Navigation auf zora.uzh.ch
Navigation auf zora.uzh.ch
Spühler, Isabelle A; Conley, Gaurasundar M; Scheffold, Frank; Sprecher, Simon G (2016). Super resolution imaging of genetically labeled synapses in drosophila brain tissue. Frontiers in Cellular Neuroscience:10:142.
Smith, Kevin; Li, Yunpeng; Piccinini, Filippo; Csucs, Gabor; Balazs, Csaba; Bevilacqua, Alessandro; Horvath, Peter (2015). CIDRE: an illumination-correction method for optical microscopy. Nature Methods, 12(5):404-406.
Munglani, Gautam; Vetter, Roman; Wittel, Falk K; Herrmann, Hans J (2015). Orthotropic rotation-free thin shell elements. Computational Mechanics, 56(5):785-793.
Bonde, Marie Mi; Voegeli, Sylvia; Baudrimont, Antoine; Seraphin, Bertrand; Becskei, Attila (2014). Quantification of pre-mRNA escape rate and synergy in splicing. Nucleic Acids Research, 42(20):12847-12860.
Sévin, Daniel C; Sauer, Uwe (2014). Ubiquinone accumulation improves osmotic-stress tolerance in Escherichia coli. Nature Chemical Biology, 10(4):266-272.
Quinodoz, Mathieu; Gobet, Cédric; Naef, Felix; Gustafson, Kyle B (2014). Characteristic bimodal profiles of RNA polymerase II at thousands of active mammalian promoters. Genome Biology, 15(6):R85.
Goldie, Kenneth N; Abeyrathne, Priyanka; Kebbel, Fabian; Chami, Mohamed; Ringler, Philippe; Stahlberg, Henning (2014). Cryo-electron microscopy of membrane proteins. Methods in Molecular Biology, 1117:325-41.
Giss, Dominic; Kemmerling, Simon; Dandey, Venkata; Stahlberg, Henning; Braun, Thomas (2014). Exploring the interactome: microfluidic isolation of proteins and interacting partners for quantitative analysis by electron microscopy. Analytical Chemistry, 86(10):4680-4687.
Gilardi, Federica; Migliavacca, Eugenia; Naldi, Aurélien; Baruchet, Michaël; Canella, Donatella; Le Martelot, Gwendal; Guex, Nicolas; Desvergne, Béatrice (2014). Genome-Wide Analysis of SREBP1 Activity around the Clock Reveals Its Combined Dependency on Nutrient and Circadian Signals. PLoS Genetics, 10(3):e1004155.
Kowal, Julia; Chami, Mohamed; Baumgartner, Paul; Arheit, Marcel; Chiu, Po-Lin; Rangl, Martina; Scheuring, Simon; Schröder, Gunnar F; Nimigean, Crina M; Stahlberg, Henning (2014). Ligand-induced structural changes in the cyclic nucleotide-modulated potassium channel MloK1. Nature Communications, 5:3106.
Feller, Chrystel; Gabriel, Jean-Pierre; Mazza, Christian; Yerly, Florence (2014). Pattern formation in auxin flux. Journal of Mathematical Biology, 68(4):879-909.
Bonhoure, N; Bounova, G; Bernasconi, D; Praz, V; Lammers, F; Canella, D; Willis, I M; Herr, W; Hernandez, N; Delorenzi, M; Hernandez, N; Delorenzi, M; Deplancke, B; Desvergne, B; Guex, N; Herr, W; Naef, F; Rougemont, J; Schibler, U; Andersin, T; Cousin, P; Gilardi, F; Gos, P; Lammers, F; Raghav, S; Villeneuve, D; Fabbretti, R; Vlegel, V; Xenarios, I; Migliavacca, E; Praz, V; David, F; Jarosz, Y; Kuznetsov, D; Liechti, R; Martin, O; Delafontaine, J; Cajan, J; Gustafson, K; Krier, I; Leleu, M; Molina, N; Naldi, A; Rib, L; Symul, L; Bounova, G (2014). Quantifying ChIP-seq data: a spiking method providing an internal reference for sample-to-sample normalization. Genome Research, 24(7):1157-1168.
Bernard, Thomas; Bridge, Alan; Morgat, Anne; Moretti, Sébastien; Xenarios, Ioannis; Pagni, Marco (2014). Reconciliation of metabolites and biochemical reactions for metabolic networks. Briefings in Bioinformatics, 15(1):123-135.
Moharana, Kedar; Zabeau, Lennart; Peelman, Frank; Ringler, Philippe; Stahlberg, Henning; Tavernier, Jan; Savvides, Savvas N (2014). Structural and mechanistic paradigm of leptin receptor activation revealed by complexes with wild-type and antagonist leptins. Structure, 22(6):866-877.
Ramakrishnan, Chandrasekhar; Bieri, Andrej; Sauter, Nora; Roizard, Sophie; Ringler, Philippe; Müller, Shirley A; Goldie, Kenneth N; Enimanev, Kaloyan; Stahlberg, Henning; Rinn, Bernd; Braun, Thomas (2014). openBEB: open biological experiment browser for correlative measurements. BMC Bioinformatics, 15:84.
Leppänen, Veli-Matti; Tvorogov, Denis; Kisko, Kaisa; Prota, Andrea E; Jeltsch, Michael; Anisimov, Andrey; Markovic-Mueller, Sandra; Stuttfeld, Edward; Goldie, Kenneth N; Ballmer-Hofer, Kurt; Alitalo, Kari (2013). Structural and mechanistic insights into VEGF receptor 3 ligand binding and activation. Proceedings of the National Academy of Sciences of the United States of America, 110(32):12960-12965.
Woodruff, Kristina; Fidalgo, Luis M; Gobaa, Samy; Lutolf, Matthias P; Maerkl, Sebastian J (2013). Live Mammalian Cell Arrays. Nature Methods, 10(6):550-552.
Andreasen, Sidsel Ø; Chong, Siow-Feng; Wohl, Benjamin M; Goldie, Kenneth N; Zelikin, Alexander N (2013). Poly(vinyl alcohol) physical hydrogel nanoparticles, not polymer solutions, exert inhibition of nitric oxide synthesis in cultured macrophages. Biomacromolecules, 14(5):1687-95.
Sunnåker, Mikael; Zamora-Sillero, Elias; Dechant, Reinhard; Ludwig, Christina; Busetto, Alberto Giovanni; Wagner, Andreas; Stelling, Joerg (2013). Automatic Generation of Predictive Dynamic Models Reveals Nuclear Phosphorylation as the Key Msn2 Control Mechanism. Science Signaling, 6(277):ra41.
Vonaesch, Pascale; Cardini, Steven; Sellin, Mikael E; Goud, Bruno; Hardt, Wolf-Dietrich; Schauer, Kristine (2013). Quantitative insights into actin rearrangements and bacterial target site selection fromSalmonella Typhimurium infection of micropatterned cells. Cellular Microbiology, 15(11):1851-1865.
Shimobayashi, Mitsugu; Oppliger, Wolfgang; Moes, Suzette; Jenö, Paul; Hall, Michael N (2013). TORC1-regulated protein kinase Npr1 phosphorylates Orm to stimulate complex sphingolipid synthesis. Molecular Biology of the Cell, 24:870-881.
Weidmann, Simon; Barylyuk, Konstantin; Nespovitaya, Nadezhda; Mädler, Stefanie; Zenobi, Renato (2013). A New, Modular Mass Calibrant for High-Mass MALDI-MS. Analytical Chemistry, 85:3425-3432.
Prota, Andrea E; Bargsten, Katja; Zurwerra, Didier; Field, Jessica J; Díaz, José Fernando; Altmann, Karl-Heinz; Steinmetz, Michel O (2013). Molecular Mechanism of Action of Microtubule-Stabilizing Anticancer Agents. Science, 339(6119):587-590.
Simicevic, Jovan; Schmid, Adrien W; Gilardoni, Paola A; Zoller, Benjamin; Raghav, Sunil K; Krier, Irina; Gubelmann, Carinne; Lisacek, Frédérique; Naef, Felix; Moniatte, Marc; Deplancke, Bart (2013). Absolute quantification of transcription factors during cellular differentiation using multiplexed targeted proteomics. Nature Methods, 10(6):570-576.
Goepfert, Arnaud; Stanger, Frédéric V; Dehio, Christoph; Schirmer, Tilman (2013). Conserved Inhibitory Mechanism and Competent ATP Binding Mode for Adenylyltransferases with Fic Fold. PLoS ONE, 8(5):e64901.
Lemgruber, Leandro; Kudryashev, Mikhail; Dekiwadia, Chaitali; Riglar, David T; Baum, Jake; Stahlberg, Henning; Ralph, Stuart A; Frischknecht, Friedrich (2013). Cryo-electron tomography reveals four-membrane architecture of the Plasmodium apicoplast. Malaria Journal, 12:25.
Kudryashev, M; Stenta, M; Schmelz, S; Amstutz, M; Wiesand, U; Castano-Diez, D; Degiacomi, M T; Munnich, S; Bleck, C K; Kowal, J; Diepold, A; Heinz, D W; Dal Peraro, M; Cornelis, G R; Stahlberg, H (2013). In situ structural analysis of the Yersinia enterocolitica injectisome. eLife, 2:e00792-e00792.
Tiwari, Neha; Meyer-Schaller, Nathalie; Arnold, Phil; Antoniadis, Helena; Pachkov, Mikhail; van Nimwegen, Erik; Christofori, Gerhard (2013). Klf4 is a transcriptional regulator of genes critical for EMT, including Jnk1 (Mapk8). PLoS ONE, 8(2):e57329.
Sbalzarini, Ivo F (2013). Modeling and simulation of biological systems from image data. BioEssays, 35(5):482-490.
Steeb, Benjamin; Claudi, Beatrice; Burton, Neil A; Tienz, Petra; Schmidt, Alexander; Farhan, Hesso; Mazé, Alain; Bumann, Dirk (2013). Parallel Exploitation of Diverse Host Nutrients Enhances Salmonella Virulence. PLoS Pathogens, 9(4):e1003301.
Tiwari, Neha; Tiwari, Vijay; Waldmeier, Lorenz; Balwierz, Piotr J; Arnold, Phil; Pachkov, Mikhail; Meyer-Schaller, Nathalie; Schübeler, Dirk; van Nimwegen, Erik; Christofori, Gerhard (2013). Sox4 is a master regulator of epithelial-mesenchymal transition by controlling ezh2 expression and epigenetic reprogramming. Cancer Cell, 23(6):768-83.
Delgado-Gonzalo, R; Unser, M (2013). Spline-based framework for interactive segmentation in biomedical imaging. IRBM, 34(3):235-243.
Limenitakis, Julien; Oppenheim, Rebecca D; Creek, Darren J; Foth, Bernardo J; Barrett, Michael P; Soldati-Favre, Dominique (2013). The 2-methylcitrate cycle is implicated in the detoxification of propionate in Toxoplasma gondii. Molecular Microbiology, 87(4):894-908.
Blaskovic, Sanja; Blanc, Mathieu; van der Goot, F Gisou (2013). What does S-palmitoylation do to membrane proteins? FEBS Journal, 280(12):2766-2774.
Kiefer, P; Schmitt, U; Vorholt, J A (2013). eMZed: an open source framework in Python for rapid and interactive development of LC/MS data analysis workflows. Bioinformatics, 29(7):963-964.
Mary, Camille; Duek, Paula; Salleron, Lisa; Tienz, Petra; Bumann, Dirk; Bairoch, Amos; Lane, Lydie (2012). Functional Identification of APIP as Human mtnB, a Key Enzyme in the Methionine Salvage Pathway. PLoS ONE, 7(12):e52877.
van der Westen, Rebecca; Hosta-Rigau, Leticia; Sutherland, Duncan S; Goldie, Kenneth N; Albericio, Fernando; Postma, Almar; Städler, Brigitte (2012). Myoblast cell interaction with polydopamine coated liposomes. Biointerphases, 7(1-4):8.
Rockel, Sylvie; Geertz, Marcel; Hens, Korneel; Deplancke, Bart; Maerkl, Sebastian J (2012). iSLIM: a comprehensive approach to mapping and characterizing gene regulatory networks. Nucleic Acids Research:1-8.
Geertz, Marcel; Shore, David; Maerkl, Sebastian J (2012). Massively parallel measurements of molecular interaction kinetics on a microfluidic platform. Proceedings of the National Academy of Sciences of the United States of America, 109(41):16540-16545.
Schröter, Christian; Ares, Saúl; Morelli, Luis G; Isakova, Alina; Hens, Korneel; Soroldoni, Daniele; Gajewski, Martin; Jülicher, Frank; Maerkl, Sebastian J; Deplancke, Bart; Oates, Andrew C (2012). Topology and Dynamics of the Zebrafish Segmentation Clock Core Circuit. PLoS Biology, 10(7):1-20.
Rajkumar, Arun S; Maerkl, Sebastian J (2012). Rapid Synthesis Of Defined Eukaryotic Promoter Libraries. ACS Synthetic Biology, 1:483-490.
Geertz, Marcel; Rockel, Sylvie; Maerkl, Sebastian J (2012). A high-throughput microfluidic method for generating and characterizing transcription factor mutant libraries. Methods in Molecular Biology, 813:107-123.
Reboux, Sylvain; Schrader, Birte; Sbalzarini, Ivo F (2012). A self-organizing Lagrangian particle method for adaptive-resolution advection–diffusion simulations. Journal of Computational Physics, 231(9):3623-3646.
Koeppl, Heinz; Zechner, Christoph; Ganguly, Arnab; Pelet, Serge; Peter, Matthias (2012). Accounting for extrinsic variability in the estimation of stochastic rate constants. International Journal of Robust and Nonlinear Control, 22(10):1103-1119.
Routier-Kierzkowska, A -L; Weber, A; Kochova, P; Felekis, D; Nelson, B J; Kuhlemeier, C; Smith, R S (2012). Cellular Force Microscopy for in Vivo Measurements of Plant Tissue Mechanics. Plant Physiology, 158(4):1514-1522.
Hosta-Rigau, Leticia; Jensen, Bettina E B; Fjeldsø, Kit S; Postma, Almar; Li, Guoxin; Goldie, Kenneth N; Albericio, Fernando; Zelikin, Alexander N; Städler, Brigitte (2012). Drug Delivery: Surface-Adhered Composite Poly(Vinyl Alcohol) Physical Hydrogels: Polymersome-Aided Delivery of Therapeutic Small Molecules. Advanced Healthcare Materials, 1(6):791-5.
Delgado-Gonzalo, R; Thévenaz, P; Unser, M (2012). Exponential splines and minimal-support bases for curve representation. Computer Aided Geometric Design, 29(2):109-128.
Awile, Omar; Büyükkeçeci, Ferit; Reboux, Sylvain; Sbalzarini, Ivo F (2012). Fast neighbor lists for adaptive-resolution particle simulations. Computer Physics Communications, 183(5):1073-1081.
Le Martelot, Gwendal; Canella, Donatella; Symul, Laura; Migliavacca, Eugenia; Gilardi, Federica; Liechti, Robin; Martin, Olivier; Harshman, Keith; Delorenzi, Mauro; Desvergne, Béatrice; Herr, Winship; Deplancke, Bart; Schibler, Ueli; Rougemont, Jacques; Guex, Nicolas; Hernandez, Nouria; Naef, Felix (2012). Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles. PLoS Biology, 10(11):e1001442.
Loizides-Mangold, Ursula; David, Fabrice P A; Nesatyy, Victor J; Kinoshita, Taroh; Riezman, Howard (2012). Glycosylphosphatidylinositol anchors regulate glycosphingolipid levels. Journal of Lipid Research, 53(8):1522-34.
Samol, I; Shapiguzov, A; Ingelsson, B; Fucile, G; Crevecoeur, M; Vener, A V; Rochaix, J -D; Goldschmidt-Clermont, M (2012). Identification of a Photosystem II Phosphatase Involved in Light Acclimation in Arabidopsis. Plant Cell, 24(6):2596-2609.
Lim, L; Jackson-Lewis, V; Wong, L C; Shui, G H; Goh, A X H; Kesavapany, S; Jenner, A M; Fivaz, M; Przedborski, S; Wenk, M R (2012). Lanosterol induces mitochondrial uncoupling and protects dopaminergic neurons from cell death in a model for Parkinson's disease. Cell Death and Differentiation, 19(3):416-27.
Chitwood, D H; Headland, L R; Ranjan, A; Martinez, C C; Braybrook, S A; Koenig, D P; Kuhlemeier, C; Smith, R S; Sinha, N R (2012). Leaf Asymmetry as a Developmental Constraint Imposed by Auxin-Dependent Phyllotactic Patterning. Plant Cell, 24(6):2318-2327.
Kudryashev, Mikhail; Castaño-Díez, Daniel; Stahlberg, Henning (2012). Limiting factors in single particle cryo electron tomography. Computational and Structural Biotechnology Journal, 1(2):online.
Guenot, B; Bayer, E; Kierzkowski, D; Smith, R S; Mandel, T; Zadnikova, P; Benkova, E; Kuhlemeier, C (2012). PIN1-Independent Leaf Initiation in Arabidopsis. Plant Physiology, 159(4):1501-1510.
Brankatschk, B; Wichert, S P; Johnson, S D; Schaad, O; Rossner, M J; Gruenberg, J (2012). Regulation of the EGF Transcriptional Response by Endocytic Sorting. Science Signaling, 5(215):ra21.
Delgado-Gonzalo, Ricard; Thévenaz, Philippe; Seelamantula, Chandra Sekhar; Unser, Michael (2012). Snakes with an ellipse-reproducing property. IEEE transactions on image processing : a publication of the IEEE Signal Processing Society, 21(3):1258-71.
Loewith, Robbie; Hall, Michael N (2011). Target of Rapamycin (TOR) in Nutrient Signaling and Growth Control. Genetics, 189:1177 -1201.
Hamaratoglu, Fisun; de Lachapelle, Aitana Morton; Pyrowolakis, George; Bergmann, Sven; Affolter, Markus (2011). Dpp signaling activity requires pentagone to scale with tissue size in the growing drosophila wing imaginal disc. PLoS Biology, 9:1-17.
Zinzalla, Vittoria; Stracka, Daniele; Oppliger, Wolfgang; Hall, Michael N (2011). Activation of mTORC2 by Association with the Ribosome. Cell, 144:757-768.
Maerkl, Sebastian J (2011). Next generation microfluidic platforms for high-throughput protein biochemistry. Current Opinion in Biotechnology, 22(1):59-65.
Bailly-Bechet, Marc; Benecke, Arndt; Hardt, Wolf Dietrich; Lanza, Valentina; Sturm, Alexander; Zecchina, Riccardo (2011). An externally modulated, noise-driven switch for the regulation of SPI1 in Salmonella enterica serovar Typhimurium. Journal of Mathematical Biology, 63(4):637-662.
Truttmann, M C; Misselwitz, B; Huser, S; Hardt, W-D; Critchley, D R; Dehio, C (2011). Bartonella henselae engages inside-out and outside-in signaling by integrin 1 and talin1 during invasome-mediated bacterial uptake. Journal of Cell Science, 124(21):3591-3602.
Schoen, Ingmar; Ries, Jonas; Klotzsch, Enrico; Ewers, Helge; Vogel, Viola (2011). Binding-activated localization microscopy of DNA structures. Nano letters, 11(9):4008-4011.
Hermes, Jens P; Sander, Fabian; Peterle, Torsten; Cioffi, Carla; Ringler, Philippe; Pfohl, Thomas; Mayor, Marcel (2011). Direct control of the spatial arrangement of gold nanoparticles in organic-inorganic hybrid superstructures. Small, 7(7):920-9.
Ramaswamy, Rajesh; Sbalzarini, Ivo F (2011). Exact on-lattice stochastic reaction-diffusion simulations using partial-propensity methods. Journal of Chemical Physics, 135(24):244103.
Pelet, Serge; Peter, Matthias (2011). Fluorescent-Based Quantitative Measurements of Signal Transduction in Single Cells. In: Koeppl, Heinz; Densmore, Douglas; Setti, Gianluca; di Bernardo, Mario. Design and Analysis of Biomolecular Circuits: Engineering Approaches to Systems and Synthetic Biology. New York, USA: Springer, 369-394.
Dudkina, N V; Kudryashev, M; Stahlberg, H; Boekema, E J (2011). Interaction of complexes I, III, and IV within the bovine respirasome by single particle cryoelectron tomography. Proceedings of the National Academy of Sciences of the United States of America, 108(37):15196-15200.
Cheng, Danni; Jenner, Andrew M; Shui, Guanghou; Cheong, Wei Fun; Mitchell, Todd W; Nealon, Jessica R; Kim, Woojin S; McCann, Heather; Wenk, Markus R; Halliday, Glenda M; Garner, Brett (2011). Lipid pathway alterations in Parkinson's disease primary visual cortex. PLoS ONE, 6(2):e17299.
Ramaswamy, Rajesh; Sbalzarini, Ivo F; González-Segredo, Nélido (2011). Noise-Induced Modulation of the Relaxation Kinetics around a Non-Equilibrium Steady State of Non-Linear Chemical Reaction Networks. PLoS ONE, 6(1):e16045.
Brankatschk, Ben; Pons, Véronique; Parton, Robert G; Gruenberg, Jean (2011). Role of SNX16 in the dynamics of tubulo-cisternal membrane domains of late endosomes. PLoS ONE, 6(7):e21771.
Delgado-Eckert, Edgar; Ojosnegros, Samuel; Beerenwinkel, Niko (2011). The Evolution of Virulence in RNA Viruses under a Competition–Colonization Trade-Off. Bulletin of Mathematical Biology, 73(8):1881-1908.
Papadopoulou, Aikaterini S; Dooley, James; Linterman, Michelle A; Pierson, Wim; Ucar, Olga; Kyewski, Bruno; Zuklys, Saulius; Hollander, Georg A; Matthys, Patrick; Gray, Daniel H D; De Strooper, Bart; Liston, Adrian (2011). The thymic epithelial microRNA network elevates the threshold for infection-associated thymic involution via miR-29a mediated suppression of the IFN-α receptor. Nature Immunology, 13(2):181-187.
Pelet, S; Rudolf, F; Nadal-Ribelles, M; de Nadal, E; Posas, F; Peter, M (2011). Transient activation of the HOG MAPK pathway regulates bimodal gene expression. Science, 332(6030):732-735.
Schmidt, Florian Ingo; Bleck, Christopher Karl Ernst; Helenius, Ari; Mercer, Jason (2011). Vaccinia extracellular virions enter cells by macropinocytosis and acid-activated membrane rupture. The EMBO Journal, 30(17):3647-3661.
Soulard, Alexandre; Cremonesi, Alessio; Moes, Suzette; Schütz, Frédéric; Jenö, Paul; Hall, Michael N (2010). The Rapamycin-sensitive Phosphoproteome Reveals That TOR Controls Protein Kinase A Toward Some But Not All Substrates. Molecular Biology of the Cell, 21:3475-3486.
Awile, Omar; Demirel, Ömer; Sbalzarini, Ivo F; Simos, Theodore E; Psihoyios, George; Tsitouras, Ch (2010). Toward an Object-Oriented Core of the PPM Library. In: International Conference of Numerical Analysis and Applied Mathematics (ICNAAM), Rhodes, Greece, 19 September 2010 - 25 September 2010. American Institute of Physics, 1313-1316.
Geertz, Marcel; Maerkl, Sebastian J (2010). Experimental strategies for studying transcription factor-DNA binding specificities. Briefings in Functional Genomics:1-12.
Ramaswamy, Rajesh; Sbalzarini, Ivo F (2010). A partial-propensity variant of the composition-rejection stochastic simulation algorithm for chemical reaction networks. The Journal of chemical physics, 132(4):044102.
Polyansky, Anton A; Ramaswamy, Rajesh; Volynsky, Pavel E; Sbalzarini, Ivo F; Marrink, Siewert J; Efremov, Roman G (2010). Antimicrobial Peptides Induce Growth of Phosphatidylglycerol Domains in a Model Bacterial Membrane. Journal of Physical Chemistry Letters, 1(20):3108-3111.
Helmuth, Jo A; Paul, Grégory; Sbalzarini, Ivo F (2010). Beyond co-localization: inferring spatial interactions between sub-cellular structures from microscopy images. BMC Bioinformatics, 11(1):372.
Dechant, Reinhard; Binda, Matteo; Lee, Sung Sik; Pelet, Serge; Winderickx, Joris; Peter, Matthias (2010). Cytosolic pH is a second messenger for glucose and regulates the PKA pathway through V‐ATPase. The EMBO Journal, 29(15):2515-2526.
Schluck, T; Aegerter, C M (2010). Photo-elastic properties of the wing imaginal disc of Drosophila. European Physical Journal E - Soft Matter and Biological Physics, 33(2):111-115.
Hofmann, A; Gerrits, B; Schmidt, A; Bock, T; Bausch-Fluck, D; Aebersold, R; Wollscheid, B (2010). Proteomic cell surface phenotyping of differentiating acute myeloid leukemia cells. Blood, 116(13):e26-34.
Szabad, János (2010). Putting together rather than taking apart. EMBO Reports, 11(12):904-906.
Shapiguzov, A; Ingelsson, B; Samol, I; Andres, C; Kessler, F; Rochaix, J -D; Vener, A V; Goldschmidt-Clermont, M (2010). The PPH1 phosphatase is specifically involved in LHCII dephosphorylation and state transitions in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America, 107(10):4782-4787.
Vayssier-Taussat, Muriel; Le Rhun, Danielle; Deng, Hong Kuan; Biville, Francis; Cescau, Sandra; Danchin, Antoine; Marignac, Geneviève; Lenaour, Evelyne; Boulouis, Henri Jean; Mavris, Maria; Arnaud, Lionel; Yang, Huanming; Wang, Jing; Quebatte, Maxime; Engel, Philipp; Saenz, Henri; Dehio, Christoph (2010). The Trw Type IV Secretion System of Bartonella Mediates Host-Specific Adhesion to Erythrocytes. PLoS Pathogens, 6(6):e1000946.
Bayati, B; Chatelain, P; Koumoutsakos, P (2009). D-leaping: Accelerating stochastic simulation algorithms for reactions with delays. Journal of Computational Physics, 228(16):5908-5916.
Kotte, Oliver; Heinemann, Matthias (2009). A divide-and-conquer approach to analyze underdetermined biochemical models. Bioinformatics, 25(4):519-525.
Mjolsness, E; Orendorff, D; Chatelain, P; Koumoutsakos, P (2009). An exact accelerated stochastic simulation algorithm. The Journal of chemical physics, 130(14):144110.
Smith, R S; Bayer, E M (2009). Auxin transport-feedback models of patterning in plants. Plant, Cell and Environment, 32(9):1258-1271.
Bayer, E M; Smith, R S; Mandel, T; Nakayama, N; Sauer, M; Prusinkiewicz, P; Kuhlemeier, C (2009). Integration of transport-based models for phyllotaxis and midvein formation. Genes and Development, 23(3):373-384.
Maerkl, Sebastian J (2009). Microfluidic High-Throughput Screening. Integrative Biology, 1:19-29.
Milde, F; Bergdorf, M; Koumoutsakos, P (2008). A hybrid model for three-dimensional simulations of sprouting angiogenesis. Biophysical journal, 95(7):3146-60.
Rossinelli, D; Bayati, B; Koumoutsakos, P (2008). Accelerated stochastic and hybrid methods for spatial simulations of reaction-diffusion systems. Chemical Physics Letters, 451(1-3):136 - 140.
Cinquemani, Eugenio; Milias-Argeitis, Andreas; Summers, Sean; Lygeros, John (2008). Stochastic dynamics of genetic networks: modelling and parameter identification. Bioinformatics, 24(23):2748-2754.
