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Smith, Kevin; Li, Yunpeng; Piccinini, Filippo; Csucs, Gabor; Balazs, Csaba; Bevilacqua, Alessandro; Horvath, Peter (2015). CIDRE: an illumination-correction method for optical microscopy. Nature Methods, 12(5):404-406.
Vonaesch, Pascale; Cardini, Steven; Sellin, Mikael E; Goud, Bruno; Hardt, Wolf-Dietrich; Schauer, Kristine (2013). Quantitative insights into actin rearrangements and bacterial target site selection fromSalmonella Typhimurium infection of micropatterned cells. Cellular Microbiology, 15(11):1851-1865.
Trinh, Hung V; Grossmann, Jonas; Gehrig, Peter; Roschitzki, Bernd; Schlapbach, Ralph; Greber, Urs F; Hemmi, Silvio (2013). iTRAQ-based and label-free proteomics approaches for studies of human adenovirus infections. International Journal of Proteomics, 2013:581862.
Suomalainen, Maarit; Greber, Urs F (2013). Uncoating of non-enveloped viruses. Current Opinion in Virology, (12):192-197.
Goepfert, Arnaud; Stanger, Frédéric V; Dehio, Christoph; Schirmer, Tilman (2013). Conserved Inhibitory Mechanism and Competent ATP Binding Mode for Adenylyltransferases with Fic Fold. PLoS ONE, 8(5):e64901.
Omasits, Ulrich; Quebatte, Maxime; Stekhoven, Daniel J; Fortes, Claudia; Roschitzki, Bernd; Robinson, Mark D; Dehio, Christoph; Ahrens, Christian H (2013). Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome. Genome Research, 23(11):1916-1927.
Stergiou, Lilli; Bauer, Manuel; Mair, Waltraud; Bausch-Fluck, Damaris; Drayman, Nir; Wollscheid, Bernd; Oppenheim, Ariella; Pelkmans, Lucas (2013). Integrin-Mediated Signaling Induced by Simian Virus 40 Leads to Transient Uncoupling of Cortical Actin and the Plasma Membrane. PLoS ONE, 8(2):e55799.
Schmutz, Christoph; Ahrné, Erik; Kasper, Christoph Alexander; Tschon, Therese; Sorg, Isabel; Dreier, Roland Felix; Schmidt, Alexander; Arrieumerlou, Cecile (2013). Systems-level overview of host protein phosphorylation during Shigella flexneri infection revealed by phosphoproteomics. Molecular & Cellular Proteomics, 12(10):2952-2968.
Jurgeit, Andreas; McDowell, Robert; Moese, Stefan; Meldrum, Eric; Schwendener, Reto; Greber, Urs F (2012). Niclosamide is a proton carrier and targets acidic endosomes with broad antiviral effects. PLoS Pathogens, 8(10):e1002976.
Frei, Andreas P; Jeon, Ock-Youm; Kilcher, Samuel; Moest, Hansjoerg; Henning, Lisa M; Jost, Christian; Plückthun, Andreas; Mercer, Jason; Aebersold, Ruedi; Carreira, Erick M; Wollscheid, Bernd (2012). Direct identification of ligand-receptor interactions on living cells and tissues. Nature biotechnology, 30(10):997-1001.
Yakimovich, A; Gumpert, H; Burckhardt, C J; Lutschg, V A; Jurgeit, A; Sbalzarini, I F; Greber, U F (2012). Cell-free transmission of human adenovirus by passive mass transfer in cell culture simulated in a computer model. Journal of Virology, 86(18):10123-10137.
Ojosnegros, S; Delgado-Eckert, E; Beerenwinkel, N (2012). Competition-colonization trade-off promotes coexistence of low-virulence viral strains. Journal of the Royal Society Interface, 9(74):2244-2254.
Misselwitz, Benjamin; Barrett, Naomi; Kreibich, Saskia; Vonaesch, Pascale; Andritschke, Daniel; Rout, Samuel; Weidner, Kerstin; Sormaz, Milos; Songhet, Pascal; Horvath, Peter; Chabria, Mamta; Vogel, Viola; Spori, Doris M; Jenny, Patrick; Hardt, Wolf-Dietrich (2012). Near surface swimming of Salmonella Typhimurium explains target-site selection and cooperative invasion. PLoS Pathogens, 8(7):e1002810.
Beerenwinkel, Niko; Siebourg, Juliane (2012). Probability, Statistics, and Computational Science. Methods in Molecular Biology, 855:77-110.
Mercer, Jason; Snijder, Berend; Sacher, Raphael; Burkard, Christine; Bleck, Christopher Karl Ernst; Stahlberg, Henning; Pelkmans, Lucas; Helenius, Ari (2012). RNAi Screening Reveals Proteasome- and Cullin3-Dependent Stages in Vaccinia Virus Infection. Cell Reports, 2(4):1036-1047.
Siebourg, Juliane; Merdes, Gunter; Misselwitz, Benjamin; Hardt, Wolf-Dietrich; Beerenwinkel, Niko (2012). Stability of gene rankings from RNAi screens. Bioinformatics, 28(12):1612-1618.
Rouilly, Vincent; Pujadas, Eva; Hullár, Béla; Balázs, Csabas; Kunszt, Peter; Podvinec, Michael (2012). iBRAIN2: Automated analysis and data handling for RNAi screens. In: Gesing, Sandra; Glatard, Tristan; Olabarriaga, Silvia Delgado; Solomonides, Tony; Silverstein, Jonathan C; Montagnat, Johan; Gaignard, Alban; Krefting, Dagmar. HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences. Amsterdam: I O S Press, 205-213.
Geier, Florian; Fengos, Georgios; Iber, Dagmar (2011). A Computational Analysis of the Dynamic Roles of Talin, Dok1, and PIPKI for Integrin Activation. PLoS ONE, 6(11):e24808.
Bailly-Bechet, Marc; Benecke, Arndt; Hardt, Wolf Dietrich; Lanza, Valentina; Sturm, Alexander; Zecchina, Riccardo (2011). An externally modulated, noise-driven switch for the regulation of SPI1 in Salmonella enterica serovar Typhimurium. Journal of Mathematical Biology, 63(4):637-662.
Truttmann, Matthias C; Guye, Patrick; Dehio, Christoph (2011). BID-F1 and BID-F2 Domains of Bartonella henselae Effector Protein BepF Trigger Together with BepC the Formation of Invasome Structures. PLoS ONE, 6(10):e25106.
Truttmann, M C; Misselwitz, B; Huser, S; Hardt, W-D; Critchley, D R; Dehio, C (2011). Bartonella henselae engages inside-out and outside-in signaling by integrin 1 and talin1 during invasome-mediated bacterial uptake. Journal of Cell Science, 124(21):3591-3602.
Schroder, G; Schuelein, R; Quebatte, M; Dehio, C (2011). Conjugative DNA transfer into human cells by the VirB/VirD4 type IV secretion system of the bacterial pathogen Bartonella henselae. Proceedings of the National Academy of Sciences of the United States of America, 108(35):14643-14648.
Engel, Philipp; Salzburger, Walter; Liesch, Marius; Chang, Chao-Chin; Maruyama, Soichi; Lanz, Christa; Calteau, Alexandra; Lajus, Aurélie; Médigue, Claudine; Schuster, Stephan C; Dehio, Christoph (2011). Parallel Evolution of a Type IV Secretion System in Radiating Lineages of the Host-Restricted Bacterial Pathogen Bartonella. PLoS Genetics, 7(2):e1001296.
Misselwitz, Benjamin; Kreibich, Saskia K; Rout, Samuel; Stecher, Bärbel; Periaswamy, Balamurugan; Hardt, Wolf-Dietrich (2011). Salmonella enterica Serovar Typhimurium Binds to HeLa Cells via Fim-Mediated Reversible Adhesion and Irreversible Type Three Secretion System 1-Mediated Docking. Infection and Immunity, 79(1):330-341.
Delgado-Eckert, Edgar; Ojosnegros, Samuel; Beerenwinkel, Niko (2011). The Evolution of Virulence in RNA Viruses under a Competition–Colonization Trade-Off. Bulletin of Mathematical Biology, 73(8):1881-1908.
Schmidt, Florian Ingo; Bleck, Christopher Karl Ernst; Helenius, Ari; Mercer, Jason (2011). Vaccinia extracellular virions enter cells by macropinocytosis and acid-activated membrane rupture. The EMBO Journal, 30(17):3647-3661.
Misselwitz, B; Strittmatter, G; Periaswamy, B; Schlumberger, M C; Rout, S; Horvath, P; Kozak, K; Hardt, W D (2010). Enhanced CellClassifier: a multi-class classification tool for microscopy images. BMC Bioinformatics, 11:30.
Hofmann, A; Gerrits, B; Schmidt, A; Bock, T; Bausch-Fluck, D; Aebersold, R; Wollscheid, B (2010). Proteomic cell surface phenotyping of differentiating acute myeloid leukemia cells. Blood, 116(13):e26-34.
Vayssier-Taussat, Muriel; Le Rhun, Danielle; Deng, Hong Kuan; Biville, Francis; Cescau, Sandra; Danchin, Antoine; Marignac, Geneviève; Lenaour, Evelyne; Boulouis, Henri Jean; Mavris, Maria; Arnaud, Lionel; Yang, Huanming; Wang, Jing; Quebatte, Maxime; Engel, Philipp; Saenz, Henri; Dehio, Christoph (2010). The Trw Type IV Secretion System of Bartonella Mediates Host-Specific Adhesion to Erythrocytes. PLoS Pathogens, 6(6):e1000946.
