Posch, Thomas; Pitsch, Gianna; Bruni, Estelle P (2021). Protists: Ciliates. In: n/a. Reference Module in Earth Systems and Environmental Sciences. Amsterdam: Elsevier, Epub ahead of print.

Läubli, Nino F; Burri, Jan T; Marquard, Julian; Vogler, Hannes; Mosca, Gabriella; Vertti-Quintero, Nadia; Shamsudhin, Naveen; deMello, Andrew; Grossniklaus, Ueli; Ahmed, Daniel; Nelson, Bradley J (2021). 3D mechanical characterization of single cells and small organisms using acoustic manipulation and force microscopy. Nature Communications, 12:2583.

Kocyan, Alexander; Fatsea,, Stavroula; Burri, Christian; Kocyan, Sophia; Joshi, Jasmin (2021). Addendum to the Orchid Flora of the Island of Kythira (Greece). Journal Europäischer Orchideen, 53(1):3-18.

Herger, Aline. Analysis of LRXs signaling complex and extensin domain function in Arabidopsis thaliana. 2021, University of Zurich, Faculty of Science.

Knapp, Deborah; Posch, Thomas (2021). Burgunderblutalge im Zürichsee. Aqua & Gas, 101(4):14-21.

Mujakić, Izabela; Andrei, Adrian-Stefan; Shabarova, Tanja; Fecskeová, Lívia Kolesár; Salcher, Michaela M; Piwosz, Kasia; Ghai, Rohit; Koblížek, Michal (2021). Common Presence of Phototrophic Gemmatimonadota in Temperate Freshwater Lakes. mSystems, 6(2):01241-20.

Poretti, Manuel. Comparative genomics and transcriptomics of Triticeae. 2021, University of Zurich, Faculty of Science.

Durán‐Viseras, Ana; Andrei, Adrian-Stefan; Vera‐Gargallo, Blanca; Ghai, Rohit; Sánchez‐Porro, Cristina; Ventosa, Antonio (2021). Culturomics-based genomics sheds light on the ecology of the new haloarchaeal genus Halosegnis. Environmental Microbiology, 23(7):3418-3434.

Stritt, Christoph; Roulin, Anne C (2021). Detecting Signatures of TE Polymorphisms in Short-Read Sequencing Data. In: Cho, Jungnam. Plant transposable elements. New York: Springer, 177-187.

Nenadić, Milica; Vermeer, Joop E M (2021). Dynamic cytokinin signalling landscapes during lateral root formation in Arabidopsis. Quantitative Plant Biology, 2(21):e13.

Müller, Marion Claudia. Genomic and genetic analysis of host and cultivar adaption in the cereal powdery mildew pathosystem. 2021, University of Zurich, Faculty of Science.

Bulzu, Paul-Adrian; Kavagutti, Vinicius Silva; Chiriac, Maria-Cecilia; Vavourakis, Charlotte D; Inoue, Keiichi; Kandori, Hideki; Andrei, Adrian-Stefan; Ghai, Rohit (2021). Heliorhodopsin Evolution Is Driven by Photosensory Promiscuity in Monoderms. mSphere, 6(6):e00661-21.

Gualdi, Stefano. Identification of fitness determinants in Burkholderia cenocepacia H111 by transposon sequencing. 2021, University of Zurich, Faculty of Science.

Bellés-Sancho, Paula; Lardi, Martina; Liu, Yilei; Hug, Sebastian; Pinto-Carbó, Marta Adriana; Zamboni, Nicola; Pessi, Gabriella (2021). Paraburkholderia phymatum Homocitrate Synthase NifV Plays a Key Role for Nitrogenase Activity during Symbiosis with Papilionoids and in Free-Living Growth Conditions. Cells, 10(4):952.

Shuka, Donald; Anxhela, Rredhi; Besimi, Gurra; Bachofen, Reinhard (2021). Photosynthetic activity of the lichen Xanthoria elegans in relation to the daily course of temperature and humidity, a field study in the Piora valley, Ticino, Switzerland. In: Pedruzzi, Raffaele; Bianconi, Filippo. Scienze alpine, la centralità di piora e del san gottardo. Bellinzona: Edizioni Centro Biologia Alpina di Piora, 73-84.

Cadot, Selma Florence. Plant root exudates shape the rizosphere microbiome and mediate context-specific plant-soil feedback. 2021, University of Zurich, Faculty of Science.

Baricz, Andreea; Chiriac, Cecilia Maria; Andrei, Adrian-Stefan; Bulzu, Paul‐Adrian; Levei, Erika Andrea; Cadar, Oana; Battes, Karina Paula; Cîmpean, Mirela; Șenilă, Marin; Cristea, Adorján; Muntean, Vasile; Alexe, Mircea; Coman, Cristian; Szekeres, Edina Kriszta; Sicora, Cosmin Ionel; Ionescu, Artur; Blain, David; O'Neill, William Kenneth; Edwards, Jessica; Hallsworth, John Edward; Banciu, Horia Leonard (2021). Spatio-temporal insights into microbiology of the freshwater-to-hypersaline, oxic-hypoxic-euxinic waters of Ursu Lake. Environmental Microbiology, 23(7):3523-3540.

Alameti, Era; Cani, Megi; Nezaj, Melitjan; Selgjekaj, Ledi; Schneller, Jakob; Bachofen, Reinhard (2021). The diversity of ferns and lycopods in Val Piora and measurements of ecological and physiological indicators on two widely distributed fern species at two different sites. In: Pedruzzi, Raffaele; Bianconi, Filippo. Scienze alpine, la centralità di piora e del san gottardo. Bellinzona: Edizioni Centro Biologia Alpina di Piora, 53-72.

Edlinger, Anna Theresa. The impact of agricultural management on European soil ecosystems. 2021, University of Zurich, Faculty of Science.

Kolodziej, Markus C. The use of a high-quality genome from the Swiss winter wheat line ArinaLrFor: genomic structure and isolation of leaf rust resistance genes. 2021, University of Zurich, Faculty of Science.

Bräunlich, Stephanie. Wheat disease resistance gene Lr34 and the role of abscisic acid. 2021, University of Zurich, Faculty of Science.

2020

Saikia, Eashan; Läubli, Nino F; Burri, Jan T; Rüggeberg, Markus; Schlepütz, Christian M; Vogler, Hannes; Burgert, Ingo; Herrmann, Hans J; Nelson, Bradley J; Grossniklaus, Ueli; Wittel, Falk K (2020). Kinematics governing mechanotransduction in the sensory hair of the Venus flytrap. International Journal of Molecular Sciences, 22:280.

Walkowiak, Sean; Gao, Liangliang; Monat, Cecile; et al; Kolodziej, Markus C; Copetti, Dario; Krattinger, Simon G; Keller, Beat; Wicker, Thomas; Halstead-Nussloch, Gwyneth; Paape, Timothy; Shimizu-Inatsugi, Rie; Shimizu, Kentaro K (2020). Multiple wheat genomes reveal global variation in modern breeding. Nature, 588(7837):277-283.

Steinbrenner, Adam D; Muñoz-Amatriaín, Maria; Chaparro, Antonio F; Aguilar-Venegas, Jessica Montserrat; Lo, Sassoum; Okuda, Satohiro; Glauser, Gaetan; Dongiovanni, Julien; Shi, Da; Hall, Marlo; Crubaugh, Daniel; Holton, Nicholas; Zipfel, Cyril; Abagyan, Ruben; Turlings, Ted C J; Close, Timothy J; Huffaker, Alisa; Schmelz, Eric A (2020). A receptor-like protein mediates plant immune responses to herbivore-associated molecular patterns. Proceedings of the National Academy of Sciences of the United States of America, 117(49):31510-31518.

Straub, Hervé; Eberl, Leo; Zinn, Manfred; Rossi, René M; Maniura-Weber, Katharina; Ren, Qun (2020). A microfluidic platform for in situ investigation of biofilm formation and its treatment under controlled conditions. Journal of Nanobiotechnology, 18:166.

Desnoyer, Nicholas; Howard, Gregory; Jong, Emma; Palanivelu, Ravishankar (2020). AtPIG-S, a predicted Glycosylphosphatidylinositol Transamidase subunit, is critical for pollen tube growth in Arabidopsis. BMC Plant Biology, 20:380.

Heredia-Ponce, Zaira; Gutiérrez-Barranquero, Jose Antonio; Purtschert-Montenegro, Gabriela; Eberl, Leo; Cazorla, Francisco M; de Vicente, Antonio (2020). Biological role of EPS from Pseudomonas syringae pv. syringae UMAF0158 extracellular matrix, focusing on a Psl-like polysaccharide. npj Biofilms and Microbiomes, 6:875.

Silva, Marisa O D; Pernthaler, Jakob (2020). Biomass addition alters community assembly in ultrafiltration membrane biofilms. Scientific Reports, 10:11552.

Desnoyer, Nicholas; Palanivelu, Ravishankar (2020). Bridging the GAPs in plant reproduction: a comparison of plant and animal GPI-anchored proteins. Plant Reproduction, 33(3-4):129-142.

Kartal, Önder; Schmid, Marc W; Grossniklaus, Ueli (2020). Cell type-specific genome scans of DNA methylation divergence indicate an important role for transposable elements. Genome Biology, 21:172.

Sailer, Christian; Stöcklin, Jürg; Grossniklaus, Ueli (2020). Dynamics of apomictic and sexual reproduction during primary succession on a glacier forefield in the Swiss Alps. Scientific Reports, 10:8269.

Abrouk, Michael; Ahmed, Hanin Ibrahim; Cubry, Philippe; Šimoníková, Denisa; Cauet, Stéphane; Pailles, Yveline; Bettgenhaeuser, Jan; Gapa, Liubov; Scarcelli, Nora; Couderc, Marie; Zekraoui, Leila; Kathiresan, Nagarajan; Čížková, Jana; Hřibová, Eva; Doležel, Jaroslav; Arribat, Sandrine; Bergès, Hélène; Wieringa, Jan J; Gueye, Mathieu; Kane, Ndjido A; Leclerc, Christian; Causse, Sandrine; Vancoppenolle, Sylvie; Billot, Claire; Wicker, Thomas; Vigouroux, Yves; Barnaud, Adeline; Krattinger, Simon G (2020). Fonio millet genome unlocks African orphan crop diversity for agriculture in a changing climate. Nature Communications, 11(1):4488.

Kato, Hiroaki; Onai, Kiyoshi; Abe, Akira; Shimizu, Motoki; Takagi, Hiroki; Tateda, Chika; Utsushi, Hiroe; Singkarabanit-Ogawa, Suthitar; Kitakura, Saeko; Ono, Erika; Zipfel, Cyril; Takano, Yoshitaka; Ishiura, Masahiro; Terauchi, Ryohei (2020). Lumi-Map, a real-time luciferase bioluminescence screen of mutants combined with MutMap, reveals Arabidopsis genes involved in PAMP-triggered immunity. Molecular Plant-Microbe Interactions, 33(12):1366-1380.

Tan, Shutang; Di Donato, Martin; Glanc, Matouš; Zhang, Xixi; Klíma, Petr; Liu, Jie; Bailly, Aurélien; Ferro, Noel; Petrášek, Jan; Geisler, Markus; Friml, Jiří (2020). Non-steroidal anti-inflammatory drugs target TWISTED DWARF1-regulated actin dynamics and auxin transport-mediated plant development. Cell Reports, 33(9):108463.

Hood, Stephanie E; Kofler, Xeniya V; Chen, Quiyu; Scott, Judah; Ortega, Jason; Lehmann, Michael (2020). Nuclear translocation ability of Lipin differentially affects gene expression and survival in fed and fasting Drosophila. Journal of Lipid Research, 61(12):1720-1732.

Thomas, Christoph; Aller, Stephen G; Beis, Konstantinos; Carpenter, Elisabeth P; et al; Martinoia, Enrico (2020). Structural and functional diversity calls for a new classification of ABC transporters. FEBS letters, 594(23):3767-3775.

Liu, Qikun; Bischof, Sylvain; Harris, C Jake; Zhong, Zhenhui; Zhan, Lingyu; Nguyen, Calvin; Rashoff, Andrew; Barshop, William D; Sun, Fei; Feng, Suhua; Potok, Magdalena; Gallego-Bartolome, Javier; Zhai, Jixian; Wohlschlegel, James A; Carey, Michael F; Long, Jeffrey A; Jacobsen, Steven E (2020). The characterization of Mediator 12 and 13 as conditional positive gene regulators in Arabidopsis. Nature Communications, 11:2798.

Secchi, Eleonora; Vitale, Alessandra; Miño, Gastón L; Kantsler, Vasily; Eberl, Leo; Rusconi, Roberto; Stocker, Roman (2020). The effect of flow on swimming bacteria controls the initial colonization of curved surfaces. Nature Communications, 11:2851.

Wyler, Michele; Stritt, Christoph; Walser, Jean-Claude; Baroux, Célia; Roulin, Anne C (2020). Impact of transposable elements on methylation and gene expression across natural accessions of Brachypodium distachyon. Genome Biology and Evolution, 12(11):1994-2001.

Tamburini, Giovanni; Bommarco, Riccardo; Wanger, Thomas Cherico; Kremen, Claire; van der Heijden, Marcel G A; Liebman, Matt; Hallin, Sara (2020). Agricultural diversification promotes multiple ecosystem services without compromising yield. Science Advances, 6(45):eaba1715.

Picart-Picolo, Ariadna; Grob, Stefan; Picault, Nathalie; Franek, Michal; Llauro, Christel; Halter, Thierry; Maier, Tom R; Jobet, Edouard; Descombin, Julie; Zhang, Panpan; Paramasivan, Vijayapalani; Baum, Thomas J; Navarro, Lionel; Dvořáčková, Martina; Mirouze, Marie; Pontvianne, Frédéric (2020). Large tandem duplications affect gene expression, 3D organization, and plant–pathogen response. Genome Research, 30(11):1583-1592.

Le Moigne, Alizée; Bartosiewicz, Maciej; Schaepman‐Strub, Gabriela; Abiven, Samuel; Pernthaler, Jakob (2020). The biogeochemical variability of Arctic thermokarst ponds is reflected by stochastic and niche‐driven microbial community assembly processes. Environmental Microbiology, 22(11):4847-4862.

Bjornson, Marta; Kajala, Kaisa; Zipfel, Cyril; Ding, Pingtao (2020). Low-cost and high-throughput RNA-seq library preparation for illumina sequencing from plant tissue. Bio-protocol, 10(20):e3799.

Šimek, Karel; Grujčić, Vesna; Mukherjee, Indranil; Kasalický, Vojtěch; Nedoma, Jiří; Posch, Thomas; Mehrshad, Maliheh; Salcher, Michaela M (2020). Cascading effects in freshwater microbial food webs by predatory Cercozoa, Katablepharidacea and ciliates feeding on aplastidic bacterivorous cryptophytes. FEMS Microbiology Ecology, 96(10):fiaa121.

Stöckle, Dorothee; Vermeer, Joop E M (2020). Plant biology: journey to the center of the Casparian Strip. Current Biology, 30(20):R1273-R1275.

Thor, Kathrin; Jiang, Shushu; Michard, Erwan; George, Jeoffrey; Scherzer, Sönke; Huang, Shouguang; Dindas, Julian; Derbyshire, Paul; Leitão, Nuno; DeFalco, Thomas A; Köster, Philipp; Hunter, Kerri; Kimura, Sachie; Gronnier, Julien; Stransfeld, Lena; Kadota, Yasuhiro; Bücherl, Christoph A; Charpentier, Myriam; Wrzaczek, Michael; MacLean, Daniel; Oldroyd, Giles E D; Menke, Frank L H; Roelfsema, M Rob G; Hedrich, Rainer; Feijó, José; Zipfel, Cyril (2020). The calcium-permeable channel OSCA1.3 regulates plant stomatal immunity. Nature, 585(7826):569-573.

Wittwer, Raphaël. Assessing and Improving the Multifunctionality of Swiss Arable Cropping Systems. 2020, University of Zurich, Faculty of Science.

Skalska, Aleksandra; Stritt, Christoph; Wyler, Michele; Williams, Hefin W; Vickers, Martin; Han, Jiwan; Tuna, Metin; Savas Tuna, Gulsemin; Susek, Karolina; Swain, Martin; Wóycicki, Rafał K; Chaudhary, Saurabh; Corke, Fiona; Doonan, John H; Roulin, Anne C; Hasterok, Robert; Mur, Luis A J (2020). Genetic and methylome variation in Turkish Brachypodium distachyon accessions differentiate two geographically distinct subpopulations. International Journal of Molecular Sciences, 21(18):6700.

Vitale, Alessandra; Paszti, Sarah; Takahashi, Kohei; Toyofuku, Masanori; Pessi, Gabriella; Eberl, Leo (2020). Mapping of the denitrification pathway in Burkholderia thailandensis by genome-wide mutant profiling. Journal of Bacteriology, 202(23):00304-20.

Hao, Pengchao; Xia, Jian; Liu, Jie; Di Donato, Martin; Pakula, Konrad; Bailly, Aurélien; Jasinski, Michal; Geisler, Markus (2020). Auxin-transporting ABC transporters are defined by a conserved D/E-P motif regulated by a prolylisomerase. Journal of Biological Chemistry, 295(37):13094-13105.

Stritt, Christoph; Wyler, Michele; Gimmi, Elena L; Pippel, Martin; Roulin, Anne C (2020). Diversity, dynamics and effects of long terminal repeat retrotransposons in the model grass Brachypodium distachyon. New Phytologist, 227(6):1736-1748.

Gimeno, A; Kägi, A; Drakopoulos, D; Bänziger, I; Lehmann, E; Forrer, H‐R; Keller, Beat; Vogelgsang, S (2020). From laboratory to the field: biological control of Fusarium graminearum on infected maize crop residues. Journal of applied microbiology, 129(3):680-694.

Lindner, Stefan; Keller, Bettina; Singh, Simrat P; Hasenkamp, Zsuzsanna; Jung, Esther; Müller, Marion C; Bourras, Salim; Keller, Beat (2020). Single residues in the LRR domain of the wheat PM3A immune receptor can control the strength and the spectrum of the immune response. The Plant Journal, 104(1):200-214.

Carbonnel, Samy; Das, Debatosh; Varshney, Kartikye; Kolodziej, Markus C; Villaécija-Aguilar, José A; Gutjahr, Caroline (2020). The karrikin signaling regulator SMAX1 controlsLotus japonicusroot and root hair development by suppressing ethylene biosynthesis. Proceedings of the National Academy of Sciences of the United States of America, 117(35):21757-21765.

Vandenbussche, Ian; Sass, Andrea; Pinto-Carbó, Marta; Mannweiler, Olga; Eberl, Leo; Coenye, Tom (2020). DNA methylation epigenetically regulates gene expression in Burkholderia cenocepacia and controls biofilm formation, cell aggregation, and motility. mSphere, 5(4):00455-20.

Rezzoagli, Chiara; Archetti, Martina; Mignot, Ingrid; Baumgartner, Michael; Kümmerli, Rolf (2020). Combining antibiotics with antivirulence compounds can have synergistic effects and reverse selection for antibiotic resistance in Pseudomonas aeruginosa. PLoS Biology, 18(8):e3000805.

Gu, Shaohua; Wei, Zhong; Shao, Zhengying; Friman, Ville-Petri; Cao, Kehao; Yang, Tianjie; Kramer, Jos; Wang, Xiaofang; Li, Mei; Mei, Xinlan; Xu, Yangchun; Shen, Qirong; Kümmerli, Rolf; Jousset, Alexandre (2020). Competition for iron drives phytopathogen control by natural rhizosphere microbiomes. Nature Microbiology, 5(8):1002-1010.

Jullien, Pauline E; Grob, Stefan; Marchais, Antonin; Pumplin, Nathan; Chevalier, Clement; Bonnet, Diane M V; Otto, Caroline; Schott, Gregory; Voinnet, Olivier (2020). Functional characterization of Arabidopsis ARGONAUTE 3 in reproductive tissues. The Plant Journal, 103(5):1796-1809.

Bischof, Sylvain (2020). Which Factors Control Starch Granule Initiation? Plant Cell, 32(8):2449-2450.

Vitale, Alessandra; Pessi, Gabriella; Urfer, Matthias; Locher, Hans H; Zerbe, Katja; Obrecht, Daniel; Robinson, John A; Eberl, Leo (2020). Identification of genes required for resistance to peptidomimetic antibiotics by transposon sequencing. Frontiers in Microbiology, 11:1681.

Habjanič, Jelena; Mathew, Anugraha; Eberl, Leo; Freisinger, Eva (2020). Deciphering the Enigmatic Function of Pseudomonas Metallothioneins. Frontiers in Microbiology, 11:1709.

Liu, Yilei; Bellich, Barbara; Hug, Sebastian; Eberl, Leo; Cescutti, Paola; Pessi, Gabriella (2020). The exopolysaccharide Cepacian plays a role in the establishment of the Paraburkholderia phymatum – Phaseolus vulgaris symbiosis. Frontiers in Microbiology, 11:1600.

Arribas-Hernández, Laura; Simonini, Sara; Hansen, Mathias Henning; Paredes, Esther Botterweg; Bressendorff, Simon; Dong, Yang; Østergaard, Lars; Brodersen, Peter (2020). Recurrent requirement for the m6A-ECT2/ECT3/ECT4 axis in the control of cell proliferation during plant organogenesis. Development, 147:dev189134.

Zupunski, Andrea. Role of Protein N-glycosylation during the Pollen Tube Reception in Arabidopsis thaliana. 2020, University of Zurich, Faculty of Science.

Burri, Jan T; Saikia, Eashan; Läubli, Nino F; Vogler, Hannes; Wittel, Falk K; Rüggeberg, Markus; Herrmann, Hans J; Burgert, Ingo; Nelson, Bradley J; Grossniklaus, Ueli (2020). A single touch can provide sufficient mechanical stimulation to trigger Venus flytrap closure. PLoS Biology, 18(7):e3000740.

Sathe, Santosh; Kümmerli, Rolf (2020). Antagonistic interactions subdue inter‐species green‐beard cooperation in bacteria. Journal of Evolutionary Biology, 33:1245-1255.

Santos Fernandez, Gorka. The Acid Growth Theory: a Fundamental Concept Revisited. 2020, University of Zurich, Faculty of Science.

Tsutsui, Hiroki; Yanagisawa, Naoki; Kawakatsu, Yaichi; Ikematsu, Shuka; Sawai, Yu; Tabata, Ryo; Arata, Hideyuki; Higashiyama, Tetsuya; Notaguchi, Michitaka (2020). Micrografting device for testing systemic signaling in Arabidopsis. The Plant Journal, 103(2):918-929.

Monte, Isabel (2020). Plant Evolution: Divergent Plants, Divergent Functions for C1HDZ Orthologs. Current Biology, 30(14):R817-R819.

Bischof, Sylvain (2020). Remodeling Chromatin in an ARID environment. Plant Cell, 32(7):2063-2064.

Sasse, Joelle; Kosina, Suzanne M; de Raad, Markus; Jordan, Jacob S; Whiting, Katherine; Zhalnina, Kateryna; Northen, Trent R (2020). Root morphology and exudate availability are shaped by particle size and chemistry in Brachypodium distachyon. Plant Direct, 4(7):e00207.

Oeyen, Jan Philip; Baa-Puyoulet, Patrice; Benoit, Joshua B; Beukeboom, Leo W; Bornberg-Bauer, Erich; Buttstedt, Anja; Calevro, Federica; Cash, Elizabeth I; Chao, Hsu; Charles, Hubert; et al; Sotiropoulos, Alexandros G; Niehuis, Oliver (2020). Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera. Genome Biology and Evolution, 12(7):1099-1188.

Pontvianne, Frédéric; Grob, Stefan (2020). Three-dimensional nuclear organization in Arabidopsis thaliana. Journal of Plant Research, 133(4):479-488.

Herger, Aline; Gupta, Shibu; Kadler, Gabor; Franck, Christina Maria; Boisson-Dernier, Aurélien; Ringli, Christoph (2020). Overlapping functions and protein-protein interactions of LRR-extensins in Arabidopsis. PLoS Genetics, 16(6):e1008847.

Sieber, Simon; Daeppen, Christophe; Jenul, Christian; Mannancherril, Vidya; Eberl, Leo; Gademann, Karl (2020). Biosynthesis and Structure Activity Relationship Investigations of the Diazeniumdiolate Antifungal Agent Fragin. Chembiochem, 21(11):1587-1592.

Tsuchimatsu, Takashi; Kakui, Hiroyuki; Yamazaki, Misako; Marona, Cindy; Tsutsui, Hiroki; Hedhly, Afif; Meng, Dazhe; Sato, Yutaka; Städler, Thomas; Grossniklaus, Ueli; Kanaoka, Masahiro M; Lenhard, Michael; Nordborg, Magnus; Shimizu, Kentaro K (2020). Adaptive Reduction of Male Gamete Number in the Selfing Plant Arabidopsis Thaliana. Nature Communications, 11:2885.

Steuernagel, Burkhard; Witek, Kamil; Krattinger, Simon G; Ramirez-Gonzalez, Ricardo H; Schoonbeek, Henk-jan; Yu, Guotai; Baggs, Erin; Witek, Agnieszka I; Yadav, Inderjit; Krasileva, Ksenia V; Jones, Jonathan D G; Uauy, Cristobal; Keller, Beat; Ridout, Christopher J; Wulff, Brande B H (2020). The NLR-annotator tool enables annotation of the intracellular immune receptor repertoire. Plant Physiology, 183(2):468-482.

Gimeno, Alejandro. New Tools to Advance the Biological Control of Fusarium graminearum by the Antagonist Clonostachys rosea. 2020, University of Zurich, Faculty of Science.

Pröschold, Thomas; Pitsch, Gianna; Darienko, Tatyana (2020). Micractinium tetrahymenae (Trebouxiophyceae, Chlorophyta), a new endosymbiont isolated from ciliates. Diversity, 12:200.

Thellmann, Martha; Andersen, Tonni Grube; Vermeer, Joop E M (2020). Translating ribosome affinity purification (trap) to investigate Arabidopsis thaliana root development at a cell type-specific scale. Journal of Visualized Experiments (Jove), 159:e60919.

Heiniger, Benjamin. The genetic architecture of cadmium and mercury accumulation and tolerance in the model legume Medicago truncatula. 2020, University of Zurich, Faculty of Science.

Hedhly, Afif; Nestorova, Anna; Herrmann, Anja; Grossniklaus, Ueli (2020). Acute heat stress during stamen development affects both the germline and sporophytic lineages in Arabidopsis thaliana (L.) Heynh. Environmental and Experimental Botany, 173:103992.

De Vrieze, Mout; Varadarajan, Adithi R; Schneeberger, Kerstin; Bailly, Aurélien; Rohr, Rudolf P; Ahrens, Christian H; Weisskopf, Laure (2020). Linking comparative genomics of nine potato-associated Pseudomonas isolates with their differing biocontrol potential against late blight. Frontiers in Microbiology, 11:857.

Cheval, Cécilia; Samwald, Sebastian; Johnston, Matthew G; de Keijzer, Jeroen; Breakspear, Andrew; Liu, Xiaokun; Bellandi, Annalisa; Kadota, Yasuhiro; Zipfel, Cyril; Faulkner, Christine (2020). Chitin perception in plasmodesmata characterizes submembrane immune-signaling specificity in plants. Proceedings of the National Academy of Sciences of the United States of America, 117(17):9621-9629.

Rexha, Kaltrina; Bego, Kristi; Zyruku, Dea; Shuka, Lulezim; Husi, René; Schneller, Jakob; Bachofen, Reinhard (2020). Alpine ecology, plant biodiversity and photosynthetic performance of marker plants in a nitrogen gradient induced by Alnus bushes. BMC Ecology, 20:165.

Lindner, Stefan. Insights into the Molecular Mechanisms that Underlie AVR Recognition and Immune Response of the Wheat NLR-Type Receptor PM3A. 2020, University of Zurich, Faculty of Science.

Zhou, Yeling; Vroegop-Vos, Irene A; Van Dijken, Anja J H; Van der Does, Dieuwertje; Zipfel, Cyril; Pieterse, Corné M J; Van Wees, Saskia C M (2020). Carbonic anhydrases CA1 and CA4 function in atmospheric CO2-modulated disease resistance. Planta, 251:75.

Long, Yuchen; Cheddadi, Ibrahim; Mosca, Gabriella; Mirabet, Vincent; Dumond, Mathilde; Kiss, Annamaria; Traas, Jan; Godin, Christophe; Boudaoud, Arezki (2020). Cellular heterogeneity in pressure and growth emerges from tissue topology and geometry. Current Biology, 30(8):1504-1516.e8.

Higgins, Steven; Gualdi, Stefano; Pinto‐Carbó, Marta; Eberl, Leo (2020). Copper resistance genes of Burkholderia cenocepacia H111 identified by transposon sequencing. Environmental Microbiology Reports, 12(2):241-249.

Wittwer, Raphaël A; van der Heijden, Marcel G A (2020). Cover crops as a tool to reduce reliance on intensive tillage and nitrogen fertilization in conventional arable cropping systems. Field Crops Research, 249:107736.

Liu, Guowei; Martinoia, Enrico (2020). How to survive on low potassium. Nature Plants, 6(4):332-333.

Cheung, Alice Y; Qu, Li-Jia; Russinova, Eugenia; Zhao, Yunde; Zipfel, Cyril (2020). Update on Receptors and Signaling. Plant Physiology, 182(4):1527-1530.

Moussu, Steven; Broyart, Caroline; Santos-Fernandez, Gorka; Augustin, Sebastian; Wehrle, Sarah; Grossniklaus, Ueli; Santiago, Julia (2020). Structural basis for recognition of RALF peptides by LRX proteins during pollen tube growth. Proceedings of the National Academy of Sciences of the United States of America, 117(13):7494-7503.

Grob, Stefan (2020). Three-dimensional chromosome organization in flowering plants. Briefings in Functional Genomics, 19(2):83-91.

Schaefer, Luisa Katharina; Parlange, Francis; Buchmann, Gabriele; Jung, Esther; Wehrli, Andreas; Herren, Gerhard; Müller, Marion Claudia; Stehlin, Jonas; Schmid, Roman; Wicker, Thomas; Keller, Beat; Bourras, Salim (2020). Cross-kingdom RNAi of pathogen effectors leads to quantitative adult plant resistance in wheat. Frontiers in Plant Science, 11:253.

Piwosz, Kasia; Shabarova, Tanja; Pernthaler, Jakob; Posch, Thomas; Šimek, Karel; Porcal, Petr; Salcher, Michaela M (2020). Bacterial and eukaryotic small-subunit amplicon data do not provide a quantitative picture of microbial communities, but they are reliable in the context of ecological interpretations. mSphere, 5(2):00052-20.

Diop, Seydina I; Subotic, Oliver; Giraldo‐Fonseca, Alejandro; Waller, Manuel; Kirbis, Alexander; Neubauer, Anna; Potente, Giacomo; Murray‐Watson, Rachel; Boskovic, Filip; Bont, Zoe; Hock, Zsofia; Payton, Adam C; Duijsings, Daniël; Pirovano, Walter; Conti, Elena; Grossniklaus, Ueli; McDaniel, Stuart F; Szövényi, Péter (2020). A pseudomolecule‐scale genome assembly of the liverwort Marchantia polymorpha. The Plant Journal, 101(6):1378-1396.

Wyder, Stefan; Rivera, Alejandro; Valdés, Ana E; Cañal, María Jesús; Gagliardini, Valeria; Fernández, Helena; Grossniklaus, Ueli (2020). Differential gene expression profiling of one- and two-dimensional apogamous gametophytes of the fern Dryopteris affinis ssp. affinis. Plant Physiology and Biochemistry, 148:302-311.

Poretti, Manuel; Praz, Coraline Rosalie; Meile, Lukas; Kälin, Carol; Schaefer, Luisa Katharina; Schläfli, Michael; Widrig, Victoria; Sanchez-Vallet, Andrea; Wicker, Thomas; Bourras, Salim (2020). Domestication of high-copy transposons underlays the wheat small RNA response to an obligate pathogen. Molecular Biology and Evolution, 37(3):839-848.

Schäfer, Luisa. Host-Induced Gene Silencing in Blumeria graminis f.sp. tritici. 2020, University of Zurich, Faculty of Science.

Tabrett, Alexandra; Horton, Matthew W (2020). The influence of host genetics on the microbiome. F1000Research, 9:84.

Aubry, Sylvain; Fankhauser, Niklaus; Ovinnikov, Serguei; Pružinská, Adriana; Stirnemann, Marina; Zienkiewicz, Krzysztof; Herrfurth, Cornelia; Feussner, Ivo; Hörtensteiner, Stefan (2020). Pheophorbide a may regulate Jasmonate signaling during dark-induced senescence. Plant Physiology, 182(2):776-791.

Caro, María del Pilar; Holton, Nicholas; Conti, Gabriela; Venturuzzi, Andrea Laura; Martínez‐Zamora, Martin Gustavo; Zipfel, Cyril; Asurmendi, Sebastian; Díaz‐Ricci, Juan Carlos (2020). The fungal subtilase AsES elicits a PTI‐like defence response in Arabidopsis thaliana plants independently of its enzymatic activity. Molecular Plant Pathology, 21(2):147-159.

Natonik-Białoń, Sandra; Borowska-Wykręt, Dorota; Mosca, Gabriella; Grelowski, Michał; Wrzalik, Roman; Smith, Richard S; Kwiatkowska, Dorota (2020). Deformation of a cell monolayer due to osmotic treatment: a case study of onion scale epidermis. Botany, 98(1):21-36.

Bailly, Aurélien (2020). How plants might recognize rhizospheric bacterial volatiles. In: Ryu, Choong-Min; Weisskopf, Laure; Piechulla, Birgit. Bacterial volatile compounds as mediators of airborne interactions. Singapore: Springer, 139-165.

Florez-Rueda, Ana Marcela; Waser, Lucas; Grossniklaus, Ueli (2020). Laser-assisted microdissection of plant embryos for transcriptional profiling. In: Bayer, Martin. Plant Embryogenesis : Methods and Protocols. Humana Press, New York: Springer, 127-139.

Kramer, Jos; López Carrasco, Miguel Ángel; Kümmerli, Rolf (2020). Positive linkage between bacterial social traits reveals that homogeneous rather than specialised behavioral repertoires prevail in natural Pseudomonas communities. FEMS Microbiology Ecology, 96(1):fiz185.

Burri, Jan T; Munglani, Gautam; Nelson, Bradley J; Grossniklaus, Ueli; Vogler, Hannes (2020). Quantification of mechanical forces and physiological processes involved in pollen tube growth using microfluidics and microrobotics. In: Geitmann, Anja. Pollen and Pollen Tube Biology : Methods and Protocols. Humana, New York: Springer, 275-292.

Vogler, Hannes; Burri, Jan T; Nelson, Bradley J; Grossniklaus, Ueli (2020). Simultaneous measurement of turgor pressure and cell wall elasticity in growing pollen tubes. In: Anderson, Charles T; Haswell, Elizabeth S; Dixit, Ram. Plant cell biology. New York: Elsevier, 297-310.

Zhang, Junling; van der Heijden, Marcel G A; Zhang, Fusuo; Bender, S Franz (2020). Soil biodiversity and crop diversification are vital components of healthy soils and agricultural sustainability. Frontiers of Agricultural Science and Engineering, 7(3):236.

Hu, Xueyun; Jia, Ting; Hörtensteiner, Stefan; Tanaka, Ayumi; Tanaka, Ryouichi (2020). Subcellular localization of chlorophyllase2 reveals it is not involved in chlorophyll degradation during senescence in Arabidopsis thaliana. Plant Science, 290:110314.

Demurtas, Olivia Costantina; de Brito Francisco, Rita; Martinoia, Enrico; Giuliano, Giovanni (2020). Transportomics for the characterization of plant apocarotenoid transmembrane transporters. In: Rodríguez-Concepción, Manuel; Welsch, Ralf. Plant and Food Carotenoids. Clifton, USA: Springer, 89-99.

Mukherjee, Indranil; Salcher, Michaela M; Andrei, Adrian-Stefan; Kavagutti, Vinicius Silva; Shabarova, Tanja; Grujčić, Vesna; Haber, Markus; Layoun, Paul; Hodoki, Yoshikuni; Nakano, Shin-ichi; Šimek, Karel; Ghai, Rohit (2020). A freshwater radiation of diplonemids. ArXiv.org 15209, Cornell University.

Andrei, Adrian-Stefan; Bulzu, Paul‐Adrian; Banciu, Horia Leonard (2020). Blossoms of Rot: Microbial Life in Saline Organic-Rich Sediments. In: Seckbach, Josef; Stan-Lotter, Helga. Extremophiles as Astrobiological Models. Scrivener Publishing LLC: Wiley-Blackwell Publishing, Inc., 45-82.

Mecchia, Martin A; Rövekamp, Moritz; Giraldo-Fonseca, Alejandro; Meier, Dario; Gadient, Philippe; Bowman, John L; Grossniklaus, Ueli (2020). Characterization of the single FERONIA homolog in Marchantia polymorpha reveals an ancestral role of CrRLK1L receptor kinases in regulating cell expansion and morphological integrity. bioRxiv 424085, Cold Spring Harbor Laboratory.

Deplazes-Zemp, Anna; Grossniklaus, Ueli; Lefort, François; Müller, Pie; Romeis, Jörg; Rüegsegger, Adrian; Schoenenberger, Nicola; Spehn, Eva (2020). Gene drives: benefits, risks, and possible applications. Swiss Academies Factsheet, 15(4):1-7.

Catena, Raúl; Özcan, Alaz; Kütt, Laura; Plüss, Alex; Schraml, Peter; Moch, Holger; Bodenmiller, Bernd (2020). Highly multiplexed molecular and cellular mapping of breast cancer tissue in three dimensions using mass tomography. bioRxiv 113571, Cold Spring Harbor Laboratory.

Teano, Gianluca; Concia, Lorenzo; Carron, Léopold; Wolff, Léa; Adamusová, Kateřina; Fojtová, Miloslava; Bourge, Michael; Kramdi, Amira; Colot, Vincent; Grossniklaus, Ueli; Bowler, Chris; Baroux, Célia; Carbone, Alessandra; Probst, Aline V; Procházková Schrumpfová, Petra; Fajkus, Jiří; Amiard, Simon; Grob, Stefan; Bourbousse, Clara; Barneche, Fredy (2020). Histone H1 protects telomeric repeats from H3K27me3 invasion in Arabidopsis. bioRxiv 402172, Cold Spring Harbor Laboratory.

Hernandez-Lagana, Elvira; Mosca, Gabriella; Sato, Ethel Mendocilla; Pires, Nuno; Frey, Anja; Giraldo-Fonseca, Alejandro; Grossniklaus, Ueli; Hamant, Olivier; Godin, Christophe; Boudaoud, Arezki; Grimanelli, Daniel; Autran, Daphné; Baroux, Célia (2020). Organ geometry channels cell fate in the Arabidopsis ovule primordium. bioRxiv 226670, Cold Spring Harbor Laboratory.

Lardi, Martina; Liu, Yilei; Hug, Sebastian; Bolzan de Campos, Samanta; Eberl, Leo; Pessi, Gabriella (2020). Paraburkholderia phymatum STM815 σ54 controls utilization of Dicarboxylates, motility, and T6SS-b expression. Nitrogen, 1(2):81-98.

Grossniklaus, Ueli; Messmer, Monika; Peter, Roland; Romeis, Jörg; Studer, Bruno (2020). Pflanzenzüchtung – von klassischer Kreuzung bis Genom-Editierung. Swiss Academies Factsheet, 15(3):1-5.

Simonini, Sara; Bemer, Marian; Bencivenga, Stefano; Gagliardini, Valeria; Pires, Nuno D; Desvoyes, Bénédicte; van der Graaff, Eric; Gutierrez, Crisanto; Grossniklaus, Ueli (2020). The Polycomb group protein MEDEA controls cell proliferation and embryonic patterning in Arabidopsis. bioRxiv 338707, Cold Spring Harbor Laboratory.

2019

Galindo‐Trigo, Sergio; Blanco‐Touriñán, Noel; DeFalco, Thomas A; Wells, Eloise S; Gray, Julie E; Zipfel, Cyril; Smith, Lisa M (2019). Cr RLK 1L receptor‐like kinases HERK 1 and ANJEA are female determinants of pollen tube reception. EMBO Reports:e48466.

Tsutsui, Hiroki; Yanagisawa, Naoki; Kawakatsu, Yaichi; Ikematsu, Shuka; Sawai, Yu; Tabata, Ryo; Arata, Hideyuki; Higashiyama, Tetsuya; Notaguchi, Michitaka (2019). Micrografting device for testing environmental conditions for grafting and systemic signaling in Arabidopsis. bioRxiv 885525, Cold Spring Harbor Laboratory.

Banerjee, Samiran; Schlaeppi, Klaus; van der Heijden, Marcel G A (2019). Reply to ‘Can we predict microbial keystones?’. Nature Reviews. Microbiology, 17(3):194.

Bergelson, Joy; Mittelstrass, Jana; Horton, Matthew W (2019). Characterizing both bacteria and fungi improves understanding of the Arabidopsis root microbiome. Scientific Reports, 9:24.

Wyder, Stefan; Raissig, Michael T; Grossniklaus, Ueli (2019). Consistent Reanalysis of Genome-wide Imprinting Studies in Plants Using Generalized Linear Models Increases Concordance across Datasets. Scientific Reports, 9(1):1320-..

Sendek, Agnieszka; Karakoç, Canan; Wagg, Cameron; Domínguez-Begines, Jara; do Couto, Gabriela Martucci; van der Heijden, Marcel G A; Naz, Ali Ahmad; Lochner, Alfred; Chatzinotas, Antonis; Klotz, Stefan; Gómez-Aparicio, Lorena; Eisenhauer, Nico (2019). Drought modulates interactions between arbuscular mycorrhizal fungal diversity and barley genotype diversity. Scientific Reports, 9(1):9650.

Wagg, Cameron; Schlaeppi, Klaus; Banerjee, Samiran; Kuramae, Eiko E; van der Heijden, Marcel G A (2019). Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning. Nature Communications, 10:4841.

Sathe, Santosh; Mathew, Anugraha; Agnoli, Kirsty; Eberl, Leo; Kümmerli, Rolf (2019). Genetic architecture constrains exploitation of siderophore cooperation in the bacterium Burkholderia cenocepacia. Evolution Letters, 3(6):610-622.

Kuon, Joel-E; Qi, Weihong; Schläpfer, Pascal; Hirsch-Hoffmann, Matthias; von Bieberstein, Philipp Rogalla; Patrignani, Andrea; Poveda, Lucy; Grob, Stefan; Keller, Miyako; Shimizu-Inatsugi, Rie; Grossniklaus, Ueli; Vanderschuren, Hervé; Gruissem, Wilhelm (2019). Haplotype-resolved genomes of geminivirus-resistant and geminivirus-susceptible African cassava cultivars. BMC Biology, 17(1):75.

Grob, Stefan; Grossniklaus, Ueli (2019). Invasive DNA elements modify the nuclear architecture of their insertion site by KNOT-linked silencing in Arabidopsis thaliana. Genome Biology, 20(1):120.

Rutowicz, Kinga; Lirski, Maciej; Mermaz, Benoît; Teano, Gianluca; Schubert, Jasmin; Mestiri, Imen; Kroteń, Magdalena A; Fabrice, Tohnyui Ndinyanka; Fritz, Simon; Grob, Stefan; Ringli, Christoph; Cherkezyan, Lusik; Barneche, Fredy; Jerzmanowski, Andrzej; Baroux, Célia (2019). Linker histones are fine-scale chromatin architects modulating developmental decisions in Arabidopsis. Genome Biology, 20:157.

Kavagutti, Vinicius S; Andrei, Adrian-Stefan; Mehrshad, Maliheh; Salcher, Michaela M; Ghai, Rohit (2019). Phage-centric ecological interactions in aquatic ecosystems revealed through ultra-deep metagenomics. Microbiome, 7:135.

Monat, Cécile; Padmarasu, Sudharsan; Lux, Thomas; Wicker, Thomas; Gundlach, Heidrun; Himmelbach, Axel; Ens, Jennifer; Li, Chengdao; Muehlbauer, Gary J; Schulman, Alan H; Waugh, Robbie; Braumann, Ilka; Pozniak, Curtis; Scholz, Uwe; Mayer, Klaus F X; Spannagl, Manuel; Stein, Nils; Mascher, Martin (2019). TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools. Genome Biology, 20:284.

Bourras, Salim; Kunz, Lukas; Xue, Minfeng; Praz, Coraline Rosalie; Müller, Marion Claudia; Kälin, Carol; Schläfli, Michael; Ackermann, Patrick; Flückiger, Simon; Parlange, Francis; Menardo, Fabrizio; Schaefer, Luisa Katharina; Ben-David, Roi; Roffler, Stefan; Oberhaensli, Simone; Widrig, Victoria; Lindner, Stefan; Isaksson, Jonatan; Wicker, Thomas; Yu, Dazhao; Keller, Beat (2019). The AvrPm3-Pm3 effector-NLR interactions control both race-specific resistance and host-specificity of cereal mildews on wheat. Nature Communications, 10(1):2292-2308.

Skinner, Colin; Gattinger, Andreas; Krauss, Maike; Krause, Hans-Martin; Mayer, Jochen; van der Heijden, Marcel G A; Mäder, Paul (2019). The impact of long-term organic farming on soil-derived greenhouse gas emissions. Scientific Reports, 9:1702.

Vogler, Hannes; Santos-Fernandez, Gorka; Mecchia, Martin A; Grossniklaus, Ueli (2019). To preserve or to destroy, that is the question: the role of the cell wall integrity pathway in pollen tube growth. Current Opinion in Plant Biology, 52:131-139.

Luther, Anatol; Urfer, Matthias; Zahn, Michael; Müller, Maik; Wang, Shuang-Yan; Mondal, Milon; Vitale, Alessandra; Hartmann, Jean-Baptiste; Sharpe, Timothy; Monte, Fabio Lo; Kocherla, Harsha; Cline, Elizabeth; Pessi, Gabriella; Rath, Parthasarathi; Modaresi, Seyed Majed; Chiquet, Petra; Stiegeler, Sarah; Verbree, Carolin; Remus, Tobias; Schmitt, Michel; Kolopp, Caroline; Westwood, Marie-Anne; Desjonquères, Nicolas; Brabet, Emile; Hell, Sophie; LePoupon, Karen; Vermeulen, Annie; Jaisson, Régis; Rithié, Virginie; Upert, Grégory; Lederer, A; Zbinden, P; Wach, A; Moehle, Kerstin; Zerbe, Katja; Locher, H H; Bernardini, Federico; Dale, G E; Eberl, Leo; Wollscheid, Bernd; Hiller, Sebastian; Robinson, J A; Obrecht, D (2019). Chimeric peptidomimetic antibiotics against Gram-negative bacteria. Nature, 576(7787):452-458.

Loaiza Puerta, Viviana; Six, Johan; Wittwer, Raphael; van der Heijden, Marcel; Pujol Pereira, Engil Isadora (2019). Comparable bacterial-mediated nitrogen supply and losses under organic reduced tillage and conventional intensive tillage. Soil Biology and Biochemistry, 95:103121.

Herzog, Chantal; Honegger, Adrian; Hegglin, Django; Wittwer, Raphaël; de Ferron, Anne; Verbruggen, Erik; Jeanneret, Philippe; Schloter, Michael; Banerjee, Samiran; van der Heijden, Marcel G A (2019). Crop yield, weed cover and ecosystem multifunctionality are not affected by the duration of organic management. Agriculture, Ecosystems & Environment, 284:106596.

Salcher, Michaela M; Schaefle, Daniel; Kaspar, Melissa; Neuenschwander, Stefan M; Ghai, Rohit (2019). Evolution in action: habitat transition from sediment to the pelagial leads to genome streamlining in Methylophilaceae. The ISME journal, 13(11):2764-2777.

Silva, Marisa O D; Pernthaler, Jakob (2019). Priming of microcystin degradation in carbon-amended membrane biofilm communities is promoted by oxygen-limited conditions. FEMS Microbiology Ecology, 95(11):157.

Sailer, Christian; Stöcklin, Jürg; Grossniklaus, Ueli (2019). Dynamics of apomictic and sexual reproduction during primary succession on a glacier forefield in the Swiss Alps. bioRxiv 807651, Cold Spring Harbor Laboratory.

Kartal, Önder; Schmid, Marc W; Grossniklaus, Ueli (2019). Cell Type-specific Genome Scans of DNA Methylation Diversity Indicate an Important Role for Transposable Elements. bioRxiv 801233, Cold Spring Harbor Laboratory.

O'Brien, Siobhán; Kümmerli, Rolf; Paterson, Steve; Winstanley, Craig; Brockhurst, Michael A (2019). Transposable temperate phages promote the evolution of divergent social strategies in Pseudomonas aeruginosa populations. Proceedings of the Royal Society of London, Series B: Biological Sciences, 286(1912):20191794.

Drinnenberg, Ines A; Berger, Frédéric; Elsässer, Simon J; Andersen, Peter R; Ausió, Juan; Bickmore, Wendy A; Blackwell, Alexander R; Erwin, Douglas H; Gahan, James M; Gaut, Brandon S; Harvey, Zachary H; Henikoff, Steven; Kao, Joyce Y; Kurdistani, Siavash K; Lemos, Bernardo; Levine, Mia T; Luger, Karolin; Malik, Harmit S; Martín-Durán, José M; Peichel, Catherine L; Renfree, Marilyn B; Rutowicz, Kinga; Sarkies, Peter; Schmitz, Robert J; Technau, Ulrich; Thornton, Joseph W; Warnecke, Tobias; Wolfe, Kenneth H (2019). EvoChromo: towards a synthesis of chromatin biology and evolution. Development, 146(19):dev178962.

Rezzoagli, Chiara; Granato, Elisa T; Kümmerli, Rolf (2019). In-vivo microscopy reveals the impact of Pseudomonas aeruginosa social interactions on host colonization. The ISME journal, 13(10):2403-2414.

Eckert, Ester M; Di Cesare, Andrea; Malki, Lala-Sakina; Villiger, Jörg; Pernthaler, Jakob; Callieri, Cristiana; Bertoni, Roberto; Corno, Gianluca (2019). Seasonality of the antibiotic resistance gene blaCTX-M in temperate Lake Maggiore. Hydrobiologia, 843(1):143-153.

Süssenbacher, Iris; Menghini, Damian; Scherzer, Gerhard; Salinger, Kathrin; Erhart, Theresia; Moser, Simone; Vergeiner, Clemens; Hörtensteiner, Stefan; Kräutler, Bernhard (2019). Cryptic chlorophyll breakdown in non-senescent green Arabidopsis thaliana leaves. Photosynthesis Research, 142(1):69-85.

Xie, Zuokun; Wu, Shengdong; Chen, Junyi; Zhu, Xiaoyu; Zhou, Xin; Hörtensteiner, Stefan; Ren, Guodong; Kuai, Benke (2019). The C-terminal cysteine-rich motif of NYE1/SGR1 is indispensable for its function in chlorophyll degradation in Arabidopsis. Plant molecular biology, 101(3):257-268.

Herger, Aline; Dünser, Kai; Kleine-Vehn, Jürgen; Ringli, Christoph (2019). Leucine-Rich Repeat Extensin Proteins and Their Role in Cell Wall Sensing. Current Biology, 29(17):R851-R858.

Šimek, Karel; Grujčić, Vesna; Nedoma, Jiří; Jezberová, Jitka; Šorf, Michal; Matoušů, Anna; Pechar, Libor; Posch, Thomas; Bruni, Estelle P; Vrba, Jaroslav (2019). Microbial food webs in hypertrophic fishponds: Omnivorous ciliate taxa are major protistan bacterivores. Limnology and Oceanography, 64(5):2295-2309.

De Vrieze, Mout; Gloor, Ramona; Massana Codina, Josep; Torriani, Stefano; Gindro, Katia; L'Haridon, Floriane; Bailly, Aurélien; Weisskopf, Laure (2019). Biocontrol Activity of Three Pseudomonas in a Newly Assembled Collection of Phytophthora infestans Isolates. Phytopathology, 109(9):1555-1565.

Reimer, Marie; Ringselle, Björn; Bergkvist, Göran; Westaway, Sally; Wittwer, Raphaël; Baresel, Jörg Peter; van der Heijden, Marcel G A; Mangerud, Kjell; Finckh, Maria R; Brandsæter, Lars Olav (2019). Interactive Effects of Subsidiary Crops and Weed Pressure in the Transition Period to Non-Inversion Tillage, A Case Study of Six Sites Across Northern and Central Europe. Agronomy, 9(9):495.

Yu, Dade; Wildhagen, Henning; Tylewicz, Szymon; Miskolczi, Pal C; Bhalerao, Rishikesh P; Polle, Andrea (2019). Abscisic acid signalling mediates biomass trade‐off and allocation in poplar. New Phytologist, 223(3):1192-1203.

Xiao, Yu; Stegmann, Martin; Han, Zhifu; DeFalco, Thomas A; Parys, Katarzyna; Xu, Li; Belkhadir, Youssef; Zipfel, Cyril; Chai, Jijie (2019). Mechanisms of RALF peptide perception by a heterotypic receptor complex. Nature, 572(7768):270-274.

Tsutsui, Hiroki; Sato, Yoshikatsu; Susaki, Daichi; Higashiyama, Tetsuya (2019). Microtubule depletion domain 1 localizes at the boundary between female gametes in Arabidopsis thaliana. Molecular Reproduction and Development, 86(8):925.

Amorim-Silva, Vitor; Garcia-Moreno, Alvaro; Castillo, Araceli G; Lakhssassi, Naoufal; Del Valle, Alicia Esteban; Perez-Sancho, Jessica; Li, Yansha; Pose, David; Perez-Rodriguez, Josefa; Lin, Jinxing; Valpuesta, Victoriano; Borsani, Omar; Zipfel, Cyril; Macho, Alberto P; Botella, Miguel A (2019). TTL proteins scaffold brassinosteroid signaling components at the plasma membrane to optimize signal transduction in Arabidopsis. Plant Cell, 31(8):1807-1828.

Gimeno, Alejandro; Sohlberg, Elina; Pakula, Tiina; Limnell, Jenni; Keller, Beat; Laitila, Arja; Vogelgsang, Susanne (2019). TaqMan qPCR for Quantification of Clonostachys rosea Used as a Biological Control Agent Against Fusarium graminearum. Frontiers in Microbiology, 10:1627.

Burri, Jan T; Saikia, Eashan; Läubli, Nino F; Vogler, Hannes; Wittel, Falk K; Rüggeberg, Markus; Herrmann, Hans J; Burgert, Ingo; Nelson, Bradley J; Grossniklaus, Ueli (2019). The mechanical basis for snapping of the Venus flytrap, Darwin’s ‘most wonderful plant in the world’. BioRXiv 697797, Cold Spring Harbor Laboratory.

Wong, Jaslyn E M M; Nadzieja, Marcin; Madsen, Lene H; Bücherl, Christoph A; Dam, Svend; Sandal, Niels N; Couto, Daniel; Derbyshire, Paul; Uldum-Berentsen, Mette; Schroeder, Sina; Schwämmle, Veit; Nogueira, Fábio C S; Asmussen, Mette H; Thirup, Søren; Radutoiu, Simona; Blaise, Mickaël; Andersen, Kasper R; Menke, Frank L H; Zipfel, Cyril; Stougaard, Jens (2019). A Lotus japonicus cytoplasmic kinase connects Nod factor perception by the NFR5 LysM receptor to nodulation. Proceedings of the National Academy of Sciences of the United States of America, 116(28):14339-14348.

Moussu, Steven; Broyart, Caroline; Santos-Fernandez, Gorka; Augustin, Sebastian; Wehrle, Sarah; Grossniklaus, Ueli; Santiago, Julia (2019). Structural basis for recognition of RALF peptides by LRX proteins during pollen tube growth. bioRxiv 695874, Cold Spring Harbor Laboratory.

Banerjee, Samiran; Walder, Florian; Büchi, Lucie; Meyer, Marcel; Held, Alain Y; Gattinger, Andreas; Keller, Thomas; Charles, Raphael; van der Heijden, Marcel G A (2019). Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots. The ISME journal, 13(7):1722-1736.

Bulzu, Paul-Adrian; Andrei, Adrian-Stefan; Salcher, Michaela M; Mehrshad, Maliheh; Inoue, Keiichi; Kandori, Hideki; Beja, Oded; Ghai, Rohit; Banciu, Horia L (2019). Casting light on Asgardarchaeota metabolism in a sunlit microoxic niche. Nature Microbiology, 4(7):1129-1137.

Fernández, Iván; Cosme, Marco; Stringlis, Ioannis A; Yu, Ke; de Jonge, Ronnie; van Wees, Saskia C M; Pozo, Maria J; Pieterse, Corné M J; van der Heijden, Marcel G A (2019). Molecular dialogue between arbuscular mycorrhizal fungi and the nonhost plant Arabidopsis thaliana switches from initial detection to antagonism. New Phytologist, 223(2):867-881.

Díaz, Mariana; Pečinková, Petra; Nowicka, Anna; Baroux, Célia; Sakamoto, Takuya; Gandha, Priscilla Yuliani; Jeřábková, Hana; Matsunaga, Sachihiro; Grossniklaus, Ueli; Pecinka, Ales (2019). The SMC5/6 Complex Subunit NSE4A Is Involved in DNA Damage Repair and Seed Development. Plant Cell, 31(7):1579-1597.

Callieri, Cristiana; Slabakova, Violeta; Dzhembekova, Nina; Slabakova, Nataliya; Peneva, Elisaveta; Cabello-Yeves, Pedro J; Di Cesare, Andrea; Eckert, Ester M; Bertoni, Roberto; Corno, Gianluca; Salcher, Michaela M; Kamburska, Lyudmila; Bertoni, Filippo; Moncheva, Snejana (2019). The mesopelagic anoxic Black Sea as an unexpected habitat for Synechococcus challenges our understanding of global “deep red fluorescence”. The ISME journal, 13(7):1676-1687.

Miskolczi, Pál; Singh, Rajesh Kumar; Tylewicz, Szymon; Azeez, Abdul; Maurya, Jay P; Tarkowská, Danuše; Novák, Ondřej; Jonsson, Kristoffer; Bhalerao, Rishikesh P (2019). Long-range mobile signals mediate seasonal control of shoot growth. Proceedings of the National Academy of Sciences of the United States of America, 116(22):10852-10857.

Steinbach, Yvonne (2019). The Arabidopsis thaliana CONSTANS-LIKE 4 (COL4) – A Modulator of Flowering Time. Frontiers in Plant Science, 10:651.

Wuest, Samuel E; Pires, Nuno D; Luo, Shan; Vasseur, Francois; Messier, Julie; Grossniklaus, Ueli; Niklaus, Pascal A (2019). Increasing plant group productivity through latent genetic variation for cooperation. BioRxiv 641449, Cold Spring Harbor Laboratory.

Kierzkowski, Daniel; Runions, Adam; Vuolo, Francesco; Strauss, Sören; Lymbouridou, Rena; Routier-Kierzkowska, Anne-Lise; Wilson-Sánchez, David; Jenke, Hannah; Galinha, Carla; Mosca, Gabriella; Zhang, Zhongjuan; Canales, Claudia; Dello Ioio, Raffaele; Huijser, Peter; Smith, Richard S; Tsiantis, Miltos (2019). A Growth-Based Framework for Leaf Shape Development and Diversity. Cell, 177(6):1405-1418.e17.

Wechsler, Tobias; Kümmerli, Rolf; Dobay, Akos (2019). Understanding policing as a mechanism of cheater control in cooperating bacteria. Journal of Evolutionary Biology, 32(5):412-424.

Lammertz, Meltem; Kuhn, Hannah; Pfeilmeier, Sebastian; Malone, Jacob; Zipfel, Cyril; Kwaaitaal, Mark; Lin, Nai-Chun; Kvitko, Brian H; Panstruga, Ralph (2019). Widely Conserved Attenuation of Plant MAMP-Induced Calcium Influx by Bacteria Depends on Multiple Virulence Factors and May Involve Desensitization of Host Pattern Recognition Receptors. Molecular Plant-Microbe Interactions, 32(5):608-621.

Silva, Marisa O D; Desmond, Peter; Derlon, Nicolas; Morgenroth, Eberhard; Pernthaler, Jakob (2019). Source Community and Assembly Processes Affect the Efficiency of Microbial Microcystin Degradation on Drinking Water Filtration Membranes. Frontiers in Microbiology, 10:843.

Schaufelberger, Myriam; Galbier, Florian; Herger, Aline; de Brito Francisco, Rita; Roffler, Stefan; Clement, Gilles; Diet, Anouck; Hörtensteiner, Stefan; Wicker, Thomas; Ringli, Christoph (2019). Mutations in the Arabidopsis ROL17/isopropylmalate synthase 1 locus alter amino acid content, modify the TOR network, and suppress the root hair cell development mutant lrx1. Journal of Experimental Botany, 70(8):2313-2323.

Brukhin, Vladimir; Osadtchiy, Jaroslaw V; Florez-Rueda, Ana Marcela; Smetanin, Dmitry; Bakin, Evgeny; Nobre, Margarida Sofia; Grossniklaus, Ueli (2019). The Boechera Genus as a Resource for Apomixis Research. Frontiers in Plant Science:10:392.

Burri, Jan T; Vogler, Hannes; Munglani, Gautam; Laubli, Nino F; Grossniklaus, Ueli; Nelson, Bradley J (2019). A Microrobotic System for Simultaneous Measurement of Turgor Pressure and Cell-Wall Elasticity of Individual Growing Plant Cells. IEEE Robotics and Automation Letters, 4(2):641-646.

Dünser, Kai; Gupta, Shibu; Herger, Aline; Feraru, Mugurel I; Ringli, Christoph; Kleine‐Vehn, Jürgen (2019). Extracellular matrix sensing by FERONIA and Leucine‐Rich Repeat Extensins controls vacuolar expansion during cellular elongation in Arabidopsis thaliana. EMBO Journal Online, 38(7):1-12.

Schiessl, Konstanze T; Ross‐Gillespie, Adin; Cornforth, Daniel M; Weigert, Michael; Bigosch, Colette; Brown, Sam P; Ackermann, Martin; Kümmerli, Rolf (2019). Individual‐ versus group‐optimality in the production of secreted bacterial compounds. Evolution, 73(4):675-688.

Andrei, Adrian-Stefan; Salcher, Michaela M; Mehrshad, Maliheh; Rychtecký, Pavel; Znachor, Petr; Ghai, Rohit (2019). Niche-directed evolution modulates genome architecture in freshwater Planctomycetes. The ISME journal, 13(4):1056-1071.

Brulé, Daphnée; Villano, Clizia; Davies, Laura J; Trdá, Lucie; Claverie, Justine; Héloir, Marie-Claire; Chiltz, Annick; Adrian, Marielle; Darblade, Benoît; Tornero, Pablo; Stransfeld, Lena; Boutrot, Freddy; Zipfel, Cyril; Dry, Ian B; Poinssot, Benoit (2019). The grapevine (Vitis vinifera) LysM receptor kinases VvLYK1-1 and VvLYK1-2 mediate chitooligosaccharide-triggered immunity. Plant Biotechnology Journal, 17(4):812-825.

Straub, Hervé; Bigger, Claudio M; Valentin, Jules; Abt, Dominik; Qin, Xiao-Hua; Eberl, Leo; Maniura-Weber, Katharina; Ren, Qun (2019). Bacterial Adhesion on Soft Materials: Passive Physicochemical Interactions or Active Bacterial Mechanosensing? Advanced Healthcare Materials, 8(8):e1801323.

Colombi, Tino; Walder, Florian; Büchi, Lucie; Sommer, Marlies; Liu, Kexing; Six, Johan; van der Heijden, Marcel G A; Charles, Raphaël; Keller, Thomas (2019). On-farm study reveals positive relationship between gas transport capacity and organic carbon content in arable soil. SOIL, 5(1):91-105.

Läubli, Nino F; Shamsudhin, Naveen; Vogler, Hannes; Munglani, Gautam; Grossniklaus, Ueli; Ahmed, Daniel; Nelson, Bradley J (2019). 3D Manipulation and Imaging of Plant Cells using Acoustically Activated Microbubbles. Small Methods, 3(3):1800527.

Müller, Marion C; Praz, Coraline R; Sotiropoulos, Alexandros G; Menardo, Fabrizio; Kunz, Lukas; Schudel, Seraina; Oberhänsli, Simone; Poretti, Manuel; Wehrli, Andreas; Bourras, Salim; Keller, Beat; Wicker, Thomas (2019). A chromosome-scale genome assembly reveals a highly dynamic effector repertoire of wheat powdery mildew. New Phytologist, 221(4):2176-2189.

Wan, Wei‐Lin; Zhang, Lisha; Pruitt, Rory; Zaidem, Maricris; Brugman, Rik; Ma, Xiyu; Krol, Elzbieta; Perraki, Artemis; Kilian, Joachim; Grossmann, Guido; Stahl, Mark; Shan, Libo; Zipfel, Cyril; van Kan, Jan A L; Hedrich, Rainer; Weigel, Detlef; Gust, Andrea A; Nürnberger, Thorsten (2019). Comparing Arabidopsis receptor kinase and receptor protein‐mediated immune signaling reveals BIK1‐dependent differences. New Phytologist, 221(4):2080-2095.

Sánchez-Martín, Javier; Keller, Beat (2019). Contribution of recent technological advances to future resistance breeding. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 132(3):713-732.

Bender, S Franz; Schlaeppi, Klaus; Held, Alain; Van der Heijden, Marcel G A (2019). Establishment success and crop growth effects of an arbuscular mycorrhizal fungus inoculated into Swiss corn fields. Agriculture, Ecosystems & Environment, 273:13-24.

Pfeilmeier, Sebastian; George, Jeoffrey; Morel, Arry; Roy, Sonali; Smoker, Matthew; Stransfeld, Lena; Downie, J Allan; Peeters, Nemo; Malone, Jacob G; Zipfel, Cyril (2019). Expression of the Arabidopsis thaliana immune receptor EFR in Medicago truncatula reduces infection by a root pathogenic bacterium, but not nitrogen‐fixing rhizobial symbiosis. Plant Biotechnology Journal, 17(3):569-579.

Chung, Yuhee; Zhu, Yang; Wu, Miin-Feng; Simonini, Sara; Kuhn, Andre; Armenta-Medina, Alma; Jin, Run; Østergaard, Lars; Gillmor, C Stewart; Wagner, Doris (2019). Auxin Response Factors promote organogenesis by chromatin-mediated repression of the pluripotency gene SHOOTMERISTEMLESS. Nature Communications, 10(1):886.

Saur, Isabel M L; Bauer, Saskia; Kracher, Barbara; Lu, Xunli; Franzeskakis, Lamprinos; Müller, Marion C; Sabelleck, Bjo ̈rn; Kümmel, Florian; Panstruga, Ralph; Maekawa, Takaki; Schulze-Lefert, Paul (2019). Multiple pairs of allelic MLA immune receptor-powdery mildew AVRA effectors argue for a direct recognition mechanism. eLife, 8:e44471.

Pitsch, Gianna; Bruni, Estelle Patricia; Forster, Dominik; Qu, Zhishuai; Sonntag, Bettina; Stoeck, Thorsten; Posch, Thomas (2019). Seasonality of Planktonic Freshwater Ciliates: Are Analyses Based on V9 Regions of the 18S rRNA Gene Correlated With Morphospecies Counts? Frontiers in Microbiology, 10:248.

Seitz, Steffen; Goebes, Philipp; Puerta, Viviana Loaiza; Pereira, Engil Isadora Pujol; Wittwer, Raphaël; Six, Johan; van der Heijden, Marcel G A; Scholten, Thomas (2019). Conservation tillage and organic farming reduce soil erosion. Agronomy for Sustainable Development, 39(1):4.

Koller, Teresa; Brunner, Susanne; Herren, Gerhard; Sanchez-Martin, Javier; Hurni, Severine; Keller, Beat (2019). Field grown transgenic Pm3e wheat lines show powdery mildew resistance and no fitness costs associated with high transgene expression. Transgenic research, 28(1):9-20.

Milner, Sara G; Jost, Matthias; Taketa, Shin; et al; Herren, Gerhard; Müller, Thomas; Krattinger, Simon G; Keller, Beat (2019). Genebank genomics highlights the diversity of a global barley collection. Nature Genetics, 51(2):319-326.

Kramer, Jos; Meunier, Joël (2019). The other facets of family life and their role in the evolution of animal sociality. Biological Reviews of the Cambridge Philosophical Society, 94(1):199-215.

Spiewak, Helena L; Shastri, Sravanthi; Zhang, Lili; Schwager, Stephan; Eberl, Leo; Vergunst, Annette C; Thomas, Mark S (2019). Burkholderia cenocepacia utilizes a type VI secretion system for bacterial competition. MicrobiologyOpen:e774.

Hsiao, Chien-Chi; Sieber, Simon; Georgiou, Antri; Bailly, Aurélien; Emmanouilidou, Despina; Carlier, Aurélien; Eberl, Leo; Gademann, Karl (2019). Synthesis and Biological Evaluation of the Novel Growth Inhibitor Streptol Glucoside, Isolated from an Obligate Plant Symbiont. Chemistry - A European Journal, 25(7):1722-1726.

Hörtensteiner, Stefan; Hauenstein, Mareike; Kräutler, Bernhard (2019). Chlorophyll breakdown—Regulation, biochemistry and phyllobilins as its products. In: Grimm, Bernhard. Metabolism, Structure and Function of Plant Tetrapyrroles: Introduction, Microbial and Eukaryotic Chlorophyll Synthesis and Catabolism. London: Elsevier, 213-271.

Schöneberg, T; Kibler, K; Wettstein, F E; Bucheli, T D; Forrer, H R; Musa, T; Mascher, F; Bertossa, M; Keller, B; Vogelgsang, S (2019). Influence of temperature, humidity duration and growth stage on the infection and mycotoxin production by Fusarium langsethiae and Fusarium poae in oats. Plant Pathology Journal, 68(1):173-184.

Bodenhausen, Natacha; Somerville, Vincent; Desirò, Alessandro; Walser, Jean-Claude; Borghi, Lorenzo; van der Heijden, Marcel G A; Schlaeppi, Klaus (2019). Petunia- and Arabidopsis-Specific Root Microbiota Responses to Phosphate Supplementation. Phytobiomes Journal, 3(2):112-124.

Dumur, Tao; Duncan, Susan; Graumann, Katja; Desset, Sophie; Randall, Ricardo S; Scheid, Ortrun Mittelsten; Prodanov, Dimiter; Tatout, Christophe; Baroux, Célia (2019). Probing the 3D architecture of the plant nucleus with microscopy approaches: challenges and solutions. Nucleus, 10(1):181-212.

Baroux, Célia; Grossniklaus, Ueli (2019). Seeds—An evolutionary innovation underlying reproductive success in flowering plants. In: Grossniklaus, Ueli. Plant Development and Evolution. Amsterdam: Academic Press, 605-642.

Zélé, Flore; Santos-Matos, Gonçalo; Figueiredo, Alexandre R T; Eira, Cátia; Pinto, Catarina; Laurentino, Telma G; Sucena, Élio; Magalhães, Sara (2019). Spider mites escape bacterial infection by avoiding contaminated food. Oecologia, 189(1):111-122.

Toyofuku, Masanori; Nomura, Nobuhiko; Eberl, Leo (2019). Types and origins of bacterial membrane vesicles. Nature Reviews. Microbiology, 17(1):13-24.

Fernández, Noemí; Cabrera, Juan J; Varadarajan, Adithi R; Lutz, Stefanie; Ledermann, Raphael; Roschitzki, Bernd; Eberl, Leo; Bedmar, Eulogio J; Fischer, Hans-Martin; Pessi, Gabriella; Ahrens, Christian H; Mesa, Socorro (2019). An Integrated Systems Approach Unveils New Aspects of Microoxia-Mediated Regulation in Bradyrhizobium diazoefficiens. Frontiers in Microbiology, 10:924.

Gupta, Shibu. Analysis of LRXs an their downstream components in cell growth regulation in Arabidopsis thaliana. 2019, University of Zurich, Faculty of Science.

Bigger, Claudio Manuel. Bacterial Adhesion on Soft Materials: Passive Physicochemical Interactions or Active Bacterial Mechanosensing? 2019, University of Zurich, Faculty of Medicine.

Sheng, Song. Chlorophyll breakdown : characterization of vacuolar chlorophyll catabolite transport. 2019, University of Zurich, Faculty of Science.

Hauenstein, Mareike Luca. Chlorophyll breakdown: side chain modifications of chlorophyll catabolites. 2019, University of Zurich, Faculty of Science.

Pitsch, Gianna. Ciliates in freshwater ecosystems : insights from morphological and molecular approaches. 2019, University of Zurich, Faculty of Science.

Florez-Rueda, Ana Marcela; Fiscalini, Flurin; Roth, Morgane; Grossniklaus, Ueli; Städler, Thomas (2019). Endosperm and seed transcriptomes reveal possible roles for small RNA pathways in wild tomato hybrid seed failure. bioRxiv 884387, Cold Spring Harbor Laboratory.

Simonini, Sara; Østergaard, Lars (2019). Female reproductive organ formation: A multitasking endeavor. Current Topics in Developmental Biology, 131:337-371.

Praz, Coraline Rosalie. Genetic, genomic and transcriptomic analysis of the cereal - powdery mildew pathosystem. 2019, University of Zurich, Faculty of Science.

Mannweiler, Olga. Mechanisms of competition and genome defense in Burkholderia cenocepacia H111. 2019, University of Zurich, Faculty of Science.

Kadota, Yasuhiro; Liebrand, Thomas W H; Goto, Yukihisa; Sklenar, Jan; Derbyshire, Paul; Menke, Frank L H; Torres, Miguel-Angel; Molina, Antonio; Zipfel, Cyril; Coaker, Gitta; Shirasu, Ken (2019). Quantitative phosphoproteomic analysis reveals common regulatory mechanisms between effector- and PAMP-triggered immunity in plants. New Phytologist, 221:2160-2175.

Moles, Tommaso Michele; de Brito Francisco, Rita; Mariotti, Lorenzo; Pompeiano, Antonio; Lupini, Antonio; Incrocci, Luca; Carmassi, Giulia; Scartazza, Andrea; Pistelli, Laura; Guglielminetti, Lorenzo; Pardossi, Alberto; Sunseri, Francesco; Hörtensteiner, Stefan; Santelia, Diana (2019). Salinity in Autumn-Winter Season and Fruit Quality of Tomato Landraces. Frontiers in Plant Science, 10:1078.

Calderón, Claudia E; Tienda, Sandra; Heredia-Ponce, Zaira; Arrebola, Eva; Cárcamo-Oyarce, Gerardo; Eberl, Leo; Cazorla, Francisco M (2019). The Compound 2-Hexyl, 5-Propyl Resorcinol Has a Key Role in Biofilm Formation by the Biocontrol Rhizobacterium Pseudomonas chlororaphis PCL1606. Frontiers in Microbiology, 10:396.

Thalmann, Matthias; Coiro, Mario; Meier, Tiago; Wicker, Thomas; Zeeman, Samuel C; Santelia, Diana (2019). The evolution of functional complexity within the β-amylase gene family in land plants. BMC Evolutionary Biology:19:66.

2018

Singh, Rajesh Kumar; Maurya, Jay P; Azeez, Abdul; Miskolczi, Pal; Tylewicz, Szymon; Stojkovič, Katja; Delhomme, Nicolas; Busov, Victor; Bhalerao, Rishikesh P (2018). A genetic network mediating the control of bud break in hybrid aspen. Nature Communications, 9:4173.

Knapp, Samuel; van der Heijden, Marcel G A (2018). A global meta-analysis of yield stability in organic and conservation agriculture. Nature Communications, 9:3632.

Wuest, Samuel E; Niklaus, Pascal A (2018). A plant biodiversity effect resolved to a single chromosomal region. Nature Ecology and Evolution, 2(12):1933-1939.

Kirioukhova, Olga; Shah, Jubin N; Larsen, Danaé S; Tayyab, Muhammad; Mueller, Nora E; Govind, Geetha; Baroux, Célia; Federer, Michael; Gheyselinck, Jacqueline; Barrell, Philippa J; Ma, Hong; Sprunck, Stefanie; Huettel, Bruno; Wallace, Helen; Grossniklaus, Ueli; Johnston, Amal J (2018). Aberrant imprinting may underlie evolution of parthenogenesis. Scientific Reports, 8:10626.

Bourras, Salim; Praz, Coraline R; Spanu, Pietro D; Keller, Beat (2018). Cereal powdery mildew effectors: a complex toolbox for an obligate pathogen. Current Opinion in Microbiology, 46:26-33.

Thind, Anupriya Kaur; Wicker, Thomas; Müller, Thomas; Ackermann, Patrick M; Steuernagel, Burkhard; Wulff, Brande B H; Spannagl, Manuel; Twardziok, Sven O; Felder, Marius; Lux, Thomas; Mayer, Klaus F X; Keller, Beat; Krattinger, Simon G (2018). Chromosome-scale comparative sequence analysis unravels molecular mechanisms of genome dynamics between two wheat cultivars. Genome Biology, 19:104.

Li, B; Förster, C; Robert, C A M; Züst, T; Hu, L; Machado, R A R; Berset, J-D; Handrick, V; Knauer, T; Hensel, G; Chen, W; Kumlehn, J; Yang, P; Keller, B; Gershenzon, J; Jander, G; Köllner, T G; Erb, M (2018). Convergent evolution of a metabolic switch between aphid and caterpillar resistance in cereals. Science Advances, 4(12):eaat6797.

Schmid, Marc W; Giraldo-Fonseca, Alejandro; Rövekamp, Moritz; Smetanin, Dmitry; Bowman, John L; Grossniklaus, Ueli (2018). Extensive epigenetic reprogramming during the life cycle of Marchantia polymorpha. Genome Biology, 19(1):9-..

Di Cesare, Andrea; Cabello-Yeves, Pedro J; Chrismas, Nathan A M; Sánchez-Baracaldo, Patricia; Salcher, Michaela M; Callieri, Cristiana (2018). Genome analysis of the freshwater planktonic Vulcanococcus limneticus sp. nov. reveals horizontal transfer of nitrogenase operon and alternative pathways of nitrogen utilization. BMC Genomics, 19(1):259.

Mehrshad, Maliheh; Salcher, Michaela M; Okazaki, Yusuke; Nakano, Shin-ichi; Šimek, Karel; Andrei, Adrian-Stefan; Ghai, Rohit (2018). Hidden in plain sight—highly abundant and diverse planktonic freshwater Chloroflexi. Microbiome, 6(1):176.

Sirová, Dagmara; Bárta, Jiří; Šimek, Karel; Posch, Thomas; Pech, Jiří; Stone, James; Borovec, Jakub; Adamec, Lubomír; Vrba, Jaroslav (2018). Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant. Microbiome, 6(1):225.

Granato, Elisa T; Ziegenhain, Christoph; Marvig, Rasmus L; Kümmerli, Rolf (2018). Low spatial structure and selection against secreted virulence factors attenuates pathogenicity in Pseudomonas aeruginosa. The ISME journal, 12(12):2907-2918.

Paape, Timothy; Briskine, Roman V; Halstead-Nussloch, Gwyneth; Lischer, Heidi E L; Shimizu-Inatsugi, Rie; Hatakeyama, Masaomi; Tanaka, Kenta; Nishiyama, Tomoaki; Sabirov, Renat; Sese, Jun; Shimizu, Kentaro K (2018). Patterns of polymorphism and selection in the subgenomes of the allopolyploid Arabidopsis kamchatica. Nature Communications, 9:3909.

Kunwar, Sanju; Iriarte, Fanny; Fan, Qiurong; da Silva, Eduardo Evaristo; Ritchie, Laura; Nguyen, Nghi Song; Freeman, Joshua H; Stall, Robert E; Jones, Jeffrey B; Minsavage, Gerald V; Colee, James; Scott, Jay W; Vallad, Gary E; Zipfel, Cyril; Horvath, Diana; Westwood, Jack; Hutton, Samuel F; Paret, Mathews L (2018). Transgenic Expression of EFR and Bs2 Genes for Field Management of Bacterial Wilt and Bacterial Spot of Tomato. Phytopathology, 108(12):1402-1411.

Gomes, Margarida C; Tasrini, Yara; Subramoni, Sujatha; Agnoli, Kirsty; Feliciano, Joana R; Eberl, Leo; Sokol, Pamela; O'Callaghan, David; Vergunst, Annette C (2018). The afc antifungal activity cluster, which is under tight regulatory control of ShvR, is essential for transition from intracellular persistence of Burkholderia cenocepacia to acute pro-inflammatory infection. PLoS Pathogens, 14(12):e1007473.

Deppe, Johannes P; Rabbat, Ritta; Hörtensteiner, Stefan; Keller, Beat; Martinoia, Enrico; Lopéz-Marqués, Rosa L (2018). The wheat ABC transporter Lr34 modifies the lipid environment at the plasma membrane. Journal of Biological Chemistry, 293(48):18667-18679.

Okazaki, Yusuke; Salcher, Michaela M; Callieri, Cristiana; Nakano, Shin-ichi (2018). The Broad Habitat Spectrum of the CL500-11 Lineage (Phylum Chloroflexi), a Dominant Bacterioplankton in Oxygenated Hypolimnia of Deep Freshwater Lakes. Frontiers in Microbiology, 9:2891.

Hörtensteiner, Stefan (2018). Intraorganellar Enzyme Partitioning: A Novel Layer of Chlorophyll Biosynthesis Regulation. Plant & Cell Physiology, 59(11):2167-2168.

Neuenschwander, Stefan M; Ghai, Rohit; Pernthaler, Jakob; Salcher, Michaela M (2018). Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria. The ISME journal, 12:185-198.

Mozgova, Iva; Alexandre, Cristina; Steinbach, Yvonne; Derkacheva, Maria; Schäfer, Eberhard; Gruissem, Wilhelm (2018). A tribute to Lars Hennig (1970–2018). Journal of Experimental Botany, 69(21):4989-4990.

Alfreider, Albin; Grimus, Victoria; Luger, Martin; Ekblad, Anja; Salcher, Michaela M; Summerer, Monika (2018). Autotrophic carbon fixation strategies used by nitrifying prokaryotes in freshwater lakes. FEMS Microbiology Ecology, 94(10):fiy163.

Sathe, Santosh; Nanjundiah, Vidyanand (2018). Complex interactions underpin social behaviour in Dictyostelium giganteum. Behavioral Ecology and Sociobiology:72:167.

Butaitė, Elena; Kramer, Jos; Wyder, Stefan; Kümmerli, Rolf (2018). Environmental determinants of pyoverdine production, exploitation and competition in natural Pseudomonas communities. Environmental Microbiology, 20(10):3629-3642.

Singh, Simrat Pal; Hurni, Severine; Ruinelli, Michela; Brunner, Susanne; Sanchez-Martin, Javier; Krukowski, Patricia; Peditto, David; Buchmann, Gabriele; Zbinden, Helen; Keller, Beat (2018). Evolutionary divergence of the rye Pm17 and Pm8 resistance genes reveals ancient diversity. Plant molecular biology, 98(3):249-260.

Burri, Jan T; Vogler, Hannes; Läubli, Nino F; Hu, Chengzhi; Grossniklaus, Ueli; Nelson, Bradley J (2018). Feeling the force: how pollen tubes deal with obstacles. New Phytologist, 220(1):187-195.

Bourgeois, Yann; Stritt, Christoph; Walser, Jean-Claude; Gordon, Sean P; Vogel, John P; Roulin, Anne C (2018). Genome-wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon. The Plant Journal, 96(2):438-451.

Das, Aditi; Christ, Bastien; Hörtensteiner, Stefan (2018). Characterization of the pheophorbide a oxygenase/phyllobilin pathway of chlorophyll breakdown in grasses. Planta, 248(4):875-892.

Simonini, Sara; Mas, Philippe J; Mas, Caroline M V S; Østergaard, Lars; Hart, Darren J (2018). Auxin sensing is a property of an unstructured domain in the Auxin Response Factor ETTIN of Arabidopsis thaliana. Scientific Reports, 8(1):13563.

Rezzoagli, Chiara; Wilson, David; Weigert, Michael; Wyder, Stefan; Kümmerli, Rolf (2018). Probing the evolutionary robustness of two repurposed drugs targeting iron uptake in Pseudomonas aeruginosa. Evolution, Medicine, and Public Health, 6:246-259.

Gruissem, Wilhelm; Keller, Beat. Auch die Schweizer Bauern sind auf Fortschritt angewiesen. In: Neue Zürcher Zeitung am Sonntag, 8 September 2018, 1.

Yang, Ping; Praz, Coraline; Li, Beibei; Singla, Jyoti; Robert, Christelle A M; Kessel, Bettina; Scheuermann, Daniela; Lüthi, Linda; Ouzunova, Milena; Erb, Matthias; Krattinger, Simon G; Keller, Beat (2018). Fungal resistance mediated by maize wall‐associated kinase Zm WAK‐RLK1 correlates with reduced benzoxazinoid content. New Phytologist, 221(2):976-987.

Perraki, Artemis; DeFalco, Thomas A; Derbyshire, Paul; Avila, Julian; Séré, David; Sklenar, Jan; Qi, Xingyun; Stransfeld, Lena; Schwessinger, Benjamin; Kadota, Yasuhiro; Macho, Alberto P; Jiang, Shushu; Couto, Daniel; Torii, Keiko U; Menke, Frank L H; Zipfel, Cyril (2018). Phosphocode-dependent functional dichotomy of a common co-receptor in plant signalling. Nature, 561:248-252.

Roth, Morgane; Florez-Rueda, Ana M; Paris, Margot; Städler, Thomas (2018). Wild tomato endosperm transcriptomes reveal common roles of genomic imprinting in both nuclear and cellular endosperm. The Plant Journal, 95(6):1084-1101.

Carrión, Víctor J; Cordovez, Viviane; Tyc, Olaf; Etalo, Desalegn W; de Bruijn, Irene; de Jager, Victor C L; Medema, Marnix H; Eberl, Leo; Raaijmakers, Jos M (2018). Involvement of Burkholderiaceae and sulfurous volatiles in disease-suppressive soils. The ISME journal, 12(9):2307-2321.

Keller, Beat; Wicker, Thomas; Krattinger, Simon G (2018). Advances in Wheat and Pathogen Genomics: Implications for Disease Control. Annual Review of Phytopathology, 56(1):67-87.

Appels, Rudi; Eversole, Kellye; Feuillet, Catherine; et al; Keller, Beat; Singh, K; Chhuneja, P; Gupta, O P; Jindal, S; Kaur, P; Malik, P; Sharma, P; Yadav, Bharat (2018). Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science, 361(6403):eaar7191.

Schöneberg, Torsten; Musa, Tomke; Forrer, Hans-Rudolf; Mascher, Fabio; Bucheli, Thomas D; Bertossa, Mario; Keller, Beat; Vogelgsang, Susanne (2018). Infection conditions of Fusarium graminearum in barley are variety specific and different from those in wheat. European Journal of Plant Pathology, 151(4):975-989.

Franck, Christina Maria; Westermann, Jens; Bürssner, Simon; Lentz, Roswitha; Lituiev, Dmytro Sergiiovych; Boisson-Dernier, Aurélien (2018). The Protein Phosphatases ATUNIS1 and ATUNIS2 Regulate Cell Wall Integrity in Tip-Growing Cells. Plant Cell, 30(8):1906-1923.

Schreier, Tina B; Cléry, Antoine; Schläfli, Michael; Galbier, Florian; Stadler, Martha; Demarsy, Emilie; Albertini, Daniele; Maier, Benjamin A; Kessler, Felix; Hörtensteiner, Stefan; Zeeman, Samuel C; Kötting, Oliver (2018). Plastidial NAD-Dependent Malate Dehydrogenase: A Moonlighting Protein Involved in Early Chloroplast Development through Its Interaction with an FtsH12-FtsHi Protease Complex. Plant Cell, 30(8):1745-1769.

Kessi, Janine; Hörtensteiner, Stefan (2018). Inhibition of bacteriochlorophyll biosynthesis in the purple phototrophic bacteria Rhodospirillumrubrum and Rhodobacter capsulatus grown in the presence of a toxic concentration of selenite. BMC Microbiology, 18(1):81.

Grujcic, Vesna; Nuy, Julia K; Salcher, Michaela M; Shabarova, Tanja; Kasalicky, Vojtech; Boenigk, Jens; Jensen, Manfred; Simek, Karel (2018). Cryptophyta as major bacterivores in freshwater summer plankton. The ISME journal, 12(7):1668-1681.

Leinweber, Anne; Weigert, Michael; Kümmerli, Rolf (2018). The bacterium Pseudomonas aeruginosa senses and gradually responds to interspecific competition for iron. Evolution, 72(7):1515-1528.

Durgud, Meriem; Gupta, Saurabh; Ivanov, Ivan; Omidbakhshfard, M Amin; Benina, Maria; Alseekh, Saleh; Staykov, Nikola; Hauenstein, Mareike; Dijkwel, Paul P; Hörtensteiner, Stefan; Toneva, Valentina; Brotman, Yariv; Fernie, Alisdair R; Mueller-Roeber, Bernd; Gechev, Tsanko S (2018). Molecular Mechanisms Preventing Senescence in Response to Prolonged Darkness in a Desiccation-Tolerant Plant. Plant Physiology, 177(3):1319-1338.

Bock, Christina; Salcher, Michaela M; Jensen, Manfred; Pandey, Ram Vinay; Boenigk, Jens (2018). Synchrony of Eukaryotic and Prokaryotic Planktonic Communities in Three Seasonally Sampled Austrian Lakes. Frontiers in Microbiology, 9:1290.

Dragoš, Anna; Kiesewalter, Heiko; Martin, Marivic; Hsu, Chih-Yu; Hartmann, Raimo; Wechsler, Tobias; Eriksen, Carsten; Brix, Susanne; Drescher, Knut; Stanley-Wall, Nicola; Kümmerli, Rolf; Kovács, Ákos T (2018). Division of Labor during Biofilm Matrix Production. Current Biology, 28(12):1903-1913.e5.

Lardi, Martina; Pessi, Gabriella (2018). Functional Genomics Approaches to Studying Symbioses between Legumes and Nitrogen-Fixing Rhizobia. High-Throughput, 7(2):15.

Silva, Marisa O D; Blom, Judith F; Yankova, Yana; Villiger, Jörg; Pernthaler, Jakob (2018). Priming of microbial microcystin degradation in biomass-fed gravity driven membrane filtration biofilms. Systematic and Applied Microbiology, 41(3):221-231.

Weidmann, Lukas; Jacquat, Christiane; Oertle, Daniel (2018). Quinoa oder die Gefahren des gesunden Essens. Swiss Medical Forum, 18(18):407-408.

Tylewicz, S; Petterle, A; Marttila, S; Miskolczi, P; Azeez, A; Singh, R K; Immanen, J; Mähler, N; Hvidsten, T R; Eklund, D M; Bowman, J L; Helariutta, Y; Bhalerao, R P (2018). Photoperiodic control of seasonal growth is mediated by ABA acting on cell-cell communication. Science, 360(6385):212-215.

Hedhly, Afif; Vogler, Hannes; Eichenberger, Christof; Grossniklaus, Ueli (2018). Whole-mount Clearing and Staining of <em>Arabidopsis</em> Flower Organs and Siliques. Journal of Visualized Experiments (Jove), (134):online.

Keller, Beat; Krattinger, Simon G (2018). A new player in race-specific resistance. Nature Plants, 4(4):197-198.

McNally, Kaitlin Elyse; Menardo, Fabrizio; Lüthi, Linda; Praz, Coraline Rosalie; Müller, Marion Claudia; Kunz, Lukas; Ben-David, Roi; Chandrasekhar, Kottakota; Dinoor, Amos; Cowger, Christina; Meyers, Emily; Xue, Mingfeng; Zeng, Fangsong; Gong, Shuangjun; Yu, Dazhao; Bourras, Salim; Keller, Beat (2018). Distinct domains of the AVRPM3A2/F2 avirulence protein from wheat powdery mildew are involved in immune receptor recognition and putative effector function. New Phytologist, 218(2):681-695.

Lardi, Martina; Liu, Yilei; Giudice, Gaetano; Ahrens, Christian H; Zamboni, Nicola; Pessi, Gabriella (2018). Metabolomics and Transcriptomics Identify Multiple Downstream Targets of Paraburkholderia phymatum σ54 During Symbiosis with Phaseolus vulgaris. International Journal of Molecular Sciences, 19(4):1049.

Koller, Teresa; Brunner, Susanne; Herren, Gerhard; Hurni, Severine; Keller, Beat (2018). Pyramiding of transgenic Pm3 alleles in wheat results in improved powdery mildew resistance in the field. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 131(4):861-871.

Kliver, Sergei; Rayko, Mike; Komissarov, Alexey; Bakin, Evgeny; Zhernakova, Daria; Prasad, Kasavajhala; Rushworth, Catherine; Baskar, R; Smetanin, Dmitry; Schmutz, Jeremy; Rokhsar, Daniel S; Mitchell-Olds, Thomas; Grossniklaus, Ueli; Brukhin, Vladimir (2018). Assembly of the Boechera retrofracta Genome and Evolutionary Analysis of Apomixis-Associated Genes. Genes, 9(4):185.

Losasso, Carmen; Eckert, Ester M; Mastrorilli, Eleonora; Villiger, Jorg; Mancin, Marzia; Patuzzi, Ilaria; Di Cesare, Andrea; Cibin, Veronica; Barrucci, Federica; Pernthaler, Jakob; Corno, Gianluca; Ricci, Antonia (2018). Assessing the Influence of Vegan, Vegetarian and Omnivore Oriented Westernized Dietary Styles on Human Gut Microbiota: A Cross Sectional Study. Frontiers in Microbiology:9:317.

Simonini, Sara; Stephenson, Pauline; Østergaard, Lars (2018). A molecular framework controlling style morphology in Brassicaceae. Development, 145(5):dev158105.

Zhang, Qianqian; van Wijk, Ringo; Shahbaz, Muhammad; Roels, Wendy; van Schooten, Bas; Vermeer, Joop E M; Zarza, Xavier; Guardia, Aisha; Scuffi, Denise; García-Mata, Carlos; Laha, Debabrata; Williams, Phoebe; Willems, Leo A J; Ligterink, Wilco; Hoffmann-Benning, Susanne; Gillaspy, Glenda; Schaaf, Gabriel; Haring, Michel A; Laxalt, Ana M; Munnik, Teun (2018). Arabidopsis Phospholipase C3 is Involved in Lateral Root Initiation and ABA Responses in Seed Germination and Stomatal Closure. Plant & Cell Physiology, 59(3):469-486.

Krempaska, Natalia; Horňák, Karel; Pernthaler, Jakob (2018). Spatiotemporal distribution and microbial assimilation of polyamines in a mesotrophic lake. Limnology and Oceanography, 63(2):816-832.

Sapala, Aleksandra; Runions, Adam; Routier-Kierzkowska, Anne-Lise; Das Gupta, Mainak; Hong, Lilan; Hofhuis, Hugo; Verger, Stéphane; Mosca, Gabriella; Li, Chun-Biu; Hay, Angela; Hamant, Olivier; Roeder, Adrienne H K; Tsiantis, Miltos; Prusinkiewicz, Przemyslaw; Smith, Richard S (2018). Why plants make puzzle cells, and how their shape emerges. eLife, 7:e32794.

de Brito Francisco, Rita; Martinoia, Enrico (2018). The Vacuolar Transportome of Plant Specialized Metabolites. Plant & Cell Physiology, 59(7):1326-1336.

Praz, Coraline R; Menardo, Fabrizio; Robinson, Mark D; Müller, Marion C; Wicker, Thomas; Bourras, Salim; Keller, Beat (2018). Non-parent of Origin Expression of Numerous Effector Genes Indicates a Role of Gene Regulation in Host Adaption of the Hybrid Triticale Powdery Mildew Pathogen. Frontiers in Plant Science, 9:49.

Roth, Morgane; Florez-Rueda, Ana M; Griesser, Stephan; Paris, Margot; Städler, Thomas (2018). Incidence and developmental timing of endosperm failure in post-zygotic isolation between wild tomato lineages. Annals of Botany, 121(1):107-118.

Crüsemann, Max; Reher, Raphael; Schamari, Isabella; Brachmann, Alexander O; Ohbayashi, Tsubasa; Kuschak, Markus; Malfacini, Davide; Seidinger, Alexander; Pinto-Carbó, Marta; Richarz, René; Reuter, Tatjana; Kehraus, Stefan; Hallab, Asis; Attwood, Misty; Schiöth, Helgi B; Mergaert, Peter; Kikuchi, Yoshitomo; Schäberle, Till F; Kostenis, Evi; Wenzel, Daniela; Müller, Christa E; Piel, Jörn; Carlier, Aurélien; Eberl, Leo; König, Gabriele M (2018). Heterologous Expression, Biosynthetic Studies, and Ecological Function of the Selective Gq-Signaling Inhibitor FR900359. Angewandte Chemie Internationale Edition, 57(3):836-840.

Keller, Beat; Sánchez-Martín, Javier; Bourras, Salim (2018). Diseases affecting wheat and barley: powdery mildew. In: Burleigh, Rob; Dodds, Francis. Integrated disease management of wheat and barley. Cambridge: Burleigh Dodds Science Publishing, 4.

Mosca, Gabriella; Adibi, Milad; Strauss, Soeren; Runions, Adam; Sapala, Aleksandra; Smith, Richard S (2018). Modeling Plant Tissue Growth and Cell Division. In: Mosca, Gabriella. Mathematical Modelling in Plant Biology. Switzerland: Springer, 107-138.

Schöneberg, Torsten; Jenny, Eveline; Wettstein, Felix E; Bucheli, Thomas D; Mascher, Fabio; Bertossa, Mario; Musa, Tomke; Seifert, Keith; Gräfenhan, Tom; Keller, Beat; Vogelgsang, Susanne (2018). Occurrence of Fusarium species and mycotoxins in Swiss oats—Impact of cropping factors. European Journal of Agronomy, 92:123-132.

Stritt, Christoph; Gordon, Sean P; Wicker, Thomas; Vogel, John P; Roulin, Anne C (2018). Recent activity in expanding populations and purifying selection have shaped transposable element landscapes across natural accessions of the mediterranean grass brachypodium distachyon. Genome Biology and Evolution, 10(1):304-318.

Thieme, Michael; Bucher, Etienne (2018). Transposable Elements as Tool for Crop Improvement. In: Gallusci, Philippe; Bucher, Etienne; Mirouze, Marie. View on ScienceDirect Plant Epigenetics Coming of Age for Breeding Applications. Amsterdam: Elsevier, 165-202.

Sasse, Joelle; Martinoia, Enrico; Northen, Trent (2018). Feed Your Friends: Do Plant Exudates Shape the Root Microbiome? Trends in Plant Science, 23(1):25-41.

Boni, Rainer; Chauhan, Harsh; Hensel, Goetz; Roulin, Anne; Sucher, Justine; Kumlehn, Jochen; Brunner, Susanne; Krattinger, Simon G; Keller, Beat (2018). Pathogen-inducible Ta-Lr34res expression in heterologous barley confers disease resistance without negative pleiotropic effects. Plant Biotechnology Journal, 16(1):245-253.

Wang, Jinlong; Grubb, Lauren E; Wang, Jiayu; Liang, Xiangxiu; Li, Lin; Gao, Chulei; Ma, Miaomiao; Feng, Feng; Li, Meng; Li, Lei; Zhang, Xiaojuan; Yu, Feifei; Xie, Qi; Chen, She; Zipfel, Cyril; Monaghan, Jacqueline; Zhou, Jian-Min (2018). A Regulatory Module Controlling Homeostasis of a Plant Immune Kinase. Molecular Cell, 69(3):493-504.e6.

Tsuchimatsu, Takashi; Kakui, Hiroyuki; Yamazaki, Misako; Marona, Cindy; Tsutsui, Hiroki; Hedhly, Afif; Meng, Dazhe; Sato, Yutaka; Stadler, Thomas; Grossniklaus, Ueli; Kanaoka, Masahiro M; Lenhard, Michael; Nordborg, Magnus; Shimizu, Kentaro K (2018). Adaptive Reduction of Male Gamete Number in a Selfing Species. bioRxiv n/a, Cold Spring Harbor Laboratory.

Jacquat, Christiane; Della Casa, Philippe (2018). Airolo-Madrano (TI): Palaeoenvironment and subsistence strategies of a hilltop settlement in the southern Swiss Alps during the Bronze and Iron Ages. Quaternary International: The Journal of the International Union for Quaternary Research, 484:32-43.

Jacquat, Christiane (2018). Airolo-Madrano “In Grop”: Archaeobotanical Analysis – Palaeoenvironment and Mountain Economies in the Bronze and Iron Ages. In: Della Casa, Philippe. The Leventina Prehistoric Landscape. Switzerland: Chronos Verlag, 171-189.

Ziemann, Sebastian; van der Linde, Karina; Lahrmann, Urs; Acar, Beyda; Kaschani, Farnusch; Colby, Tom; Kaiser, Markus; Ding, Yezhang; Schmelz, Eric; Huffaker, Alisa; Holton, Nicholas; Zipfel, Cyril; Doehlemann, Gunther (2018). An apoplastic peptide activates salicylic acid signalling in maize. Nature Plants, 4:172-180.

Smakowska-Luzan, Elwira; Mott, G Adam; Parys, Katarzyna; Stegmann, Martin; Howton, Timothy C; Layeghifard, Mehdi; Neuhold, Jana; Lehner, Anita; Kong, Jixiang; Grünwald, Karin; Weinberger, Natascha; Satbhai, Santosh B; Mayer, Dominik; Busch, Wolfgang; Madalinski, Mathias; Stolt-Bergner, Peggy; Provart, Nicholas J; Mukhtar, M Shahid; Zipfel, Cyril; Desveaux, Darrell; Guttman, David S; Belkhadir, Youssef (2018). An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Nature, 553:342-346.

Šimek, Karel; Grujčić, Vesna; Hahn, Martin W; Horňák, Karel; Jezberová, Jitka; Kasalický, Vojtěch; Nedoma, Jiří; Salcher, Michaela M; Shabarova, Tanja (2018). Bacterial prey food characteristics modulate community growth response of freshwater bacterivorous flagellates. Limnology and Oceanography, 63(1):484-502.

Das, Aditi; Guyer, Luzia; Hörtensteiner, Stefan (2018). Chlorophyll and Chlorophyll Catabolite Analysis by HPLC. In: Guo, Yongfeng. Plant Senescence : Methods and Protocols. New York: Springer, 223-235.

Peter, Nicole Noemi Anne. Chlorophyll breakdown : regulation of pheophorbide a oxygenase. 2018, University of Zurich, Faculty of Science.

Ma, Xin; Keller, Beat; McDonald, Bruce A; Palma-Guerrero, Javier; Wicker, Thomas (2018). Comparative transcriptomics reveals how wheat responds to infection by Zymoseptoria tritici. Molecular Plant-Microbe Interactions, 31(4):420-431.

Thind, Anupriya Kaur. Cultivar-specific long-range chromosome assembly permits rapid gene isolation and high-quality comparative analysis in hexaploid wheat. 2018, University of Zurich, Faculty of Science.

Roth, Morgane; Florez-Rueda, Ana M; Staedler, Thomas (2018). Differences in effective ploidy as drivers of genome-wide endosperm expression asymmetries and seed failure in wild tomato hybrids. bioRxiv 459925, Cold Spring Harbor Laboratory.

Säle, Verena. Genetic and functional diversity of arbuscular mycorrhizal fungi from agricultural soils. 2018, University of Zurich, Faculty of Science.

Gétaz, Michael. Genomic investigations of the strawberry quarantine bacterial pathogen Xanthomonas fragariae for a better integrative pest management. 2018, University of Zurich, Faculty of Science.

Liu, Yilei; Pessi, Gabriella; Riedel, Katharina; Eberl, Leo (2018). Identification of AHL- and BDSF-Controlled Proteins in Burkholderia cenocepacia by Proteomics. Methods in Molecular Biology, 1673:193-202.

Rövekamp, Moritz. Insights from Marchantia polymorpha into the evolutionary development of land plant sexual reproduction. 2018, University of Zurich, Faculty of Science.

Schubert, Jasmin Anita. Investigating the mechanism and role of linker histone dynamics during plant reproduction. 2018, University of Zurich, Faculty of Science.

Richter, Anja M; Fazli, Mustafa; Schmid, Nadine; Shilling, Rebecca; Suppiger, Angela; Givskov, Michael; Eberl, Leo; Tolker-Nielsen, Tim (2018). Key Players and Individualists of Cyclic-di-GMP Signaling in Burkholderia cenocepacia. Frontiers in Microbiology, 9:3286.

Ndinyanka Fabrice, Tohnyui; Vogler, Hannes; Draeger, Christian; Munglani, Gautam; Gupta, Shibu; Herger, Aline Galatea; Knox, Paul; Grossniklaus, Ueli; Ringli, Christoph (2018). LRX Proteins play a crucial role in pollen grain and pollen tube cell wall development. Plant Physiology, 176(3):1981-1992.

Pinto Carbó, Marta Adriana. Leaf nodule symbiosis in the genomic era : new insights into bacterial symbiont evolution, function and transmission. 2018, University of Zurich, Faculty of Science.

Fabbri, Carlotta. Microbial metal mobilization from metal-containing solids : a study of Penicillium, Halothiobacillus and Pseudomonas. 2018, University of Zurich, Faculty of Science.

Deppe, Johannes. Physiological characterization of the wheat ABC transporter Lr34. 2018, University of Zurich, Faculty of Science.

Bender, Kyle W; Zipfel, Cyril (2018). Plant G-protein activation: connecting to plant receptor kinases. Cell Research, 28(7):697-698.

Perraki, Artemis; Gronnier, Julien; Gouguet, Paul; Boudsocq, Marie; Deroubaix, Anne-Flore; Simon, Vincent; German-Retana, Sylvie; Legrand, Anthony; Habenstein, Birgit; Zipfel, Cyril; Bayer, Emmanuelle; Mongrand, Sébastien; Germain, Véronique (2018). REM1.3's phospho-status defines its plasma membrane nanodomain organization and activity in restricting PVX cell-to-cell movement. PLoS Pathogens, 14(11):e1007378.

da Silva, Ana Marisa Oliveira. Removal of microcystins by mature biofilms during water filtration. 2018, University of Zurich, Faculty of Science.

Nigro, Arianna. Sugar metabolism in the guard cells of Arabidopsis thaliana. 2018, University of Zurich, Faculty of Science.

Engelsdorf, Timo; Gigli-Bisceglia, Nora; Veerabagu, Manikandan; McKenna, Joseph F; Vaahtera, Lauri; Augstein, Frauke; Van der Does, Dieuwertje; Zipfel, Cyril; Hamann, Thorsten (2018). The plant cell wall integrity maintenance and immune signaling systems cooperate to control stress responses inArabidopsis thaliana. Science Signaling, 11(536):eaao3070.

Leinweber, Anne. The struggle for iron: how it affects cooperation, competition and biodiversity in bacterial communities. 2018, University of Zurich, Faculty of Science.

Sucher, J; Menardo, F; Praz, C R; Boni, R; Krattinger, S G; Keller, B (2018). Transcriptional profiling reveals no response of fungal pathogens to the durable, quantitative Lr34 disease resistance gene of wheat. Plant Biology, 67(4):792-798.

Fabrice, Tohnyui Ndinyanka; Cherkezyan, Lusik; Ringli, Christoph; Baroux, Célia (2018). Transmission electron microscopy imaging to analyze chromatin density distribution at the nanoscale level. In: Bemer, Marian; Baroux, Célia. Plant Chromatin Dynamics : Methods and Protocols. New York, NY: Springer, 633-651.

Müller, Thomas; Schierscher-Viret, Beate; Fossati, Dario; Brabant, Cécile; Schori, Arnold; Keller, Beat; Krattinger, Simon G (2018). Unlocking the diversity of genebanks: whole-genome marker analysis of Swiss bread wheat and spelt. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 131(2):407-416.

Lardi, Martina. Unravelling the molecular basis of the nitrogen-fixing symbiosis between legumes and beta-rhizobia. 2018, University of Zurich, Faculty of Science.

Liu, Qinsong; Vain, Thomas; Viotti, Corrado; Doyle, Siamsa M; Tarkowská, Danuše; Novák, Ondřej; Zipfel, Cyril; Sitbon, Folke; Robert, Stéphanie; Hofius, Daniel (2018). Vacuole Integrity Maintained by DUF300 Proteins Is Required for Brassinosteroid Signaling Regulation. Molecular Plant, 11(4):553-567.

2017

Wicker, Thomas; Schulman, Alan H; Tanskanen, Jaakko; Spannagl, Manuel; Twardziok, Sven; Mascher, Martin; Springer, Nathan M; Li, Qing; Waugh, Robbie; Li, Chengdao; Zhang, Guoping; Stein, Nils; Mayer, Klaus F. X; Gundlach, Heidrun (2017). The repetitive landscape of the 5100 Mbp barley genome. Mobile DNA:8:22.

Gordon, Sean P; Contreras-Moreira, Bruno; Woods, Daniel P; Des Marais, David L; Burgess, Diane; Shu, Shengqiang; Stritt, Christoph; Roulin, Anne C; Schackwitz, Wendy; Tyler, Ludmila; Martin, Joel; Lipzen, Anna; Dochy, Niklas; Phillips, Jeremy; Barry, Kerrie; Geuten, Koen; Budak, Hikmet; Juenger, Thomas E; Amasino, Richard; Caicedo, Ana L; Goodstein, David; Davidson, Patrick; Mur, Luis A J; Figueroa, Melania; Freeling, Michael; Catalan, Pilar; Vogel, John P (2017). Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure. Nature Communications, 8(1):2184.

Lardi, Martina; Liu, Yilei; Purtschert, Gabriela; Bolzan de Campos, Samanta; Pessi, Gabriella (2017). Transcriptome Analysis of Paraburkholderia phymatum under Nitrogen Starvation and during Symbiosis with Phaseolus Vulgaris. Genes, 8(12):E389.

Praz, Coraline R; Bourras, Salim; Zeng, Fansong; Sánchez-Martín, Javier; Menardo, Fabrizio; Xue, Minfeng; Yang, Lijun; Roffler, Stefan; Böni, Rainer; Herren, Gerard; McNally, Kaitlin E; Ben-David, Roi; Parlange, Francis; Oberhaensli, Simone; Flückiger, Simon; Schäfer, Luisa K; Wicker, Thomas; Yu, Dazhao; Keller, Beat (2017). AvrPm2 encodes an RNase-like avirulence effector which is conserved in the two different specialized forms of wheat and rye powdery mildew fungus. New Phytologist, 213(3):1301-1314.

Christ, Bastien; Hochstrasser, Ramon; Guyer, Luzia; Francisco, Rita; Aubry, Sylvain; Hörtensteiner, Stefan; Weng, Jing-Ke (2017). Non-specific activities of the major herbicide-resistance gene BAR. Nature Plants, 3(12):937-945.

Luo, Ming-Cheng; Gu, Yong Q; et al; Wicker, Thomas; Dvořák, Jan (2017). Genome sequence of the progenitor of the wheat D genome Aegilops tauschii. Nature:498-502.

Higgins, Steven; Sanchez-Contreras, Maria; Gualdi, Stefano; Pinto-Carbó, Marta; Carlier, Aurélien; Eberl, Leo (2017). The Essential Genome of Burkholderia cenocepacia H111. Journal of Bacteriology, 199(22):e00260-17.

Ruinelli, Michela. Genomic Investigations of Members of the Pseudomonas syringae Species Complex Associated with Prunus spp. and Kiwifruit. 2017, University of Zurich, Faculty of Science.

Menardo, Fabrizio; Praz, Coraline R; Wicker, Thomas; Keller, Beat (2017). Rapid turnover of effectors in grass powdery mildew (Blumeria graminis). BMC Evolutionary Biology, 17(1):223.

Ndinyanka Fabrice, Tohnyui; Kaech, Andres; Barmettler, Gery; Eichenberger, Christof; Knox, J Paul; Grossniklaus, Ueli; Ringli, Christoph (2017). Efficient preparation of Arabidopsis pollen tubes for ultrastructural analysis using chemical and cryo-fixation. BMC Plant Biology, 17:176.

Park, Jiyoung; Lee, Youngsook; Martinoia, Enrico; Geisler, Markus (2017). Plant hormone transporters: what we know and what we would like to know. BMC Biology, 15(1):93.

Yankova, Yana; Neuenschwander, Stefan; Köster, Oliver; Posch, Thomas (2017). Abrupt stop of deep water turnover with lake warming: Drastic consequences for algal primary producers. Scientific Reports, 7(1):13770.

Bowman, John L; Kohchi, Takayuki; Yamato, Katsuyuki T; Jenkins, Jerry; Shu, Shengqiang; Ishizaki, Kimitsune; Yamaoka, Shohei; Nishihama, Ryuichi; Nakamura, Yasukazu; Berger, Frédéric; Adam, Catherine; Aki, Shiori Sugamata; Althoff, Felix; Araki, Takashi; Arteaga-Vazquez, Mario A; Balasubrmanian, Sureshkumar; Barry, Kerrie; Bauer, Diane; Boehm, Christian R; Briginshaw, Liam; Caballero-Perez, Juan; Catarino, Bruno; Chen, Feng; Chiyoda, Shota; Chovatia, Mansi; Davies, Kevin M; Delmans, Mihails; Demura, Taku; Dierschke, Tom; Dolan, Liam; Rövekamp, Moritz; Schmid, Marc W; et al (2017). Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome. Cell, 171(2):287-304.

Yang, Ping; Herren, Gerhard; Krattinger, Simon; Keller, Beat (2017). Large-scale maize seedling infection with exserohilum turcicum in the greenhouse. Bio-protocol, 7(19):e2567.

Gujas, Bojan; Cruz, Tiago M D; Kastanaki, Elizabeth; Vermeer, Joop E M; Munnik, Teun; Rodriguez-Villalon, Antia (2017). Perturbing phosphoinositide homeostasis oppositely affects vascular differentiation in Arabidopsis thaliana roots. Development, 144(19):3578-3589.

Eisenach, Cornelia; Baetz, Ulrike; Huck, Nicola V; Zhang, Jingbo; De Angeli, Alexis; Beckers, Gerold J M; Martinoia, Enrico (2017). ABA-induced stomatal closure involves ALMT4, a phosphorylation-dependent vacuolar anion channel of arabidopsis. Plant Cell, 29(10):2552-2569.

Granato, Elisa T; Kümmerli, Rolf (2017). The path to re-evolve cooperation is constrained in Pseudomonas aeruginosa. BMC Evolutionary Biology, 17(1):214.

Stoeckle, Dorothee; Thellmann, Martha; Vermeer, Joop E M (2017). Breakout-lateral root emergence in Arabidopsis thaliana. Current Opinion in Plant Biology, 41:67-72.

Pitsch, Gianna; Adamec, Lubomír; Dirren, Sebastian; Nitsche, Frank; Šimek, Karel; Sirová, Dagmara; Posch, Thomas (2017). The green tetrahymena utriculariae n. sp. (ciliophora, oligohymenophorea) with its endosymbiotic algae (micractinium sp.), living in traps of a carnivorous aquatic plant. Journal of Eukaryotic Microbiology, 64(3):322-335.

Schöneberg, Torsten. Occurrence and Epidemiology of Fusarium Species in Barley and Oats. 2017, University of Zurich, Faculty of Science.

Šimek, Karel; Pitsch, Gianna; Salcher, Michaela M; Sirová, Dagmara; Shabarova, Tanja; Adamec, Lubomír; Posch, Thomas (2017). Ecological Traits of the Algae-Bearing Tetrahymena utriculariae (Ciliophora) from Traps of the Aquatic Carnivorous Plant Utricularia reflexa. Journal of Eukaryotic Microbiology, 64(3):336-348.

Guyer, Luzia; Salinger, Kathrin; Krügel, Undine; Hörtensteiner, Stefan (2017). Catalytic and structural properties of pheophytinase, the phytol esterase involved in chlorophyll breakdown. Journal of Experimental Botany, 69:879-889.

Granato, Elisa. Evolution of Cooperation and Virulence in an Opportunistic Pathogen. 2017, University of Zurich, Faculty of Science.

Kuai, Benke; Chen, Junyi; Hörtensteiner, Stefan (2017). The biochemistry and molecular biology of chlorophyll breakdown. Journal of Experimental Botany, 69(4):751-767.

Toyofuku, Masanori; Cárcamo-Oyarce, Gerardo; Yamamoto, Tatsuya; Eisenstein, Fabian; Hsiao, Chien-Chi; Kurosawa, Masaharu; Gademann, Karl; Pilhofer, Martin; Nomura, Nobuhiko; Eberl, Leo (2017). Prophage-triggered membrane vesicle formation through peptidoglycan damage in Bacillus subtilis. Nature Communications, 8:481.

Butaitė, Elena; Baumgartner, Michael; Wyder, Stefan; Kümmerli, Rolf (2017). Siderophore cheating and cheating resistance shape competition for iron in soil and freshwater Pseudomonas communities. Nature Communications, 8(1):414.

Thind, Anupriya K; Wicker, Thomas; Krattinger, Simon G (2017). Rapid identification of rust resistance genes through cultivar-specific de novo chromosome assemblies. In: Periyannan, Sam. Wheat Rust Diseases. New York, NY: Springer, 245-255.

Do, Thanh Ha Thi; Martinoia, Enrico; Lee, Youngsook (2017). Functions of ABC transporters in plant growth and development. Current Opinion in Plant Biology, 41:32-38.

Boni, Rainer. Functional Characterization of the Wheat Disease Resistance Gene Lr34 in Heterologous Barley. 2017, University of Zurich, Faculty of Science.

Dirren, Sebastian; Pitsch, Gianna; Silva, Marisa O D; Posch, Thomas (2017). Grazing of Nuclearia thermophila and Nuclearia delicatula (Nucleariidae, Opisthokonta) on the toxic cyanobacterium Planktothrix rubescens. European Journal of Protistology, 60:87-101.

Simonini, Sara; Bencivenga, Stefano; Trick, Martin; Østergaard, Lars (2017). Auxin-Induced Modulation of ETTIN Activity Orchestrates Gene Expression in Arabidopsis. Plant Cell, 29(8):1864-1882.

Fazli, Mustafa; Rybtke, Morten; Steiner, Elisabeth; Weidel, Elisabeth; Berthelsen, Jens; Groizeleau, Julie; Bin, Wu; Zhi, Boo Zhao; Yaming, Zhang; Kaever, Volkhard; Givskov, Michael; Hartmann, Rolf W; Eberl, Leo; Tolker-Nielsen, Tim (2017). Regulation of Burkholderia cenocepacia biofilm formation by RpoN and the c-di-GMP effector BerB. MicrobiologyOpen, 6(4):e00480.

Thalmann, Matthias. The Function and Regulation of Starch Degradation during Plant Responses to Abiotic Stress. 2017, University of Zurich, Faculty of Science.

Khare, Deepa; Choi, Hyunju; Huh, Sung Un; Bassin, Barbara; Kim, Jeongsik; Martinoia, Enrico; Sohn, Kee Hoon; Paek, Kyung-Hee; Lee, Youngsook (2017). Arabidopsis ABCG34 contributes to defense against necrotrophic pathogens by mediating the secretion of camalexin. Proceedings of the National Academy of Sciences of the United States of America, 114(28):E5712-E5720.

Vermeer, Joop E M; van Wijk, Ringo; Goedhart, Joachim; Geldner, Niko; Chory, Joanne; Gadella, Theodorus W J; Munnik, Teun (2017). In Vivo Imaging of Diacylglycerol at the Cytoplasmic Leaflet of Plant Membranes. Plant & Cell Physiology, 58(7):1196-1207.

Agnoli, Kirsty; Freitag, Roman; Gomes, Margarida C; Jenul, Christian; Suppiger, Angela; Mannweiler, Olga; Frauenknecht, Carmen; Janser, Daniel; Vergunst, Annette C; Eberl, Leo (2017). Use of Synthetic Hybrid Strains To Determine the Role of Replicon 3 in Virulence of the Burkholderia cepacia Complex. Applied and Environmental Microbiology, 83(13):e00461-17.

Weigert, Michael; Kümmerli, Rolf (2017). The physical boundaries of public goods cooperation between surface-attached bacterial cells. Proceedings of the Royal Society of London, Series B: Biological Sciences, 284(1858):20170631.

Eversole, Kellye; Rogers, Jane; Keller, Beat; Appels, Rudi; Feuillet, Catherine (2017). Sequencing and assembly of the wheat genome. In: Langridge, Peter. Achieving sustainable cultivation of wheat Volume 1: Breeding, quality traits, pests and diseases. Cambridge, UK: Burleigh Dodds Science Publishing, 25-52.

Ezer, Daphne; Jung, Jae-Hoon; Lan, Hui; Biswas, Surojit; Gregoire, Laura; Box, Mathew S; Charoensawan, Varodom; Cortijo, Sandra; Lai, Xuelei; Stöckle, Dorothee; Zubieta, Chloe; Jaeger, Katja E; Wigge, Philip A (2017). The evening complex coordinates environmental and endogenous signals in Arabidopsis. Nature Plants, 3:17087.

Yankova, Yana. Effects of Lake Warming on Cyanobacterial and Algal Bloom Dynamics. 2017, University of Zurich, Faculty of Science.

Baumgartner, Michael; Roffler, Stefan; Wicker, Thomas; Pernthaler, Jakob (2017). Letting go: bacterial genome reduction solves the dilemma of adapting to predation mortality in a substrate-restricted environment. The ISME journal, 11(10):2258-2266.

Hu, Chengzhi; Zhang, Qi; Meyer, Tobias; Vogler, Hannes; Burri, Jan T; Shamsudhin, Naveen; Grossniklaus, Ueli; Nelson, Bradley J (2017). In vivo tracking and measurement of pollen tube vesicle motion. In: 2017 IEEE International Conference on Robotics and Automation (ICRA), Singapore, 29 May 2017 - 3 June 2017. IEEE, 3575-3580.

Kang, Joohyun; Lee, Youngsook; Sakakibara, Hitoshi; Martinoia, Enrico (2017). Cytokinin transporters: GO and STOP in signaling. Trends in Plant Science, 22(6):455-461.

Toyofuku, Masanori; Morinaga, Kana; Hashimoto, Yohei; Uhl, Jenny; Shimamura, Hiroko; Inaba, Hideki; Schmitt-Kopplin, Philippe; Eberl, Leo; Nomura, Nobuhiko (2017). Membrane vesicle-mediated bacterial communication. The ISME journal, 11(6):1504-1509.

Santelia, Diana; Lunn, John E (2017). Transitory starch metabolism in guard cells: unique features for a unique function. Plant Physiology, 174(2):539-549.

Ndinyanka Fabrice, Tohnyui. An Integrated Systems Understanding of the Dynamic Interplay between Plant Cell Growth and Pollen Tube Cell Wall Development. 2017, University of Zurich, Faculty of Science.

Nadal, Marina; Sawers, Ruairidh; Naseem, Shamoon; Bassin, Barbara; Kulicke, Corinna; Sharman, Abigail; An, Gynheung; An, Kyungsook; Ahern, Kevin R; Romag, Amanda; Brutnell, Thomas P; Gutjahr, Caroline; Geldner, Niko; Roux, Christophe; Martinoia, Enrico; Konopka, James B; Paszkowski, Uta (2017). An N-acetylglucosamine transporter required for arbuscular mycorrhizal symbioses in rice and maize. Nature Plants, 3:17073.

Pernthaler, Jakob (2017). Competition and niche separation of pelagic bacteria in freshwater habitats. Environmental Microbiology, 19(6):2133-2150.

Thind, Anupriya Kaur; Wicker, Thomas; Šimková, Hana; Fossati, Dario; Moullet, Odile; Brabant, Cécile; Vrána, Jan; Doležel, Jaroslav; Krattinger, Simon G (2017). Rapid cloning of genes in hexaploid wheat using cultivar-specific long-range chromosome assembly. Nature Biotechnology, 35(8):793-796.

Nguyen, Chi Tam; Martinoia, Enrico; Farmer, Edward E (2017). Emerging jasmonate transporters. Molecular Plant, 10(5):659-661.

Schmid, Nadine; Suppiger, Angela; Steiner, Elisabeth; Pessi, Gabriella; Kaever, Volkhard; Fazli, Mustafa; Tolker-Nielsen, Tim; Jenal, Urs; Eberl, Leo (2017). High intracellular c-di-GMP levels antagonize quorum sensing and virulence gene expression in Burkholderia cenocepacia H111. Microbiology, 163(5):754-764.

Thalmann, Matthias; Santelia, Diana (2017). Starch as a determinant of plant fitness under abiotic stress. New Phytologist, 214(3):943-951.

Mascher, Martin; Gundlach, Heidrun; et al; Wicker, Thomas; Stein, Nils (2017). A chromosome conformation capture ordered sequence of the barley genome. Nature, 544(7651):427-433.

Keller, Beat; Krattinger, Simon G (2017). Plant science: Genomic compartments in barley. Nature, 544(7651):424-425.

Schnippenkoetter, Wendelin; Lo, Clive; Liu, Guoquan; Dibley, Katherine; Chan, Wai Lung; White, Jodie; Milne, Ricky; Zwart, Alexander; Kwong, Eunjung; Keller, Beat; Godwin, Ian; Krattinger, Simon G; Lagudah, Evans (2017). The wheat Lr34 multipathogen resistance gene confers resistance to anthracnose and rust in sorghum. Plant Biotechnology Journal, 15(11):1387-1396.

Bucher, Rahel; Veyel, Daniel; Willmitzer, Lothar; Krattinger, Simon G; Keller, Beat; Bigler, Laurent (2017). Combined GC- and UHPLC-HR-MS based metabolomics to analyze durable anti-fungal resistance processes in cereals. CHIMIA International Journal for Chemistry, 71(4):156-159.

Sucher, Justine; Boni, Rainer; Yang, Ping; Rogowsky, Peter; Büchner, Heike; Kastner, Christine; Kumlehn, Jochen; Krattinger, Simon G; Keller, Beat (2017). The durable wheat disease resistance gene Lr34 confers common rust and northern corn leaf blight resistance in maize. Plant Biotechnology Journal, 15(4):489-496.

Feehan, Joanna M; Scheibel, Katherine E; Bourras, Salim; Underwood, William; Keller, Beat; Somerville, Shauna C (2017). Purification of high molecular weight genomic DNA from powdery mildew for long-read sequencing. Journal of Visualized Experiments (Jove), (121):online.

Imperiali, Nicola; Dennert, Francesca; Schneider, Jana; Laessle, Titouan; Velatta, Christelle; Fesselet, Marie; Wyler, Michele; Mascher, Fabio; Mavrodi, Olga; Mavrodi, Dmitri; Maurhofer, Monika; Keel, Christoph (2017). Relationships between root pathogen resistance, abundance and expression of pseudomonas antimicrobial genes, and soil properties in representative swiss agricultural soils. Frontiers in Plant Science, 8:427.

Hyles, J; Vautrin, S; Pettolino, F; MacMillan, C; Stachurski, Z; Breen, J; Berges, H; Wicker, T; Spielmeyer, W (2017). Repeat-length variation in a wheat cellulose synthase-like gene is associated with altered tiller number and stem cell wall composition. Journal of Experimental Botany, 68(7):1519-1529.

Grossmann, Jonas; Fernández, Helena; Chaubey, Pururawa M; Valdés, Ana E; Gagliardini, Valeria; Cañal, María J; Russo, Giancarlo; Grossniklaus, Ueli (2017). Proteogenomic analysis greatly expands the identification of proteins related to reproduction in the apogamous fern dryopteris affinis ssp. affinis. Frontiers in Plant Science, 8:336.

Rinaldo, Amy; Gilbert, Brian; Boni, Rainer; Krattinger, Simon G; Singh, Davinder; Park, Robert F; Lagudah, Evans; Ayliffe, Michael (2017). The Lr34 adult plant rust resistance gene provides seedling resistance in durum wheat without senescence. Plant Biotechnology Journal, 15(7):894-905.

Shabarova, Tanja; Kasalický, Vojtěch; Šimek, Karel; Nedoma, Jiří; Znachor, Petr; Posch, Thomas; Pernthaler, Jakob; Salcher, Michaela M (2017). Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach. Environmental Microbiology, 19(3):1296-1309.

Krattinger, Simon G; Keller, Beat (2017). Resistance: Double gain with one gene. Nature Plants, 3:17019.

Kuhn, Benjamin M; Nodzyński, Tomasz; Errafi, Sanae; Bucher, Rahel; Gupta, Shibu; Aryal, Bibek; Dobrev, Petre; Bigler, Laurent; Geisler, Markus; Zažímalová, Eva; Friml, Jiří; Ringli, Christoph (2017). Flavonol-induced changes in PIN2 polarity and auxin transport in the Arabidopsis thaliana rol1-2 mutant require phosphatase activity. Scientific Reports, 7:41906.

Menardo, Fabrizio; Wicker, Thomas; Keller, Beat (2017). Reconstructing the evolutionary history of powdery mildew lineages (Blumeria graminis) at different evolutionary time scales with NGS data. Genome Biology and Evolution, 9(2):446-456.

Zhang, Jie; Hwang, Jae-Ung; Song, Won-Yong; Martinoia, Enrico; Lee, Youngsook (2017). Identification of amino acid residues important for the arsenic resistance function of Arabidopsis ABCC1. FEBS letters, 591(4):656-666.

Khare, Deepa; Mitsuda, Nobukata; Lee, Seungchul; Song, Won-Yong; Hwang, Daehee; Ohme-Takagi, Masaru; Martinoia, Enrico; Lee, Youngsook; Hwang, Jae-Ung (2017). Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytologist, 213(3):1257-1273.

Sucher, Justine. Study of the wheat resistance gene Lr34 after its transfer into heterologous crop species. 2017, University of Zurich, Faculty of Science.

Carlier, Aurelien; Cnockaert, Margo; Fehr, Linda; Vandamme, Peter; Eberl, Leo (2017). Draft genome and description of Orrella dioscoreae gen. nov. sp. nov., a new species of Alcaligenaceae isolated from leaf acumens of Dioscorea sansibarensis. Systematic and Applied Microbiology, 40(1):11-21.

Weigert, Michael; Ross-Gillespie, Adin; Leinweber, Anne; Pessi, Gabriella; Brown, Sam P; Kümmerli, Rolf (2017). Manipulating virulence factor availability can have complex consequences for infections. Evolutionary Applications, 10(1):91-101.

Vogler, Hannes; Grossniklaus, Ueli; Hedhly, Afif (2017). An introduction to male germline development. In: Schmidt, Anja. Plant Germline Development. New York: Springer, 3-15.

Alfreider, Albin; Baumer, Andreas; Bogensperger, Teresa; Posch, Thomas; Salcher, Michaela M; Summerer, Monika (2017). CO2 assimilation strategies in stratified lakes: Diversity and distribution patterns of chemolithoautotrophs. Environmental Microbiology, 19(7):2754-2768.

She, Wenjing; Baroux, Célia; Grossniklaus, Ueli (2017). Cell-type specific chromatin analysis in whole-mount plant tissues by immunostaining. In: Bemer, Marian; Baroux, Célia. Plant Chromatin Dynamics. New York: Springer, 443-454.

Singla, Jyoti; Lüthi, Linda; Wicker, Thomas; Bansal, Urmil; Krattinger, Simon G; Keller, Beat (2017). Characterization of Lr75: a partial, broad-spectrum leaf rust resistance gene in wheat. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 130(1):1-12.

Hu, Chengzhi; Munglani, Gautam; Vogler, Hannes; Ndinyanka Fabrice, Tohnyui; Shamsudhin, Naveen; Wittel, Falk K; Ringli, Christoph; Grossniklaus, Ueli; Herrmann, Hans J; Nelson, Bradley J (2017). Characterization of size-dependent mechanical properties of tip-growing cells using a lab-on-chip device. Lab on a chip, 17(1):82-90.

Leinweber, Anne; Fredrik Inglis, R; Kümmerli, Rolf (2017). Cheating fosters species co-existence in well-mixed bacterial communities. The ISME journal, 11(5):1179-1188.

Grob, Stefan; Grossniklaus, Ueli (2017). Chromatin Conformation Capture-Based Analysis of Nuclear Architecture. In: Kovalchuk, I. Plant Epigenetics. Boston, MA: Springer, 15-32.

You, Wanhui; Pien, Stéphane; Grossniklaus, Ueli (2017). Chromatin Immunoprecipitation Protocol for Histone Modifications and Protein-DNA binding analyses in arabidopsis. In: Kovalchuk, I. Plant Epigenetics. Boston, MA: Springer, 1-13.

Grob, Stefan; Grossniklaus, Ueli (2017). Chromosome conformation capture-based studies reveal novel features of plant nuclear architecture. Current Opinion in Plant Biology, 36:149-157.

Lardi, Martina; de Campos, Samanta Bolzan; Purtschert, Gabriela; Eberl, Leo; Pessi, Gabriella (2017). Competition Experiments for Legume Infection Identify Burkholderia phymatum as a Highly Competitive β-Rhizobium. Frontiers in Microbiology, 8:1527.

Sasheva, Pavlina; Grossniklaus, Ueli (2017). Differentially methylated region-representational difference analysis (DMR-RDA): a powerful method to identify DMRs in uncharacterized genomes. In: Kovalchuk, I. Plant Epigenetics. Boston, MA: Springer, 113-125.

Honegger, Rosmarie; Edwards, Dianne; Axe, Lindsey; Strullu-Derrien, Christine (2017). Fertile Prototaxites taiti: a basal ascomycete with inoperculate, polysporous asci lacking croziers. Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences, 373(1739):20170146.

Qureshi, Naeela; Bariana, Harbans; Forrest, Kerrie; Hayden, Matthew; Keller, Beat; Wicker, Thomas; Faris, Justin; Salina, Elena; Bansal, Urmil (2017). Fine mapping of the chromosome 5B region carrying closely linked rust resistance genes Yr47 and Lr52 in wheat. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 130(3):495-504.

Meier, Margrith; Suppiger, Angela; Eberl, Leo; Seeger, Stefan (2017). Functional silver-silicone-nanofilament-composite material for water disinfection. Small, 13(4):1601072.

Hu, Chengzhi; Vogler, Hannes; Aellen, Marianne; Shamsudhin, Naveen; Jang, Bumjin; Burri, Jan T; Läubli, Nino; Grossniklaus, Ueli; Pané, Salvador; Nelson, Bradley J (2017). High precision, localized proton gradients and fluxes generated by a microelectrode device induce differential growth behaviors of pollen tubes. Lab on a chip, 17(4):671-680.

Pires, Nuno D; Grossniklaus, Ueli (2017). Identification of parent-of-origin-dependent QTLs using bulk-segregant sequencing (Bulk-Seq). In: Bemer, Marian; Baroux, Célia. Plant Chromatin Dynamics. New York: Springer, 361-371.

Hauenstein, Mareike; Hörtensteiner, Stefan (2017). Isolation and detection of the chlorophyll catabolite hydroxylating activity from capsicum annuum chromoplasts. Bio-protocol, 7(18):e2561.

Bouchaud, Charlene; Jacquat, Christiane; Martinoli, Danièle (2017). Landscape use and fruit cultivation in Petra (Jordan) from Early Nabataean to Byzantine times (2nd century bc–5th century ad). Vegetation History and Archaeobotany, 26(2):223-244.

Rellstab, C; Fischer, M C; Zoller, S; Graf, R; Tedder, Andrew; Shimizu, Kentaro K; Widmer, A; Holderegger, R; Gugerli, F (2017). Local adaptation (mostly) remains local: reassessing environmental associations of climate-related candidate SNPs in Arabidopsis halleri. Heredity, 118(2):193-201.

Vogler, Hannes; Shamsudhin, Naveen; Nelson, Bradley J; Grossniklaus, Ueli (2017). Measuring cytomechanical forces on growing pollen tubes. In: Kovalchuk, I. Pollen tip growth : from biophysical aspects to systems biology. New York: Springer, 65-85.

Bailly, Aurélien; Weisskopf, Laure (2017). Mining the Volatilomes of Plant-Associated Microbiota for New Biocontrol Solutions. Frontiers in Microbiology:8:1638.

McNally, Kaitlin. Molecular and evolutionary studies of race-specific avirulence factors from wheat powdery mildew (Blumeria graminis f. sp. tritici). 2017, University of Zurich, Faculty of Science.

de Campos, Samanta Bolzan; Lardi, Martina; Gandolfi, Alessia; Eberl, Leo; Pessi, Gabriella (2017). Mutations in Two Paraburkholderia phymatum Type VI Secretion Systems Cause Reduced Fitness in Interbacterial Competition. Frontiers in Microbiology:8:2473.

Strullu-Derrien, Christine; Spencer, Alan R T; Goral, Tomasz; Dee, Jaclyn; Honegger, Rosmarie; Kenrick, Paul; Longcore, Joyce E; Berbee, Mary L (2017). New insights into the evolutionary history of Fungi from a 407 Ma Blastocladiomycota fossil showing a complex hyphal thallus. Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences, 373(1739):20160502.

Baroux, Célia; Pecinka, Ales; Fuchs, Jörg; Kreth, Gregor; Schubert, Ingo; Grossniklaus, Ueli (2017). Non-random chromosome arrangement in triploid endosperm nuclei. Chromosoma, 126(1):115-124.

Vogiatzaki, Evangelia; Baroux, Célia; Jung, Ji-Yul; Poirier, Yves (2017). PHO1 exports phosphate from the chalazal seed coat to the embryo in developing arabidopsis seeds. Current Biology, 27(19):2893-2900.

Kotliński, Maciej; Knizewski, Lukasz; Muszewska, Anna; Rutowicz, Kinga; Lirski, Maciej; Schmidt, Anja; Baroux, Célia; Ginalski, Krzysztof; Jerzmanowski, Andrzej (2017). Phylogeny-based systematization of arabidopsis proteins with histone H1 globular domain. Plant Physiology, 174(1):27-34.

Grossniklaus, Ueli (2017). Polyspermy produces tri-parental seeds in maize. Current Biology, 27(24):1300-1302.

Butaitė, Elena. Pyoverdine production and its social effects in natural communities of Pseudomonas bacteria. 2017, University of Zurich, Faculty of Science.

Mecchia, Martin A; Santos-Fernandez, Gorka; Duss, Nadine N; Somoza, Sofía C; Boisson-Dernier, Aurélien; Gagliardini, Valeria; Martínez-Bernardini, Andrea; Fabrice, Tohnyui Ndinyanka; Ringli, Christoph; Muschietti, Jorge P; Grossniklaus, Ueli (2017). RALF4/19 peptides interact with LRX proteins to control pollen tube growth in Arabidopsis. Science, 358(6370):1600-1603.

Zhao, Xin’Ai; Bramsiepe, Jonathan; Van Durme, Matthias; Komaki, Shinichiro; Prusicki, Maria Ada; Maruyama, Daisuke; Forner, Joachim; Medzihradszky, Anna; Wijnker, Erik; Harashima, Hirofumi; Lu, You; Schmidt, Anja; Guthörl, Daniela; Logroño, Rosa Sahún; Guan, Yonsheng; Pochon, Gaetan; Grossniklaus, Ueli; Laux, Thomas; Higashiyama, Tetsuya; Lohmann, Jan U; Nowack, Moritz K; Schnittger, Arp (2017). RETINOBLASTOMA RELATED1 mediates germline entry in Arabidopsis. Science, 356:6336.

Singh, Simrat Pal; Keller, Beat; Gruissem, Wilhelm; Bhullar, Navreet K (2017). Rice NICOTIANAMINE SYNTHASE 2 expression improves dietary iron and zinc levels in wheat. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 130(2):283-292.

2016

Menardo, Fabrizio. Evolutionary Genomics of Grass Powdery Mildew (Blumeria graminis). 2016, University of Zurich, Faculty of Science.

Suppiger, Angela. Fatty Acid-Based Signalling in the Genus Burkholderia: Distribution, Mechanism, Cross-Linkage. 2016, University of Zurich, Faculty of Science.

Urfer, Matthias; Bogdanovic, Jasmina; Lo Monte, Fabio; Moehle, Kerstin; Zerbe, Katja; Omasits, Ulrich; Ahrens, Christian H; Pessi, Gabriella; Eberl, Leo; Robinson, John A (2016). A peptidomimetic antibiotic targets outer membrane proteins and disrupts selectively the outer membrane in Escherichia coli. Journal of Biological Chemistry, 291:1921-1932.

Granato, Elisa T; Harrison, Freya; Kümmerli, Rolf (2016). Do bacterial “virulence factors” always increase virulence? A meta-analysis of pyoverdine production in Pseudomonas aeruginosa as a test case. Frontiers in Microbiology, 7:1952.

Sasse, Joëlle; Schlegel, Markus; Borghi, Lorenzo; Ullrich, Friederike; Lee, Miyoung; Liu, Guo-Wei; Giner, José-Luis; Kayser, Oliver; Bigler, Laurent; Martinoia, Enrico; Kretzschmar, Tobias (2016). Petunia hybrida PDR2 is involved in herbivore defense by controlling steroidal contents in trichomes. Plant, Cell & Environment, 39(12):2725-2739.

Das, A. Characterization of the PAO/phyllobilin Pathway of Chlorophyll Breakdown in Grasses. 2016, University of Zurich, Faculty of Science.

Dirren, Sebastian. The basal Opisthokonts Nuclearia spp. with associated bacterial symbionts: aspects of diversity and ecology. 2016, University of Zurich, Faculty of Science.

Sánchez-Martín, Javier; Montilla-Bascón, Gracia; Mur, Luis A J; Rubiales, Diego; Prats, Elena (2016). Compromised photosynthetic electron flow and H2O2 generation correlate with genotype-specific stomatal dysfunctions during resistance against powdery mildew in oats. Frontiers in Plant Science, 7:1660.

Sánchez-Martín, Javier; Steuernagel, Burkhard; Ghosh, Sreya; Herren, Gerhard; Hurni, Severine; Adamski, Nikolai; Vrána, Jan; Kubaláková, Marie; Krattinger, Simon G; Wicker, Thomas; Doležel, Jaroslav; Keller, Beat; Wulff, Brande B H (2016). Rapid gene isolation in barley and wheat by mutant chromosome sequencing. Genome Biology, 17(1):221.

Simonini, Sara; Deb, Joyita; Moubayidin, Laila; Stephenson, Pauline; Valluru, Manoj; Freire-Rios, Alejandra; Sorefan, Karim; Weijers, Dolf; Friml, Jiří; Østergaard, Lars (2016). A noncanonical auxin-sensing mechanism is required for organ morphogenesis in Arabidopsis. Genes and Development, 30(20):2286-2296.

Hauenstein, Mareike; Christ, Bastien; Das, Aditi; Aubry, Sylvain; Hörtensteiner, Stefan (2016). A role for TIC55 as a hydroxylase of phyllobilins, the products of chlorophyll breakdown during plant senescence. Plant Cell, 28(10):2510-2527.

Salcher, Michaela Maria; Šimek, Karel (2016). Isolation and cultivation of planktonic freshwater microbes is essential for a comprehensive understanding of their ecology. Aquatic Microbial Ecology, 77(3):183-196.

Hersemann, Lena. Characterization of Virulence Factors in Xanthomonas translucens pv. graminis. 2016, University of Zurich, Faculty of Science.

Schöneberg, Torsten; Martin, Charlotte; Wettstein, Felix E; Bucheli, Thomas D; Mascher, Fabio; Bertossa, Mario; Musa, Tomke; Keller, Beat; Vogelgsang, Susanne (2016). Fusarium and mycotoxin spectra in Swiss barley are affected by various cropping techniques. Food Additives & Contaminants. Part A, Chemistry, Analysis, Control, Exposure & Risk Assessment, 33(10):1608-1619.

Errafi, Sanae. Old Compounds but New Functions: Insights into Novel Modes of Action of Arabidopsis Flavonols and the Flavonol Synthase FLS1 in Modulating Cell Growth. 2016, University of Zurich, Faculty of Science.

Burri, Jan T; Hu, Chengzhi; Shamsudhin, Naveen; Wang, Xueqi; Vogler, Hannes; Grossniklaus, Ueli; Nelson, Bradley J (2016). Dual-axis Cellular Force Microscope for mechanical characterization of living plant cells. In: Automation Science and Engineering (CASE), 2016 IEEE International Conference on, Fort Worth, Texas, 21 August 2016 - 25 August 2016. IEEE Xplore, 942-947.

Shamsudhin, Naveen; Atakan, Huseyin Baris; Laubli, Nino; Vogler, Hannes; Hu, Chengzhi; Sebastian, Abu; Grossniklaus, Ueli; Nelson, Bradley J (2016). Probing the micromechanics of the fastest growing plant cell — The pollen tube. In: Engineering in Medicine and Biology Society (EMBC), 2016 IEEE 38th Annual International Conference of the, Lake Buena Vista (Orlando), Florida USA, 16 August 2016 - 20 August 2016. IEEE Xplore, 461-464.

Ben-David, Roi; Parks, Ryan; Dinoor, Amos; Kosman, Evsey; Wicker, Thomas; Keller, Beat; Cowger, Christina (2016). Differentiation among blumeria graminis f. sp.tritici isolates originating from wild versus domesticated triticum species in Israel. Phytopathology, 106(8):861-870.

Hassler, Sebastian; Jung, Benjamin; Lemke, Lilia; Novák, Ondřej; Strnad, Miroslav; Martinoia, Enrico; Neuhaus, H Ekkehard (2016). Function of the Golgi-located phosphate transporter PHT4;6 is critical for senescence-associated processes in Arabidopsis. Journal of Experimental Botany, 67(15):4671-4684.

Krattinger, Simon G; Keller, Beat (2016). Molecular genetics and evolution of disease resistance in cereals. New Phytologist, 212(2):320-332.

Jenul, C. The Role of Nitrosohydroxylamine Secondary Metabolites in Microbial Antagonism and Cell-Cell Communication in Burkholderia cenocepacia H111. 2016, University of Zurich, Faculty of Science.

Schilcher, Katrin. Antibiotic-Mediated Modulation of Staphylococcus aureus Virulence Factors. 2016, University of Zurich, Faculty of Science.

Borghi, Lorenzo; Liu, Guo-Wei; Emonet, Aurélia; Kretzschmar, Tobias; Martinoia, Enrico (2016). The importance of strigolactone transport regulation for symbiotic signaling and shoot branching. Planta, 243(6):1351-1360.

Bombarely, Aureliano; Moser, Michel; Amrad, Avichai; Bao, Manzhu; Bapaume, Laure; Barry, Cornelius S; Bliek, Mattijs; Boersma, Maaike R; Borghi, Lorenzo; Bruggmann, Rémy; Bucher, Marcel; D'Agostino, Nunzio; Davies, Kevin; Druege, Uwe; Dudareva, Natalia; Egea-Cortines, Marcos; Delledonne, Massimo; Fernandez-Pozo, Noe; Franken, Philipp; Grandont, Laurie; Heslop-Harrison, J S; Hintzsche, Jennifer; Johns, Mitrick; Koes, Ronald; Lv, Xiaodan; Lyons, Eric; Malla, Diwa; Martinoia, Enrico; Mattson, Neil S; Morel, Patrice; et al (2016). Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida. Nature Plants, 2(6):16074.

Zürcher, Evelyne. Characterization of the Arabidopsis Family of PURINE PERMEASES as Candidates for a Cytokinin Transport System. 2016, University of Zurich, Faculty of Science.

Roffler, Stefan. On the Impact of Transposon Activity on Genome Evolution. 2016, University of Zurich, Faculty of Science.

Bätz, Ulrike. Structure and Physiological Function of the Vacuolar Anion Channel ALMT9 in Arabidopsis thaliana and Vitis Vinifera. 2016, University of Zurich, Faculty of Science.

Baumgartner, Michael. Experimental Evolution of a Freshwater Isolate with Inducible Aggregate Formation – Genome Streamlining and Variability of Phenotypic Plasticity. 2016, University of Zurich, Faculty of Science.

Faltermann, Susanne. Cellular Uptake and Effects of Cyanobacterial Toxins in Zebrafish, Danio rerio. 2016, University of Zurich, Faculty of Science.

Singla, Jyoti. Genetic Characterization and High Resolution Analysis of Lr75: a Novel Adult Plant Leaf Rust Resistance Gene in Wheat. 2016, University of Zurich, Faculty of Science.

Hwang, Jae-Ung; Song, Won-Yong; Hong, Daewoong; Ko, Donghwi; Yamaoka, Yasuyo; Jang, Sunghoon; Yim, Sojeong; Lee, Eunjung; Khare, Deepa; Kim, Kyungyoon; Palmgren, Michael; Yoon, Hwan Su; Martinoia, Enrico; Lee, Youngsook (2016). Plant ABC transporters enable many unique aspects of a terrestrial plant's lifestyle. Molecular Plant, 9(3):338-355.

Kuhn, Benjamin M; Errafi, Sanae; Bucher, Rahel; Dobrev, Petre; Geisler, Markus; Bigler, Laurent; Zažímalová, Eva; Ringli, Christoph (2016). 7-Rhamnosylated flavonols modulate homeostasis of the plant hormone auxin and affect plant development. Journal of Biological Chemistry, 291(10):5385-5395.

Bheema Lingeswara Reddy, I N; Chandrasekhar, K; Zewdu, Y; Dinoor, A; Keller, B; Ben-David, R (2016). Identification and genetic mapping of PmAF7DS a powdery mildew resistance gene in bread wheat (Triticum aestivum L.). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 129(6):1127-1137.

Bourras, Salim; McNally, Kaitlin E; Müller, Marion C; Wicker, Thomas; Keller, Beat (2016). Avirulence Genes in Cereal Powdery Mildews: The Gene-for-Gene Hypothesis 2.0. Frontiers in Plant Science:7:241.

Lira, Bruno Silvestre; Rosado, Daniele; Almeida, Juliana; de Souza, Amanda Pereira; Buckeridge, Marcos Silveira; Purgatto, Eduardo; Guyer, Luzia; Hörtensteiner, Stefan; Freschi, Luciano; Rossi, Magdalena (2016). Pheophytinase knockdown impacts carbon metabolism and nutraceutical content under normal growth conditions in tomato. Plant & Cell Physiology, 57(3):642-653.

Pedrazzini, Emanuela; Caprera, Andrea; Fojadelli, Ilaria; Stella, Alessandra; Rocchetti, Alessandra; Bassin, Barbara; Martinoia, Enrico; Vitale, Alessandro (2016). The Arabidopsis tonoplast is almost devoid of glycoproteins with complex N-glycans, unlike the rat lysosomal membrane. Journal of Experimental Botany, 67(6):1769-1781.

Krattinger, Simon G; Keller, Beat (2016). Trapping the intruder — immune receptor domain fusions provide new molecular leads for improving disease resistance in plants. Genome Biology, 17(1):1-3.

Horrer, Daniel. Starch Metabolism in Guard Cells of Arabidopsis thaliana. 2016, University of Zurich, Faculty of Science.

Almeida, Juliana; et al; Guyer, Luzia; Hörtensteiner, Stefan; Rossi, Magdalena (2016). Down-regulation of tomato PHYTOL KINASE strongly impairs tocopherol biosynthesis and affects prenyllipid metabolism in an organ-specific manner. Journal of Experimental Botany, 67(3):919-934.

Singla, J; Krattinger, S G (2016). Biotic stress resistance genes in wheat. In: Wrigley, C W; Faubion, J; Corke, H; Seetharaman, K. Encyclopedia of Food Grains. Oxford: Elsevier, 388-392.

Mächler, Elvira; Deiner, Kristy; Spahn, Fabienne; Altermatt, Florian (2016). Fishing in the water: effect of sampled water volume on environmental dna-based detection of macroinvertebrates. Environmental Science & Technology, 50(1):305-312.

Sakuraba, Yasuhito; Han, Su-Hyun; Lee, Sang-Hwa; Hörtensteiner, Stefan; Paek, Nam-Chon (2016). Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Plant Cell Reports, 35(1):155-166.

Medeiros, David B; Martins, Samuel C V; Cavalcanti, João Henrique F; Daloso, Danilo M; Martinoia, Enrico; Nunes-Nesi, Adriano; DaMatta, Fábio M; Fernie, Alisdair R; Araújo, Wagner L (2016). Enhanced photosynthesis and growth in atquac1 knockout mutants are due to altered organic acid accumulation and an increase in both stomatal and mesophyll conductance. Plant Physiology, 170(1):86-101.

Inglis, R Fredrik; Biernaskie, Jay; Gardner, Andy; Kümmerli, Rolf (2016). Presence of a loner strain maintains cooperation and diversity in well-mixed bacterial communities. Proceedings of the Royal Society of London, Series B: Biological Sciences, 283(1822):20152682.

Glover, Natasha M; Antoniadi, Ioanna; George, Gavin M; Götzenberger, Lars; Gutzat, Ruben; Koorem, Kadri; Liancourt, Pierre; Rutowicz, Kinga; Saharan, Krishna; You, Wanhui; Mayer, Philipp (2016). A Pragmatic Approach to Getting Published: 35 Tips for Early Career Researchers. Frontiers in Plant Science:7:610.

Christ, Bastien; Hauenstein, Mareike; Hörtensteiner, Stefan (2016). A liquid chromatography-mass spectrometry platform for the analysis of phyllobilins, the major degradation products of chlorophyll in Arabidopsis thaliana. The Plant Journal, 88(3):505-518.

Müller, Lena M; Lindner, Heike; Pires, Nuno D; Gagliardini, Valeria; Grossniklaus, Ueli (2016). A subunit of the oligosaccharyltransferase complex is required for interspecific gametophyte recognition in Arabidopsis. Nature Communications, 7:10826.

De Sarkar, Suman; Blom, Judith F; Bethuel, Yann; Jüttner, Friedrich; Gademann, Karl (2016). Allelopathic Activity of the Iron Chelator Anachelin - A Molecular Hybrid with a Dual Mode of Action. Helvetica Chimica Acta, 99(10):760-773.

Sedeek, Khalid E M; Whittle, Edward; Guthörl, Daniela; Grossniklaus, Ueli; Shanklin, John; Schlüter, Philipp M (2016). Amino acid change in an Orchid desaturase enables mimicry of the pollinator’s sex pheromone. Current Biology, 26(11):1505-1511.

Schirdewahn, T; Mascher, M; Bucheli, T D; Bertossa, M; Musa, T; Wettstein, F E; Keller, B; Vogelsang, S (2016). Anbaufaktoren beeinflussen Fusarien und Mykotoxine in Schweizer Gerste. Agrarforschung Schweiz, 7(9):372-377.

Vale, Pedro; McNally, Luke; Doeschl-Wilson, Andrea; King, Kayla; Popat, Roman; Domingo-Sananes, Maria; Allen, Judith; Soares, Miguel; Kümmerli, Rolf (2016). Beyond killing: can we find new ways to manage infections? Evolution, Medicine, and Public Health, 2016(1):148-157.

Zürcher, Evelyne. Characterization of the Arabidopsis family of Purine Permeases as candidates for a Cytokinin transport system. 2016, University of Zurich, Faculty of Science.

Faltermann, Susanne; Grundler, Verena; Gademann, Karl; Pernthaler, Jakob; Fent, Karl (2016). Comparative effects of nodularin and microcystin-LR in zebrafish: 2. Uptake and molecular effects in eleuthero-embryos and adult liver with focus on endoplasmic reticulum stress. Aquatic Toxicology, 171:77-87.

Paape, Timothy; Hatakeyama, Masaomi; Shimizu-Inatsugi, Rie; Cereghetti, Teo; Onda, Yoshihiko; Kenta, Tanaka; Sese, Jun; Shimizu, Kentaro K (2016). Conserved but attenuated parental gene expression in allopolyploids: constitutive zinc hyperaccumulation in the allotetraploidArabidopsis kamchatica. Molecular Biology and Evolution:1-44.

Wicker, Thomas; Yu, Yeisoo; Haberer, Georg; Mayer, Klaus F X; Marri, Pradeep Reddy; Rounsley, Steve; Chen, Mingsheng; Zuccolo, Andrea; Panaud, Olivier; Wing, Rod A; Roffler, Stefan (2016). DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses. Nature Communications, 7:12790.

Suppiger, Angela; Aguilar, Claudio; Eberl, Leo (2016). Evidence for the widespread production of DSF family signal molecules by members of the genusBurkholderiaby the aid of novel biosensors. Environmental Microbiology Reports, 8(1):38-44.

Pinto-Carbó, Marta; Sieber, Simon; Dessein, Steven; Wicker, Thomas; Verstraete, Brecht; Gademann, Karl; Eberl, Leo; Carlier, Aurelien (2016). Evidence of horizontal gene transfer between obligate leaf nodule symbionts. The ISME journal, 10(9):2092-2105.

Turnbull, Lynne; Toyofuku, Masanori; Hynen, Amelia L; Kurosawa, Masaharu; Pessi, Gabriella; Petty, Nicola K; Osvath, Sarah R; Cárcamo-Oyarce, Gerardo; Gloag, Erin S; Shimoni, Raz; Omasits, Ulrich; Ito, Satoshi; Yap, Xinhui; Monahan, Leigh G; Cavaliere, Rosalia; Ahrens, Christian H; Charles, Ian G; Nomura, Nobuhiko; Eberl, Leo; Whitchurch, Cynthia B (2016). Explosive cell lysis as a mechanism for the biogenesis of bacterial membrane vesicles and biofilms. Nature Communications, 7:online.

Kamber, Tim; Buchmann, Jan P; Pothier, Joël F; Smits, Theo H M; Wicker, Thomas; Duffy, Brion (2016). Fire blight disease reactome: RNA-seq transcriptional profile of apple host plant defense responses to Erwinia amylovora pathogen infection. Scientific Reports, 6:21600.

Khanday, Imtiyaz; Das, Sanjukta; Chongloi, Grace L; Bansal, Manju; Grossniklaus, Ueli; Vijayraghavan, Usha (2016). Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiology, 172(1):372-388.

Čuklina, Jelena; Hahn, Julia; Imakaev, Maxim; Omasits, Ulrich; Förstner, Konrad U; Ljubimov, Nikolay; Goebel, Melanie; Pessi, Gabriella; Fischer, Hans-Martin; Ahrens, Christian H; Gelfand, Mikhail S; Evguenieva-Hackenberg, Elena (2016). Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis – a rich resource to identify new transcripts, proteins and to study gene regulation. BMC Genomics:17:302.

Florez-Rueda, Ana M; Paris, Margot; Schmidt, Anja; Widmer, Alex; Grossniklaus, Ueli; Städler, Thomas (2016). Genomic Imprinting in the Endosperm Is Systematically Perturbed in Abortive Hybrid Tomato Seeds. Molecular Biology and Evolution, 33(11):2935-2946.

Horňák, Karel; Schmidheiny, Helen; Pernthaler, Jakob (2016). High-throughput determination of dissolved free amino acids in unconcentrated freshwater by ion-pairing liquid chromatography and mass spectrometry. Journal of Chromatography. A, 1440:85-93.

Kotliński, Maciej; Rutowicz, Kinga; Kniżewski, Łukasz; Palusiński, Antoni; Olędzki, Jacek; Fogtman, Anna; Rubel, Tymon; Koblowska, Marta; Dadlez, Michał; Ginalski, Krzysztof; Jerzmanowski, Andrzej (2016). Histone H1 Variants in Arabidopsis Are Subject to Numerous Post-Translational Modifications, Both Conserved and Previously Unknown in Histones, Suggesting Complex Functions of H1 in Plants. PLoS ONE, 11(1):e0147908.

Menardo, Fabrizio; Praz, Coraline R; Wyder, Stefan; Ben-David, Roi; Bourras, Salim; Matsumae, Hiromi; McNally, Kaitlin E; Parlange, Francis; Riba, Andrea; Roffler, Stefan; Schaefer, Luisa K; Shimizu, Kentaro K; Valenti, Luca; Zbinden, Helen; Wicker, Thomas; Keller, Beat (2016). Hybridization of powdery mildew strains gives rise to pathogens on novel agricultural crop species. Nature Genetics, 48(2):201-205.

Florez Rueda, Ana Marcela; Grossniklaus, Ueli; Schmidt, Anja (2016). Laser-assisted Microdissection (LAM) as a tool for transcriptional profiling of individual cell types. Journal of Visualized Experiments (Jove), 111:online.

Rövekamp, Moritz; Bowman, John L; Grossniklaus, Ueli (2016). Marchantia MpRKD Regulates the Gametophyte-Sporophyte Transition by Keeping Egg Cells Quiescent in the Absence of Fertilization. Current Biology, 26(13):1782-1789.

Shi, Gongjun; Zhang, Zengcui; Friesen, Timothy L; Bansal, Urmil; Cloutier, Sylvie; Wicker, Thomas; Rasmussen, Jack B; Faris, Justin D (2016). Marker development, saturation mapping, and high-resolution mapping of the Septoria nodorum blotch susceptibility gene Snn3-B1 in wheat. Molecular Genetics and Genomics, 291(1):107-119.

Shamsudhin, Naveen; Laeubli, Nino; Atakan, Huseyin Baris; Vogler, Hannes; Hu, Chengzhi; Haeberle, Walter; Sebastian, Abu; Grossniklaus, Ueli; Nelson, Bradley J (2016). Massively Parallelized Pollen Tube Guidance and Mechanical Measurements on a Lab-on-a-Chip Platform. PLoS ONE, 11(12):e0168138.

Geisler, Markus; Bailly, Aurélien; Ivanchenko, Maria (2016). Master and servant: Regulation of auxin transporters by FKBPs and cyclophilins. Plant Science, 245:1-10.

Vogler, Hannes; Martinez-Bernardini, Andrea; Grossniklaus, Ueli (2016). Maybe she's NOT the boss: male–female crosstalk during sexual plant reproduction. Genome Biology, 17(1):96.

Eberl, Leo; Vandamme, Peter (2016). Members of the genus Burkholderia: good and bad guys. F1000Research, 5:1007.

Lardi, Martina; Murset, Valérie; Fischer, Hans-Martin; Mesa, Socorro; Ahrens, Christian H; Zamboni, Nicola; Pessi, Gabriella (2016). Metabolomic Profiling of Bradyrhizobium diazoefficiens-Induced Root Nodules Reveals Both Host Plant-Specific and Developmental Signatures. International Journal of Molecular Sciences, 17(6):815.

Stopnisek, Nejc; Zühlke, Daniela; Carlier, Aurélien; Barberán, Albert; Fierer, Noah; Becher, Dörte; Riedel, Katharina; Eberl, Leo; Weisskopf, Laure (2016). Molecular mechanisms underlying the close association between soil Burkholderia and fungi. The ISME journal, 10(1):253-264.

Lüthi, C; Romeis, J; Mauch, F; Grossniklaus, U; Studer, B; Kohler, S (2016). Neue Pflanzenzüchtungstechniken für die Schweizer Landwirtschaft – grosses Potenzial, offene Zukunft. Bern: Akademien der Wisschenschaften Schwei / Swiss Academies Factsheets.

Hedhly, A; Wünsch, A; Kartal, Ö; Herrero, M; Hormaza, J I (2016). Paternal-specific S-allele transmission in sweet cherry (Prunus avium L.): the potential for sexual selection. Journal of Evolutionary Biology, 29(3):490-501.

Shimizu-Inatsugi, Rie; Terada, Aika; Hirose, Kyosuke; Kudoh, Hiroshi; Sese, Jun; Shimizu, Kentaro K (2016). Plant adaptive radiation mediated by polyploid plasticity in transcriptomes. Molecular Ecology:1-35.

Zurcher, E; Liu, J; di Donato, M; Geisler, M; Muller, B (2016). Plant development regulated by cytokinin sinks. Science, 353(6303):1027-1030.

Yankova, Yana; Villiger, Jörg; Pernthaler, Jakob; Schanz, Ferdinand; Posch, Thomas (2016). Prolongation, deepening and warming of the metalimnion change habitat conditions of the harmful filamentous cyanobacterium Planktothrix rubescens in a prealpine lake. Hydrobiologia, 776(1):125-138.

Dirren, Sebastian; Posch, Thomas (2016). Promiscuous and specific bacterial symbiont acquisition in the amoeboid genus Nuclearia (Opisthokonta). FEMS Microbiology Ecology, 92(8):fiw105.

Pires, Nuno D; Bemer, Marian; Müller, Lena M; Baroux, Célia; Spillane, Charles; Grossniklaus, Ueli (2016). Quantitative genetics identifies cryptic genetic variation involved in the paternal regulation of seed development. PLoS Genetics, 12(1):e1005806.

Hedhly, Afif; Vogler, Hannes; Schmid, Marc W; Pazmino, Diana; Gagliardini, Valeria; Santelia, Diana; Grossniklaus, Ueli (2016). Starch Turnover and Metabolism during Flower and Early Embryo Development. Plant Physiology, 172(4):2388-2402.

Zhu, Jinsheng; Bailly, Aurélien; Zwiewka, Marta; Sovero, Valpuri; di Donato, Martin; Ge, Pei; Oehri, Jacqueline; Aryal, Bibek; Hao, Pengchao; Linnert, Miriam; Burgardt, Noelia; Lücke, Christian; Weiwad, Matthias; Michel, Max; Weiergräber, Oliver H; Pollmann, Stephan; Azzarello, Elisa; Mancuso, Stefano; Ferro, Noel; Fukao, Yoichiro; Hoffmann, Celine; Wedlich-Söldner, Roland; Friml, Jiri; Thomas, Clement; Geisler, Markus (2016). TWISTED DWARF1 mediates the action of auxin transport inhibitors on actin cytoskeleton dynamics. Plant Cell, 28(4):930-948.

Suppiger, Angela; Eshwar, Athmanya Konegadde; Stephan, Roger; Kaever, Volkhard; Eberl, Leo; Lehner, Angelika (2016). The DSF type quorum sensing signalling system RpfF/R regulates diverse phenotypes in the opportunistic pathogen Cronobacter. Scientific Reports, 6:18753.

Szklarczyk, Damian; Morris, John H; Cook, Helen; Kuhn, Michael; Wyder, Stefan; Simonovic, Milan; Santos, Alberto; Doncheva, Nadezhda T; Roth, Alexander; Bork, Peer; Jensen, Lars J; von Mering, Christian (2016). The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible. Nucleic Acids Research, 45(D1):D362-D368.

Carlier, Aurelien; Fehr, Linda; Pinto-Carbó, Marta; Schäberle, Till; Reher, Raphael; Dessein, Steven; König, Gabriele; Eberl, Leo (2016). The genome analysis of Candidatus Burkholderia crenata reveals that secondary metabolism may be a key function of the Ardisia crenata leaf nodule symbiosis. Environmental Microbiology, 18(8):2507-2522.

Mathew, Anugraha; Jenul, Christian; Carlier, Aurelien L; Eberl, Leo (2016). The role of siderophores in metal homeostasis of members of the genus B urkholderia. Environmental Microbiology Reports, 8(1):103-109.

Krattinger, Simon G; Sucher, Justine; Selter, Liselotte L; Chauhan, Harsh; Zhou, Bo; Tang, Mingzhi; Upadhyaya, Narayana M; Mieulet, Delphine; Guiderdoni, Emmanuel; Weidenbach, Denise; Schaffrath, Ulrich; Lagudah, Evans S; Keller, Beat (2016). The wheat durable, multipathogen resistance gene Lr34 confers partial blast resistance in rice. Plant Biotechnology Journal, 14(5):1261-1268.

Gossmann, Toni I; Saleh, Dounia; Schmid, Marc W; Spence, Michael A; Schmid, Karl J (2016). Transcriptomes of Plant Gametophytes Have a Higher Proportion of Rapidly Evolving and Young Genes than Sporophytes. Molecular Biology and Evolution, 33(7):1669-1678.

2015

Nestorova, Anna. Towards a function for a novel pollen-specific arabidopsis thaliana protein family DUF1216. 2015, University of Zurich, Faculty of Science.

Roffler, Stefan; Menardo, Fabrizio; Wicker, Thomas (2015). The making of a genomic parasite - the Mothra family sheds light on the evolution of Helitrons in plants. Mobile DNA:6:23.

Süssenbacher, Iris; Hörtensteiner, Stefan; Kräutler, Bernhard (2015). A Dioxobilin-Type Fluorescent Chlorophyll Catabolite as a Transient Early Intermediate of the Dioxobilin-Branch of Chlorophyll Breakdown in Arabidopsis thaliana. Angewandte Chemie Internationale Edition, 54(46):13777-13781.

Song, Won-Yong; Lee, Hyun-Sook; Jin, Sang-Rak; Ko, Donghwi; Martinoia, Enrico; Lee, Youngsook; An, Gynheung; Ahn, Sang-Nag (2015). Rice PCR1 influences grain weight and Zn accumulation in grains. Plant, Cell & Environment, 38(11):2327-2339.

Bao, Kai. Novel organotypic modelling for the study of periodontal infection. 2015, University of Zurich, Faculty of Science.

Neuenschwander, Stefan. Functional Analysis of Pelagic Freshwater Microbes Based on Targeted Enrichment Approaches. 2015, University of Zurich, Faculty of Science.

Borghi, Lorenzo; Kang, Joohyun; Ko, Donghwi; Lee, Youngsook; Martinoia, Enrico (2015). The role of ABCG-type ABC transporters in phytohormone transport. Biochemical Society Transactions, 43(5):924-930.

Boisson-Dernier, Aurélien; Franck, Christina Maria; Lituiev, Dmytro S; Grossniklaus, Ueli (2015). Receptor-like cytoplasmic kinase MARIS functions downstream of CrRLK1L-dependent signaling during tip growth. Proceedings of the National Academy of Sciences of the United States of America, 112(39):12211-12216.

Süssenbacher, Iris; Kreutz, Christoph R; Christ, Bastien; Hörtensteiner, Stefan; Kräutler, Bernhard (2015). Hydroxymethylated Dioxobilins in Senescent Arabidopsis thaliana Leaves: Sign of a Puzzling Biosynthetic Intermezzo of Chlorophyll Breakdown. Chemistry - A European Journal, 21(33):11664-11670.

Xu, Haoxing; Martinoia, Enrico; Szabo, Ildiko (2015). Organellar channels and transporters. Cell Calcium, 58(1):1-10.

Lambers, Hans; Martinoia, Enrico; Renton, Michael (2015). Plant adaptations to severely phosphorus-impoverished soils. Current Opinion in Plant Biology, 25:23-31.

Plaza, Sonia; Weber, Johann; Pajonk, Simone; Thomas, Jérôme; Talke, Ina N; Schellenberg, Maja; Pradervand, Sylvain; Burla, Bo; Geisler, Markus; Martinoia, Enrico; Krämer, Ute (2015). Wounding of Arabidopsis halleri leaves enhances cadmium accumulation that acts as a defense against herbivory. Biometals, 28(3):521-528.

Guyer, Luzia. Characterization of Dephytylation and Dechelation, Two Early Steps of Chlorophyll Breakdown in Leaves and Fruits. 2015, University of Zurich, Faculty of Science.

Schmid, Marc W. Genome-Scale Quantitative Biology of Arabidopsis thaliana. 2015, University of Zurich, Faculty of Science.

Suzuki, Mami; Nakabayashi, Ryo; Ogata, Yoshiyuki; Sakurai, Nozomu; Tokimatsu, Toshiaki; Goto, Susumu; Suzuki, Makoto; Jasinski, Michal; Martinoia, Enrico; Otagaki, Shungo; Matsumoto, Shogo; Saito, Kazuki; Shiratake, Katsuhiro (2015). Multiomics in grape berry skin revealed specific induction of the stilbene synthetic pathway by ultraviolet-C irradiation. Plant Physiology, 168(1):47-59.

Singh, Amit Kumar; Bashir, Tufail; Sailer, Christian; Gurumoorthy, Viswanathan; Ramakrishnan, Anantha Maharasi; Dhanapal, Shanmuhapreya; Grossniklaus, Ueli; Baskar, Ramamurthy (2015). Parental age affects somatic mutation rates in the progeny of flowering plants. Plant Physiology, 168(1):247-257.

Lindner, Heike; Kessler, Sharon A; Müller, Lena M; Shimosato-Asano, Hiroko; Boisson-Dernier, Aurélien; Grossniklaus, Ueli (2015). TURAN and EVAN mediate pollen tube reception in Arabidopsis Synergids through protein glycosylation. PLoS Biology, 13(4):e1002139.

Mathew, Anugraha. Iron transport strategies of the genus Burkholderia. 2015, University of Zurich, Faculty of Science.

Sasse, Joëlle; Simon, Sibu; Gübeli, Christian; Liu, Guo-Wei; Cheng, Xi; Friml, Jiří; Bouwmeester, Harro; Martinoia, Enrico; Borghi, Lorenzo (2015). Asymmetric localizations of the ABC transporter PaPDR1 trace paths of directional strigolactone transport. Current Biology, 25(5):647-655.

Hu, Xueyun; Makita, Satoru; Schelbert, Silvia; Sano, Shinsuke; Ochiai, Masanori; Tsuchiya, Tohru; Hasegawa, Shigeaki F; Hörtensteiner, Stefan; Tanaka, Ayumi; Tanaka, Ryouichi (2015). Reexamination of chlorophyllase function implies its involvement in defense against chewing herbivores. Plant Physiology, 167(3):660-670.

Eisenach, Cornelia; Francisco, Rita; Martinoia, Enrico (2015). Plant vacuoles. Current Biology, 25(4):R136-R137.

Schmidt, Anja; Schmid, Marc W; Grossniklaus, Ueli (2015). Plant germline formation: common concepts and developmental flexibility in sexual and asexual reproduction. Development, 142(2):229-241.

Rutowicz, Kinga; Puzio, Marcin; Halibart-Puzio, Joanna; et al (2015). A specialized histone H1 variant is required for adaptive responses to complex abiotic stress and related DNA methylation in Arabidopsis. Plant Physiology, 169(3):2080-2101.

Kang, Joohyun; Yim, Sojeong; Choi, Hyunju; Kim, Areum; Lee, Keun Pyo; Lopez-Molina, Luis; Martinoia, Enrico; Lee, Youngsook (2015). Abscisic acid transporters cooperate to control seed germination. Nature Communications, 6:8113.

Draeger, Christian; Ndinyanka Fabrice, Tohnyui; Gineau, Emilie; Mouille, Grégory; Kuhn, Benjamin M; Moller, Isabel; Abdou, Marie-Therese; Frey, Beat; Pauly, Markus; Bacic, Antony; Ringli, Christoph (2015). Arabidopsis leucine-rich repeat extensin (LRX) proteins modify cell wall composition and influence plant growth. BMC Plant Biology, 15(155):online.

Takeuchi, Yayoi; Chaffron, Samuel; Salcher, Michaela M; Shimizu-Inatsugi, Rie; Kobayashi, Masaki J; Diway, Bibian; von Mering, Christian; Pernthaler, Jakob; Shimizu, Kentaro K (2015). Bacterial diversity and composition in the fluid of pitcher plants of the genus Nepenthes. Systematic and Applied Microbiology, 38(5):330-339.

Kümmerli, Rolf (2015). Cheat invasion causes bacterial trait loss in lung infections. Proceedings of the National Academy of Sciences of the United States of America, 112(34):10577-10578.

Baroux, Célia; Autran, Daphné (2015). Chromatin dynamics during cellular differentiation in the female reproductive lineage of flowering plants. The Plant Journal, 83(1):160-176.

She, Wenjing; Baroux, Célia (2015). Chromatin dynamics in pollen mother cells underpin a common scenario at the somatic-to-reproductive fate transition of both the male and female lineages in Arabidopsis. Frontiers in Plant Science, 6:294.

Kümmerli, Rolf; Santorelli, L A; Granato, E T; Dumas, Z; Dobay, A; Griffin, A S; West, S A (2015). Co-evolutionary dynamics between public good producers and cheats in the bacterium Pseudomonas aeruginosa. Journal of Evolutionary Biology, 28(12):2264-2274.

Coci, Manuela; Odermatt, Nina; Salcher, Michaela M; Pernthaler, Jakob; Corno, Gianluca (2015). Ecology and distribution of thaumarchaea in the deep hypolimnion of Lake Maggiore. Archaea, 2015:590434.

Stockenhuber, Reinhold; Zoller, Stefan; Shimizu-Inatsugi, Rie; Gugerli, Felix; Shimizu, Kentaro K; Widmer, Alex; Fischer, Martin C (2015). Efficient detection of novel nuclear markers for brassicaceae by transcriptome sequencing. PLoS ONE, 10(6):e0128181.

Amselem, Joelle; Vigouroux, Marielle; Oberhaensli, Simone; Brown, James K M; Bindschedler, Laurence V; Skamnioti, Pari; Wicker, Thomas; Spanu, Pietro D; Quesneville, Hadi; Sacristán, Soledad (2015). Evolution of the EKA family of powdery mildew avirulence-effector genes from the ORF 1 of a LINE retrotransposon. BMC Genomics, 16(917):online.

Pourkheirandish, Mohammad; Hensel, Goetz; Kilian, Benjamin; Senthil, Natesan; Chen, Guoxiong; Sameri, Mohammad; Azhaguvel, Perumal; Sakuma, Shun; Dhanagond, Sidram; Sharma, Rajiv; Mascher, Martin; Himmelbach, Axel; Gottwald, Sven; Nair, Sudha K; Tagiri, Akemi; Yukuhiro, Fumiko; Nagamura, Yoshiaki; Kanamori, Hiroyuki; Matsumoto, Takashi; Willcox, George; Middleton, Christopher P; Wicker, Thomas; Walther, Alexander; Waugh, Robbie; Fincher, Geoffrey B; Stein, Nils; Kumlehn, Jochen; Sato, Kazuhiro; Komatsuda, Takao (2015). Evolution of the Grain Dispersal System in Barley. Cell, 162(3):527-539.

Ross-Gillespie, A; Dumas, Z; Kümmerli, Rolf (2015). Evolutionary dynamics of interlinked public goods traits: an experimental study of siderophore production in Pseudomonas aeruginosa. Journal of Evolutionary Biology, 28(1):29-39.

Chhuneja, Parveen; Yadav, Bharat; Stirnweis, Daniel; Hurni, Severine; Kaur, Satinder; Elkot, Ahmed Fawzy; Keller, Beat; Wicker, Thomas; Sehgal, Sunish; Gill, Bikram S; Singh, Kuldeep (2015). Fine mapping of powdery mildew resistance genes PmTb7A.1 and PmTb7A.2 in Triticum boeoticum (Boiss.) using the shotgun sequence assembly of chromosome 7AL. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 128(10):2099-2111.

Neuenschwander, Stefan M; Salcher, Michaela M; Pernthaler, Jakob (2015). Fluorescence in situ hybridization and sequential catalyzed reporter deposition (2C-FISH) for the flow cytometric sorting of freshwater ultramicrobacteria. Frontiers in Microbiology, 6:247.

Parlange, Francis; Roffler, Stefan; Menardo, Fabrizio; Ben-David, Roi; Bourras, Salim; McNally, Kaitlin E; Oberhaensli, Simone; Stirnweis, Daniel; Buchmann, Gabriele; Wicker, Thomas; Keller, Beat (2015). Genetic and molecular characterization of a locus involved in avirulence of Blumeria graminis f. sp. tritici on wheat Pm3 resistance alleles. Fungal Genetics and Biology, 82:181-192.

Roffler, Stefan; Wicker, Thomas (2015). Genome-wide comparison of Asian and African rice reveals high recent activity of DNA transposons. Mobile DNA, 6(8):online.

Schmid, Marc W; Grob, Stefan; Grossniklaus, Ueli (2015). HiCdat: a fast and easy-to-use Hi-C data analysis tool. BMC Bioinformatics, 16:277.

Dubern, Jean-Frédéric; Cigana, Cristina; De Simone, Maura; Lazenby, James; Juhas, Mario; Schwager, Stephan; Bianconi, Irene; Döring, Gerd; Eberl, Leo; Williams, Paul; Bragonzi, Alessandra; Cámara, Miguel (2015). Integrated whole-genome screening forPseudomonas aeruginosavirulence genes using multiple disease models reveals that pathogenicity is host specific. Environmental Microbiology, 17(11):4379-4393.

Salcher, Michaela M; Ewert, Claudia; Šimek, Karel; Kasalický, Vojtěch; Posch, Thomas (2015). Interspecific competition and protistan grazing affect the coexistence of freshwater betaproteobacterial strains. FEMS Microbiology Ecology, 92(2):fiv156.

Sieber, Simon; Carlier, Aurélien; Neuburger, Markus; Grabenweger, Giselher; Eberl, Leo; Gademann, Karl (2015). Isolation and total synthesis of kirkamide, an aminocyclitol from an obligate leaf nodule symbiont. Angewandte Chemie Internationale Edition, 54(27):7968-7970.

Vermeer, Joop E M; Geldner, Niko (2015). Lateral root initiation in Arabidopsis thaliana: a force awakens. F1000 Prime Reports, 7:32.

Elkot, Ahmed Fawzy Abdelnaby; Chhuneja, Parveen; Kaur, Satinder; Saluja, Manny; Keller, Beat; Singh, Kuldeep (2015). Marker assisted transfer of two powdery mildew resistance genes PmTb7A.1 and PmTb7A.2 from Triticum boeoticum (Boiss.) to Triticum aestivum (L.). PLoS ONE, 10(6):e0128297.

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