schwager, S; Agnoli, K; Kothe, M; Feldmann, F; Givskov, M; Carlier, A; Eberl, L (2013). Identification of Burkholderia cenocepacia Strain H111 virulence factors using nonmammalian infection hosts. Infection and Immunity, 81(1):143-153.
Zhang, Jingbo; Baetz, Ulrike; Krügel, Undine; Martinoia, Enrico; De Angeli, Alexis (2013). Identification of a probable pore-forming domain in the multimeric vacuolar anion channel AtALMT9. Plant Physiology, 163(2):830-843.
Honegger, R. In Memoriam Elias Landolt (Beiblatt zu den Briefen aus dem Botanischen Garten). In: Gartenbriefe. Briefe aus dem Botanischen Garten Zürich, 47/3, 2013, S1-S2.
Salcher, Michaela M; Posch, Thomas; Pernthaler, Jakob (2013). In situ substrate preferences of abundant bacterioplankton populations in a prealpine freshwater lake. The ISME journal, 7(5):896-907.
Pomati, Francesco; Kraft, Nathan J B; Posch, Thomas; Eugster, Bettina; Jokela, Jukka; Ibelings, Bas W (2013). Individual cell based traits obtained by scanning flow-cytometry show selection by biotic and abiotic environmental factors during a phytoplankton spring bloom. PLoS ONE, 8(8):e71677.
Shabarova, Tatiana. Life in subsurface pools: Insight into microbial diversity and dynamics in the endokarst environment. 2013, University of Zurich, Faculty of Science.
Dudler, Robert (2013). Manipulation of host proteasomes as a virulence mechanism of plant pathogens. Annual Review of Phytopathology, 51(1):521-542.
Shabarova, Tanja; Widmer, Franco; Pernthaler, Jakob (2013). Mass effects meet species sorting: transformations of microbial assemblages in epiphreatic subsurface karst water pools. Environmental Microbiology, 15(9):2476-2488.
Kobayashi, Masaki J; Takeuchi, Yayoi; Kenta, Tanaka; Kume, Tomonori; Diway, Bibian; Shimizu, Kentaro K (2013). Mass flowering of the tropical tree Shorea beccariana was preceded by expression changes in flowering and drought-responsive genes. Molecular Ecology, 22(18):4767-4782.
Dudnik, Alexey; Dudler, Robert (2013). Non contiguous-finished genome sequence of Pseudomonas syringae pathovar syringae strain B64 isolated from wheat. Standards in Genomic Sciences, 8(3):420-429.
Eckert, Ester. Organic carbon uptake by bacteria with different live strategies – Successions and unexplored food web interactions. 2013, University of Zurich, Faculty of Science.
Baroux, Célia; Autran, Daphné; Raissig, Michael T; Grimanelli, Daniel; Grossniklaus, Ueli (2013). Parental contributions to the transcriptome of early plant embryos. Current Opinion in Genetics & Development, 23(1):72-74.
Piccini, Claudia; Conde, Daniel; Pernthaler, Jakob; Sommaruga, Ruben (2013). Photoalteration of macrophyte-derived chromophoric dissolved organic matter induces growth of single bacterial populations in a coastal lagoon. Journal of Limnology, 72(3):582-591.
Nyati, Shyam; Bhattacharya, Debashish; Werth, Silke; Honegger, Rosmarie (2013). Phylogenetic analysis of LSU and SSU rDNA group I introns of lichen photobionts associated with the genera Xanthoria and Xanthomendoza (Teloschistaceae, lichenized Ascomycetes). Journal of Phycology, 49(6):1154-1166.
Breitkopf, H; Schlüter, P M; Xu, S; Schiestl, F P; Cozzolino, S; Scopece, G (2013). Pollinator shifts between Ophrys sphegodes populations: might adaptation to different pollinators drive population divergence? Journal of Evolutionary Biology, 26(10):2197-2208.
Fischer, Martin C; Rellstab, Christian; Tedder, Andrew; Zoller, Stefan; Gugerli, Felix; Shimizu, Kentaro K; Holderegger, Rolf; Widmer, Alex (2013). Population genomic footprints of selection and associations with climate in natural populations of Arabidopsis halleri from the Alps. Molecular Ecology, 22(22):5594-5607.
Groenhagen, Ulrike; Baumgartner, Rita; Bailly, Aurélien; Gardiner, Amber; Eberl, Leo; Schulz, Stefan; Weisskopf, Laure (2013). Production of bioactive volatiles by different Burkholderia ambifaria strains. Journal of Chemical Ecology, 39(7):892-906.
Carlier, Aurelien L; Omasits, Ulrich; Ahrens, Christian H; Eberl, Leo (2013). Proteomics analysis of Psychotria leaf nodule symbiosis: Improved genome annotation and metabolic predictions. Molecular Plant-Microbe Interactions, 26(11):1325-1333.
Spaniol, Violeta; Wyder, Stefan; Aebi, Christoph (2013). RNA-Seq-based analysis of the physiologic cold shock-induced changes in Moraxella catarrhalis gene expression. PLoS ONE, 8(7):e68298.
Quiblier, Chantal Irene. RND proteins in Staphylococcus aureus: their function and impact on fitness, resistance and virulence. 2013, University of Zurich, Faculty of Science.
Krattinger, Simon G; Jordan, David R; Mace, Emma S; Raghavan, Chitra; Luo, Ming-Cheng; Keller, Beat; Lagudah, Evans S (2013). Recent emergence of the wheat Lr34 multi-pathogen resistance: insights from haplotype analysis in wheat, rice, sorghum and Aegilops tauschii. Theoretical and Applied Genetics, 126(3):663-672.
Pires, Nuno D; Yi, Keke; Breuninger, Holger; Catarino, Bruno; Menand, Benoît; Dolan, Liam (2013). Recruitment and remodeling of an ancient gene regulatory network during land plant evolution. Proceedings of the National Academy of Sciences of the United States of America, 110(23):9571-9576.
Nodzynski, Tomasz; Feraru, Mugurel I; Hirsch, Sibylle; De Rycke, Riet; Niculaes, Claudiu; Boerjan, Wout; Van Leene, Jelle; De Jaeger, Geert; Vanneste, Steffen; Friml, Jirí (2013). Retromer subunits VPS35A and VPS29 mediate prevacuolar compartment (PVC) function in Arabidopsis. Molecular Plant, 6(6):1849-1862.
Subramoni, S; Agnoli, K; Eberl, L; Lewenza, S; Sokol, P A (2013). Role of Burkholderia cenocepacia afcE and afcF genes in determining lipid-metabolism-associated phenotypes. Microbiology, 159(Pt_3):603-614.
Hurni, Severine; Brunner, Susanne; Buchmann, Gabriele; Herren, Gerhard; Jordan, Tina; Krukowski, Patricia; Wicker, Thomas; Yahiaoui, Nabila; Mago, Rohit; Keller, Beat (2013). RyePm8and wheatPm3are orthologous genes and show evolutionary conservation of resistance function against powdery mildew. The Plant Journal, 76(6):957-969.
Piwosz, K; Salcher, M M; Zeder, M; Ameryk, A; Pernthaler, J (2013). Seasonal dynamics and activity of typical freshwater bacteria in brackish waters of the Gulf of Gdańsk. Limnology and Oceanography, 58(3):817-826.
Szovenyi, Peter; Ricca, Mariana; Hock, Zsofia; Shaw, Jonathan A; Shimizu, Kentaro K; Wagner, Andreas (2013). Selection is no more efficient in haploid than in diploid life stages of an angiosperm and a moss. Molecular Biology and Evolution, 30(8):1929-1939.
Garneau, Marie-Ève; Posch, Thomas; Hitz, Gregory; Pomerleau, François; Pradalier, Cédric; Siegwart, Roland; Pernthaler, Jakob (2013). Short-term displacement of Planktothrix rubescens (cyanobacteria) in a pre-alpine lake observed using an autonomous sampling platform. Limnology and Oceanography, 58(5):1892-1906.
Meekins, David A; Guo, Hou-Fu; Husodo, Satrio; Paasch, Bradley C; Bridges, Travis M; Santelia, Diana; Kötting, Oliver; Vander Kooi, Craig W; Gentry, Matthew S (2013). Structure of the Arabidopsis glucan phosphatase like sex four2 reveals a unique mechanism for starch dephosphorylation. Plant Cell, 25(6):2302-2314.
Dumas, Z; Ross-Gillespie, A; Kümmerli, Rolf (2013). Switching between apparently redundant iron-uptake mechanisms benefits bacteria in changeable environments. Proceedings of the Royal Society of London, Series B: Biological Sciences, 280(1764):20131055.
Lindner, Matias; Simonini, Sara; Kooiker, Maarten; Gagliardini, Valeria; Somssich, Marc; Hohenstatt, Mareike; Simon, Rüdiger; Grossniklaus, Ueli; Kater, Martin M (2013). TAF13 interacts with PRC2 members and is essential for Arabidopsis seed development. Developmental Biology, 379(1):28-37.
Schmidt, Anja; Wöhrmann, Heike J P; Raissig, Michael T; Arand, Julia; Gheyselinck, Jacqueline; Gagliardini, Valeria; Heichinger, Christian; Walter, Joern; Grossniklaus, Ueli (2013). The Polycomb group protein MEDEA and the DNA methyltransferase MET1 interact in Arabidopsis to repress autonomous endosperm development. The Plant Journal, 73(5):776-787.
Sailer, Christian. The Relationship Between the Success of Invasive Plants and their Mode of Reproduction. 2013, University of Zurich, Faculty of Science.
Ngo, Quy A; Albrecht, Huguette; Tsuchimatsu, Takashi; Grossniklaus, Ueli (2013). The differentially regulated genes TvQR1 and TvPirin of the parasitic plant Triphysaria exhibit distinctive natural allelic diversity. BMC Plant Biology, 13:28.
Honegger, Rosmarie; Edwards, Dianne; Axe, Lindsey (2013). The earliest records of internally stratified cyanobacterial and algal lichens from the Lower Devonian of the Welsh Borderland. New Phytologist, 197(1):264-275.
Hörtensteiner, Stefan (2013). The pathway of chlorophyll degradation: Catabolites, enzymes and pathway regulation. In: Biswal, B; Krupinska, K. Plastid Development in Leaves during Growth and Senescence. Dordrecht, The Netherlands: Springer Netherlands, 363-392.
Raats, Dina; Frenkel, Zeev; Krugman, Tamar; Dodek, Itay; Sela, Hanan; Šimková, Hana; Magni, Federica; Cattonaro, Federica; Vautrin, Sonia; Bergès, Hélène; Wicker, Thomas; Keller, Beat; Leroy, Philippe; Philippe, Romain; Paux, Etienne; Doležel, Jaroslav; Feuillet, Catherine; Korol, Abraham; Fahima, Tzion (2013). The physical map of wheat chromosome 1BS provides insights into its gene space organization and evolution. Genome Biology, 14(12):R138.
Vogler, Hannes; Draeger, Christian; Weber, Alain; Felekis, Dimitris; Eichenberger, Christof; Routier-Kierzkowska, Anne-Lise; Boisson-Dernier, Aurélien; Ringli, Christoph; Nelson, Bradley J; Smith, Richard S; Grossniklaus, Ueli (2013). The pollen tube: a soft shell with a hard core. The Plant Journal, 73(4):617-627.
Sass, Andrea M; Schmerk, Crystal; Agnoli, Kirsty; Norville, Phillip J; Eberl, Leo; Valvano, Miguel A; Mahenthiralingam, Eshwar (2013). The unexpected discovery of a novel low-oxygen-activated locus for the anoxic persistence of Burkholderia cenocepacia. The ISME journal, 7(8):1568-1581.
De Angeli, Alexis; Baetz, Ulrike; Francisco, Rita; Zhang, Jingbo; Chaves, Maria Manuela; Regalado, Ana (2013). The vacuolar channel VvALMT9 mediates malate and tartrate accumulation in berries of Vitis vinifera. Planta, 238(2):283-291.
Wicker, Thomas; Oberhaensli, Simone; Parlange, Francis; Buchmann, Jan P; Shatalina, Margarita; Roffler, Stefan; Ben-David, Roi; Doležel, Jaroslav; Šimkova, Hana; Schulze-Lefert, Paul; Spanu, Pietro D; Bruggmann, Rémy; Amselem, Joelle; Quesneville, Hadi; van Themaat, Emiel Ver Loren; Paape, Timothy; Shimizu, Kentaro K; Keller, Beat (2013). The wheat powdery mildew genome shows the unique evolution of an obligate biotroph. Nature Genetics, 45(9):1092-1096.
Risk, Joanna M; Selter, Liselotte L; Chauhan, Harsh; Krattinger, Simon G; Kumlehn, Jochen; Hensel, Goetz; Viccars, Libby A; Richardson, Terese M; Buesing, Gabriele; Troller, Anna; Lagudah, Evans S; Keller, Beat (2013). The wheatLr34gene provides resistance against multiple fungal pathogens in barley. Plant Biotechnology Journal, 11(7):847-854.
Lituiev, Dmytro S; Krohn, Nádia G; Müller, Bruno; Jackson, David; Hellriegel, Barbara; Dresselhaus, Thomas; Grossniklaus, Ueli (2013). Theoretical and experimental evidence indicates that there is no detectable auxin gradient in the angiosperm female gametophyte. Development, 140(22):4544-4553.
Kong, Yingying; Zhu, Yubin; Gao, Chen; She, Wenjing; Lin, Weiqiang; Chen, Yong; Han, Ning; Bian, Hongwu; Zhu, Muyuan; Wang, Junhui (2013). Tissue-specific expression of SMALL AUXIN UP RNA41 differentially regulates cell expansion and root meristem patterning in Arabidopsis. Plant & Cell Physiology, 54(4):609-621.
Sedeek, Khalid E M; Qi, Weihong; Schauer, Monica A; Gupta, Alok K; Poveda, Lucy; Xu, Shuqing; Liu, Zhong-Jian; Grossniklaus, Ueli; Schiestl, Florian P; Schlüter, Philipp M (2013). Transcriptome and proteome data reveal candidate genes for pollinator attraction in sexually deceptive Orchids. PLoS ONE, 8(5):e64621.
Grossniklaus, Ueli; Kelly, William G; Kelly, Bill; Ferguson-Smith, Anne C; Pembrey, Marcus; Lindquist, Susan (2013). Transgenerational epigenetic inheritance: how important is it? Nature Reviews. Genetics, 14(3):228-235.
Shim, Donghwan; Kim, Sangwoo; Choi, Young-Im; Song, Won-Yong; Park, Jiyoung; Youk, Eun Soo; Jeong, Soon-Chun; Martinoia, Enrico; Noh, Eun-Woon; Lee, Youngsook (2013). Transgenic poplar trees expressing yeast cadmium factor 1 exhibit the characteristics necessary for the phytoremediation of mine tailing soil. Chemosphere, 90(4):1478-1486.
Buchmann, J P; Wicker, T; Keller, B (2013). Transposons in cereals: shaping genomes and driving their evolution. In: Gupta, P K; Varshney, P K. Cereal Genomics II. Dordrecht: Springer Science+Business Media Dordrecht, 127-154.
Suppiger, Angela; Schmid, Nadine; Aguilar, Claudio; Pessi, Gabriella; Eberl, Leo (2013). Two quorum sensing systems control biofilm formation and virulence in members of the Burkholderia cepacia complex. Virulence, 4(5):400-409.
Eiler, Alexander; Drakare, Stina; Bertilsson, Stefan; Pernthaler, Jakob; Peura, Sari; Rofner, Carina; Simek, Karel; Yang, Yang; Znachor, Petr; Lindström, Eva S (2013). Unveiling distribution patterns of freshwater phytoplankton by a next generation sequencing based approach. PLoS ONE, 8(1):e53516.
Hörtensteiner, Stefan (2013). Update on the biochemistry of chlorophyll breakdown. Plant molecular biology, 82(6):505-517.
Burla, Bo; Pfrunder, Stefanie; Nagy, Réka; Francisco, Rita Maria; Lee, Youngsook; Martinoia, Enrico (2013). Vacuolar transport of abscisic acid glucosyl ester is mediated by ATP-binding cassette and proton-antiport mechanisms in Arabidopsis. Plant Physiology, 163(3):1446-1458.
Li, Shaohui; Ji, Rui; Dudler, Robert; Yong, Mingli; Deng, Qide; Wang, Zhengyi; Hu, Dongwei (2013). Wheat gene TaS3 contributes to powdery mildew susceptibility. Plant Cell Reports, 32(12):1891-1901.
Pont, Caroline; Murat, Florent; Guizard, Sébastien; Flores, Raphael; Foucrier, Séverine; Bidet, Yannick; Quraishi, Umar Masood; Alaux, Michael; Doležel, Jaroslav; Fahima, Tzion; Budak, Hikmet; Keller, Beat; Salvi, Silvio; Maccaferri, Marco; Steinbach, Delphine; Feuillet, Catherine; Quesneville, Hadi; Salse, Jérôme (2013). Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes. The Plant Journal, 76(6):1030-1044.
Blom, J F. Chemical interactions between aquatic microorganisms. 2012, University of Zurich, Faculty of Science.
Win, J; Chaparro-Garcia, A; Belhaj, K; Saunders, D G O; Yoshida, K; Dong, S; Schornack, S; Zipfel, Cyril; Robatzek, S; Hogenhout, S A; Kamoun, Sophien (2012). Effector Biology of Plant-Associated Organisms: Concepts and Perspectives. Cold Spring Harbor Symposia on Quantitative Biology, 77:235-247.
Simonini, Sara; Roig-Villanova, Irma; Gregis, Veronica; Colombo, Bilitis; Colombo, Lucia; Kater, Martin M (2012). Basic pentacysteine proteins mediate MADS domain complex binding to the DNA for tissue-specific expression of target genes in Arabidopsis. Plant Cell, 24(10):4163-4172.
Storari, Michelangelo; Bigler, Laurent; Gessler, Cesare; Broggini, Giovanni A L (2012). Assessment of the ochratoxin A production ability of Aspergillus tubingensis. Food Additives & Contaminants. Part A, Chemistry, Analysis, Control, Exposure & Risk Assessment, 29(9):1450-1454.
Wöhrmann, Heike J P; Gagliardini, Valeria; Raissig, Michael T; Wehrle, Wendelin; Arand, Julia; Schmidt, Anja; Tierling, Sascha; Page, Damian R; Schöb, Hanspeter; Walter, Jörn; Grossniklaus, Ueli (2012). Identification of a DNA methylation-independent imprinting control region at the Arabidopsis MEDEA locus. Genes and Development, 26(16):1837-1850.
D'Hont, Angélique; Denoeud, France; Aury, Jean-Marc; Baurens, Franc-Christophe; Carreel, Françoise; Garsmeur, Olivier; Noel, Benjamin; Bocs, Stéphanie; Droc, Gaëtan; Rouard, Mathieu; Da Silva, Corinne; Jabbari, Kamel; Cardi, Céline; Poulain, Julie; Souquet, Marlène; Labadie, Karine; Jourda, Cyril; Lengellé, Juliette; Rodier-Goud, Marguerite; Alberti, Adriana; Bernard, Maria; Correa, Margot; Ayyampalayam, Saravanaraj; Mckain, Michael R; Leebens-Mack, Jim; Burgess, Diane; Freeling, Mike; Mbéguié-A-Mbéguié, Didier; Chabannes, Matthieu; Wicker, Thomas; Panaud, Olivier; Barbosa, Jose; Hribova, Eva; Heslop-Harrison, Pat; Habas, Rémy; Rivallan, Ronan; Francois, Philippe; Poiron, Claire; Kilian, Andrzej; Burthia, Dheema; Jenny, Christophe; Bakry, Frédéric; Brown, Spencer; Guignon, Valentin; Kema, Gert; Dita, Miguel; Waalwijk, Cees; Joseph, Steeve; Dievart, Anne; Jaillon, Olivier; Leclercq, Julie; Argout, Xavier; Lyons, Eric; Almeida, Ana; Jeridi, Mouna; Dolezel, Jaroslav; Roux, Nicolas; Risterucci, Ange-Marie; Weissenbach, Jean; Ruiz, Manuel; Glaszmann, Jean-Christophe; Quétier, Francis; Yahiaoui, Nabila; Wincker, Patrick (2012). The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature, 488(7410):213-217.
Bourras, S; Meyer, M; Grandaubert, J; Lapalu, N; Fudal, I; Linglin, J; Ollivier, B; Blaise, F; Balesdent, M-H; Rouxel, T (2012). Incidence of Genome Structure, DNA Asymmetry, and Cell Physiology on T-DNA Integration in Chromosomes of the Phytopathogenic Fungus Leptosphaeria maculans. G3 : Genes, Genomes, Genetics, 2(8):891-904.
Macho, Alberto P; Boutrot, Freddy; Rathjen, John P; Zipfel, Cyril (2012). Aspartate Oxidase Plays an Important Role in Arabidopsis Stomatal Immunity. Plant Physiology, 159(4):1845-1856.
Monaghan, Jacqueline; Zipfel, Cyril (2012). Plant pattern recognition receptor complexes at the plasma membrane. Current Opinion in Plant Biology, 15(4):349-357.
Ramel, Christina; Baechler, Nando; Hildbrand, Michel; Meyer, Martin; Schädeli, David; Dudler, Robert (2012). Regulation of biosynthesis of syringolin a, a pseudomonas syringae virulence factor targeting the host proteasome. Molecular Plant-Microbe Interactions, 25(9):1198-1208.
Segonzac, Cécile; Nimchuk, Zachary L; Beck, Martina; Tarr, Paul T; Robatzek, Silke; Meyerowitz, Elliot M; Zipfel, Cyril (2012). The Shoot Apical Meristem Regulatory Peptide CLV3 Does Not Activate Innate Immunity. Plant Cell, 24(8):3186-3192.
Bencivenga, Stefano; Simonini, Sara; Benková, Eva; Colombo, Lucia (2012). The transcription factors BEL1 and SPL are required for cytokinin and auxin signaling during ovule development in Arabidopsis. Plant Cell, 24(7):2886-2897.
Dumas, Zoe; Kümmerli, Rolf (2012). Cost of cooperation rules selection for cheats in bacterial metapopulations. Journal of Evolutionary Biology, 25(3):473-484.
Jakobsen, Tim Holm; van Gennip, Maria; Phipps, Richard Kerry; Shanmugham, Meenakshi Sundaram; Christensen, Louise Dahl; Alhede, Morten; Skindersoe, Mette Eline; Rasmussen, Thomas Bovbjerg; Friedrich, Karlheinz; Uthe, Friedrich; Jensen, Peter Østrup; Moser, Claus; Nielsen, Kristian Fog; Eberl, Leo; Larsen, Thomas Ostenfeld; Tanner, David; Høiby, Niels; Bjarnsholt, Thomas; Givskov, Michael (2012). Ajoene, a sulfur rich molecule from garlic, inhibits genes controlled by quorum sensing. Antimicrobial Agents and Chemotherapy, 56(5):2314-2325.
Draeger, Christian. A genetic, biochemical, and biomechanical study of plant cell wall dynamics in pollen tubes. 2012, University of Zurich, Faculty of Science.
Kretzschmar, Tobias; Kohlen, Wouter; Sasse, Joelle; Borghi, Lorenzo; Schlegel, Markus; Bachelier, Julien B; Reinhardt, Didier; Bours, Ralph; Bouwmeester, Harro J; Martinoia, Enrico (2012). A petunia ABC protein controls strigolactone-dependent symbiotic signalling and branching. Nature, 483(7389):341-344.
Schmid, Marc W; Schmidt, Anja; Klostermeier, Ulrich C; Barann, Matthias; Rosenstiel, Philip; Grossniklaus, Ueli (2012). A powerful method for transcriptional profiling of specific cell types in eukaryotes: laser-assisted microdissection and RNA sequencing. PLoS ONE, 7(1):e29685.
Pattanayak, Gopal K; Venkataramani, Sujatha; Hortensteiner, Stefan; Kunz, Lukas; Christ, Bastien; Moulin, Michael; Smith, Alison G; Okamoto, Yukihiro; Tamiaki, Hitoshi; Sugishima, Masakazu; Greenberg, Jean T (2012). Accelerated cell death 2 suppresses mitochondrial oxidative bursts and modulates cell death in Arabidopsis. The Plant Journal, 69(4):589-600.
Ibarra, Christian A; Feng, Xiaoqi; Schoft, Vera K; Hsieh, Tzung-Fu; Uzawa, Rie; Rodrigues, Jessica A; Zemach, Assaf; Chumak, Nina; Machlicova, Adriana; Nishimura, Toshiro; Rojas, Denisse; Fischer, Robert L; Tamaru, Hisashi; Zilberman, Daniel (2012). Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes. Science, 337(6100):1360-1364.
Archer, Crystal R; Groll, Michael; Stein, Martin L; Schellenberg, Barbara; Clerc, Jérôme; Kaiser, Markus; Kondratyuk, Tamara P; Pezzuto, John M; Dudler, Robert; Bachmann, André S (2012). Activity enhancement of the synthetic syrbactin proteasome inhibitor hybrid and biological evaluation in tumor cells. Biochemistry, 51(34):6880-6888.
Honegger, R (2012). Aino Marjatta Henssen (1925–2011). Bryologist, 115(2):350-353.
Buchmann, J P. Analysis of DNA-transposons in the genome of Brachypodium distachyon reveals mechanisms for intergenic sequence turnover. 2012, University of Zurich, Faculty of Science.
Dieckmann, Sarah Maria. Analysis of novel haemotrophic mycoplasma isolates with main focus on significance of haemotrophic mycoplasma infections in horses. 2012, University of Zurich, Faculty of Science.
Schmidt, Anja; Schmid, Marc W; Grossniklaus, Ueli (2012). Analysis of plant germline development by high-throughput RNA profiling: technical advances and new insights. The Plant Journal, 70(1):18-29.
Sela, H; Spiridon, L N; Petrescu, A J; Akerman, M; Mandel-Gutfreund, Y; Nevo, E; Loutre, C; Keller, B; Schulman, A H; Fahima, T (2012). Ancient diversity of splicing motifs and protein surfaces in the wild emmer wheat (Triticum dicoccoides) LR10 coiled coil (CC) and leucine-rich repeat (LRR) domains. Molecular Plant Pathology, 13(3):276-287.
Jacquat, C (2012). Andermatt / Golf (canton d’Uri, Suisse). Analyses carpologiques. Aarau, Switzerland: Prospect GmbH.
Alejandro, Santiago; Lee, Yuree; Tohge, Takayuki; Sudre, Damien; Osorio, Sonia; Park, Jiyoung; Bovet, Lucien; Lee, Youngsook; Geldner, Niko; Fernie, Alisdair R; Martinoia, Enrico (2012). AtABCG29 is a monolignol transporter involved in lignin biosynthesis. Current Biology, 22(13):1207-1212.
Jaciubek, M. Attempts to engineer parthenogenesis in Arabidopsis thaliana. 2012, University of Zurich, Faculty of Science.
You, Wanhui; Tyczewska, Agata; Spencer, Matthew; Daxinger, Lucia; Schmid, Marc W; Grossniklaus, Ueli; Simon, Stacey A; Meyers, Blake C; Matzke, Antonius J M; Matzke, Marjori (2012). Atypical DNA methylation of genes encoding cysteine-rich peptides in Arabidopsis thaliana. BMC Plant Biology, 12:51.
Miedaner, T; Risser, P; Paillard, S; Schnurbusch, T; Keller, B; Hartl, L; Holzapfel, J; Korzun, V; Ebmeyer, E; Utz, H F (2012). Broad-spectrum resistance loci for three quantitatively inherited diseases in two winter wheat populations. Molecular Breeding, 29(3):731-742.
Ringli, Christoph; Kuhn, Benjamin M; Bigler, Laurent (2012). Cell Growth Processes in Arabidopsis thaliana are Modified by Flavonols. CHIMIA International Journal for Chemistry, 66(9):714.
Mayank, Pururawa; Grossman, Jonas; Wuest, Samuel; Boisson-Dernier, Aurélien; Roschitzki, Bernd; Nanni, Paolo; Nühse, Thomas; Grossniklaus, Ueli (2012). Characterization of the phosphoproteome of mature Arabidopsis pollen. The Plant Journal, 72(1):89-101.
Deng, Y; Schmid, N; Wang, C; Wang, J; Pessi, G; Wu, D; Lee, J; Aguilar, C; Ahrens, C H; Chang, C; Song, H; Eberl, L; Zhang, L H (2012). Cis-2-dodecenoic acid receptor RpfR links quorum-sensing signal perception with regulation of virulence through cyclic dimeric guanosine monophosphate turnover. Proceedings of the National Academy of Sciences of the United States of America, 109(38):15479-15484.
Schulze, Waltraud X; Schneider, Thomas; Starck, Sabrina; Martinoia, Enrico; Trentmann, Oliver (2012). Cold acclimation induces changes in Arabidopsis tonoplast protein abundance and activity and alters phosphorylation of tonoplast monosaccharide transporters. The Plant Journal, 69(3):529-541.
Gerber, Simon D; Amann, Ruth; Wyder, Stefan; Trueb, Beat (2012). Comparison of the gene expression profiles from normal and Fgfrl1 deficient mouse kidneys reveals downstream targets of Fgfrl1 signaling. PLoS ONE, 7(3):e33457.
Manickavelu, A; Kawaura, K; Oishi, K; Shin-I, T; Kohara, Y; Yahiaoui, N; Keller, B; Abe, R; Suzuki, A; Nagayama, T; Yano, K; Ogihara, Y (2012). Comprehensive functional analyses of expressed sequence tags in common wheat (triticum aestivum). DNA Research, 19(2):165-177.
Kritsas, Konstantinos; Wuest, Samuel E; Hupalo, Daniel; Kern, Andrew D; Wicker, Thomas; Grossniklaus, Ueli (2012). Computational analysis and characterization of UCE-like elements (ULEs) in plant genomes. Genome Research, 22(12):2455-2466.
Lindner, Heike; Müller, Lena Maria; Boisson-Dernier, Aurélien; Grossniklaus, Ueli (2012). CrRLK1L receptor-like kinases: not just another brick in the wall. Current Opinion in Plant Biology, 15(6):659-669.
Lorè, Nicola Ivan; Cigana, Cristina; De Fino, Ida; Riva, Camilla; Juhas, Mario; Schwager, Stephan; Eberl, Leo; Bragonzi, Alessandra (2012). Cystic fibrosis-niche adaptation of Pseudomonas aeruginosa reduces virulence in multiple infection hosts. PLoS ONE, 7(4):e35648.
Hwang, Ildoo; Sheen, Jen; Müller, Bruno (2012). Cytokinin signaling networks. Annual Review of Plant Biology, 63:353-380.
Iwano, Megumi; Ngo, Quy A; Entani, Tetsuyuki; Shiba, Hiroshi; Nagai, Takeharu; Miyawaki, Atsushi; Isogai, Akira; Grossniklaus, Ueli; Takayama, Seiji (2012). Cytoplasmic Ca2+ changes dynamically during the interaction of the pollen tube with synergid cells. Development, 139(22):4202-4209.
Mascher, F; Matasci, C; Kneubuehler, Y; Kellenberger, S; Diaz Quijano, C; Keller, B; Sautter, C; Schori, A (2012). Die Resistenz transgener Weizenlinien gegen Pilzkrankheiten im Feldversuch. Agrarforschung Schweiz, 3(6):298-305.
Pessione, Alessandro; Lamberti, Cristina; Cocolin, Luca; Campolongo, Simona; Grunau, Alexander; Giubergia, Sonia; Eberl, Leo; Riedel, Kathrin; Pessione, Enrica (2012). Different protein expression profiles in cheese and clinical isolates of Enterococcus faecalis revealed by proteomic analysis. Proteomics, 12(3):431-447.
Honegger, Rosmarie (2012). Differential gene expression within the cyanobacterial cell population of a lichen thallus. New Phytologist, 196(3):657-660.
Bemer, Marian; Grossniklaus, Ueli (2012). Dynamic regulation of Polycomb group activity during plant development. Current Opinion in Plant Biology, 15(5):523-529.
Meyer, Andrea; Megerle, Judith A; Kuttler, Christina; Müller, Johannes; Aguilar, Claudio; Eberl, Leo; Hense, Burkhard A; Rädler, Joachim O (2012). Dynamics of AHL mediated quorum sensing under flow and non-flow conditions. Physical Biology, 9(2):026007.
Grassl, Julia; Pružinská, Adriana; Hörtensteiner, Stefan; Taylor, Nicolas L; Millar, A Harvey (2012). Early events in plastid protein degradation in stay-green Arabidopsis reveal differential regulation beyond the retention of LHCII and chlorophyll. Journal of Proteome Research, 11(11):5443-5452.
Keiblinger, K M; Schneider, T; Roschitzki, B; Schmid, E; Eberl, L; Hämmerle, I; Leitner, S; Richter, A; Wanek, W; Riedel, K; Zechmeister-Boltenstern, S (2012). Effects of stoichiometry and temperature perturbations on beech leaf litter decomposition, enzyme activities and protein expression. Biogeosciences, 9(11):4537-4551.
Sprunck, Stefanie; Rademacher, Svenja; Vogler, Frank; Gheyselinck, Jacqueline; Grossniklaus, Ueli; Dresselhaus, Thomas (2012). Egg cell-secreted EC1 triggers sperm cell activation during double fertilization. Science, 338(6110):1093-1097.
Keller, B (2012). Erfahrungen mit den Feldversuchen im Rahmen des NFP59. In: Nutzen und Risiken der Freisetzung gentechnisch veränderter Pflanzen. In: NFP. Nutzen und Risiken der Freisetzung gentechnisch veränderter Pflanzen. Zürich, CH: Vdf Hochschulverlag AG, ETH Zürich, 226-237.
Juhas, Mario; Eberl, Leo; Church, George M (2012). Essential genes as antimicrobial targets and cornerstones of synthetic biology. Trends in Biotechnology, 30(11):601-607.
Horňák, Karel; Corno, Gianluca (2012). Every coin has a back side: invasion by limnohabitans planktonicus promotes the maintenance of species diversity in bacterial communities. PLoS ONE, 7(12):e51576.
Burla, Bo Johannes. Evolutionary analysis of abcc transporters and characterization of vacuolar transport mechanisms of the glucosylated phytohormone absicisic acid. 2012, University of Zurich, Faculty of Science.
Agnoli, Kirsty; Schwager, Stephan; Uehlinger, Susanne; Vergunst, Annette; Viteri, Duber F; Nguyen, David T; Sokol, Pamela A; Carlier, Aurélien; Eberl, Leo (2012). Exposing the third chromosome of Burkholderia cepacia complex strains as a virulence plasmid. Molecular Microbiology, 83(2):362-378.
Khurana, Neetika; Chauhan, Harsh; Khurana, Paramjit (2012). Expression analysis of a heat-inducible, Myo-inositol-1-phosphate synthase (MIPS) gene from wheat and the alternatively spliced variants of rice and Arabidopsis. Plant Cell Reports, 31(1):237-251.
Honegger, R (2012). Faszinierendes Reich der Pilze. Weder Tier noch Pflanze. 4 bis 8: Fachzeitschrift für Kindergarten und Unterstufe, (6):16-19.
Lenton, Timothy M; Crouch, Michael; Johnson, Martin; Pires, Nuno; Dolan, Liam (2012). First plants cooled the Ordovician. Nature Geoscience, 5(2):86-89.
Risk, Joanna M; Selter, Liselotte L; Krattinger, Simon G; Viccars, Libby A; Richardson, Terese M; Buesing, Gabriele; Herren, Gerhard; Lagudah, Evans S; Keller, Beat (2012). Functional variability of the Lr34 durable resistance gene in transgenic wheat. Plant Biotechnology Journal, 10(4):477-487.
Xu, Meimei; Galhano, Rita; Wiemann, Philipp; Bueno, Emilio; Tiernan, Mollie; Wu, William; Chung, Ill-Min; Gershenzon, Jonathan; Tudzynski, Bettina; Sesma, Ane; Peters, Reuben J (2012). Genetic evidence for natural product-mediated plant-plant allelopathy in rice (Oryza sativa). New Phytologist, 193(3):570-575.
Posch, Thomas; Köster, Oliver; Salcher, Michaela M; Pernthaler, Jakob (2012). Harmful filamentous cyanobacteria favoured by reduced water turnover with lake warming. Nature Climate Change, 2(11):809-813.
Juhas, Mario; Stark, Manuel; von Mering, Christian; Lumjiaktase, Puthapoom; Crook, Derrick W; Valvano, Miguel A; Eberl, Leo (2012). High confidence prediction of essential genes in burkholderia cenocepacia. PLoS ONE, 7(6):e40064.
Pires, Nuno D; Grossniklaus, Ueli (2012). How to fine-tune an epigenetic switch. Developmental Cell, 23(3):453-454.
Chhuneja, P; Kumar, K; Stirnweis, D; Hurni, S; Keller, B; Dhaliwal, H S; Singh, K (2012). Identification and mapping of two powdery mildew resistance genes in Triticum boeoticum L. Theoretical and Applied Genetics, 124(6):1051-1058.
Njau, P N; Bhavani, S; Huerta-Espino, J; Keller, B; Singh, R P (2012). Identification of QTL associated with durable adult plant resistance to stem rust Ug99 in wheat cultivar 'Pavon 76'. Euphytica:online.
Inhülsen, Silja; Aguilar, Claudio; Schmid, Nadine; Suppiger, Angela; Riedel, Kathrin; Eberl, Leo (2012). Identification of functions linking quorum sensing with biofilm formation inBurkholderia cenocepaciaH111. MicrobiologyOpen, 1(2):225-242.
Toyofuku, Masanori; Roschitzki, Bernd; Riedel, Katharina; Eberl, Leo (2012). Identification of proteins associated with the Pseudomonas aeruginosa biofilm extracellular matrix. Journal of Proteome Research, 11(10):4906-4915.
Honegger, R (2012). In Memoriam. Nicolaas Christianus Johannes (Nico) Duijvestijn (1941-2012). Briefe aus dem Botanischen Garten Zürich:1.
Badri, Dayakar V; Chaparro, Jacqueline M; Manter, Daniel K; Martinoia, Enrico; Vivanco, Jorge M (2012). Influence of ATP-binding cassette transporters in root exudation of phytoalexins, signals, and in disease resistance. Frontiers in Plant Science:3:149.
Buchmann, Jan P; Matsumoto, Takashi; Stein, Nils; Keller, Beat; Wicker, Thomas (2012). Inter-species sequence comparison of Brachypodium reveals how transposon activity corrodes genome colinearity. The Plant Journal, 71(4):550-563.
Klockgether, Jens; Miethke, Norbert; Kubesch, Peter; Bohn, Yu-Sing; Brockhausen, Inka; Cramer, Nina; Eberl, Leo; Greipel, Joachim; Herrmann, Christian; Herrmann, Susanne; Horatzek, Sonja; Lingner, Meike; Luciano, Liliana; Salunkhe, Prabhakar; Schomburg, Dietmar; Wehsling, Maria; Wiehlmann, Lutz; Davenport, Colin F; Tümmler, Burkhard (2012). Intraclonal diversity of the Pseudomonas aeruginosa cystic fibrosis airway isolates TBCF10839 and TBCF121838: distinct signatures of transcriptome, proteome, metabolome, adherence and pathogenicity despite an almost identical genome sequence. Environmental Microbiology, 15(1):191-210.
Hassler, Sebastian; Lemke, Lilia; Jung, Benjamin; Möhlmann, Torsten; Krüger, Falco; Schumacher, Karin; Espen, Luca; Martinoia, Enrico; Neuhaus, H Ekkehard (2012). Lack of the Golgi phosphate transporter PHT4;6 causes strong developmental defects, constitutively activated disease resistance mechanisms and altered intracellular phosphate compartmentation in Arabidopsis. The Plant Journal, 72(5):732-744.
Rienmüller, Florian; Dreyer, Ingo; Schönknecht, Gerald; Schulz, Alexander; Schumacher, Karin; Nagy, Réka; Martinoia, Enrico; Marten, Irene; Hedrich, Rainer (2012). Luminal and cytosolic pH feedback on proton pump activity and ATP affinity of V-type ATPase from Arabidopsis. Journal of Biological Chemistry, 287(12):8986-8993.
Castella, Daniel; Buard, Jean-Francois; David-Elbiali, Mireille; Jacquat, Christiane; Northover, Peter J; Olive, Claude (2012). L’habitat de l’âge du Bronze moyen de Payerne «En Planeise» (canton de Vaud, Suisse). Lausanne: Cahiers d'archéologie romande.
Christ, Bastien; Schelbert, Silvia; Aubry, Sylvain; Süssenbacher, Iris; Müller, Thomas; Kräutler, Bernhard; Hörtensteiner, Stefan (2012). MES16, a member of the methylesterase protein family, specifically demethylates fluorescent chlorophyll catabolites during chlorophyll breakdown in Arabidopsis. Plant physiology, 158(2):628-641.
Distefano, Gaetano; Hedhly, Afif; Las Casas, Giuseppina; La Malfa, Stefano; Herrero, Maria; Gentile, Alessandra (2012). Male–female interaction and temperature variation affect pollen performance in Citrus. Scientia Horticulturae, 140(1):1-7.
Saharan, M S; Tiwari, R; Krattinger, S G; Keller, B; Priyamvada, A (2012). Mapping of Indian bread wheat population, HS 2189 x Agra Local for adult plant leaf rust resistance, Lr34. Indian Phytopathology, 65:128-132.
Leshem, Yehoram; Johnson, Cameron; Wuest, Samuel E; Song, Xiaoya; Ngo, Quy A; Grossniklaus, Ueli; Sundaresan, Venkatesan (2012). Molecular characterization of the glauce mutant: a central cell-specific function is required for double fertilization in Arabidopsis. Plant Cell, 24(8):3264-3277.
Pires, Nuno D; Dolan, Liam (2012). Morphological evolution in land plants: new designs with old genes. Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences, 367(1588):508-518.
Züst, Tobias; Heichinger, Christian; Grossniklaus, Ueli; Harrington, Richard; Kliebenstein, Daniel J; Turnbull, Lindsay A (2012). Natural enemies drive geographic variation in plant defenses. Science, 338(6103):116-119.
Stein, M L; Beck, P; Kaiser, M; Dudler, R; Becker, C F W; Groll, M (2012). One-shot NMR analysis of microbial secretions identifies highly potent proteasome inhibitor. Proceedings of the National Academy of Sciences, 109(45):18367-18371.
Simanski, Maren; Babucke, Sarah; Eberl, Leo; Harder, Jürgen (2012). Paraoxonase 2 acts as a quorum sensing-quenching factor in human keratinocytes. Journal of Investigative Dermatology, 132(9):2296-2299.
Xu, Shuqing; Schlüter, Philipp M; Schiestl, Florian P (2012). Pollinator-driven speciation in sexually deceptive Orchids. International Journal of Ecology, 2012:285081.
Tsuchimatsu, Takashi; Kaiser, Pascal; Yew, Chow-Lih; Bachelier, Julien B; Shimizu, Kentaro K (2012). Recent loss of self-incompatibility by degradation of the male component in allotetraploid Arabidopsis kamchatica. PLoS Genetics, 8(7):e1002838.
Roux, Milena; Zipfel, Cyril (2012). Receptor Kinase Interactions: Complexity of Signalling. In: Tax, Frans; Kemmerling, Birgit. Receptor-like kinases in plants : from development to defense. Berlin: Springer, 145-172.
Lindner, Heike; Raissig, Michael T; Sailer, Christian; Shimosato-Asano, Hiroko; Bruggmann, Rémy; Grossniklaus, Ueli (2012). SNP-Ratio Mapping (SRM): identifying lethal alleles and mutations in complex genetic backgrounds by next-generation sequencing. Genetics, 191(4):1381-1386.
Sakuraba, Yasuhito; Schelbert, Silvia; Park, So-Yon; Han, Su-Hyun; Lee, Byoung-Doo; Andrès, Céline Besagni; Kessler, Felix; Hörtensteiner, Stefan; Paek, Nam-Chon (2012). STAY-GREEN and chlorophyll catabolic enzymes interact at light-harvesting complex II for chlorophyll detoxification during leaf senescence in Arabidopsis. Plant Cell, 24(2):507-518.
Martis, M M; Klemme, S; Banaei-Moghaddam, A M; Blattner, F R; Macas, J; Schmutzer, T; Scholz, Uwe; Gundlach, H; Wicker, T; Simkova, H; Novak, P; Neumann, P; Kubalakova, M; Bauer, E; Haseneyer, G; Fuchs, J; Dolezel, J; Stein, N; Mayer, K F X; Houben, A (2012). Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences. Proceedings of the National Academy of Sciences of the United States of America, 109(33):13343-13346.
Keiblinger, Katharina M; Wilhartitz, Inés C; Schneider, Thomas; Roschitzki, Bernd; Schmid, Emanuel; Eberl, Leo; Riedel, Kathrin; Zechmeister-Boltenstern, Sophie (2012). Soil metaproteomics – Comparative evaluation of protein extraction protocols. Soil Biology and Biochemistry, 54(15-10):14-24.
Ramel, C F. Syringolin A: Biosynthesis, Regulation and Effects in Plants. 2012, University of Zurich, Faculty of Science.
Marshall, Alex; Aalen, Reidunn B; Audenaert, Dominique; Beeckman, Tom; Broadley, Martin R; Butenko, Melinka A; Caño-Delgado, Ana I; de Vries, Sacco; Dresselhaus, Thomas; Felix, Georg; Graham, Neil S; Foulkes, John; Granier, Christine; Greb, Thomas; Grossniklaus, Ueli; Hammond, John P; Heidstra, Renze; Hodgman, Charlie; Hothorn, Michael; Inzé, Dirk; Ostergaard, Lars; Russinova, Eugenia; Simon, Rüdiger; Skirycz, Aleksandra; Stahl, Yvonne; Zipfel, Cyril; De Smet, Ive (2012). Tackling drought stress: receptor-like kinases present new approaches. Plant Cell, 24(6):2262-2278.
Neumann, Frank R; Dion, Vincent; Gehlen, Lutz R; Tsai-Pflugfelder, Monika; Schmid, Roger; Taddei, Angela; Gasser, Susan M (2012). Targeted INO80 enhances subnuclear chromatin movement and ectopic homologous recombination. Genes and Development, 26(4):369-383.
Schmid, Nadine; Pessi, Gabriella; Deng, Yinyue; Aguilar, Claudio; Carlier, Aurelien L; Grunau, Alexander; Omasits, Ulrich; Zhang, Lian-Hui; Ahrens, Christian H; Eberl, Leo (2012). The AHL- and BDSF-dependent quorum sensing systems control specific and overlapping sets of genes in Burkholderia cenocepacia H111. PLoS ONE, 7(11):e49966.
Ngo, Quy A; Baroux, Celia; Guthörl, Daniela; Mozerov, Peter; Collinge, Margaret A; Sundaresan, Venkatesan; Grossniklaus, Ueli (2012). The Armadillo repeat gene ZAK IXIK promotes Arabidopsis early embryo and endosperm development through a distinctive gametophytic maternal effect. Plant Cell, 24(10):4026-4043.
John, F. The TOR pathway, a central relay linking cell growth and cell wall dynamics in Arabidopsis thaliana. 2012, University of Zurich, Faculty of Science.
Carlier, Aurelien L; Eberl, Leo (2012). The eroded genome of a Psychotria leaf symbiont: hypotheses about lifestyle and interactions with its plant host. Environmental Microbiology, 14(10):2757-2769.
Schwager, Stephan; Lumjiaktase, Putthapoom; Stöckli, Martina; Weisskopf, Laure; Eberl, Leo (2012). The genetic basis of cadmium resistance of Burkholderia cenocepacia. Environmental Microbiology Reports, 4(5):562-568.
Xu, Shuqing; Schlüter, Philipp M; Grossniklaus, Ueli; Schiestl, Florian P (2012). The genetic basis of pollinator adaptation in a sexually deceptive orchid. PLoS Genetics, 8(8):e1002889.
Park, Jiyoung; Song, Won-Yong; Ko, Donghwi; Eom, Yujin; Hansen, Thomas H; Schiller, Michaela; Lee, Tai Gyu; Martinoia, Enrico; Lee, Youngsook (2012). The phytochelatin transporters AtABCC1 and AtABCC2 mediate tolerance to cadmium and mercury. The Plant Journal, 69(2):278-288.
Petricka, Jalean J; Schauer, Monica A; Megraw, Molly; Breakfield, Natalie W; Thompson, J Will; Georgiev, Stoyan; Soderblom, Erik J; Ohler, Uwe; Moseley, Martin Arthur; Grossniklaus, Ueli; Benfey, Philip N (2012). The protein expression landscape of the Arabidopsis root. Proceedings of the National Academy of Sciences of the United States of America, 109(18):6811-6818.
Honegger, R (2012). The symbiotic phenotype of lichen-forming ascomycetes and their endo- and epibionts. In: Hock, Bertold. Fungal Associations. Berlin, Heidelberg: Springer, 287-339.
Bemer, Marian; Karlova, Rumyana; Ballester, Ana Rosa; Tikunov, Yury M; et al (2012). The tomato FRUITFULL homologs TDR4/FUL1 and MBP7/FUL2 regulate ethylene-independent aspects of fruit ripening. Plant Cell, 24(11):4437-4451.
Schwager, S. The use of non-mammalian infection models to study the pathogenicity of Pseudomonas aeruginosa and members of the genus Burkholderia. 2012, University of Zurich, Faculty of Science.
Chauhan, Harsh; Khurana, Neetika; Nijhavan, Aashima; Khurana, Jitendra p; Khurana, Paramjit (2012). The wheat chloroplastic small heat shock protein (sHSP26) is involved in seed maturation and germination and imparts tolerance to heat stress. Plant, cell & environment, 35(11):1912-1931.
Brunner, S; Stirnweis, D; Diaz Quijano, C; Buesing, G; Herren, G; Parlange, F; Barret, P; Tassy, C; Sautter, C; Winzeler, M; Keller, B (2012). Transgenic Pm3 multilines of wheat show increased powdery mildew resistance in the field. Plant Biotechnology Journal, 10(4):398-409.
Martinoia, Enrico; Meyer, Stefan; De Angeli, Alexis; Nagy, Réka (2012). Vacuolar transporters in their physiological context. Annual Review of Plant Biology, 63:183-213.
Schneider, Thomas; Keiblinger, Katharina M; Schmid, Emanuel; Sterflinger-Gleixner, Katja; Ellersdorfer, Günther; Roschitzki, Bernd; Richter, Andreas; Eberl, Leo; Zechmeister-Boltenstern, Sophie; Riedel, Kathrin (2012). Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions. The ISME journal, 6(9):1749-1762.
Honegger, R (2012). Zauberhafte Zitrusfrüchte (Citrus-Arten). Briefe aus dem Botanischen Garten Zürich, 46(1):1-2.
Rossetti, V; Filippini, M; Svercel, M; Barbour, A D; Bagheri, Homayoun C (2011). Emergent multicellular life cycles in filamentous bacteria owing to density-dependent population dynamics. Journal of the Royal Society Interface, 8(65):1772-1784.
Ntoukakis, Vardis; Schwessinger, Benjamin; Segonzac, Cécile; Zipfel, Cyril (2011). Cautionary Notes on the Use of C-Terminal BAK1 Fusion Proteins for Functional Studies. Plant Cell, 23(11):3871-3878.
John, F; Roffler, S; Wicker, T; Ringli, C (2011). Plant TOR signaling components. Plant Signaling & Behavior, 6(11):1700-1705.
Albrecht, Catherine; Boutrot, Freddy; Segonzac, Cécile; Schwessinger, Benjamin; Gimenez-Ibanez, Selena; Chinchilla, Delphine; Rathjen, John P; de Vries, Sacco C; Zipfel, Cyril (2011). Brassinosteroids inhibit pathogen-associated molecular pattern–triggered immune signaling independent of the receptor kinase BAK1. Proceedings of the National Academy of Sciences of the United States of America, 109(1):303-308.
Zeder, M; Kohler, E; Zeder, L; Pernthaler, J (2011). A novel algorithm for the determination of bacterial cell volumes that is unbiased by cell morphology. Microscopy and Microanalysis, 17(5):799-809.
Yoshida, Masa-aki; Ishikura, Yukiko; Moritaki, Takeya; Shoguchi, Eiichi; Shimizu, Kentaro K; Sese, Jun; Ogura, Atsushi (2011). Genome structure analysis of molluscs revealed whole genome duplication and lineage specific repeat variation. Gene, 483(1-2):63-71.
Piwosz, K; Pernthaler, J (2011). Enrichment of omnivorous cercozoan nanoflagellates from coastal Baltic Sea waters. PLoS ONE, 6(9):e24415.
Shimizu, Kentaro K; Kudoh, Hiroshi; Kobayashi, Masaki J (2011). Plant sexual reproduction during climate change: gene function in natura studied by ecological and evolutionary systems biology. Annals of Botany, 108(4):777-787.
Salcher, M M; Pernthaler, J; Posch, T (2011). Seasonal bloom dynamics and ecophysiology of the freshwater sister clade of SAR11 bacteria 'that rule the waves' (LD12). ISME Journal, 5(8):1242-1252.
Mago, R; Tabe, L; McIntosh, R A; Pretorius, Z; Kota, R; Paux, E; Wicker, T; Breen, J; Lagudah, E S; Ellis, J G; Spielmeyer, W (2011). A multiple resistance locus on chromosome arm 3BS in wheat confers resistance to stem rust (Sr2), leaf rust (Lr27) and powdery mildew. Theoretical and Applied Genetics, 123(4):615-623.
Kawagoe, Tetsuhiro; Shimizu, Kentaro K; Kakutani, Tetsuji; Kudoh, Hiroshi (2011). Coexistence of trichome variation in a natural plant population: A combined study using ecological and candidate gene approaches. PLoS ONE, 6(7):e22184.
Denness, Lucinda; McKenna, Joseph Francis; Segonzac, Cécile; Wormit, Alexandra; Madhou, Priya; Bennett, Mark; Mansfield, John; Zipfel, Cyril; Hamann, Thorsten (2011). Cell Wall Damage-Induced Lignin Biosynthesis Is Regulated by a Reactive Oxygen Species- and Jasmonic Acid-Dependent Process in Arabidopsis. Plant Physiology, 156(3):1364-1374.
Schirrmeister, B; Anisimova, M; Antonelli, A; Bagheri, Homayoun C (2011). Evolution of cyanobacterial morphotypes. Communicative & Integrative Biology, 4(4):424-427.
Kuhn, B M; Geisler, M; Bigler, L; Ringli, C (2011). Flavonols accumulate asymmetrically and affect auxin transport in Arabidopsis. Plant Physiology, 156(2):585-595.
Segonzac, Cécile; Feike, Doreen; Gimenez-Ibanez, Selena; Hann, Dagmar R; Zipfel, Cyril; Rathjen, John P (2011). Hierarchy and Roles of Pathogen-Associated Molecular Pattern-Induced Responses in Nicotiana benthamiana. Plant Physiology, 156(2):687-699.
Roux, Milena; Schwessinger, Benjamin; Albrecht, Catherine; Chinchilla, Delphine; Jones, Alexandra; Holton, Nick; Malinovsky, Frederikke Gro; Tör, Mahmut; de Vries, Sacco; Zipfel, Cyril (2011). The Arabidopsis Leucine-Rich Repeat Receptor–Like Kinases BAK1/SERK3 and BKK1/SERK4 Are Required for Innate Immunity to Hemibiotrophic and Biotrophic Pathogens. Plant Cell, 23(6):2440-2455.
Schwessinger, Benjamin; Roux, Milena; Kadota, Yasuhiro; Ntoukakis, Vardis; Sklenar, Jan; Jones, Alexandra; Zipfel, Cyril (2011). Phosphorylation-Dependent Differential Regulation of Plant Growth, Cell Death, and Innate Immunity by the Regulatory Receptor-Like Kinase BAK1. PLoS Genetics, 7(4):e1002046.
Chauhan, Harsh; Khurana, Paramjit (2011). Use of doubled haploid technology for development of stable drought tolerant bread wheat (Triticum aestivum L.) transgenics. Plant Biotechnology Journal, 9(3):408-417.
Liebminger, Eva; Veit, Christiane; Pabst, Martin; Batoux, Martine; Zipfel, Cyril; Altmann, Friedrich; Mach, Lukas; Strasser, Richard (2011). β-N-Acetylhexosaminidases HEXO1 and HEXO3 Are Responsible for the Formation of Paucimannosidic N-Glycans in Arabidopsis thaliana. Journal of Biological Chemistry, 286(12):10793-10802.
Segonzac, Cécile; Zipfel, Cyril (2011). Activation of plant pattern-recognition receptors by bacteria. Current Opinion in Microbiology, 14(1):54-61.
Krattinger, S G; Lagudah, E S; Wicker, T; Risk, J M; Ashton, A R; Selter, L L; Matsumoto, T; Keller, B (2011). Lr34 multi-pathogen resistance ABC transporter: molecular analysis of homoeologous and orthologous genes in hexaploid wheat and other grass species. The Plant Journal, 65(3):392-403.
Chaparro-Garcia, Angela; Wilkinson, Rachael C; Gimenez-Ibanez, Selena; Findlay, Kim; Coffey, Michael D; Zipfel, Cyril; Rathjen, John P; Kamoun, Sophien; Schornack, Sebastian (2011). The Receptor-Like Kinase SERK3/BAK1 Is Required for Basal Resistance against the Late Blight Pathogen Phytophthora infestans in Nicotiana benthamiana. PLoS ONE, 6(1):e16608.
Van den Wyngaert, S; Salcher, M M; Pernthaler, J; Posch, T (2011). Quantitative dominance of seasonally persistent filamentous cyanobacteria (Planktothrix rubescens) in the microbial assemblages of a temperate lake. Limnology and Oceanography, 56(1):97-109.
Sela, H; Loutre, C; Keller, B; Nevo, E; Korol, A; Fahima, T (2011). Rapid linkage disequilibrium decay in the Lr10 gene in wild emmer wheat (Triticum dicoccoides) populations. Theoretical and Applied Genetics, 122(1):175-187.
Kuhn, B. A genetic study identifying the physiological effects and cellular target processes of Flavonols in the roll-2 mutant of Arabidopsis thaliana. 2011, University of Zurich, Faculty of Science.
Parlange, F; Oberhaensli, S; Breen, J; Platzer, M; Taudien, S; Šimková, H; Wicker, T; Doležel, J; Keller, B (2011). A major invasion of transposable elements accounts for the large size of the Blumeria graminis f.sp. tritici genome. Functional & Integrative Genomics, 11(4):671-677.
Jacquat, Christiane; Della Casa, Philippe; Studer, Joseph (2011). Airolo-Madrano « In Grop », Haute Léventine (Tessin, Suisse) : première esquisse de l’espace archéologique et du paléoenvironnement d’un site montagnard aux âges du Bronze et du Fer. In: Studer, Jacqueline; David-Elbiali, Mireille; Besse, Marie. Paysage Landschaft Paesaggio. Actes du colloque de Genève 2007. Lausanne: Cahiers d’archéologie romande, 83-92.
dos Santos, L L; de Assis, J B; Reis, A H D O; Scliar, M D O; Carvalho, M R S; Vaintraub, M T; Vaintraub, P (2011). Allele distribution of six STR/miniSTR loci (CD4, FABP2, D12S391, D14S1434, D22S1045 and D10S1248) for forensic purposes in Southeastern Brazil. Annals of Human Biology, 38(1):110-113.
Jacquat, Christiane (2011). Analyse carpologique d’échantillons de l’âge du Bronze. In: Schopfer Luginbuhl, Anne; Nitu, Claudia; Rychner-Faraggi, Anne-Marie; Poncet Schmid, Marie; Blomjous, Carole; Nuoffer, Pascal. Le cadre environnemental et les occupations du Néolithique au Bronze moyen. Lausanne: Cahiers d’archéologie romande, 74-77.
Schreiner, Sabrina A. Analysis of in vitro growth and characterisation of metabolic pathways of Mycoplasma suis linked to pathogenesis. 2011, University of Zurich, Faculty of Science.
Gasser, I; Cardinale, M; Müller, H; Heller, S; Eberl, L; Lindenkamp, N; Kaddor, C; Steinbüchel, A; Berg, G (2011). Analysis of the endophytic lifestyle and plant growth promotion of Burkholderia terricola ZR2-12. Plant and Soil, 347(1-2):125-136.
Svercel, M; Saladin, B; van Moorsel, S J; Wolf, S; Bagheri, Homayoun C (2011). Antagonistic interactions between filamentous heterotrophs and the cyanobacterium Nostoc muscorum. BMC Research Notes, 4:357.
Araújo, W L; Nunes-Nesi, A; Osorio, S; Usadel, B; Fuentes, D; Nagy, R; Balbo, I; Lehmann, M; Studart-Witkowski, C; Tohge, T; Martinoia, E; Jordana, X; Damatta, F M; Fernie, A R (2011). Antisense inhibition of the iron-sulphur subunit of succinate dehydrogenase enhances photosynthesis and growth in tomato via an organic acid-mediated effect on stomatal aperture. Plant Cell, 23(2):600-627.
El-Kasmi, F; Pacher, T; Strompen, G; Stierhof, Y D; Müller, L M; Koncz, C; Mayer, U; Jürgens, G (2011). Arabidopsis SNARE protein SEC22 is essential for gametophyte development and maintenance of Golgi-stack integrity. The Plant Journal, 66(2):268-279.
Song, W-Y; Choi, K-S; Alexis, D A; Martinoia, E; Lee, Y (2011). Brassica juncea plant cadmium resistance 1 protein (BjPCR1) facilitates the radial transport of calcium in the root. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 108(49):19808-19813.
Weisskopf, L; Heller, S; Eberl, L (2011). Burkholderia species are major inhabitants of white lupin cluster roots. Applied and Environmental Microbiology, 77(21):7715-7720.
Ramos, M S; Abele, R; Nagy, R; Grotemeyer, M S; Tampé, R; Rentsch, D; Martinoia, E (2011). Characterization of a transport activity for long-chain peptides in barley mesophyll vacuoles. Journal of Experimental Botany, 62(7):2403-2410.
Hörtensteiner, S; Kräutler, B (2011). Chlorophyll breakdown in higher plants. Biochimica et Biophysica Acta, 1807(8):977-988.
Song, W-Y; Hörtensteiner, S; Tomioka, R; Lee, Y; Martinoia, E (2011). Common functions or only phylogenetically related? The large family of PLAC8 motif-containing/PCR genes. Molecules and Cells, 31(1):1-7.
Oberhaensli, S; Parlange, F; Buchmann, J P; Jenny, F H; Abbott, J C; Burgis, T A; Spanu, P D; Keller, B; Wicker, T (2011). Comparative sequence analysis of wheat and barley powdery mildew fungi reveals gene colinearity, dates divergence and indicates host-pathogen co-evolution. Fungal Genetics And Biology, 48(3):327 - 334.
Njau, P N. Comprehensive analysis and initial exploitation of resistance to wheat stem rust race Ug99. 2011, University of Zurich, Faculty of Science.
Saito, Hideyuki; Sese, Jun; Shimizu-Inatsugi, Rie; Kamimura, Shoko; Yamada, Tadayasu; Shimizu, Kentaro K (2011). Development of DNA microarray for Fagus crenata. Forest Tree Breeding of Hokkaido, 54(2):11-14.
Zeller, Simon Lukas. Ecology of genetically modified wheat: performance, resistance costs, mixture effects and gene flow. 2011, University of Zurich, Faculty of Science.
Furrer, H (2011). Eiszeiten und Klimawandel im Wehntal der vergangenen 200 000 Jahre. Niederweningen: Stiftung Mammutmuseum.
Baroux, C; Raissig, M T; Grossniklaus, U (2011). Epigenetic regulation and reprogramming during gamete formation in plants. Current Opinion in Genetics & Development, 21(2):124-133.
Juhas, M; Eberl, L; Glass, J I (2011). Essence of life: essential genes of minimal genomes. Trends in Cell Biology, 21(10):562-568.
Schlüter, P M; Ruas, P M; Kohl, G; Ruas, D F; Stuessy, T F; Paulus, H F (2011). Evidence for progenitor-derivative speciation in sexually deceptive orchids. Annals of Botany, 108(5):895-906.
Kirioukhova, O; Johnston, A J; Kleen, D; Kägi, C; Baskar, R; Moore, J M; Bäumlein, H; Gross-Hardt, R; Grossniklaus, U (2011). Female gametophytic cell specification and seed development require the function of the putative Arabidopsis INCENP ortholog WYRD. Development, 138(16):3409-3420.
Brukhin, V B; Jaciubek, M; Bolaños Carpio, A; Kuzmina, V; Grossniklaus, U (2011). Female gametophytic mutants of Arabidopsis thaliana identified in a gene trap insertional mutagenesis screen. International Journal of Developmental Biology, 55(1):73-84.
Xu, S; Schlüter, P M; Scopece, G; Breitkopf, H; Gross, K; Cozzolino, S; Schiestl, F P (2011). Floral isolation is the main reproductive barrier among closely related sexually deceptive orchids. Evolution, 65(9):2606-2620.
Wicker, Thomas; Mayer, K F X; Gundlach, H; Martis, M; Steuernagel, B; Scholz, Uwe; Simková, H; Kubaláková, M; Choulet, F; Taudien, S; Platzer, M; Feuillet, C; Fahima, T; Budak, H; Dolezel, J; Keller, B; Stein, N (2011). Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives. The Plant Cell, 23(5):1706-1718.
Kretzschmar, T; Burla, B; Lee, Y; Martinoia, E; Nagy, R (2011). Functions of ABC transporters in plants. Essays in Biochemistry, 50(1):145-60.
Muller, B (2011). Generic signal-specific responses: cytokinin and context-dependent cellular responses. Journal of Experimental Botany, 62(10):3273-3288.
Wichmann, Fabienne. Genetic characterization of the interaction between Italian ryegrass (Lolium multiflorum Lam.) and Xanthomonas translucens pv. graminis. 2011, University of Zurich, Faculty of Science.
Chauhan, Harsh; Khurana, Neetika; Agarwal, Pinky; Khurana, Paramjit (2011). Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Molecular Genetics and Genomics, 286(2):171-187.
Tsuchimatsu, Takashi; Shimizu, Kentaro K (2011). How the model species Arabidopsis thaliana became self-fertilizing: evolution of breeding systems revealed by DNA sequence information. Kagaku To Seibutsu, 49(6):364-366.
Chauhan, Harsh; Khurana, Neetika; Tyagi, Akhilesh K; Khurana, Jitendra P; Khurana, Paramjit (2011). Identification and characterization of high temperature stress responsive genes in bread wheat (Triticum aestivum L.) and their regulation at various stages of development. Plant molecular biology, 75(1-2):35-51.
McKeown, P C; Laouielle-Duprat, S; Prins, P; Wolff, P; Schmid, M W; Donoghue, M T A; Fort, A; Duszynska, D; Comte, A; Lao, N T; Wennblom, T J; Smant, G; Köhler, C; Grossniklaus, U; Spillane, C (2011). Identification of imprinted genes subject to parent-of-origin specific expression in Arabidopsis thaliana seeds. BMC Plant Biology, 11:113.
Takeuchi, Yayoi; Salcher, Michaela M; Ushio, Masayuki; Shimizu-Inatsugi, Rie; Kobayashi, Masaki J; Diway, Bibian; von Mering, Christian; Pernthaler, Jakob; Shimizu, Kentaro K (2011). In situ enzyme activity in the dissolved and particulate fraction of the fluid from four pitcher plant species of the genus nepenthes. PLoS ONE, 6(9):e25144.
Inhülsen, Silja. Investigations of the Quorum sensing circuitry in "Burkholderia cenocepacia" H111. 2011, University of Zurich, Faculty of Science.
Çullaj, A; Duka, S; Emiri, A; Koni, E; Miho, A; Murtaj, B; Shumka, S; Bachofen, R; Schanz, F; Brandl, H (2011). Limnological study on a newly built drinking water reservoir near Tirana, Albania. Environmental Monitoring and Assessment, 182(1-4):215-232.
Grau, Thomas. Lipoprotein localization signals and evaluation of novel drug targets to combat tuberculosis. 2011, University of Zurich, Faculty of Science.
Meyer, S; Scholz-Starke, J; De Angeli, A; Kovermann, P; Burla, B; Gambale, F; Martinoia, E (2011). Malate transport by the vacuolar AtALMT6 channel in guard cells is subject to multiple regulation. The Plant Journal, 67(2):247-257.
Autran, D; Baroux, C; Raissig, M T; Lenormand, T; Wittig, M; Grob, S; Steimer, A; Barann, M; Klostermeier, U C; Leblanc, O; Vielle-Calzada, J P; Rosenstiel, P; Grimanelli, D; Grossniklaus, U (2011). Maternal epigenetic pathways control parental contributions to Arabidopsis early embryogenesis. Cell, 145(5):707-719.
Horváth, B; Yeun, L H; Domonkos, A; Halász, G; Gobbato, E; Ayaydin, F; Miró, K; Hirsch, S; Sun, J; Tadege, M; Ratet, P; Mysore, K S; Ané, J M; Oldroyd, G E D; Kaló, P (2011). Medicago truncatula IPD3 is a member of the common symbiotic signaling pathway required for rhizobial and mycorrhizal symbioses. Molecular Plant-Microbe Interactions, 24(11):1345-1358.
Koszegi, D; Johnston, A J; Rutten, T; Czihal, A; Altschmied, L; Kumlehn, J; Wüst, S E J; Kirioukhova, O; Gheyselinck, J; Grossniklaus, U; Bäumlein, H (2011). Members of the RKD transcription factor family induce an egg cell-like gene expression program. Plant Journal, 67(2):280-291.
Eberl, L; Riedel, K (2011). Mining quorum sensing regulated proteins - Role of bacterial cell-to-cell communication in global gene regulation as assessed by proteomics. Proteomics, 11(15):3070-3085.
Polinceusz, Anna Izabela. Molecular characterisation of the Arabidopsis TT12 MATE protein and functional analysis of other plant MATE transporters. 2011, University of Zurich, Faculty of Science.
Capoen, W; Sun, J; Wysham, D; Otegui, M S; Venkateshwaran, M; Hirsch, S; Miwa, H; Downie, J A; Morris, R J; Ané, J M; Oldroyd, G E D (2011). Nuclear membranes control symbiotic calcium signaling of legumes. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 108(34):14348-14353.
Kong, J; Park, J; Choi, H; Burla, B; Kretschmar, T; Lee, Y; Martinoia, E (2011). Plant ABC Transporters. The arabidopsis book, 9:e0153.
Grossniklaus, U (2011). Plant germline development: a tale of cross-talk, signaling, and cellular interactions. Sexual Plant Reproduction, 24(2):91-95.
Bailly, Aurélien; Yang, Haibing; Martinoia, Enrico; Geisler, Markus; Murphy, Angus S (2011). Plant lessons: exploring ABCB functionality through structural modeling. Frontiers in Plant Science, 2:108.
Richter, S; Müller, L M; Stierhof, Y D; Mayer, U; Takada, N; Kost, B; Vieten, A; Geldner, N; Koncz, C; Jürgens, G (2011). Polarized cell growth in Arabidopsis requires endosomal recycling mediated by GBF1-related ARF exchange factors. Nature Cell Biology, 14(1):80-86.
Takeuchi, Yayoi; Shimizu, Kentaro K (2011). Potential application of pollen genotyping for evolutionary genetic and genomic studies: linkage/recombination analysis and haplotype sequencing, in Ecological Research Monographs ‘Single-Pollen Genotyping’. In: Isagi, Y; Suyama, Y. Single-Pollen Genotyping. Tokyo [etc.]: Springer, 111-123.
Gattlen, J. Production of standardized biofilms with isolates from household washing machines. 2011, University of Zurich, Faculty of Science.
Felekis, D (2011). Quantifying growth mechanics of living, growing plant cells in situ using microrobotics. Micro & Nano Letters, 6(5):311.
Jang, G; Yi, K; Pires, N D; Menand, B; Dolan, L (2011). RSL genes are sufficient for rhizoid system development in early diverging land plants. Development, 138(11):2273-2281.
Egert, A. Raffinose Oligosaccharide Catabolism in Arabidopsis thaliana. 2011, University of Zurich, Faculty of Science.
Raissig, M T; Baroux, C; Grossniklaus, U (2011). Regulation and flexibility of genomic imprinting during seed development. Plant Cell, 23(1):16-26.
Toppino, L; Kooiker, M; Lindner, M; Dreni, L; Rotino, G L; Kater, M M (2011). Reversible male sterility in eggplant (Solanum melongena L.) by artificial microRNA-mediated silencing of general transcription factor genes. Plant Biotechnology Journal, 9(6):684-692.
Schulthess, B. Role of the sigB-dependent yabJ-spoVG operon in the regulation of antibiotic resistance and virulence determinants in Staphylococcus aureus. 2011, University of Zurich, Faculty of Medicine.
Datta, S; Kim, C M; Pernas, M; Pires, N D; Proust, H; Tam, T; Vijayakumar, P; Dolan, L (2011). Root hairs: development, growth and evolution at the plant-soil interface. Plant and Soil, 346(1-2):1-14.
Singh, B R; Gupta, S K; Azaizeh, H; Shilev, S; Sudre, D; Song, W Y; Martinoia, E; Mench, M (2011). Safety of food crops on land contaminated with trace elements. Journal of the Science of Food and Agriculture, 91(8):1349-1366.
Paszkowski, J; Grossniklaus, U (2011). Selected aspects of transgenerational epigenetic inheritance and resetting in plants. Current Opinion in Plant Biology, 14(2):195-203.
Hedhly, A (2011). Sensitivity of flowering plant gametophytes to temperature fluctuations. Environmental and Experimental Botany, 74:9-16.
Kessler, S A; Grossniklaus, U (2011). She's the boss: signaling in pollen tube reception. Current Opinion in Plant Biology, 14(5):622-627.
Schlüter, P M; Xu, S; Gagliardini, V; Whittle, E; Shanklin, J; Grossniklaus, U; Schiestl, F P (2011). Stearoyl-acyl carrier protein desaturases are associated with floral isolation in sexually deceptive orchids. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 108(14):5696-5701.
Schneider, T; Schmid, E; de Castro, J V; Cardinale, M; Eberl, L; Grube, M; Berg, G; Riedel, K (2011). Structure and function of the symbiosis partners of the lung lichen (Lobaria pulmonaria L. Hoffm.) analyzed by metaproteomics. Proteomics, 11(13):2752-2756.
Horňák, Karel; Zeder, Michael; Blom, Judith F; Posch, Thomas; Pernthaler, Jakob (2011). Suboptimal light conditions negatively affect the heterotrophy of Planktothrix rubescens but are beneficial for accompanying Limnohabitans spp. Environmental Microbiology, 14(3):765-778.
Dumbliauskas, E; Lechner, E; Jaciubek, M; Berr, A; Pazhouhandeh, M; Alioua, M; Cognat, V; Brukhin, V; Koncz, C; Grossniklaus, U; Molinier, J; Genschik, P (2011). The Arabidopsis CUL4-DDB1 complex interacts with MSI1 and is required to maintain MEDEA parental imprinting. The EMBO Journal, 30(4):731-743.
O'Grady, E P; Nguyen, D T; Weisskopf, L; Eberl, L; Sokol, P A (2011). The Burkholderia cenocepacia LysR-type transcriptional regulator ShvR influences expression of quorum-sensing, protease, type II secretion, and afc genes. Journal of Bacteriology, 193(1):163-176.
Bandaranayake, P C G; Tomilov, A; Tomilova, N B; Ngo, Q A; Wickett, N; dePamphilis, C W; Yoder, J I (2011). The TvPirin gene is necessary for haustorium development in the parasitic plant Triphysaria versicolor. Plant Physiology, 158(2):1046-1053.
Takeuchi, Yayoi; Shimizu, Kentaro K (2011). The study of microbial diversity and function using metagenomics. Shuseibutsugaku kenkyū, 34:123-138.
Boisson-Dernier, A; Kessler, S A; Grossniklaus, U (2011). The walls have ears: the role of plant CrRLK1Ls in sensing and transducing extracellular signals. Journal of Experimental Botany, 62(5):1581-1591.
Jordan, T; Seeholzer, S; Schwizer, S; Töller, A; Somssich, I E; Keller, B (2011). The wheat Mla homologue TmMla1 exhibits an evolutionarily conserved function against powdery mildew in both wheat and barley. The Plant Journal, 65(4):610-621.
Tohge, T; Ramos, M S; Nunes-Nesi, A; Mutwil, M; Giavalisco, P; Steinhauser, D; Schellenberg, M; Willmitzer, L; Persson, S; Martinoia, E; Fernie, A R (2011). Toward the storage metabolome: profiling the barley vacuole. Plant Physiology, 157(3):1469-82.
Schmidt, A; Wuest, S E; Vijverberg, K; Baroux, C; Kleen, D; Grossniklaus, U (2011). Transcriptome analysis of the Arabidopsis megaspore mother cell uncovers the importance of RNA helicases for plant germline development. PLoS Biology, 9(9):e1001155.
Brunner, S; Hurni, S; Herren, G; Kalinina, O; von Burg, S; Zeller, S L; Schmid, B; Winzeler, M; Keller, B (2011). Transgenic Pm3b wheat lines show resistance to powdery mildew in the field. Plant Biotechnology Journal, 9(8):897-910.
von Burg, Simone Katrin. Transgenic wheat and non-target impacts on insect herbivores and food webs. 2011, University of Zurich, Faculty of Science.
Zust, Tobias; Joseph, Bindu; Shimizu, Kentaro K; Kliebenstein, Daniel J; Turnbull, Lindsay A (2011). Using knockout mutants to reveal the growth costs of defensive traits. Proceedings of the Royal Society B: Biological Sciences, 278(1718):2598-2603.
Salcher, Michaela M; Pernthaler, Jakob; Frater, Nakita; Posch, Thomas (2011). Vertical and longitudinal distribution patterns of different bacterioplankton populations in a canyon-shaped, deep prealpine lake. Limnology and Oceanography, 56(6):2027-2039.
Blom, D; Fabbri, C; Eberl, L; Weisskopf, L (2011). Volatile-mediated killing of Arabidopsis thaliana by Bacteria is mainly due to hydrogen cyanide. Applied and Environmental Microbiology, 77(3):1000-1008.
Schmid, Roger. Characterization of Arabidopsis WYR and its Potential Role in Non-Random Sister Chromatid Segregation. 2010, University of Zurich, Faculty of Science.
Konaka, Yoshiko; Fukuzaki, Mutsumi; Yoshida, Masaaki; Shimizu, Kentaro K; Ogura, Atsushi; Sese, Jun (2010). Gene duplication detection with frequent pattern analysis. IPSJ SIG Technical Reports, 23:1-8.
Singh, K; Chhuneja, P; Singh, I; Sharma, S K; Garg, T; Garg, M; Keller, B; Dhaliwal, H S (2010). Molecular mapping of cereal cyst nematode resistance in Triticum monococcum L. and its transfer to the genetic background of cultivated wheat. Euphytica, 176(2):213-222.
Zipfel, Cyril; Robatzek, Silke (2010). Pathogen-Associated Molecular Pattern-Triggered Immunity: Veni, Vidi…? Plant Physiology, 154(2):551-554.
Malinovsky, Frederikke G; Brodersen, Peter; Fiil, Berthe Katrine; McKinney, Lea Vig; Thorgrimsen, Stephan; Beck, Martina; Nielsen, H Bjørn; Pietra, Stefano; Zipfel, Cyril; Robatzek, Silke; Petersen, Morten; Hofius, Daniel; Mundy, John (2010). Lazarus1, a DUF300 Protein, Contributes to Programmed Cell Death Associated with Arabidopsis acd11 and the Hypersensitive Response. PLoS ONE, 5(9):e12586.
Tsuchimatsu, Takashi; Shimizu, Kentaro K (2010). From outcrossing to selfing: the evolutionary transition of reproductive systems in Arabidopsis. Iden:7-12.
Carranza, P; Grunau, A; Schneider, T; Hartmann, I; Lehner, Angelika; Stephan, Roger; Gehrig, P; Grossmann, J; Groebel, K; Hoelzle, L E; Eberl, L; Riedel, K (2010). A gel-free quantitative proteomics approach to investigate temperature adaptation of the food-borne pathogen Cronobacter turicensis 3032. Proteomics, 10(18):3248-3261.
Tsuchimatsu, Takashi; Shimizu, Kentaro K (2010). The genetic basis for the evolution of self-compatibility in Arabidopsis. BSJ Review:90-95.
Boutrot, Freddy; Segonzac, Cécile; Chang, Katherine N; Qiao, Hong; Ecker, Joseph R; Zipfel, Cyril; Rathjen, John P (2010). Direct transcriptional control of the Arabidopsis immune receptor FLS2 by the ethylene-dependent transcription factors EIN3 and EIL1. Proceedings of the National Academy of Sciences of the United States of America, 107(32):14502-14507.
Archer, C R; Koomoa, D L T; Mitsunaga, E M; Clerc, J; Shimizu, M; Kaiser, M; Schellenberg, B; Dudler, R; Bachmann, A S (2010). Syrbactin class proteasome inhibitor-induced apoptosis and autophagy occurs in association with p53 accumulation and Akt/PKB activation in neuroblastoma. Biochemical Pharmacology, 80(2):170-178.
Zeller, S L; Kalinina, O; Brunner, S; Keller, B; Schmid, B (2010). Transgene x environment interactions in genetically modified wheat. PLoS ONE, 5(7):e11405.
Aikawa, Shinichiro; Kobayashi, Masaki J; Satake, Akiko; Shimizu, Kentaro K; Kudoh, Hiroshi (2010). Robust control of the seasonal expression of the Arabidopsis FLC gene in a fluctuating environment. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 107(25):11632-11637.
Choulet, F; Wicker, T; Rustenholz, C; Paux, E; Salse, J; Leroy, P; Schlub, S; Le Paslier, M C; Magdelenat, G; Gonthier, C; Couloux, A; Budak, H; Breen, J; Pumphrey, M; Liu, S; Kong, X; Jia, J; Gut, M; Brunel, D; Anderson, J A; Gill, B S; Appels, R; Keller, B; Feuillet, C (2010). Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces. Plant Cell, 22(6):1686-1701.
Schneider, T; Gerrits, B; Gassmann, R; Schmid, E; Gessner, M O; Richter, A; Battin, T; Eberl, L; Riedel, K (2010). Proteome analysis of fungal and bacterial involvement in leaf litter decomposition. Proteomics, 10(9):1819-1830.
Tsuchimatsu, Takashi; Suwabe, Keita; Shimizu-Inatsugi, Rie; Isokawa, Sachiyo; Pavlidis, Pavlos; Städler, Thomas; Suzuki, Go; Takayama, Seiji; Watanabe, Masao; Shimizu, Kentaro K (2010). Evolution of self-compatibility in Arabidopsis by a mutation in the male specificity gene. Nature, 464(7293):1342-1346.
Lacombe, Séverine; Rougon-Cardoso, Alejandra; Sherwood, Emma; Peeters, Nemo; Dahlbeck, Douglas; van Esse, H Peter; Smoker, Matthew; Rallapalli, Ghanasyam; Thomma, Bart P H J; Staskawicz, Brian; Jones, Jonathan D G; Zipfel, Cyril (2010). Interfamily transfer of a plant pattern-recognition receptor confers broad-spectrum bacterial resistance. Nature Biotechnology, 28(4):365-369.
Zeder, M; Van den Wyngaert, S; Köster, O; Felder, K M; Pernthaler, J (2010). Automated quantification and sizing of unbranched filamentous cyanobacteria by model based object oriented image analysis. Applied and Environmental Microbiology, 76(5):1615-1622.
Srinivas, N; Jetter, P; Ueberbacher, B J; Werneburg, M; Zerbe, K; Steinmann, J; Van der Meijden, B; Bernardini, F; Lederer, A; Dias, R L A; Misson, P E; Henze, H; Zumbrunn, J; Gombert, F O; Obrecht, D; Hunziker, P; Schauer, S; Ziegler, U; Käch, A; Eberl, L; Riedel, K; DeMarco, S J; Robinson, J A (2010). Peptidomimetic antibiotics target outer membrane biogenesis in Pseudomonas aeruginosa. Science, 327(5968):1010-1013.
Schneider, T; Riedel, K (2010). Environmental proteomics: Analysis of structure and function of microbial communities. Proteomics, 10(4):785-798.
Frey, J E; Pasquer, F; Pelludat, C; Duffy, B (2010). A high-density random-oligonucleotide genome microarray for universal diagnostics. EPPO Bulletin, 40(1):40-45.
Breen, J; Wicker, T; Kong, X; Juncheng, Z; Ma, W; Feuillet, C; Paux, E; Appels, R; Bellgard, M (2010). A highly conserved gene island of three genes on chromosome 3B of hexaploid wheat: diverse gene function and genomic structure maintained in a tightly linked block. BMC Plant Biology, 10:98.
Moretti, M; Grunau, A; Minerdi, D; Gehrig, P; Roschitzki, B; Eberl, L; Garibaldi, A; Gullino, M L; Riedel, K (2010). A proteomics approach to study synergistic and antagonistic interactions of the fungal-bacterial consortium Fusarium oxysporum wild-type MSA 35. Proteomics, 10(18):3292-3320.
Bandaranayake, P C G; Filappova, T; Tomilov, A; Tomilova, N B; Jamison-McClung, D; Ngo, Q; Inoue, K; Yoder, J I (2010). A single-electron reducing quinone oxidoreductase is necessary to induce haustorium development in the root parasitic plant Triphysaria. Plant Cell, 22(4):1404-1419.
Mur, L A J; Aubry, S; Mondhe, M; Kingston-Smith, A; Gallagher, J; Timms-Taravella, E; James, C; Papp, I; Hörtensteiner, S; Thomas, H; Ougham, H (2010). Accumulation of chlorophyll catabolites photosensitizes the hypersensitive response elicited by Pseudomonas syringae in Arabidopsis. The New Phytologist, 188(1):161-174.
Fakheran, S; Paul-Victor, C; Heichinger, C; Schmid, B; Grossniklaus, U; Turnbull, L A (2010). Adaptation and extinction in experimentally fragmented landscapes. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 107(44):19120-19125.
Blom, J F; Horňák, K; Simek, K; Pernthaler, J (2010). Aggregate formation in a freshwater bacterial strain induced by growth state and conspecific chemical cues. Environmental Microbiology, 12(9):2486-2495.
Romero, D; Aguilar, C; Losick, R; Kolter, R (2010). Amyloid fibers provide structural integrity to Bacillus subtilis biofilms. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 107(5):2230-2234.
Felder, Kathrin M. Analysis of the pathogenesis of severe anaemia of pigs due to Mycoplasma suis infection. 2010, University of Zurich, Faculty of Science.
Blom, J F; Pernthaler, J (2010). Antibiotic effects of three strains of chrysophytes (Ochromonas, Poterioochromonas) on freshwater bacterial isolates. FEMS Microbiology Ecology, 71(2):281-290.
Song, W Y; Choi, K S; Kim, D Y; Geisler, M; Park, J; Vincenzetti, V; Schellenberg, M; Kim, S H; Lim, Y P; Noh, E W; Lee, Y; Martinoia, E (2010). Arabidopsis PCR2 is a zinc exporter involved in both zinc extrusion and long-distance zinc transport. Plant Cell, 22(7):2237-2252.
Ruzicka, K; Strader, L C; Bailly, A; Yang, H; Blakeslee, J; Langowski, L; Nejedlá, E; Fujita, H; Itoh, H; Syono, K; Hejátko, J; Gray, W M; Martinoia, E; Geisler, M; Bartel, B; Murphy, A S; Friml, J (2010). Arabidopsis PIS1 encodes the ABCG37 transporter of auxinic compounds including the auxin precursor indole-3-butyric acid. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 107(23):10749-10753.
Wuest, S E; Vijverberg, K; Schmidt, A; Weiss, M; Gheyselinck, J; Lohr, M; Wellmer, F; Rahnenführer, J; von Mering, C; Grossniklaus, U (2010). Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes. Current Biology, 20(6):506-512.
Song, W Y; Park, J; Mendoza-Cózatl, D G; Suter-Grotemeyer, M; Shim, D; Hörtensteiner, S; Geisler, M; Weder, B; Rea, P A; Rentsch, D; Schroeder, J I; Lee, Y; Martinoia, E (2010). Arsenic tolerance in Arabidopsis is mediated by two ABCC-type phytochelatin transporters. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 107(49):21187-21192.
Meyer, S; Mumm, P; Imes, D; Endler, A; Weder, B; Al-Rasheid, K A S; Geiger, D; Marten, I; Martinoia, E; Hedrich, R (2010). AtALMT12 represents an R-type anion channel required for stomatal movement in Arabidopsis guard cells. The Plant Journal, 63(6):1054-1062.
Zeder, M; Kohler, E; Pernthaler, J (2010). Automated quality assessment of autonomously acquired microscopic images of fluorescently stained bacteria. Cytometry Part A, 77(1):76-85.
Pasquer, F; Pelludat, C; Duffy, B; Frey, J E (2010). Broad spectrum microarray for fingerprint-based bacterial species identification. BMC Biotechnology, 10:13.
Aguilar, C; Carlier, A; Riedel, K; Eberl, L (2010). Cell-cell communication in biofilms of gram-negative bacteria. In: Krämer, R; Jung, K. Bacterial signaling. Weinheim: Wiley Blackwell, 23-40.
Blom, Judith F; Höger, Stefan J; Jüttner, Friedrich (2010). Characterization of bioactive cyclic oligopeptides of freshwater cyanobacteria (microcystins, cyanopeptolins, cyclamides). In: Bagchi, S N; Kleiner, D; Mohanty, P. Protocols on algal and cyanobacterial research. New Delhi, India: Narosa Publishing, 53-70.
Pien, S; Grossniklaus, U (2010). Chromatin immunoprecipitation protocol for histone modifications and protein-DNA binding analyses in Arabidopsis. Methods in Molecular Biology, 631:209-220.
Nair, S K; Wang, N; Turuspekov, Y; Pourkheirandish, M; Sinsuwongwat, S; Chen, G; Sameri, M; Tagiri, A; Honda, I; Watanabe, Y; Kanamori, H; Wicker, T; Stein, N; Nagamura, Y; Matsumoto, T; Komatsuda, T (2010). Cleistogamous flowering in barley arises from the suppression of microRNA-guided HvAP2 mRNA cleavage. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 107(1):490-495.
Manickavelu, A; Kawaura, K; Oishi, K; Tadasu, S I; Kohara, Y; Yahiaoui, N; Keller, B; Suzuki, A; Yano, K; Ogihara, Y (2010). Comparative gene expression analysis of susceptible and resistant near-isogenic lines in common wheat infected by Puccinia triticina. DNA Research, 17(4):211-222.
Kessler, S A; Shimosato-Asano, H; Keinath, N F; Wuest, S E; Ingram, G; Panstruga, R; Grossniklaus, U (2010). Conserved molecular components for pollen tube reception and fungal invasion. Science, 330(6006):968-971.
Lumjiaktase, P; Aguilar, C; Battin, T; Riedel, K; Eberl, L (2010). Construction of self-transmissible green fluorescent protein-based biosensor plasmids and their use for identification of n-acyl homoserine-producing bacteria in lake sediments. Applied and Environmental Microbiology, 76(18):6119-6127.
Clerc, J; Schellenberg, B; Groll, M; Bachmann, A S; Huber, R; Dudler, R; Kaiser, M (2010). Convergent synthesis and biological evaluation of syringolin a and derivatives as eukaryotic 20s proteasome inhibitors. European Journal of Organic Chemistry, 2010(21):3991-4003.
González-Vera, A D; Bernardes-de-Assis, J; Zala, M; McDonald, B A; Correa-Victoria, F; Graterol-Matute, E J; Ceresini, P C (2010). Divergence between sympatric rice- and maize-infecting populations of Rhizoctonia solani AG-1 IA from Latin America. Phytopathology, 100(2):172-182.
Seeholzer, Sabine; Tsuchimatsu, Takashi; Jordan, Tina; Bieri, Stéphane; Pajonk, Simone; Yang, Wenxiang; Jahoor, Ahmed; Shimizu, Kentaro K; Keller, Beat; Schulze-Lefert, Paul (2010). Diversity at the Mla powdery mildew resistance locus from cultivated barley reveals sites of positive selection. Molecular Plant-Microbe Interactions, 23(4):497-509.
Johnston, A J; Kirioukhova, O; Barrell, P J; Rutten, T; Moore, J M; Baskar, R; Grossniklaus, U; Gruissem, W (2010). Dosage-sensitive function of retinoblastoma related and convergent epigenetic control are required during the Arabidopsis life cycle. PLoS Genetics, 6(6):e1000988.
Pillot, M; Baroux, C; Vazquez, M A; Autran, D; Leblanc, O; Vielle-Calzada, J P; Grossniklaus, U; Grimanelli, D (2010). Embryo and endosperm inherit distinct chromatin and transcriptional states from the female gametes in Arabidopsis. The Plant Cell, 22(2):307-320.
Cho, J I; Burla, B; Lee, D W; Ryoo, N; Hong, S K; Kim, H B; Eom, J S; Choi, S B; Cho, M H; Bhoo, S H; Hahn, T R; Neuhaus, H E; Martinoia, E; Jeon, J S (2010). Expression analysis and functional characterization of the monosaccharide transporters, OsTMTs, involving vacuolar sugar transport in rice (Oryza sativa). The New Phytologist, 186(3):657-668.
Vu, G T H; Wicker, T; Buchmann, J P; Chandler, P M; Matsumoto, T; Graner, A; Stein, N (2010). Fine mapping and syntenic integration of the semi-dwarfing gene sdw3 of barley. Functional & Integrative Genomics, 10(4):509-521.
Peters, S; Egert, A; Stieger, B; Keller, F (2010). Functional identification of Arabidopsis ATSIP2 (At3g57520) as an alkaline α-galactosidase with a substrate specificity for raffinose and an apparent sink-specific expression patter. Plant & Cell Physiology, 51(10):1815-1819.
Banu, Liliana Danusia. Gene expression in Streptococcus mutans biofilms. 2010, University of Zurich, Faculty of Science.
Hartmann, I; Carranza, P; Stephan, Roger; Lehner, Angelika; Eberl, L; Riedel, K (2010). Genes involved in Cronobacter sakazakii biofilm formation. Applied and Environmental Microbiology, 76(7):2251-2261.
Bhullar, N K; Mackay, M; Keller, B (2010). Genetic diversity of the Pm3 powdery mildew resistance alleles in wheat gene bank accessions as assessed by molecular markers. Diversity, 2(5):768-786.
Spanu, P D; Abbott, J C; Amselem, J; Burgis, T A; Soanes, D M; Stüber, K; van Themaat, E Ver Loren; Brown, J K M; Butcher, S A; Gurr, S J; Lebrun, M H; Ridout, C J; Schulze-Lefert, P; Talbot, N J; Ahmadinejad, N; Ametz, C; Barton, G R; Benjdia, M; Bidzinski, P; Bindschedler, L V; Both, M; Brewer, M T; Cadle-Davidson, L; Cadle-Davidson, M M; Collemare, J; Cramer, R; Frenkel, O; Godfrey, D; Harriman, J; Hoede, C; King, B C; Klages, S; Kleemann, J; Knoll, D; Koti, P S; Kreplak, J; López-Ruiz, F J; Lu, X; Maekawa, T; Mahanil, S; Micali, C; Milgroom, M G; Montana, G; Noir, S; O'Connell, R J; Oberhaensli, S; Parlange, F; Pedersen, C; Quesneville, H; Reinhardt, R; Rott, M; Sacristán, S; Schmidt, S M; Schön, M; Skamnioti, P; Sommer, H; Stephens, A; Takahara, H; Thordal-Christensen, H; Vigouroux, M; Wessling, R; Wicker, T; Panstruga, R (2010). Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science, 330(6010):1543-1546.
International Brachypodium Initiative; Vogel, J P; Wicker, T; Buchmann, J P; et al (2010). Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature, 463(7282):763-768.
Njau, P N; Jin, Y; Huerta-Espino, J; Keller, B; Singh, R P (2010). Identification and evaluation of sources of resistance to stem rust race Ug99 in wheat. Plant Disease, 94(4):413-419.
Honegger, R (2010). In memoriam Prof. Dr. Heinrich Zoller (1923-2009). Meylania, 44:35-37.
Ilegems, M; Douet, V; Meylan-Bettex, M; Uyttewaal, M; Brand, L; Bowman, J L; Stieger, P A (2010). Interplay of auxin, KANADI and Class III HD-ZIP transcription factors in vascular tissue formation. Development, 137(6):975-984.
Meyer, S; De Angeli, A; Fernie, A R; Martinoia, E (2010). Intra- and extra-cellular excretion of carboxylates. Trends in Plant Science, 15(1):40-47.
Brunner, S; Hurni, S; Streckeisen, P; Mayr, G; Albrecht, M; Yahiaoui, N; Keller, B (2010). Intragenic allele pyramiding combines different specificities of wheat Pm3 resistance alleles. The Plant Journal, 64(3):433-445.
Shabarova, T; Pernthaler, J (2010). Karst pools in subsurface environments: collectors of microbial diversity or temporary residence between habitat types. Environmental Microbiology, 12(4):1061-1074.
Aguilar, C; Vlamakis, H; Guzman, A; Losick, R; Kolter, R (2010). Kind is a checkpoint protein linking spore formation to extracellular-matrix production in bacillus subtilis biofilms. mBio, 1(1):e00035.
Alonso-Sáez, L; Pinhassi, J; Pernthaler, J; Gasol, J M (2010). Leucine-to-carbon empirical conversion factor experiments: does bacterial community structure have an influence? Environmental Microbiology, 12(11):2988-2997.
Golubov, A; Yao, Y; Maheshwari, P; Bilichak, A; Boyko, A; Belzile, F; Kovalchuk, I (2010). Microsatellite instability in Arabidopsis increases with plant development. Plant Physiology, 154(3):1415-1427.
Müller, B; Grossniklaus, U (2010). Model organisms--A historical perspective. Journal of Proteomics, 73(11):2054-2063.
Ringli, C (2010). Monitoring the outside: cell wall-sensing mechanisms. Plant Physiology, 153(4):1445-1452.
Gademann, K; Portmann, C; Blom, J F; Zeder, M; Jüttner, F (2010). Multiple toxin production in the cyanobacterium microcystis: isolation of the toxic protease inhibitor cyanopeptolin 1020. Journal of Natural Products, 73(5):980-984.
Lituiev, D S; Kiyamova, R G (2010). Mutations in the gene of human type IIb sodium-phosphate cotransporter SLC34A2. Biopolymers and Cell = Biopolimery i Kletka, 26(1):13-22.
Gröbel, Katrin. New insights into the pathogenesis of the Mycoplasma suis infection. 2010, University of Zurich, Vetsuisse Faculty.
Birbaum, K; Brogioli, R; Schellenberg, M; Martinoia, E; Stark, W J; Günther, D; Limbach, L K (2010). No evidence for cerium dioxide nanoparticle translocation in maize plants. Environmental Science and Technology, 44(22):8718-8723.
Kim, D Y; Jin, J Y; Alejandro, S; Martinoia, E; Lee, Y (2010). Overexpression of AtABCG36 improves drought and salt stress resistance in Arabidopsis. Physiologia Plantarum, 139(2):170-180.
Keinath, N F; Kierszniowska, S; Lorek, J; Bourdais, G; Kessler, S A; Shimosato-Asano, H; Grossniklaus, U; Schulze, W X; Robatzek, S; Panstruga, R (2010). PAMP (pathogen-associated molecular pattern)-induced changes in plasma membrane compartmentalization reveal novel components of plant immunity. The Journal of Biological Chemistry, 285(50):39140-39149.
Kang, J; Hwang, J U; Lee, M; Kim, Y Y; Assmann, S M; Martinoia, E; Lee, Y (2010). PDR-type ABC transporter mediates cellular uptake of the phytohormone abscisic acid. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 107(5):2355-2360.
Wicker, T; Buchmann, J P; Keller, B (2010). Patching gaps in plant genomes results in gene movement and erosion of colinearity. Genome Research, 20(9):1229-1237.
Breuillin, F; Schramm, J; Hajirezaei, M; Ahkami, A; Favre, P; Druege, U; Hauser, B; Bucher, M; Kretzschmar, T; Bossolini, E; Kuhlemeier, C; Martinoia, E; Franken, P; Scholz, Uwe; Reinhardt, D (2010). Phosphate systemically inhibits development of arbuscular mycorrhiza in Petunia hybrida and represses genes involved in mycorrhizal functioning. The Plant Journal, 64(6):1002-1017.
Itten, B; Honegger, R (2010). Population genetics in the homothallic lichen-forming ascomycete Xanthoria parietina. The Lichenologist, 42(06):751-761.
Carranza-Sandmeier, M P. Proteome Analyses of the opportunistic pathogens Bukholderia cenocepacia and Cronobacter turicensis. 2010, University of Zurich, Faculty of Science.
Schellenberg, B; Ramel, C; Dudler, R (2010). Pseudomonas syringae virulence factor syringolin A counteracts stomatal immunity by proteasome inhibition. Molecular Plant-Microbe Interactions, 23(10):1287-1293.
Peters, Shaun W. Raffinose family oligosaccharides (RFOs) are putative abiotic stress protectants: case studies on frost tolerance and water deficit in Ajuga reptans and Arabidopsis thaliana. 2010, University of Zurich, Faculty of Science.
Ehtemam, M H; Rahiminejad, M R; Hojjatollah, S; Tabatabaei, B E S; Krattinger, S G; Keller, B (2010). Relationships among the A genomes of Triticum L. species as evidenced by SSR markers, in Iran. International Journal of Molecular Sciences, 11(11):4309-4325.
Cesco, S; Neumann, G; Tomasi, N; Pinton, R; Weisskopf, L (2010). Release of plant-borne flavonoids into the rhizosphere and their role in plant nutrition. Plant and Soil, 329(1-2):1-25.
Blom, J F; Zimmermann, Y S; Ammann, T; Pernthaler, J (2010). Scent of danger: floc formation by a freshwater bacterium is induced by supernatants from a predator-prey coculture. Applied and Environmental Microbiology, 76(18):6156-6163.
Piwosz, K; Pernthaler, J (2010). Seasonal population dynamics and trophic role of planktonic nanoflagellates in coastal surface waters of the Southern Baltic Sea. Environmental Microbiology, 12(2):364-377.
Subramanian, Akshay. Sequence variations in the ribosomal decoding and peptidyl transferase sites determine sensitivity to aminoglycosides and macrolides. 2010, University of Zurich, Faculty of Science.
Salcher, M M; Pernthaler, J; Posch, T (2010). Spatiotemporal distribution and activity patterns of bacteria from three phylogenetic groups in an oligomesotrophic lake. Limnology and Oceanography, 55(2):846-856.
Kiang, L; Heichinger, C; Watt, S; Bähler, J; Nurse, P (2010). Specific replication origins promote DNA amplification in fission yeast. Journal of Cell Science, 123(Pt 18):3047-3051.
Deng, Y; Wu, J; Eberl, L; Zhang, L H (2010). Structural and functional characterization of diffusible signal factor family quorum-sensing signals produced by members of the Burkholderia cepacia complex. Applied and Environmental Microbiology, 76(14):4675-4683.
Kalapala, Sarath Kumar. Study of aminoglycoside antibiotics interaction with eukaryotic ribosomal decoding sites using bacterial hybrid ribosomes. 2010, University of Zurich, Faculty of Science.
Aquea, F; Johnston, A J; Cañon, P; Grossniklaus, U; Arce-Johnson, P (2010). TRAUCO, a Trithorax-group gene homologue, is required for early embryogenesis in Arabidopsis thaliana. Journal of Experimental Botany, 61(4):1215-1224.
Ramos, C G; Sousa, S A; Grilo, A M; Eberl, L; Leitão, J H (2010). The Burkholderia cenocepacia K56-2 pleiotropic regulator Pbr, is required for stress resistance and virulence. Microbial Pathogenesis, 48(5):168-177.
Leiber, R M; John, F; Verhertbruggen, Y; Diet, A; Knox, J P; Ringli, C (2010). The TOR pathway modulates the structure of cell walls in Arabidopsis. Plant Cell, 22(6):1898-1908.
She, W; Lin, W; Zhu, Y; Chen, Y; Jin, W; Yang, Y; Han, N; Bian, H; Zhu, M; Wang, J (2010). The gypsy insulator of Drosophila melanogaster, together with its binding protein suppressor of Hairy-wing, facilitate high and precise expression of transgenes in Arabidopsis thaliana. Genetics, 185(4):1141-1150.
Ringli, C (2010). The hydroxyproline-rich glycoprotein domain of the Arabidopsis LRX1 requires Tyr for function but not for insolubilization in the cell wall. The Plant Journal, 63(4):662-669.
Mendoza-Cózatl, D G; Zhai, Z; Jobe, T O; Akmakjian, G Z; Song, W Y; Limbo, O; Russell, M R; Kozlovskyy, V I; Martinoia, E; Vatamaniuk, O K; Russell, P; Schroeder, J I (2010). Tonoplast-localized Abc2 transporter mediates phytochelatin accumulation in vacuoles and confers cadmium tolerance. Journal of Biological Chemistry, 285(52):40416-40126.
Chaffron, Samuel. Tracing microbes and their genes through the environment: diversity, ecology and evolution. 2010, University of Zurich, Faculty of Science.
Boyko, A; Blevins, T; Yao, Y; Golubov, A; Bilichak, A; Ilnytskyy, Y; Hollander, J; Meins, F; Kovalchuk, I (2010). Transgenerational adaptation of Arabidopsis to stress requires DNA methylation and the function of Dicer-like proteins. PLoS ONE, 5(3):e9514.
Wicker, Thomas. Unravelling the mechanisms of genome evolution in plants. 2010, University of Zurich, Faculty of Science.
Matias-Hernandez, L; Battaglia, R; Galbiati, F; Rubes, M; Eichenberger, C; Grossniklaus, U; Kater, M M; Colombo, L (2010). VERDANDI is a direct target of the MADS domain ovule identity complex and affects embryo sac differentiation in Arabidopsis. The Plant Cell, 22(6):1702-1715.
Honegger, R (2010). Weltenbummlerin Kokosnuss. Briefe aus dem Botanischen Garten Zürich, 44(1):1-2.
Breen, J; Li, D; Dunn, D S; Békés, F; Xiuying, K; Zhang, J; Jia, J; Wicker, T; Mago, R; Ma, W; Bellgard, M; Appels, R (2010). Wheat beta-expansin (EXPB11) genes: Identification of the expressed gene on chromosome 3BS carrying a pollen allergen domain. BMC Plant Biology, 10:99.
Bhullar, N K; Zhang, Z; Wicker, T; Keller, B (2010). Wheat gene bank accessions as a source of new alleles of the powdery mildew resistance gene Pm3: a large scale allele mining project. BMC Plant Biology, 10:88.
Hadorn, Maik; Burla, Bo; Eggenberger Hotz, Peter (2009). Towards tailored communication networks in assemblies of artificial cells. In: 4th Australian Conference on Artificial Life (ACAL 2009), Melbourne, Australia, 1 December 2009 - 4 December 2009. Springer, 126-135.
Schu, D J; Carlier, A L; Jamison, K P; von Bodman, S; Stevens, A M (2009). Structure/Function Analysis of the Pantoea stewartii Quorum-Sensing Regulator EsaR as an Activator of Transcription. Journal of Bacteriology, 191(24):7402-7409.
Nekrasov, Vladimir; Li, Jing; Batoux, Martine; Roux, Milena; Chu, Zhao-Hui; Lacombe, Severine; Rougon, Alejandra; Bittel, Pascal; Kiss-Papp, Marta; Chinchilla, Delphine; van Esse, H Peter; Jorda, Lucia; Schwessinger, Benjamin; Nicaise, Valerie; Thomma, Bart P H J; Molina, Antonio; Jones, Jonathan D G; Zipfel, Cyril (2009). Control of the pattern-recognition receptor EFR by an ER protein complex in plant immunity. The EMBO Journal, 28(21):3428-3438.
Stettler, M; Eicke, S; Mettler, T; Messerli, G; Hörtensteiner, S; Zeeman, S C (2009). Blocking the Metabolism of Starch Breakdown Products in Arabidopsis Leaves Triggers Chloroplast Degradation. Molecular Plant, 2(6):1233-1246.
Jacobi, C A; Schiffner, F; Henkel, M; Waibel, M; Stork, B; Daubrawa, M; Eberl, L; Gregor, M; Wesselborg, S (2009). Effects of bacterial N-acyl homoserine lactones on human Jurkat T lymphocytes-OdDHL induces apoptosis via the mitochondrial pathway. International Journal of Medical Microbiology, 299(7):509-519.
Carlier, A; Burbank, L; von Bodman, S B (2009). Identification and characterization of three novel EsaI/EsaR quorum-sensing controlled stewartan exopolysaccharide biosynthetic genes in Pantoea stewartii ssp. stewartii. Molecular Microbiology, 74(4):903-913.
Li, Jing; Chu, Zhao-Hui; Batoux, Martine; Nekrasov, Vladimir; Roux, Milena; Chinchilla, Delphine; Zipfel, Cyril; Jones, Jonathan D G (2009). Specific ER quality control components required for biogenesis of the plant innate immune receptor EFR. Proceedings of the National Academy of Sciences of the United States of America, 106(37):15973-15978.
Schönmann, S; Loy, A; Wimmersberger, C; Sobek, J; Aquino, C; Vandamme, P; Frey, Beat; Rehrauer, H; Eberl, L (2009). 16S rRNA gene-based phylogenetic microarray for simultaneous identification of members of the genus Burkholderia. Environmental Microbiology, 11(4):779-800.
Zipfel, Cyril (2009). Early molecular events in PAMP-triggered immunity. Current Opinion in Plant Biology, 12(4):414-420.
Horath, T; Bachofen, R (2009). Molecular characterization of an endolithic microbial community in dolomite rock in the central alps (Switzerland). Microbial Ecology, 58(2):290-306.
Nicaise, Valerie; Roux, Milena; Zipfel, Cyril (2009). Recent Advances in PAMP-Triggered Immunity against Bacteria: Pattern Recognition Receptors Watch over and Raise the Alarm. Plant Physiology, 150(4):1638-1647.
Steindler, L; Bertani, I; De Sordi, L; Schwager, S; Eberl, L; Venturi, V (2009). LasI/R and RhlI/R quorum sensing in a strain of Pseudomonas aeruginosa beneficial to plants. Applied and Environmental Microbiology, 75(15):5131-5140.
Kim, Y Y; Choi, H; Segami, S; Cho, H T; Martinoia, E; Maeshima, M; Lee, Y (2009). AtHMA1 contributes to the detoxification of excess Zn(II) in Arabidopsis. The Plant Journal, 58(5):737-753.
Bhullar, N K; Street, K; Mackay, M; Yahiaoui, N; Keller, B (2009). Unlocking wheat genetic resources for the molecular identification of previously undescribed functional alleles at the Pm3 resistance locus. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 106(23):9519-9524.
Weisskopf, L; Akello, P; Milleret, R; Khan, Z R; Schulthess, F; Gobat, J M; Le Bayon, R C (2009). White lupin leads to increased maize yield through a soil fertility-independent mechanism: a new candidate for fighting Striga hermonthica infestation? Plant and Soil, 319(1-2):101-114.
Pessione, E; Pessione, A; Lamberti, C; Coïsson, D J; Riedel, K; Mazzoli, R; Bonetta, S; Eberl, L; Giunta, C (2009). First evidence of a membrane-bound, tyramine and beta-phenylethylamine producing, tyrosine decarboxylase in Enterococcus faecalis: a two-dimensional electrophoresis proteomic study. Proteomics, 9(10):2695-710.
Fernie, A R; Martinoia, E (2009). Malate. Jack of all trades or master of a few? Phytochemistry, 70(7):828-832.
Tomasi, N; Kretzschmar, T; Espen, L; Weisskopf, L; Fuglsang, A T; Palmgren, M G; Neumann, G; Varanini, Z; Pinton, R; Martinoia, E; Cesco, S (2009). Plasma membrane H-ATPase-dependent citrate exudation from cluster roots of phosphate-deficient white lupin. Plant, Cell and Environment, 32(5):465-475.
Clerc, J; Groll, M; Illich, D J; Bachmann, A S; Huber, R; Schellenberg, B; Dudler, R; Kaiser, M (2009). Synthetic and structural studies on syringolin A and B reveal critical determinants of selectivity and potency of proteasome inhibition. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 106(16):6507-6512.
Schelbert, S; Aubry, S; Burla, B; Agne, B; Kessler, F; Krupinska, K; Hörtensteiner, S (2009). Pheophytin pheophorbide hydrolase (pheophytinase) is involved in chlorophyll breakdown during leaf senescence in Arabidopsis. Plant Cell, 21(3):767-785.
Beyhl, D; Hörtensteiner, S; Martinoia, E; Farmer, E E; Fromm, J; Marten, I; Hedrich, R (2009). The fou2 mutation in the major vacuolar cation channel TPC1 confers tolerance to inhibitory luminal calcium. The Plant Journal, 58(5):715-723.
Juhas, M; van der Meer, J R; Gaillard, M; Harding, R M; Hood, D W; Crook, D W (2009). Genomic islands: tools of bacterial horizontal gene transfer and evolution. FEMS Microbiology Reviews, 33(2):376-393.
Müller, H; Westendorf, C; Leitner, E; Chernin, L; Riedel, K; Schmidt, S; Eberl, L; Berg, G (2009). Quorum-sensing effects in the antagonistic rhizosphere bacterium Serratia plymuthica HRO-C48. FEMS Microbiology Ecology, 67(3):468-478.
Hörtensteiner, S (2009). Stay-green regulates chlorophyll and chlorophyll-binding protein degradation during senescence. Trends in Plant Science, 14(3):155-162.
Malott, R J; O'Grady, E P; Toller, J; Inhülsen, S; Eberl, L; Sokol, P A (2009). A Burkholderia cenocepacia orphan LuxR homolog is involved in quorum-sensing regulation. Journal of Bacteriology, 191(8):2447-2460.
Posch, T; Franzoi, J; Prader, M; Salcher, M M (2009). New image analysis tool to study biomass and morphotypes of three major bacterioplankton groups in an alpine lake. Aquatic Microbial Ecology, 54(2):113-126.
Wicker, T; Krattinger, S G; Lagudah, E; Komatsuda, T; Pourkheirandish, M; Matsumoto, T; Cloutier, S; Reiser, L; Kanamori, H; Sato, K; Perovic, D; Stein, N; Keller, B (2009). Analysis of intraspecies diversity in wheat and barley genomes identifies breakpoints of ancient haplotypes and provides insight into the structure of diploid and hexaploid triticeae gene pools. Plant Physiology, 149(1):258-270.
Indermaur, Lukas; Gehring, Marianne; Wehrle, Wendelin; Tockner, Klement; Naef-Daenzer, Beat (2009). Behavior‐Based Scale Definitions for Determining Individual Space Use: Requirements of Two Amphibians. The American Naturalist, 173(1):60-71.
Endler, A; Reiland, S; Gerrits, B; Schmidt, U G; Baginsky, S; Martinoia, E (2009). In vivo phosphorylation sites of barley tonoplast proteins identified by a phosphoproteomic approach. Proteomics, 9(2):310-321.
Paterson, A H; Bowers, J E; Bruggmann, R; Dubchak, I; Grimwood, J; Gundlach, H; Haberer, G; Hellsten, U; Mitros, T; Poliakov, A; Schmutz, J; Spannagl, M; Tang, H; Wang, X; Wicker, T; Bharti, A K; Chapman, J; Feltus, F A; Gowik, Udo; Grigoriev, Igor V; Lyons, Eric; Maher, C A; Martis, M; Narechania, A; Otillar, R P; Penning, B W; Salamov, A A; Wang, Y; Zhang, L; Carpita, N C; Freeling, M; Gingle, A R; Hash, C T; Keller, B; Klein, P; Kresovich, S; McCann, M C; Ming, R; Peterson, D G; Mehboob-ur-Rahman, M; Ware, D; Westhoff, P; Mayer, K F X; Messing, J; Rokhsar, D S (2009). The Sorghum bicolor genome and the diversification of grasses. Nature, 457(7229):551-556.
Cheng, X; Zhang, D; Cheng, Z; Keller, B; Ling, H Q (2009). A new family of Ty1-copia-Like retrotransposons originated in the tomato Genome by a recent horizontal transfer event. Genetics, 181(4):1183-1193.
Tomescu, A M F; Rothwell, G W; Honegger, R (2009). A new genus and species of filamentous microfossil of cyanobacterial affinity from Early Silurian fluvial environments (lower Massanutten Sandstone, Virginia, USA). Botanical Journal of the Linnean Society, 160(3):284-289.
Krattinger, S G; Lagudah, E S; Spielmeyer, W; Singh, R P; Huerta-Espino, J; McFadden, H; Bossolini, E; Selter, L L; Keller, B (2009). A putative ABC transporter confers durable resistance to multiple fungal pathogens in wheat. Science, 323(5919):1360-1363.
Zeder, M; Peter, S; Shabarova, T; Pernthaler, J (2009). A small population of planktonic Flavobacteria with disproportionally high growth during the spring phytoplankton bloom in a prealpine lake. Environmental Microbiology, 11(10):2676-2686.
Wicker, T; Taudien, S; Houben, A; Keller, B; Graner, A; Platzer, M; Stein, N (2009). A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley. The Plant Journal, 59(5):712-722.
Titapiwatanakun, B; Blakeslee, J J; Bandyopadhyay, A; Yang, H; Mravec, J; Sauer, M; Cheng, Y; Adamec, J; Nagashima, A; Geisler, M; Sakai, T; Friml, J; Peer, W A; Murphy, A S (2009). ABCB19/PGP19 stabilises PIN1 in membrane microdomains in Arabidopsis. The Plant Journal, 57(1):27-44.
Piccini, C; Conde, D; Pernthaler, J; Sommaruga, R (2009). Alteration of chromophoric dissolved organic matter by solar UV radiation causes rapid changes in bacterial community composition. Photochemical & Photobiological Sciences, 8(9):1321-1328.
Badri, D V; Quintana, N; El Kassis, E G; Kim, H K; Choi, Y H; Sugiyama, A; Verpoorte, R; Martinoia, E; Manter, D K; Vivanco, J M (2009). An ABC transporter mutation alters root exudation of phytochemicals that provoke an overhaul of natural soil microbiota. Plant Physiology, 151:2006-2017.
Huang, L; Jones, A M E; Searle, I; Patel, K; Vogler, H; Hubner, N C; Baulcombe, D C (2009). An atypical RNA polymerase involved in RNA silencing shares small subunits with RNA polymerase II. Nature Structural and Molecular Biology, 16(1):91-93.
Pernthaler, J; Posch, T (2009). Aquatic microbial food webs. In: Likens, G E. Encyclopedia of Inland Waters ; vol. 3. Oxford: Elsevier, 244-251.
Ramel, C; Tobler, M; Meyer, Martin; Bigler, L; Ebert, M O; Schellenberg, B; Dudler, R (2009). Biosynthesis of the proteasome inhibitor syringolin A: the ureido group joining two amino acids originates from bicarbonate. BMC Biochemistry, 10:26.
Meier, S A. Characterisation of the SpoVG homologue in Staphylococcus aureus. 2009, University of Zurich, Faculty of Science.
Brunner, S. Cloning and functional analysis of alleles of the wheat powdery mildew resistance gene Pm3. 2009, University of Zurich, Faculty of Science.
Roney, B R; Renhui, L; Banack, S A; Murch, S; Honegger, R; Cox, P A (2009). Consumption of fa cai Nostoc soup: a potential for BMAA exposure from Nostoc cyanobacteria in China? Amyotrophic Lateral Sclerosis, 10(Suppl.):44-49.
Gryshkova, V S; Lituyev, D S; Filonenko, V V; Kiyamova, R G (2009). Creation of cellular models for the analysis of sodium-dependent phosphate transporter NaPi2b, a potential marker for ovarian cancer. Biopolymers and Cell = Biopolimery i Kletka, 25(2):95-100.
Kiang, L; Heichinger, C; Watt, S; Bähler, J; Nurse, P (2009). Cyclin-dependent kinase inhibits reinitiation of a normal S-phase program during G2 in fission yeast. Molecular and Cellular Biology, 29(15):4025-4032.
Grobei, M A; Qeli, E; Brunner, E; Rehrauer, H; Zhang, R; Roschitzki, B; Basler, K; Ahrens, C H; Grossniklaus, U (2009). Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function. Genome Research, 19(10):1786-1800.
Lituyev, D S (2009). Development and characterization of monoclonal antibodies against cytoplasmic N- terminus of human sodium-phosphate cotransporter NaPi2b. Kiew, Ukraine.
Zeder, Michael. Development of methods and technology for automated high-throughput multi-parameter analysis of single cells by fluorescence microscopy. 2009, University of Zurich, Faculty of Science.
Deng, Y; Boon, C; Eberl, L; Zhang, L H (2009). Differential modulation of Burkholderia cenocepacia virulence and energy metabolism by the quorum-sensing signal BDSF and its synthase. Journal of Bacteriology, 191(23):7270-8.
Boisson-Dernier, A; Roy, S; Kritsas, K; Grobei, M A; Jaciubek, M; Schroeder, J I; Grossniklaus, U (2009). Disruption of the pollen-expressed FERONIA homologs ANXUR1 and ANXUR2 triggers pollen tube discharge. Development, 136(19):3279-3288.
Shimizu, Kentaro K; Takeuchi, Yayoi (2009). Ecological genomics – a novel approach toward community ecology. In: Ohgushi, T; Kondo, M; Yoshida, T. New challenges in community ecology. Kyoto: Kyoto University Press, 223-241.
Alonso, C; Zeder, M; Piccini, C; Conde, D; Pernthaler, J (2009). Ecophysiological differences of betaproteobacterial populations in two hydrochemically distinct compartments of a subtropical lagoon. Environmental Microbiology, 11(4):867-876.
Wojas, S; Hennig, J; Plaza, S; Geisler, M; Siemianowski, O; Sklodowska, A; Ruszczynska, A; Bulska, E; Antosiewicz, D M (2009). Ectopic expression of Arabidopsis ABC transporter MRP7 modifies cadmium root-to-shoot transport and accumulation. Environmental Pollution, 157(10):2781 - 2789.
Schmid, M; Iversen, C; Gontia, I; Stephan, Roger; Hofmann, A; Hartmann, A; Jha, B; Eberl, L; Riedel, K; Lehner, Angelika (2009). Evidence for a plant associated natural habitat of Cronobacter spp. Research in Microbiology, 160(8):608-614.
Hanemann, A; Schweizer, G F; Cossu, R; Wicker, T; Röder, M S (2009). Fine mapping, physical mapping and development of diagnostic markers for the Rrs2 scald resistance gene in barley. Theoretical and Applied Genetics, 119(8):1507-1522.
Honegger, R (2009). Flechten: ökologische Aspekte der Wechselbeziehung zwischen Pilz und Alge. In: Bayerische Akademie der Wissenschaften. Ökologische Rolle der Flechten. München: Verlag Dr. Friedrich Pfeil, 25-41.
Schiestl, Florian P; Schlüter, Philipp M (2009). Floral isolation, specialized pollination, and pollinator behavior in orchids. Annual Review of Entomology, 54:425-446.
Hedhly, A; Hormaza, J I; Herrero, M (2009). Flower emasculation accelerates ovule degeneration and reduces fruit set in sweet cherry. Scientia Horticulturae, 119(4):455-457.
Peters, S; Keller, F (2009). Frost tolerance in excised leaves of the common bugle (Ajuga reptans L.) correlates positively with the concentrations of raffinose family oligosaccharides (RFOs). Plant, Cell and Environment, 32(8):1099-1107.
Chen, X; Steed, A; Travella, S; Keller, B; Nicholson, P (2009). Fusarium graminearum exploits ethylene signalling to colonize dicotyledonous and monocotyledonous plants. The New Phytologist, 182(4):975-983.
Wicker, T; Buell, C R (2009). Gene and repetitive sequence annotation in the Triticeae. In: Feuillet, C; Muehlbauer, G J. Genetics and Genomics of the Triticeae. New York, US: Springer, 407-426.
Mayer, K F X; Taudien, S; Martis, M; Simková, H; Suchánková, P; Gundlach, H; Wicker, T; Petzold, A; Felder, M; Steuernagel, B; Scholz, Uwe; Graner, A; Platzer, M; Dolezel, J; Stein, N (2009). Gene content and virtual gene order of barley chromosome 1H. Plant Physiology, 151(2):496-505.
Lagudah, E S; Krattinger, S G; Herrera-Foessel, S; Singh, R P; Huerta-Espino, J; Spielmeyer, W; Brown-Guedira, G; Selter, L L; Keller, B (2009). Gene-specific markers for the wheat gene Lr34/Yr18/Pm38 which confers resistance to multiple fungal pathogens. Theoretical and Applied Genetics, 119(5):889-898.
Schlüter, P M; Ruas, P M; Kohl, G; Ruas, C F; Stuessy, T F; Paulus, H F (2009). Genetic patterns and pollination in Ophrys iricolor and O. mesaritica (Orchidaceae): sympatric evolution by pollinator shift. Botanical Journal of the Linnean Society, 159(4):583-598.
Halaschek-Wiener, J; Amirabbasi-Beik, M; Monfared, N; Pieczyk, M; Sailer, C; Kollar, A; Thomas, R; Agalaridis, G; Yamada, S; Oliveira, L; Collins, J A; Meneilly, G; Marra, M A; Madden, K M; Le, N D; Connors, J M; Brooks-Wilson, A R (2009). Genetic variation in healthy oldest-old. PLoS ONE, 4(8):e6641.
Hedhly, A; Hormaza, J I; Herrero, M (2009). Global warming and sexual plant reproduction. Trends in Plant Science, 14(1):30-36.
Sudre, Damien. Identification of membrane proteins involved in heavy metal detoxification and transport in Arabidopsis thaliana. 2009, University of Zurich, Faculty of Science.
Uehlinger, S; Schwager, S; Bernier, S P; Riedel, K; Nguyen, D T; Sokol, P A; Eberl, L (2009). Identification of specific and universal virulence factors in Burkholderia cenocepacia strains by using multiple infection hosts. Infection and Immunity, 77(9):4102-4110.
Yahiaoui, N; Kaur, N; Keller, B (2009). Independent evolution of functional Pm3 resistance genes in wild tetraploid wheat and domesticated bread wheat. The Plant Journal, 57(5):846-856.
Raschle, T; Speziga, D; Kress, W; Moccand, C; Gehrig, P; Amrhein, N; Weber-Ban, E; Fitzpatrick, T B (2009). Intersubunit cross-talk in pyridoxal 5'-phosphate synthase, coordinated by the C terminus of the synthase subunit. Journal of Biological Chemistry, 284(12):7706-7718.
Schauer, S E; Schlüter, P M; Baskar, R; Gheyselinck, J; Bolaños, A; Curtis, M D; Grossniklaus, U (2009). Intronic regulatory elements determine the divergent expression patterns of AGAMOUS-LIKE6 subfamily members in Arabidopsis. The Plant Journal, 59(6):987-1000.
Shabarova, T; Pernthaler, J (2009). Investigation of bacterioplankton communities in aquatic karst pools in Bärenschacht cave of Bernese Oberland. In: White, W B. Proceedings of the 15th International Congress of Speleology, Kerrville, Texas, July 19-26, 2009. Huntsville, AL: National Speleological Society, 416-421.
Seeholzer, Sabine. Isolation and characterisation of new R-protein variants encoded at the barley Mla locus that specify resistance against the fungus powdery mildew. 2009, University of Zurich, Faculty of Science.
Inatsugi, Rie; Kawai, Hiromitsu; Yamaoka, Yasuyo; Yu, Yanbo; Sekiguchi, Akira; Nakamura, Masanobu; Nishida, Ikuo (2009). Isozyme-specific modes of activation of CTP:phosphorylcholine cytidylyltransferase in Arabidopsis thaliana at low temperature. Plant & Cell Physiology, 50(10):1727-1735.
Honegger, R (2009). Lichen-forming fungi and their photobionts. In: Deising, H. Plant relationships, 2nd ed. Berlin: Springer, 305-333.
Kirsch, M. Low temperature induces raffinose family oligosaccharide and maltose accumulation in plants. 2009, University of Zurich, Faculty of Science.
Tiwari, V K; Rawat, N; Chhuneja, P; Neelam, K; Aggarwal, R; Randhawa, G S; Dhaliwal, H S; Keller, B; Singh, K (2009). Mapping of quantitative trait Loci for grain iron and zinc concentration in diploid A genome wheat. Journal of Heredity, 100(6):771-776.
Krattinger, S G. Molecular characterization of the durable broad-spectrum disease resistance gene Lr34 in wheat (Triticum aestivum L.). 2009, University of Zurich, Faculty of Science.
Zeder, M; Pernthaler, J (2009). Multi-spot live-image autofocusing for high-throughput microscopy of fluorescently stained bacteria. Cytometry Part A, 75(9):781-788.
Shim, D; Hwang, J U; Lee, J; Lee, S; Choi, Y; An, G; Martinoia, E; Lee, Y (2009). Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice. Plant Cell, 21(12):4031-4043.
Honegger, R (2009). Pflanzliches Elfenbein bei Dattel, Taguanuss & Co. Zürich: Botanischer Garten.
Grossniklaus, U (2009). Plant science: Paternal patterning cue. Science, 323(5920):1439-1440.
Kretzschmar, Tobias. Pleiotropic drug resistance type ABC transporters in Petunia hybrida: novel roles in symbiotic interactions, branch development and herbivory defense. 2009, University of Zurich, Faculty of Science.
Shimizu, Kentaro K (2009). Pollen tubes and hairs. In: Ishii, R. Plant Encyclopedia. Tokyo, Japan: s.n., 207-208.
Schmidt, S; Blom, J F; Pernthaler, J; Berg, G; Baldwin, A; Mahenthiralingam, E; Eberl, L (2009). Production of the antifungal compound pyrrolnitrin is quorum sensing-regulated in members of the Burkholderia cepacia complex. Environmental Microbiology, 11(6):1422-1437.
Carranza, P; Hartmann, I; Lehner, A; Stephan, Roger; Gehrig, P; Grossmann, J; Barkow-Oesterreicher, S; Roschitzki, B; Eberl, L; Riedel, K (2009). Proteomic profiling of Cronobacter turicensis 3032, a food-borne opportunistic pathogen. Proteomics, 9(13):3564-3579.
Schneider, T; Schellenberg, M; Meyer, S; Keller, F; Gehrig, P; Riedel, K; Lee, Y; Eberl, L; Martinoia, E (2009). Quantitative detection of changes in the leaf-mesophyll tonoplast proteome in dependency of a cadmium exposure of barley (Hordeum vulgare L.) plants. Proteomics, 9(10):2668-77.
Schneider, T; Keller, F (2009). Raffinose in chloroplasts is synthesized in the cytosol and transported across the chloroplast envelope. Plant & Cell Physiology, 50(12):2174-2182.
Henrichs, Sina. Regulation of auxin transport by modulatory drugs and protein phosphorylation. 2009, University of Zurich, Faculty of Science.
Stökl, J; Schlüter, P M; Stuessy, T F; Paulus, H F; Fraberger, R; Erdmann, D; Schulz, C; Francke, W; Assum, G; Ayasse, M (2009). Speciation in sexually deceptive orchids: pollinator-driven selection maintains discrete odour phenotypes in hybridizing species. Biological Journal of the Linnean Society, 98(2):439-451.
Buck, U; Grossart, H P; Amann, R; Pernthaler, J (2009). Substrate incorporation patterns of bacterioplankton populations in stratified and mixed waters of a humic lake. Environmental Microbiology, 11(7):1854-1865.
Clerc, J; Florea, B I; Krauss, M; Groll, M; Huber, R; Bachmann, A S; Dudler, R; Driessen, C; Overkleeft, H S; Kaiser, M (2009). Syringolin A Selectively Labels the 20S Proteasome in Murine EL4 and Wild-Type and Bortezomib-Adapted Leukaemic Cell Lines. ChemBioChem, 10(16):2638-2643.
Nagy, R; Grob, H; Weder, B; Green, P; Klein, M; Frelet-Barrand, A; Schjoerring, J K; Brearley, C; Martinoia, E (2009). The Arabidopsis ATP-binding cassette protein AtMRP5/AtABCC5 is a high affinity inositol hexakisphosphate transporter involved in guard cell signaling and phytate storage. Journal of Biological Chemistry, 284(48):33614-33622.
Shimizu-Inatsugi, Rie; Lihova, Judita; Iwanaga, Hiroko; Kudoh, Hiroshi; Savolainen, Outi; Watanabe, Kuniaki; Yakubov, Valentin V; Shimizu, Kentaro K (2009). The allopolyploid Arabidopsis kamchatica originated from multiple individuals of Arabidopsis lyrata and Arabidopsis halleri. Molecular Ecology, 18(19):4024-4048.
Loutre, C; Wicker, T; Travella, S; Galli, P; Scofield, S; Fahima, T; Feuillet, C; Keller, B (2009). Two different CC-NBS-LRR genes are required for Lr10-mediated leaf rust resistance in tetraploid and hexaploid wheat. The Plant Journal, 60(6):1043-1054.
Uelinger, S A. Virulence factors and pathogenicity models of Burkholderia species. 2009, University of Zurich, Faculty of Science.
Moll, C; von Lyncker, L; Zimmermann, S; Kägi, C; Baumann, N; Twell, D; Grossniklaus, U; Gross-Hardt, R (2008). CLO/GFA1 and ATO are novel regulators of gametic cell fate in plants. The Plant Journal, 56(6):913-921.
Bansal, U K; Bossolini, E; Miah, H; Keller, B; Park, R F; Bariana, H S (2008). Genetic mapping of seedling and adult plant stem rust resistance in two European winter wheat cultivars. Euphytica, 164(3):821-828.
Bohn, Yu-Sing Tammy; Brandes, G; Rakhimova, E; Horatzek, S; Salunkhe, P; Munder, A; van Barneveld, A; Jordan, D; Bredenbruch, F; Häußler, S; Riedel, K; Eberl, L; Jensen, P O; Bjarnsholt, T; Moser, C; Hoiby, N; Tümmler, B; Wiehlmann, L (2008). Multiple roles of Pseudomonas aeruginosa TBCF10839 PilY1 in motility, transport and infection. Molecular Microbiology, 71(3):730-747.
Sousa, S A; Ramos, C G; Almeida, F; Meirinhos-Soares, L; Wopperer, J; Schwager, S; Eberl, L; Leitão, J H (2008). Burkholderia cenocepacia J2315 acyl carrier protein: a potential target for antimicrobials' development? Microbial Pathogenesis, 45(5-6):331-336.
Santelia, D; Henrichs, S; Vincenzetti, V; Sauer, M; Bigler, L; Klein, M; Bailly, A; Lee, Y; Friml, J; Geisler, M; Martinoia, E (2008). Flavonoids redirect PIN-mediated polar auxin fluxes during root gravitropic responses. Journal of Biological Chemistry, 283(45):31218-31226.
Fazi, S; Amalfitano, S; Piccini, C; Zoppini, A; Puddu, A; Pernthaler, J (2008). Colonization of overlaying water by bacteria from dry river sediments. Environmental Microbiology, 10(10):2760-2772.
Christiansen, G; Yoshida, W Y; Blom, J F; Portmann, C; Gademann, K; Hemscheidt, T; Kurmayer, R (2008). Isolation and structure determination of two microcystins and sequence comparison of the McyABC aenylation domains in Planktothrix species. Journal of Natural Products, 71(11):1881-1886.
Wicker, T; Narechania, A; Sabot, F; Stein, J; Vu, G T H; Graner, A; Ware, D; Stein, N (2008). Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats. BMC Genomics, 9:518.
Shimizu, Kentaro K; Ito, Toshiro; Ishiguro, Sumie; Okada, Kiyotaka (2008). MAA3 (MAGATAMA3) helicase gene is required for female gametophyte development and pollen tube guidance in Arabidopsis thaliana. Plant & Cell Physiology, 49(10):1478-1483.
Lee, M; Choi, Y; Burla, B; Kim, Y Y; Jeon, B; Maeshima, M; Yoo, J Y; Martinoia, E; Lee, Y (2008). The ABC transporter AtABCB14 is a malate importer and modulates stomatal response to CO2. Nature Cell Biology, 10(10):1217-1223.
Ougham, H; Hörtensteiner, S; Armstead, I; Donnison, I; King, I; Thomas, H; Mur, L (2008). The control of chlorophyll catabolism and the status of yellowing as a biomarker of leaf senescence. Plant Biology, 10(S1):4-14.
Krügel, U; Veenhoff, L M; Langbein, J; Wiederhold, E; Liesche, J; Friedrich, T; Grimm, B; Martinoia, E; Poolman, B; Kühn, C (2008). Transport and sorting of the solanum tuberosum sucrose transporter SUT1 is affected by posttranslational modification. Plant Cell, 20(9):2497-2513.
García-Aljaro, C; Eberl, L; Riedel, K; Blanch, A R (2008). Detection of quorum-sensing-related molecules in Vibrio scophthalmi. BMC Microbiology, 8:138.
Bailly, A; Sovero, V; Vincenzetti, V; Santelia, D; Bartnik, D; Koenig, B W; Mancuso, S; Martinoia, E; Geisler, M (2008). Modulation of P-glycoproteins by auxin transport inhibitors is mediated by interaction with immunophilins. Journal of Biological Chemistry, 283(31):21817-21826.
Schwessinger, Benjamin; Zipfel, Cyril (2008). News from the frontline: recent insights into PAMP-triggered immunity in plants. Current Opinion in Plant Biology, 11(4):389-395.
Rehrauer, H; Schönmann, S; Eberl, L; Schlapbach, R (2008). PhyloDetect: a likelihood-based strategy for detecting microorganisms with diagnostic microarrays. Bioinformatics, 24(16):i83-i89.
Salcher, M M; Pernthaler, J; Zeder, M; Psenner, R; Posch, T (2008). Spatio-temporal niche separation of planktonic Betaproteobacteria in an oligo-mesotrophic lake. Environmental Microbiology, 10(8):2074-2086.
Lygeros, J; Koutroumpas, K; Dimopoulos, S; Legouras, I; Kouretas, P; Heichinger, C; Nurse, P; Lygerou, Z (2008). Stochastic hybrid modeling of DNA replication across a complete genome. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 105(34):12295-12300.
Tomasi, N; Weisskopf, L; Renella, G; Landi, L; Pinton, R; Varanini, Z; Nannipieri, P; Torrent, J; Martinoia, E; Cesco, S (2008). Flavonoids of white lupin roots participate in phosphorus mobilization from soil. Soil Biology and Biochemistry, 40(7):1971-1974.
Wang, Guodong; Ellendorff, Ursula; Kemp, Ben; Mansfield, John W; Forsyth, Alec; Mitchell, Kathy; Bastas, Kubilay; Liu, Chun-Ming; Woods-Tör, Alison; Zipfel, Cyril; de Wit, Pierre J G M; Jones, Jonathan D G; Tör, Mahmut; Thomma, Bart P H J (2008). A Genome-Wide Functional Investigation into the Roles of Receptor-Like Proteins in Arabidopsis. Plant Physiology, 147(2):503-517.
Jasinski, M; Sudre, D; Schansker, G; Schellenberg, M; Constant, S; Martinoia, E; Bovet, L (2008). AtOSA1, a member of the Abc1-like family, as a new factor in cadmium and oxidative stress response. Plant Physiology, 147(2):719-731.
Müller, B; Sheen, J (2008). Cytokinin and auxin interaction in root stem-cell specification during early embryogenesis. Nature, 453(7198):1094-1097.
Aubry, S; Mani, J; Hörtensteiner, S (2008). Stay-green protein, defective in Mendel's green cotyledon mutant, acts independent and upstream of pheophorbide a oxygenase in the chlorophyll catabolic pathway. Plant Molecular Biology, 67(3):243-256.
Guggisberg, A; Baroux, C; Grossniklaus, U; Conti, E (2008). Genomic origin and organization of the allopolyploid Primula egaliksensis investigated by in situ hybridization. Annals of Botany, 101(7):919-927.
Allers, E; Niesner, C; Wild, C; Pernthaler, J (2008). Microbes enriched in seawater after addition of coral mucus. Applied and Environmental Microbiology, 74(10):3274-3278.
Schlüter, P M; Schiestl, F P (2008). Molecular mechanisms of floral mimicry in orchids. Trends in Plant Science, 13(5):228-235.
Hörtensteiner, Stefan; Müller, Thomas; Kräutler, Bernhard (2008). The mechanism of chlorophyll degradation in plants. CHIMIA International Journal for Chemistry, 62(5):440.
Groll, M; Schellenberg, B; Bachmann, A S; Archer, C R; Huber, R; Powell, T K; Lindow, S; Kaiser, M; Dudler, R (2008). A plant pathogen virulence factor inhibits the eukaryotic proteasome by a novel mechanism. Nature, 452(7188):755-758.
Fujimoto, Ryo; Kinoshita, Yuki; Kawabe, Akira; Kinoshita, Tetsu; Takashima, Kazuya; Nordborg, Magnus; Nasrallah, Mikhail E; Shimizu, Kentaro K; Kudoh, Hiroshi; Kakutani, Tetsuji (2008). Evolution and control of imprinted FWA genes in the genus Arabidopsis. PLoS Genetics, 4(4)::e1000048..
Connor, E C; Rott, A S; Zeder, M; Jüttner, F; Dorn, S (2008). 13C-labelling patterns of green leaf volatiles indicating different dynamics of precursors in Brassica leaves. Phytochemistry, 69(6):1304-1312.
Ruas, C F; Weiss-Schneeweiss, H; Stuessy, T F; Samuel, M R; Pedrosa-Harand, A; Tremetsberger, K; Ruas, P M; Schlüter, P M; Ortiz Herrera, M A; König, C; Matzenbacher, N I (2008). Characterization, genomic organization and chromosomal distribution of Ty1-copia retrotransposons in species of Hypochaeris (Asteraceae). Gene, 412(1-2):39-49.
Frelet-Barrand, A; Kolukisaoglu, H U; Plaza, S; Rüffer, M; Azevedo, L; Hörtensteiner, S; Marinova, K; Weder, B; Schulz, B; Klein, M (2008). Comparative mutant analysis of Arabidopsis ABCC-type ABC transporters: AtMRP2 contributes to detoxification, vacuolar organic anion transport and chlorophyll degradation. Plant & Cell Physiology, 49(4):557-569.
Stökl, J; Schlüter, P M; Stuessy, T F; Paulus, H F; Assum, G; Ayasse, M (2008). Scent variation and hybridization cause the displacement of a sexually deceptive orchid species. American Journal of Botany, 95(4):472-481.
Mäder, Claudia; Shimizu, Kentaro K. Exoten unter den Uni-Professoren. In: Der Landbote, 25 March 2008, 25.
Zipfel, Cyril; Rathjen, John P (2008). Plant Immunity: AvrPto Targets the Frontline. Current Biology, 18(5):R218-R220.
Pien, S; Fleury, D; Mylne, J S; Crevillen, P; Inzé, D; Avramova, Z; Dean, C; Grossniklaus, U (2008). ARABIDOPSIS TRITHORAX1 dynamically regulates FLOWERING LOCUS C activation via histone 3 lysine 4 trimethylation. Plant Cell, 20(3):580-588.
Chhuneja, P; Kaur, S; Garg, T; Ghai, M; Kaur, S; Prashar, M; Bains, N S; Goel, R K; Keller, B; Dhaliwal, H S; Singh, K (2008). Mapping of adult plant stripe rust resistance genes in diploid A genome wheat species and their transfer to bread wheat. Theoretical and Applied Genetics, 116(3):313-324.
Zipfel, Cyril (2008). Pattern-recognition receptors in plant innate immunity. Current Opinion in Immunology, 20(1):10-16.
Nawy, T; Lukowitz, W; Bayer, M (2008). Talk global, act local-patterning the Arabidopsis embryo. Current Opinion in Plant Biology, 11(1):28-33.
Grimm, M; Stephan, Roger; Iversen, C; Manzardo, G; Rattei, T; Riedel, K; Ruepp, A; Frishman, D; Lehner, Angelika (2008). Cellulose as an extra-cellular matrix component present in Enterobacter sakazakii biofilms. Journal of Food Protection, 71(1):13-18.
Boyko, A; Kovalchuk, I (2008). Epigenetic control of plant stress response. Environmental and Molecular Mutagenesis, 49(1):61-72.
Shimizu, Kentaro K; Shimizu-Inatsugi, Rie; Tsuchimatsu, Takashi; Purugganan, Michael D (2008). Independent origins of self-compatibility in Arabidopsis thaliana. Molecular Ecology, 17(2):704-714.
Boisson-Dernier, A; Frietsch, S; Kim, T H; Dizon, M B; Schroeder, J I (2008). The peroxin loss-of-function mutation abstinence by mutual consent disrupts male-female gametophyte recognition. Current Biology, 18(1):63-68.
Johnston, A J; Matveeva, E; Kirioukhova, O; Grossniklaus, U; Gruissem, W (2008). A dynamic reciprocal RBR-PRC2 regulatory circuit controls Arabidopsis gametophyte development. Current Biology, 18(21):1680-1686.
Kaur, N. Allele mining and sequence diversity at the wheat powdery mildew resistance locus Pm3. 2008, University of Zurich, Faculty of Science.
Badri, D V; Loyola-Vargas, V M; Broeckling, C D; De-la-Peña, C; Jasinski, M; Santelia, D; Martinoia, E; Sumner, L W; Banta, L M; Stermitz, F; Vivanco, J M (2008). Altered profile of secondary metabolites in the root exudates of Arabidopsis ATP-binding cassette transporter mutants. Plant Physiology, 146(2):762-771.
Aubry, Sylvain. Biochemical and molecular analysis of chlorophyll degradation in higher plants. 2008, University of Zurich, Faculty of Science.
Schmidt, S. Biological control activity and quorum sensing in Burkholderia sp. 2008, University of Zurich, Faculty of Science.
Bailly, A. Cellular auxin transport and its regulation in Arabidopsis. 2008, University of Zurich, Faculty of Science.
Vlamakis, H; Aguilar, C; Losick, R; Kolter, R (2008). Control of cell fate by the formation of an architecturally complex bacterial community. Genes and Development, 22(7):945-953.
Stojałowski, S; Kociuba, M; Stochmal, B; Kondzioła, M; Jaciubek, M (2008). Determining the plasmotypic structure of rye populations by SCAR markers. Journal of Applied Genetics, 49(3):229-232.
Tomescu, A M F; Honegger, R; Rothwell, G W (2008). Earliest fossil record of bacterial-cyanobacterial mat consortia: the early Silurian Passage Creek biota (440 Ma, Virginia, USA). Geobiology, 6(2):120-124.
Schnell Ramos, M. Exploring the role of the plant vacuole: the transporter associated with antigenic processing (TAP) transporter. 2008, University of Zurich, Faculty of Science.
Honegger, R; Aptroot, A (2008). Flechten im Botanischen Garten Zürich : 2008: 175 Jahre Universität Zürich : unser Beitrag zum Thema Wissen teilen. Zürich, CH: Vereinigung Freunde des Botanischen Gartens Zürich.
Baerenfaller, K; Grossmann, J; Grobei, M A; Hull, R; Hirsch-Hoffmann, M; Yalovsky, S; Zimmermann, P; Grossniklaus, U; Gruissem, W; Baginsky, S (2008). Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics. Science, 320(5878):938-941.
Schellenberg, B. Identification and characterisation of a novel class of proteasome inhibitors. 2008, University of Zurich, Faculty of Science.
Endler, A. Identification and characterisation of tonoplast transport systems using proteomic approaches. 2008, University of Zurich, Faculty of Science.
Seidl, K. Impact of the catabolite control protein CcpA in "Staphylococcus aureus". 2008, University of Zurich, Faculty of Science.
Hübscher, J. Investigations on factors modulating methicillin resistance in staphylococcus aureus. 2008, University of Zurich, Faculty of Science.
Shimizu, Kentaro K (2008). Letter from laboratories in foreign countries 9. International research environment grown in Switzerland: Institute of Plant Biology, University of Zurich. News / Japan Society of Evolutionary Studies, 9:10-16.
Park, J; Kim, Y Y; Martinoia, E; Lee, Y (2008). Long-distance transporters of inorganic nutrients in plants. Journal of Plant Biology, 51(4):240-247.
Steiner, Miriam. Metal ion binding to group II intron ribozymes: a study from bulk to the single molecule level. 2008, University of Zurich, Faculty of Science.
Ender, M. Molecular and functional charactersiation of the Swiss drug clone, a Methicillin-resistenter Staphylococcus aureus. 2008, University of Zurich, Faculty of Science.
Kaur, N; Street, K; Mackay, M; Yahiaoui, N; Keller, B (2008). Molecular approaches for characterization and use of natural disease resistance in wheat. European Journal of Plant Pathology, 121(3):387-397.
Honegger, R (2008). Morphogenesis. In: Nash, T H. Lichen biology (2nd ed.). Cambridge, UK: Cambridge University Press, 69-93.
Honegger, R (2008). Mycobionts. In: Nash, T H. Lichen biology (2nd ed.). Cambridge, UK: Cambridge University Press, 27-39.
Verrier, P J; Bird, D; Burla, B; Dassa, E; Forestier, C; Geisler, M; Klein, M; Kolukisaoglu, U; Lee, Y; Martinoia, E; Murphy, A; Rea, P A; Samuels, L; Schulz, B; Spalding, E J; Yazaki, K; Theodoulou, F L (2008). Plant ABC proteins - a unified nomenclature and updated inventory. Trends in Plant Science, 13(4):151-159.
Wopperer, J. Quorum sensing and virulence in members of the genus Burkholderia. 2008, University of Zurich, Faculty of Science.
Leiber, R M. ROL5: a potential regulator of ROS in Arabidopsis thaliana. 2008, University of Zurich, Faculty of Science.
Salcher, Michaela Maria. Seasonality of bacterial phylotypes affected by bottom-up and top-down control in Piburger See, Austria. 2008, University of Zurich, Faculty of Science.
Honegger, R; Scherrer, S (2008). Sexual reproduction in lichen-forming ascomycetes. In: Nash, T H. Lichen biology (2nd ed.). Cambridge, UK: Cambridge University Press, 94-103.
Weisskopf, L; Le Bayon, R C; Kohler, F; Page, V; Jossi, M; Gobat, J M; Martinoia, E; Aragno, M (2008). Spatio-temporal dynamics of bacterial communities associated with two plant species differing in organic acid secretion: A one-year microcosm study on lupin and wheat. Soil Biology and Biochemistry, 40(7):1772-1780.
Tiaden, A; Spirig, T; Carranza, P; Brüggemann, H; Riedel, K; Eberl, L; Buchrieser, C; Hilbi, H (2008). Synergistic contribution of the Legionella pneumophila lqs genes to pathogen-host interactions. Journal of Bacteriology, 190(22):7532-7547.
Schellenberg, B; Ramel, C; Dudler, R (2008). Syringolin A: action on plants, regulation of biosynthesis, and phylogenetic occurrence of structurally related compounds. In: Fatmi, M; Collmer, A; Iacobellis, N S; Mansfield, J W; Murillo, J; Schaad, N W; Ullrich, M. Pseudomonas syringae pathovars and related pathogens - identification, epidemiology and genomics. Dordrecht, NL: Springer, 249-257.
Bemer, M; Wolters-Arts, M; Grossniklaus, U; Angenent, G C (2008). The MADS domain protein DIANA acts together with AGAMOUS-LIKE80 to specify the central cell in Arabidopsis ovules. Plant Cell, 20(8):2088-2101.
Evans, M M S; Grossniklaus, U (2008). The Maize megagametophyte. In: Bennetzen, J; Hake, S. Handbook of Maize: Its Biology. New York, N.Y., US: Springer, 79-104.
Schönmann, S. The genus Burkholderia: characterization of antifungal actions and development of a taxonomic microarray. 2008, University of Zurich, Faculty of Science.
Baroux, C; Autran, D; Gillmor, C S; Grimanelli, D; Grossniklaus, U (2008). The maternal to zygotic transition in animals and plants. Cold Spring Harbor Symposia on Quantitative Biology, 73:89-100.
Ringli, C; Bigler, L; Kuhn, B M; Leiber, R M; Diet, A; Santelia, D; Frey, Beat; Pollmann, S; Klein, M (2008). The modified Flavonol glycosylation profile in the Arabidopsis rol1 mutants results in alterations in plant growth and cell shape formation. Plant Cell, 20(6):1470-1481.
Escobar-Restrepo, J-M; Huck, N; Kessler, S; Gagliardini, V; Gheyselinck, J; Yang, W-C; Grossniklaus, U (2007). The FERONIA Receptor-like Kinase Mediates Male-Female Interactions During Pollen Tube Reception. Science, 317(5838):656-660.
Chinchilla, Delphine; Zipfel, Cyril; Robatzek, Silke; Kemmerling, Birgit; Nürnberger, Thorsten; Jones, Jonathan D G; Felix, Georg; Boller, Thomas (2007). A flagellin-induced complex of the receptor FLS2 and BAK1 initiates plant defence. Nature, 448(7152):497-500.
Shimizu, Kentaro K (2007). Ecologist@world, No. 8. From postdoc in the USA to the lab start up in Switzerland. Japanese Journal of Ecology, 57(3):432-437.
Plant Evolution. Edited by: Shimizu, Kentaro K; Mitsuyasu, Hasebe (2007). Tokyo: Shujunsha.
Higashiyama, Tetsui; Inatsugi, Rie; Sakamoto, Sachio; Sasaki, Narie; Mori, Toshiyuki; Kuroiwa, Haruko; Nakada, Takashi; Nozaki, Hisayoshi; Kuroiwa, Tsuneyoshi; Nakano, Akihiko (2006). Species preferentiality of the pollen tube attractant derived from the synergid cell of Torenia fournieri. Plant physiology, 142:481-491.
Molinier, Jean; Ries, Gerhard; Zipfel, Cyril; Hohn, Barbara (2006). Transgeneration memory of stress in plants. Nature, 442(7106):1046-1049.
Lihova, Judita; Shimizu, Kentaro K; Marhold, Karol (2006). Allopolyploid origin of Cardamine asarifolia (Brassicaceae): incongruence between plastid and nuclear ribosomal DNA sequences solved by a single-copy nuclear gene. Molecular Phylogenetics and Evolution, 39(3):759-786.
Zipfel, Cyril; Kunze, Gernot; Chinchilla, Delphine; Caniard, Anne; Jones, Jonathan D G; Boller, Thomas; Felix, Georg (2006). Perception of the Bacterial PAMP EF-Tu by the Receptor EFR Restricts Agrobacterium-Mediated Transformation. Cell, 125(4):749-760.
Shimizu, Kentaro K (2006). Evolutionary genomics (evolutionary and ecological functional genomics): The power of Arabidopsis thaliana to study adaptive evolution. Japanese Journal of Ecology, 56:28-46.
Wicker, T; Schlagenhauf, E; Graner, A; Close, T J; Keller, B; Stein, N (2006). 454 sequencing put to the test using the complex genome of barley. BMC Genomics, 7:275.
Inatsugi, Rie; Sasaki, Narie; Kotake, Toshihisa; Tsumuraya, Yoichi; Kuroiwa, Tsuneyoshi; Nakano, Akihiko; Higashiyama, Tetsuya (2006). AMOR, a 70-kDa protein from the ovule, induces competence of the pollen tube to respond to the final-step guidance. Journal of Plant Research, 119:169-170.
Shimizu, Kentaro K; Purugganan, Michael D (2006). Arabidopsis as a model organism in evolutionary genetics. In: Fox, Charles W; Wolf, Jason B. Evolutionary Genetics: Concepts And Case Studies. New York: Oxford Univ Press, 453-455.
Higashiyama, Tetsuya; Inatsugi, Rie (2006). Comparative analysis of biological models used in the Study of Pollen Tube Growth. In: Malho, Rui. The Pollen Tube. Berlin, Heidelberg: Springer, 265-286.
Inatsugi, Rie; Higashiyama, Tetsuya; Ueda, Takashi (2006). Instruction for optical microscopes. In: Fukuda, Hiroo; Nishimura, Mikio; Nakano, Akihiko. New Edition: protocols to observe plant cells. Tokyo: Shujunsha, 31-34.
Inatsugi, Rie; Higashiyama, Tetsuya; Ueda, Takashi (2006). Overview of microscopes: history of the technological advance and the usage of diverse microscopes. In: Fukuda, Hiroo; Nishimura, Mikio; Nakano, Akihiko. New Edition: protocols to observe plant cells. Tokyo: Shujunsha, 26-30.
Zipfel, Cyril; Felix, Georg (2005). Plants and animals: a different taste for microbes? Current Opinion in Plant Biology, 8(4):353-360.
Shimizu, Kentaro K (2005). Evolutionary genomics confirmed Darwin's selfing model: An adaptation revealed by DNA analysis. Protein, Nucleic Acid and Enzyme, 50(8):966-977.
Shimizu, Kentaro K; Purugganan, Michael D (2005). Evolutionary and ecological genomics of Arabidopsis. Plant Physiology, 138(2):578-584.
Shimizu, Kentaro K; Okada, Kiyotaka; Kudoh, Hiroshi; Purugganan, Michael D (2005). Arabidopsis and related species as models to study speciation. Genes & Genetic Systems, 80(6):442.
Shimizu, Kentaro K; Fuji, Shinji; Marhold, Karol; Watanabe, Kuniaki; Kudoh, Hiroshi (2005). Arabidopsis kamchatica (Fisch. ex DC.) К. Shimizu & Kudoh and A. kamchatica subsp. kawasakiana (Makino) K. Shimizu & Kudoh, New Combinations. Acta Phytotaxonomica et Geobotanica, 56(2):163-172.
Shimizu, Kentaro K; Purugganan, Michael D (2005). Evolutionary genomics supported Darwin's hypothesis about the evolution of selfing. Genes & Genetic Systems, 80(6):431.
Kunze, Gernot; Zipfel, Cyril; Robatzek, Silke; Niehaus, Karsten; Boller, Thomas; Felix, Georg (2004). The N Terminus of Bacterial Elongation Factor Tu Elicits Innate Immunity in Arabidopsis Plants. Plant Cell, 16(12):3496-3507.
Navarro, Lionel; Zipfel, Cyril; Rowland, Owen; Keller, Ingo; Robatzek, Silke; Boller, Thomas; Jones, Jonathan D G (2004). The Transcriptional Innate Immune Response to flg22. Interplay and Overlap with Avr Gene-Dependent Defense Responses and Bacterial Pathogenesis. Plant Physiology, 135(2):1113-1128.
Zipfel, Cyril; Robatzek, Silke; Navarro, Lionel; Oakeley, Edward J; Jones, Jonathan D G; Felix, Georg; Boller, Thomas (2004). Bacterial disease resistance in Arabidopsis through flagellin perception. Nature, 428(6984):764-767.
Ariizumi, Tohru; Hatakeyama, Katsunori; Hinata, Kokichi; Inatsugi, Rie; Nishida, Ikuo; Sato, Shusei; Kato, Tomohiko; Tabata, Satoshi; Toriyama, Kinya (2004). Disruption of the novel plant protein NEF1 affects lipid accumulation in the plastids of the tapetum and exine formation of pollen, resulting in male sterility in Arabidopsis thaliana. The Plant Journal, 39:170-181.
Martinelli, D; Grossmann, G; Séquin, U; Brandl, H; Bachofen, R (2004). Effects of natural and chemically synthesized furanones on quorum sensing in Chromobacterium violaceum. BMC Microbiology, 4:25.
Kanaoka, Masahiro; Shimizu, Kentaro K; Okada, Kiyotaka (2004). KOMPEITO is essential for the sculpture of pollen wall and callose accumulation in Arabidopsis thaliana. Nippon Shokubutsu Seiri Gakkai Nenkai ayobi Shinpojiumu Koen Yshishu 45, University of Zurich.
Huck, N; Moore, J M; Federer, Michael; Grossniklaus, U (2003). The Arabidopsis mutant feronia disrupts the female gametophytic control of pollen tube reception. Development, 130(10):2149-2159.
Kanaoka, Masahiro; Shimizu, Kentaro K; Okada, Kiyotaka (2003). Genetic analysis of the male-female interactions between male and female tissues in Arabidopsis. Plant & Cell Physiology, 44:S21.
Takagi, Taro; Nakamura, Masanobu; Hayashi, Hiroaki; Inatsugi, Rie; Yano, Ryoichi; Nishida, Ikuo (2003). The leaf-order-dependent enhancement of freezing tolerance in cold-acclimated Arabidopsis rosettes is not correlated with the transcript levels of the cold-inducible transcription factors of CBF/DREB1. Plant & Cell Physiology, 44(9):922-931.
da Costa-Nunes, J A; Grossniklaus, U (2003). Unveiling the gene-expression profile of pollen. Genome Biology, 5:205.
Shimizu, Kentaro K (2002). Ecology meets molecular genetics in Arabidopsis. Population Ecology, 44(3):221-233.
Shimizu, Kentaro K (2002). A dream beyond scientific fields: in the special issue "how is the life as a scientist?". Science Journal Kagaku, 72(4):470-471.
Ariizumi, Tohru; Kishitani, Sachie; Inatsugi, Rie; Nishida, Ikuo; Murata, Norio; Toriyama, Kinya (2002). An increase in unsaturation of fatty acids in posphatidylglycerol from leaves improves the rates of photosynthesis and growth at low temperatures in transgenic rice seedlings. Plant & Cell Physiology, 43(7):751-758.
Kenta, Tanaka; Shimizu, Kentaro K; Nakagawa, Michiko; Okada, Kiyotaka; Hamid, Abang A; Nakashizuka, Tohru (2002). Multiple factors contribute to outcrossing in a tropical emergent Dipterocarpus tempehes, including a new pollen-tube guidance mechanism for self-incompatibility. American Journal of Botany, 89(1):60-66.
Inatsugi, Rie; Nakamura, Masanobu; Nishida, Ikuo (2002). Phosphatidylcholine biosynthesis at low temperature: differential expression of CTP:phosphorylcholine cytidylyltransferase in Arabidopsis thaliana. Plant & Cell Physiology, 43(11):1342-1350.
Kanaoka, Masahiro; Shimizu, Kentaro K; Okada, Kiyotaka (2001). Genetic dissection of signal exchange between male and female reproductive organs in Arabidopsis. Plant & Cell Physiology, 42:S42.