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2022

Doerken, Sam; Metsini, Aliki; Buyet, Sabina; Wolfensberger, Aline; Zingg, Walter; Wolkewitz, Martin (2022). Estimating incidence and attributable length of stay of healthcare-associated infections-Modeling the Swiss point-prevalence survey. Infection Control and Hospital Epidemiology, 43(8):1022-1031.

Prinz, Julia; Schmid, Bettina; Zbinden, Reinhard; Zingg, Patrick O; Uçkay, Ilker; Achermann, Yvonne; Bosshard, Philipp P (2022). Fast and Sensitive Multiplex Real-Time Quantitative PCR to Detect Cutibacterium Periprosthetic Joint Infections. Journal of Molecular Diagnostics, 24(6):666-673.

Duffy, Fergal J; Olson, Gregory S; Gold, Elizabeth S; Jahn, Ana; Aderem, Alan; Aitchison, John; Rothchild, Alissa C; Diercks, Alan H; Nemeth, Johannes (2022). A contained Mycobacterium tuberculosis mouse infection model predicts active disease and containment in humans. Journal of Infectious Diseases, 225(10):1832-1840.

Balakrishna, Suraj; Wolfensberger, Aline; Kachalov, Viacheslav; Roth, Jan A; Kusejko, Katharina; Scherrer, Alexandra U; Furrer, Hansjakob; Hauser, Christoph; Calmy, Alexandra; Cavassini, Matthias; Schmid, Patrick; Bernasconi, Enos; Battegay, Manuel; Günthard, Huldrych F; Kouyos, Roger D (2022). Decreasing incidence and determinants of Bacterial Pneumonia in people with HIV: The Swiss HIV Cohort Study. Journal of Infectious Diseases, 225(9):1592-1600.

Schoepf, Isabella C; Thorball, Christian W; Ledergerber, Bruno; Kootstra, Neeltje A; Reiss, Peter; Raffenberg, Marieke; Engel, Tanja; Braun, Dominique L; Hasse, Barbara; Thurnheer, Christine; Marzolini, Catia; Seneghini, Marco; Bernasconi, Enos; Cavassini, Matthias; Buvelot, Hélène; Arribas, José R; Kouyos, Roger D; Fellay, Jacques; Günthard, Huldrych F; Tarr, Philip E; Swiss HIV Cohort Study (2022). Telomere Length Declines In Persons Living With HIV Before Antiretroviral Therapy Start But Not After Viral Suppression: A Longitudinal Study Over >17 Years. Journal of Infectious Diseases, 225(9):1581-1591.

TICO (2022). Efficacy and safety of two neutralising monoclonal antibody therapies, sotrovimab and BRII-196 plus BRII-198, for adults hospitalised with COVID-19 (TICO): a randomised controlled trial. Lancet Infectious Diseases, 22(5):622-635.

Nguyen, Huyen; Hampel, Benjamin; Nuñez, David Garcia; Battegay, Manuel; Hachfeld, Anna; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Vernazza, Pietro; Fellay, Jacques; Rudolph, Hannes; Huber, Michael; Leuzinger, Karoline; Perreau, Matthieu; Scherrer, Alexandra; Ramette, Alban Nicolas; Yerly, Sabine; Günthard, Huldrych F; Kouyos, Roger D; Kusejko, Katharina; Swiss HIV Cohort Study (2022). Identifying and Characterizing Trans women in the Swiss HIV Cohort Study as an Epidemiologically Distinct Risk Group. Clinical Infectious Diseases, 74(8):1468-1475.

Delabays, Benoît; Cavassini, Matthias; Damas, Jose; Beuret, Hadrien; Calmy, Alexandra; Hasse, Barbara; Bucher, Heiner C; Frischknecht, Manuel; Müller, Olivier; Méan, Marie; Vollenweider, Peter; Marques-Vidal, Pedro; Vaucher, Julien (2022). Cardiovascular risk assessment in people living with HIV compared to the general population. European Journal of Preventive Cardiology, 29(4):689-699.

Tamò, Raphaël; Turk, Teja; Böni, Jürg; Kouyos, Roger D; Schmutz, Stefan; Huber, Michael; Shah, Cyril; Bischoff-Ferrari, Heike A; Distler, Oliver; Battegay, Edouard; Giovanoli, Pietro; Guckenberger, Matthias; Kohler, Malcolm; Müller, Rouven; Petry, Heidi; Ruschitzka, Frank; McGeer, Allison; Sax, Hugo; Weber, Rainer; Trkola, Alexandra; Kuster, Stefan P (2022). Secondary attack rates from asymptomatic and symptomatic influenza virus shedders in hospitals: Results from the TransFLUas influenza transmission study. Infection Control and Hospital Epidemiology, 43(3):312-318.

Scherrer, Alexandra U; Traytel, Anna; Braun, Dominique L; Calmy, Alexandra; Battegay, Manuel; Cavassini, Matthias; Furrer, Hansjakob; Schmid, Patrick; Bernasconi, Enos; Stoeckle, Marcel; Kahlert, Christian; Trkola, Alexandra; Kouyos, Roger D; Tarr, Philip; Marzolini, Catia; Wandeler, Gilles; Fellay, Jacques; Bucher, Heiner; Yerly, Sabine; Suter, Franziska; Hirsch, Hans; Huber, Michael; Dollenmaier, Günter; Perreau, Matthieu; Martinetti, Gladys; Rauch, Andri; Günthard, Huldrych F; Swiss HIV Cohort Study (SHCS) (2022). Cohort Profile Update: The Swiss HIV Cohort Study (SHCS). International Journal of Epidemiology, 51(1):33-34j.

Jakeman, Bernadette; Scherrer, Alexandra; Battegay, Manuel; Gunthard, Huldrych F; Hachfeld, Anna; Calmy, Alexandra; Schmid, Patrick; Bernasconi, Enos; Cavassini, Matthias; Marzolini, Catia (2022). Anticholinergic medication use in elderly people living with HIV and self-reported neurocognitive impairment: a prospective cohort study. Journal of Antimicrobial Chemotherapy, 77(2):492-499.

Moldt, Brian; Günthard, Huldrych F; Workowski, Kimberly A; Little, Susan J; Eron, Joseph J; Overton, Edgar T; Lehmann, Clara; Rokx, Casper; Kozal, Michael J; Gandhi, Rajesh T; Braun, Dominique L; Parvangada, Aiyappa; Li, Jiani; Martin, Ross; Selzer, Lisa; Cox, Stephanie; Margot, Nicolas; Liu, Hui; Slamowitz, Debbie; Makadzange, Tariro; Collins, Sean E; Geleziunas, Romas; Callebaut, Christian (2022). Evaluation of HIV-1 reservoir size and broadly neutralizing antibody susceptibility in acute antiretroviral therapy-treated individuals. AIDS, 36(2):205-214.

Hickmann, Anne-Katrin; Bratelj, Denis; Pirvu, Tatiana; Loibl, Markus; Mannion, Anne F; O'Riordan, Dave; Fekete, Tamás; Jeszenszky, Deszö; Eberhard, Nadia; Vogt, Marku; Achermann, Yvonne; Haschtmann, Daniel (2022). Management and outcome of spinal implant-associated surgical site infections in patients with posterior instrumentation: analysis of 176 cases. European Spine Journal, 31(2):489-499.

Hovaguimian, Frédérique; Martin, E; Reinacher, M; Rasi, M; Schmidt, A J; Bernasconi, E; Boffi El Amari, E; Braun, D L; Calmy, A; Darling, K; Christinet, V; Depmeier, C; Hauser, C; Läuchli, S; Notter, J; Stoeckle, M; Surial, B; Vernazza, P; Bruggmann, P; Tarr, P; Haerry, D; Bize, R; Low, N; Lehner, A; Böni, J; Kouyos, R D; Fehr, J S; Hampel, B (2022). Participation, retention and uptake in a multicentre pre-exposure prophylaxis cohort using online, smartphone-compatible data collection. HIV Medicine, 23(2):146-158.

van den Bogaart, Lorena; Lang, Brian M; Neofytos, Dionysios; Egli, Adrian; Walti, Laura N; Boggian, Katia; Garzoni, Christian; Berger, Christoph; Pascual, Manuel; van Delden, Christian; Mueller, Nicolas J; Manuel, Oriol; Mombelli, Matteo; Swiss Transplant Cohort Study (2022). Epidemiology and outcomes of medically attended and microbiologically confirmed bacterial foodborne infections in solid organ transplant recipients. American Journal of Transplantation, 22(1):199-209.

Herren, Sebastian C; Huemer, Markus; Acevedo, Claudio T; Gómez-Mejia, Alejandro; Andreoni, Federica; Mairpady Shambat, Srikanth; Hasse, Barbara; Zbinden, Reinhard; Brugger, Silvio D; Zinkernagel, Annelies S (2022). Assessing Antibiotic Tolerance of Staphylococcus aureus Derived Directly from Patients by the Replica Plating Tolerance Isolation System (REPTIS). Antimicrobial Agents and Chemotherapy, 66(1):e0096721.

Duran Ramirez, Jessy J; Ballouz, Tala; Nguyen, Huyen; Kusejko, Katharina; Chaudron, Sandra E; Huber, Michael; Hirsch, Hans H; Perreau, Matthieu; Ramette, Alban; Yerly, Sabine; Cavassini, Matthias; Stöckle, Marcel; Furrer, Hansjakob; Vernazza, Pietro; Bernasconi, Enos; Günthard, Huldrych F; Kouyos, Roger D; Swiss HIV Cohort Study (2022). Increasing Frequency and Transmission of HIV-1 Non-B Subtypes among Men Who Have Sex with Men in the Swiss HIV Cohort Study. Journal of Infectious Diseases, 225(2):306-316.

Mairpady Shambat, Srikanth; Gómez-Mejia, Alejandro; Schweizer, Tiziano A; Huemer, Markus; Chang, Chun-Chi; Acevedo, Claudio; Bergada-Pijuan, Judith; Vulin, Clément; Hofmaenner, Daniel A; Scheier, Thomas C; Hertegonne, Sanne; Parietti, Elena; Miroshnikova, Nataliya; Wendel Garcia, Pedro D; Hilty, Matthias P; Buehler, Philipp Karl; Schuepbach, Reto A; Brugger, Silvio D; Zinkernagel, Annelies S (2022). Hyperinflammatory environment drives dysfunctional myeloid cell effector response to bacterial challenge in COVID-19. PLoS Pathogens, 18:e1010176.

Hachfeld, Anna; Atkinson, Andrew; Calmy, Alexandra; de Tejada, Begoña Martinez; Hasse, Barbara; Paioni, Paolo; Kahlert, Christian R; Boillat-Blanco, Noémie; Stoeckle, Marcel; Aebi-Popp, Karoline; Swiss HIV Cohort Study; the Swiss Mother; Child HIV Cohort Study (MoCHiV) (2022). Decrease of condom use in heterosexual couples and its impact on pregnancy rates: the Swiss HIV Cohort Study (SHCS). HIV Medicine, 23(1):60-69.

2021

Chok, Lionel; Kusejko, Katharina; Eberhard, Nadia; Chaudron, Sandra E; Saleschus, Dirk; Kocher, Claudine; Kouyos, Roger D; Weber, Rainer; Kuster, Stefan P (2021). Impact of an electronic alert on prescription patterns of meropenem, voriconazole and caspofungin. BMC Infectious Diseases, 21:1263.

Stampf, Susanne; Mueller, Nicolas J; van Delden, Christian; Pascual, Manuel; Manuel, Oriol; Banz, Vanessa; Binet, Isabelle; De Geest, Sabina; Bochud, Pierre-Yves; Leichtle, Alexander; Schaub, Stefan; Steiger, Jürg; Koller, Michael (2021). Cohort profile: The Swiss Transplant Cohort Study (STCS): A nationwide longitudinal cohort study of all solid organ recipients in Switzerland. BMJ Open, 11(12):e051176.

Gabrielaite, Migle; Bennedbæk, Marc; Zucco, Adrian G; Ekenberg, Christina; Murray, Daniel D; Kan, Virginia L; Touloumi, Giota; Vandekerckhove, Linos; Turner, Dan; Neaton, James; Lane, H Clifford; Safo, Sandra; Arenas-Pinto, Alejandro; Polizzotto, Mark N; Günthard, Huldrych F; Lundgren, Jens D; Marvig, Rasmus L (2021). Human immunotypes impose selection on viral genotypes through viral epitope specificity. Journal of Infectious Diseases, 224(12):2053-2063.

Abela, Irene A; Pasin, Chloé; Schwarzmüller, Magdalena; Epp, Selina; Sickmann, Michèle E; Schanz, Merle M; Rusert, Peter; Weber, Jacqueline; Schmutz, Stefan; Audigé, Annette; Maliqi, Liridona; Hunziker, Annika; Hesselman, Maria C; Niklaus, Cyrille R; Gottschalk, Jochen; Schindler, Eméry; Wepf, Alexander; Karrer, Urs; Wolfensberger, Aline; Rampini, Silvana K; Meyer Sauteur, Patrick M; Berger, Christoph; Huber, Michael; Böni, Jürg; Braun, Dominique L; Marconato, Maddalena; Manz, Markus G; Frey, Beat M; Günthard, Huldrych F; Kouyos, Roger D; et al (2021). Multifactorial seroprofiling dissects the contribution of pre-existing human coronaviruses responses to SARS-CoV-2 immunity. Nature Communications, 12:6703.

Damas, José; Ledergerber, Bruno; Nadin, Isaure; Tarr, Philip E; Stoeckle, Marcel; Kunze, Ursi; Hauser, Christoph; Gutbrod, Klemens; Calmy, Alexandra; Assal, Frédéric; Schmid, Patrick; Hundsberger, Thomas; di Benedetto, Caroline; Rossi, Stefania; Hasse, Barbara; Schlosser, Ladina; Pasquier, Renaud du; Darling, Katharine E A; Cavassini, Matthias (2021). Neurocognitive course at two-year follow-up in the neurocognitive assessment in the metabolic and aging cohort (NAMACO) study. AIDS, 35(15):2469-2480.

Leierer, Gisela; Rieger, Armin; Schmied, Brigitte; Sarcletti, Mario; Öllinger, Angela; Wallner, Elmar; Egle, Alexander; Kanatschnig, Manfred; Zoufaly, Alexander; Atzl, Michele; Rappold, Michaela; El-Khatib, Ziad; Ledergerber, Bruno; Zangerle, Robert (2021). A Lower CD4 Count Predicts Most Causes of Death except Cardiovascular Deaths. The Austrian HIV Cohort Study. International Journal of Environmental Research and Public Health, 18(23):12532.

Abongomera, George; Koller, Maurice; Musaazi, Joseph; Lamorde, Mohammed; Kaelin, Marisa; Tasimwa, Hannington B; Eberhard, Nadia; Hongler, Jan; Haller, Sabine; Kambugu, Andrew; Castelnuovo, Barbara; Fehr, Jan (2021). Spectrum of antibiotic resistance in UTI caused by Escherichia coli among HIV-infected patients in Uganda: a cross-sectional study. BMC Infectious Diseases, 21:1179.

Friedrich, Nikolas; Stiegeler, Emanuel; Glögl, Matthias; Lemmin, Thomas; Hansen, Simon; Kadelka, Claus; Wu, Yufan; Ernst, Patrick; Maliqi, Liridona; Foulkes, Caio; Morin, Mylène; Eroglu, Mustafa; Liechti, Thomas; Ivan, Branislav; Reinberg, Thomas; Schaefer, Jonas V; Karakus, Umut; Ursprung, Stephan; Mann, Axel; Rusert, Peter; Kouyos, Roger D; Robinson, John A; Günthard, Huldrych F; Plückthun, Andreas; Trkola, Alexandra (2021). Distinct conformations of the HIV-1 V3 loop crown are targetable for broad neutralization. Nature Communications, 12:6705.

Ulyte, Agne; Radtke, Thomas; Abela, Irene A; Haile, Sarah R; Ammann, Priska; Berger, Christoph; Trkola, Alexandra; Fehr, Jan; Puhan, Milo A; Kriemler, Susi (2021). Evolution of SARS-CoV-2 seroprevalence and clusters in school children from June 2020 to April 2021: prospective cohort study Ciao Corona. Swiss Medical Weekly, 151:w30092.

Babic, Daniela; Hämmerli, Ramona; Santos Lopes, Bruno; Attenhofer Jost, Christine; Tobler, Daniel; Schwerzmann, Markus; Hasse, Barbara; Bonassin Tempesta, Francesca; Greutmann, Matthias (2021). Impact of a structured patient education programme on early diagnosis of prosthetic pulmonary valve endocarditis. Cardiology in the Young:Epub ahead of print.

Bansi-Matharu, Loveleen; Phillips, Andrew; Oprea, Cristiana; Grabmeier-Pfistershammer, Katharina; Günthard, Huldrych F; et al; Braun, Dominique L (2021). Contemporary antiretrovirals and body-mass index: a prospective study of the RESPOND cohort consortium. The lancet. HIV., 8(11):e711-e722.

Schoepf, Isabella C; Thorball, Christian W; Ledergerber, Bruno; Engel, Tanja; Raffenberg, Marieke; Kootstra, Neeltje A; Reiss, Peter; Hasse, Barbara; Marzolini, Catia; Thurnheer, Christine; Seneghini, Marco; Bernasconi, Enos; Cavassini, Matthias; Buvelot, Hélène; Kouyos, Roger; Günthard, Huldrych F; Fellay, Jacques; Tarr, Philip E; Swiss HIV Cohort Study (2021). Coronary Artery Disease-associated and Longevity-associated Polygenic Risk Scores for Prediction of Coronary Artery Disease Events in Persons Living with HIV: The Swiss HIV Cohort Study. Clinical Infectious Diseases, 73(9):1597-1604.

Hasan Ali, Omar; Bomze, David; Risch, Lorenz; Brugger, Silvio D; Paprotny, Matthias; Weber, Myriam; Thiel, Sarah; Kern, Lukas; Albrich, Werner C; Kohler, Philipp; Kahlert, Christian R; Vernazza, Pietro; Bühler, Philipp K; Schüpbach, Reto A; Gómez-Mejia, Alejandro; Popa, Alexandra M; Bergthaler, Andreas; Penninger, Josef M; Flatz, Lukas (2021). Severe Coronavirus Disease 2019 (COVID-19) is Associated With Elevated Serum Immunoglobulin (Ig) A and Antiphospholipid IgA Antibodies. Clinical Infectious Diseases, 73(9):e2869-e2874.

Buetti, Niccolò; Abbas, Mohamed; Pittet, Didier; de Kraker, Marlieke E A; Teixeira, Daniel; Chraiti, Marie-Noëlle; Sauvan, Valérie; Sauser, Julien; Harbarth, Stephan; Zingg, Walter (2021). Comparison of Routine Replacement With Clinically Indicated Replacement of Peripheral Intravenous Catheters. JAMA Internal Medicine, 181(11):1471-1478.

Courlet, Perrine; Barbieux, Charlotte; Sculier, Delphine; Wandeler, Gilles; Stoeckle, Marcel; Bernasconi, Enos; Braun, Dominique; Vernazza, Pietro; Cavassini, Matthias; Marinosci, Annalisa; Smit, Mikaela; Günthard, Huldrych F; Schmid, Patrick; Limacher, Andreas; Guidi, Monia; Alves Saldanha, Susana; Decosterd, Laurent Arthur; Calmy, Alexandra (2021). Pharmacokinetic parameters and weight change in HIV patients newly switched to dolutegravir-based regimens in SIMPL'HIV clinical trial. British Journal of Clinical Pharmacology, 87(11):4455-4460.

Abbas, M; Robalo Nunes, T; Cori, A; Cordey, S; Laubscher, F; Baggio, S; Jombart, T; Iten, A; Vieux, L; Teixeira, D; Perez, M; Pittet, D; Frangos, E; Graf, C E; Zingg, W; Harbarth, S (2021). Explosive nosocomial outbreak of SARS-CoV-2 in a rehabilitation clinic: the limits of genomics for outbreak reconstruction. Journal of Hospital Infection, 117:124-134.

Schreiber, Peter W; Kohl, Thomas A; Kuster, Stefan P; Niemann, Stefan; Sax, Hugo (2021). The global outbreak of Mycobacterium chimaera infections in cardiac surgery-a systematic review of whole-genome sequencing studies and joint analysis. Clinical Microbiology and Infection, 27(11):1613-1620.

Balakrishna, Suraj; Salazar-Vizcaya, Luisa; Schmidt, Axel J; Kachalov, Viacheslav; Kusejko, Katharina; Thurnheer, Maria Christine; Roth, Jan A; Nicca, Dunja; Cavassini, Matthias; Battegay, Manuel; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F; Rauch, Andri; Kouyos, Roger D; Swiss HIV Cohort Study (2021). Assessing the drivers of syphilis among men who have sex with men in Switzerland reveals a key impact of screening frequency: A modelling study. PLoS Computational Biology, 17(10):e1009529.

Flores Ramos, Stephany; Brugger, Silvio D; Escapa, Isabel Fernandez; Skeete, Chelsey A; Cotton, Sean L; Eslami, Sara M; Gao, Wei; Bomar, Lindsey; Tran, Tommy H; Jones, Dakota S; Minot, Samuel; Roberts, Richard J; Johnston, Christopher D; Lemon, Katherine P (2021). Genomic Stability and Genetic Defense Systems in Dolosigranulum pigrum, a Candidate Beneficial Bacterium from the Human Microbiome. mSystems, 6(5):e0042521.

Herren, Sebastian C. Assessing Antibiotic Tolerance of Staphylococcus aureus Derived Directly from Patients by the Replica Plating Tolerance Isolation System (REPTIS). 2021, University of Zurich, Faculty of Medicine.

Speich, Benjamin; Chammartin, Frédérique; Smith, Daniel; Stoeckle, Marcel P; Amico, Patrizia; Eichenberger, Anna L; Hasse, Barbara; Schuurmans, Macé M; Müller, Thomas; Tamm, Michael; Dickenmann, Michael; Abela, Irene A; Trkola, Alexandra; Hirsch, Hans H; Manuel, Oriol; Cavassini, Matthias; Hemkens, Lars G; Briel, Matthias; Mueller, Nicolas J; Rauch, Andri; Günthard, Huldrych F; Koller, Michael T; Bucher, Heiner C; Kusejko, Katharina (2021). A trial platform to assess approved SARS-CoV-2 vaccines in immunocompromised patients: first sub-protocol for a pilot trial comparing the mRNA vaccines Comirnaty® and COVID-19 mRNA Vaccine Moderna®. Trials, 22:724.

Roth, Jan A; Radevski, Gorjan; Marzolini, Catia; Rauch, Andri; Günthard, Huldrych F; Kouyos, Roger D; Fux, Christoph A; Scherrer, Alexandra U; Calmy, Alexandra; Cavassini, Matthias; Kahlert, Christian R; Bernasconi, Enos; Bogojeska, Jasmina; Battegay, Manuel (2021). Cohort-derived machine learning models for individual prediction of chronic kidney disease in people living with HIV: a prospective multicentre cohort study. Journal of Infectious Diseases, 224(7):1198-1208.

Peters, Alexandra; Lotfinejad, Nasim; Palomo, Rafael; Zingg, Walter; Parneix, Pierre; Ney, Hervé; Pittet, Didier (2021). Decontaminating N95/FFP2 masks for reuse during the COVID-19 epidemic: a systematic review. Antimicrobial Resistance and Infection Control, 10:144.

Riou, Julien; Dupont, Carole; Bertagnolio, Silvia; Gupta, Ravindra K; Kouyos, Roger D; Egger, Matthias; Althaus, Christian L (2021). Drivers of HIV-1 drug resistance to non-nucleoside reverse-transcriptase inhibitors (NNRTIs) in nine southern African countries: a modelling study. BMC Infectious Diseases, 21:1042.

Braun, Dominique L; Hampel, Benjamin; Ledergerber, Bruno; Grube, Christina; Nguyen, Huyen; Künzler-Heule, Patrizia; Shah, Cyril; Salazar-Vizcaya, Luisa; Conen, Anna; Flepp, Markus; Stöckle, Marcel; Béguelin, Charles; Schmid, Patrick; Rougemont, Mathieu; Delaloye, Julie; Bernasconi, Enos; Nicca, Dunja; Böni, Jürg; Rauch, Andri; Kouyos, Roger D; Günthard, Huldrych F; Fehr, Jan S (2021). A treatment as prevention trial to eliminate hepatitis C among men who have sex with men living with HIV in the Swiss HIV Cohort Study. Clinical Infectious Diseases, 73(7):e2194-e2202.

Greenberg, Lauren; Ryom, Lene; Neesgaard, Bastian; Wandeler, Gilles; Staub, Therese; Gisinger, Martin; Skoll, Michael; Günthard, Huldrych F; et al (2021). Clinical outcomes of two-drug regimens vs. three-drug regimens in antiretroviral treatment-experienced people living with HIV. Clinical Infectious Diseases, 73(7):e2323-e2333.

Pyngottu, Ashima; Scherrer, Alexandra U; Kouyos, Roger; Huber, Michael; Hirsch, Hans; Perreau, Matthieu; Yerly, Sabine; Calmy, Alexandra; Cavassini, Matthias; Stöckle, Marcel; Furrer, Hansjakob; Vernazza, Pietro; Bernasconi, Enos; Günthard, Huldrych F; Swiss HIV Cohort Study (2021). Predictors of virological failure and time to viral suppression of first line integrase inhibitor based antiretroviral treatment. Clinical Infectious Diseases, 73(7):e2134-e2141.

Deutschmann, Elisabeth; Bucher, Heiner C; Jaeckel, Steffen; Gibbons, Sara; McAllister, Katie; Scherrer, Alexandra U; Braun, Dominique L; Cavassini, Matthias; Hachfeld, Anna; Calmy, Alexandra; Battegay, Manuel; Cipriani, Michela; Elzi, Luigia; Young, James; Lopez-Centeno, Beatriz; Berenguer, Juan; Khoo, Saye; Moffa, Giusi; Marzolini, Catia; Swiss HIV Cohort Study (2021). Prevalence of potential drug-drug interactions in patients of the Swiss HIV Cohort Study in the era of HIV integrase inhibitors. Clinical Infectious Diseases, 73(7):e2145-e2152.

Engel, Tanja; Raffenberg, Marieke; Schoepf, Isabella C; Kootstra, Neeltje A; Reiss, Peter; Thorball, Christian W; Hasse, Barbara; Hirzel, Cédric; Wissel, Kerstin; Roth, Jan A; Bernasconi, Enos; Darling, Katharine E A; Calmy, Alexandra; Fellay, Jacques; Kouyos, Roger D; Günthard, Huldrych F; Ledergerber, Bruno; Tarr, Philip E (2021). Telomere Length, Traditional Risk Factors, HIV-related Factors and Coronary Artery Disease Events in Swiss Persons Living with HIV. Clinical Infectious Diseases, 73(7):e2070-e2076.

Siegfried, Sandra; Bopp, Matthias; Günthard, Huldrych; Keiser, Olivia; Weibull, Caroline E; Crowther, Michael; Hothorn, Torsten (2021). Assessing relative COVID-19 mortality during the second wave: a prospective Swiss population-based study. BMJ Open, 11(10):e051164.

Wendel Garcia, Pedro David; Hofmaenner, Daniel Andrea; Brugger, Silvio D; Acevedo, Claudio T; Bartussek, Jan; Camen, Giovanni; Bader, Patrick Raphael; Bruellmann, Gregor; Kattner, Johannes; Ganter, Christoph; Schuepbach, Reto Andreas; Buehler, Philipp Karl (2021). Closed-Loop Versus Conventional Mechanical Ventilation in COVID-19 ARDS. Journal of intensive care medicine, 36(10):1184-1193.

Battegay, M; Fumeaux, Thierry; Mueller, Nicolas J; Pargger, H (2021). Acute Medicine during the COVID-19 Pandemic in Switzerland. World Medical Journal:22-23.

Adam, Kai-Manuel; Osthoff, Michael; Lamoth, Frédéric; Conen, Anna; Erard, Véronique; Boggian, Katia; Schreiber, Peter W; Zimmerli, Stefan; Bochud, Pierre-Yves; Neofytos, Dionysios; Fleury, Mapi; Fankhauser, Hans; Goldenberger, Daniel; Mühlethaler, Konrad; Riat, Arnaud; Zbinden, Reinhard; Kronenberg, Andreas; Quiblier, Chantal; Marchetti, Oscar; Khanna, Nina (2021). Trends of the Epidemiology of Candidemia in Switzerland: A 15-Year FUNGINOS Survey. Open Forum Infectious Diseases, 8(10):ofab471.

Zweifel, Sandrine Anne; Wiest, Maximilian Robert Justus; Toro, Mario Damiano; Hasler, Pascal; Maloca, Peter; Hasse, Barbara; Khanna, Nina; Rejdak, Robert (2021). Long-Term Clinical and Multimodal Imaging Findings in Patients with Disseminated Mycobacterium Chimaera Infection. Journal of clinical medicine, 10(18):4178.

Weber, Marc; Nicca, Dunja; Schmidt, Axel Jeremias; Reinacher, Matthias; Rasi, Manuela; Braun, Dominique; Kouyos, Roger; Hauser, Christoph; Calmy, Alexandra; Cavassini, Matthias; Vernazza, Pietro; Stöckle, Marcel; Bernasconi, Enos; Christinet, Vanessa; Depmeier, Carsten; Boffi El Amari, Emanuelle; Läuchli, Severin; Haerry, David; Bize, Raphael; Low, Nicola; Lehner, Andreas; Böni, Jürg; Fehr, Jan S; Hampel, Benjamin (2021). HIV-Prä-Expositionsprophylaxe in der Schweiz. Swiss Medical Forum, 21(37-38):632-636.

Gysin, Marina; Acevedo, Claudio Tirso; Haldimann, Klara; Bodendoerfer, Elias; Imkamp, Frank; Bulut, Karl; Buehler, Philipp Karl; Brugger, Silvio Daniel; Becker, Katja; Hobbie, Sven N (2021). Antimicrobial susceptibility patterns of respiratory Gram-negative bacterial isolates from COVID-19 patients in Switzerland. Annals of Clinical Microbiology and Antimicrobials, 20:64.

Posada-Céspedes, Susana; Van Zyl, Gert; Montazeri, Hesam; Kuipers, Jack; Rhee, Soo-Yon; Kouyos, Roger; Günthard, Huldrych F; Beerenwinkel, Niko (2021). Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C. PLoS Computational Biology, 17(9):e1008363.

Moldt, Brian; Parvangada, Aiyappa; Martin, Ross; Pace, Craig; Balakrishnan, Mini; Thomsen, Nathan D; E Collins, Sean; Kuster, Herbert; Braun, Dominique L; Günthard, Huldrych F; Geleziunas, Romas; Callebaut, Christian (2021). Evaluation of Broadly Neutralizing Antibody Sensitivity by Genotyping and Phenotyping for Qualifying Participants to HIV Clinical Trials. Journal of Acquired Immune Deficiency Syndromes, 88(1):61-69.

Kusejko, Katharina; Neofytos, Dionysios; Hirsch, Hans H; Meylan, Pascal; Boggian, Katia; Hirzel, Cedric; Garzoni, Christian; Kouyos, Roger D; Mueller, Nicolas J; Schreiber, Peter W; Swiss Transplant Cohort Study (2021). Differences Between Infectious Disease Events in First Liver Transplant Versus Retransplantation in the Swiss Transplant Cohort Study. Liver Transplantation, 27(9):1283-1290.

Van Hemelrijck, Mathias; Frank, Michelle; Zinkernagel, Annelies S; Buechel, Ronny; Sromicki, Juri; Wilhelm, Markus J; Klein, Holger; Hasse, Barbara; Mestres, Carlos A (2021). Sternectomy for Candida albicans sternal osteomyelitis after left ventricular assist device implantation. Indian Journal of Thoracic and Cardiovascular Surgery, 37(5):573-576.

Weisskopf, Saskia; Altwegg, Olivia; Egli, Rolf; Frhlich, Jrg; Remmele, Waltraud; Bonkat, Gernot; Grandinetti, Tanja; Spieler, Patricia; Providoli, Romeo; Rowedder, Axel; Etter, Gisela; Huttner, Angela; Hasse, Barbara; Tarr, Philip (2021). Harnwegsinfektionen bei Männern. Primary and Hospital Care, 21(09):283-289.

Wolfensberger, Aline; Mang, Nora; Gibson, Kristen E; Gontjes, Kyle; Cassone, Marco; Brugger, Silvio D; Mody, Lona; Sax, Hugo (2021). Understanding short-term transmission dynamics of methicillin-resistant Staphylococcus aureus in the patient room. Infection Control and Hospital Epidemiology:Epub ahead of print.

Kovari, H; Surial, B; Tarr, P E; Cavassini, M; Calmy, A; Schmid, P; Bernasconi, E; Rauch, A; Wandeler, G; Ledergerber, B; Swiss HIV Cohort Study (2021). Changes in alanine aminotransferase levels after switching from tenofovir disoproxil fumarate (TDF) to tenofovir alafenamide (TAF) in HIV-positive people without viral hepatitis in the Swiss HIV Cohort Study. HIV Medicine, 22(7):623-628.

Audigé, Annette; Böni, Jürg; Schreiber, Peter W; Scheier, Thomas; Buonomano, Roberto; Rudiger, Alain; Braun, Dominique L; Eich, Gerhard; Keller, Dagmar I; Hasse, Barbara; Berger, Christoph; Günthard, Huldrych F; Manrique, Amapola; Trkola, Alexandra; Huber, Michael (2021). Reduced Relative Sensitivity of the Elecsys SARS-CoV-2 Antigen Assay in Saliva Compared to Nasopharyngeal Swabs. Microorganisms, 9(8):1700.

Hilfiker, Anina; Germann, Martina; Mattmller, Marianne; Huttner, Angela; Spieler, Patricia; Grandinetti, Tanja; Aebi-Popp, Karoline; Remmele, Waltraud; Carp, Peter Christiaan; Altwegg, Olivia; Weisskopf, Saskia; Meynard, Anne; Lehmann, Annette; Schb, Lukas; Hasse, Barbara; Etter, Gisela; Tarr, Philip (2021). Rezidivierende Harnwegsinfektionen. Primary and Hospital Care, 6(28):257-263.

Thorball, Christian W; Oudot-Mellakh, Tiphaine; Ehsan, Nava; Hammer, Christian; Santoni, Federico A; Niay, Jonathan; Costagliola, Dominique; Goujard, Cécile; Meyer, Laurence; Wang, Sophia S; Hussain, Shehnaz K; Theodorou, Ioannis; Cavassini, Matthias; Rauch, Andri; Battegay, Manuel; Hoffmann, Matthias; Schmid, Patrick; Bernasconi, Enos; Günthard, Huldrych F; Mohammadi, Pejman; McLaren, Paul J; Rabkin, Charles S; Besson, Caroline; Fellay, Jacques (2021). Genetic variation near CXCL12 is associated with susceptibility to HIV-related non-Hodgkin lymphoma. Haematologica, 106(8):2233-2241.

Anagnostopoulos, Alexia; Mayer, Fabienne; Ledergerber, Bruno; Bergadà-Pijuan, Judith; Husmann, Lars; Mestres, Carlos A; Rancic, Zoran; Hasse, Barbara (2021). Editor's Choice - Validation of the Management of Aortic Graft Infection Collaboration (MAGIC) Criteria for the Diagnosis of Vascular Graft/Endograft Infection: Results from the Prospective Vascular Graft Cohort Study. European Journal of Vascular and Endovascular Surgery, 62(2):251-257.

Husmann, Lars; Muehlematter, Urs J; Grimm, Felix; Ledergerber, Bruno; Messerli, Michael; Kudura, Ken; Gruenig, Hannes; Muellhaupt, Beat; Hasse, Barbara; Huellner, Martin W (2021). PET/CT helps to determine treatment duration in patients with resected as well as inoperable alveolar echinococcosis. Parasitology International, 83:102356.

Eshmuminov, Dilmurodjon; Mueller, Matteo; Brugger, Silvio D; Bautista Borrego, Lucia; Becker, Dustin; Hefti, Max; Hagedorn, Catherine; Duskabilova, Muhayyo; Tibbitt, Mark W; Dutkowski, Philipp; Rudolf von Rohr, Philipp; Schuler, Martin J; Mueller, Nicolas J; Clavien, Pierre-Alain (2021). Sources and prevention of graft infection during long-term ex situ liver perfusion. Transplant Infectious Disease, 23(4):e13623.

Maximiano Sousa, Filipe; Roelens, Maroussia; Fricker, Brian; Thiabaud, Amaury; Iten, Anne; Cusini, Alexia; Flury, Domenica; Buettcher, Michael; Zukol, Franziska; Balmelli, Carlo; Zimmermann, Petra; Troillet, Nicolas; Vuichard-Gysin, Danielle; Schreiber, Peter W; Bernhard-Stirnemann, Sara; Tschudin-Sutter, Sarah; Nussbaumer-Ochsner, Yvonne; Sommerstein, Rami; Gaudenz, Roman; Marschall, Jonas; Senn, Laurence; Gardiol, Céline; Keiser, Olivia; Schüpbach, Gertraud; Wymann, Monica; Vidondo, Beatriz; Ch-Sur Study Group (2021). Risk factors for severe outcomes for COVID-19 patients hospitalised in Switzerland during the first pandemic wave, February to August 2020: prospective observational cohort study. Swiss Medical Weekly, 151:w20547.

Hofmaenner, Daniel Andrea; Wendel Garcia, Pedro David; Ganter, Christoph Camille; Brugger, Silvio D; Buehler, Philipp Karl; David, Sascha (2021). What every intensivist should know about Tocilizumab. Critical Care, 25(1):262.

Ulyte, Agne; Radtke, Thomas; Abela, Irene Alma; Haile, Sarah R; Blankenberger, Jacob; Jung, Ruedi; Capelli, Celine; Berger, Christoph; Frei, Anja; Huber, Michael; Schanz, Merle; Schwarzmueller, Magdalena; Trkola, Alexandra; Fehr, Jan; Puhan, Milo Alan; Kriemler, Susi (2021). Variation in SARS-CoV-2 seroprevalence across districts, schools and classes: baseline measurements from a cohort of primary and secondary school children in Switzerland. BMJ Open, 11(7):e047483.

Metsini, Aliki; Widmer, Andreas; Zingg, Walter; Gardiol, Céline; Vuichard-Gysin, Danielle; Eder, Marcus; Maag, Judith; Schlegel, Matthias; Marschall, Jonas; Harbarth, Stephan; Sommerstein, Rami (2021). Evaluation of existing and desired measures to monitor, prevent and control healthcare-associated infections in Swiss hospitals. Swiss Medical Weekly, 151:w20516.

Maibach, Martina A; Allam, Ahmed; Hilty, Matthias P; Perez Gonzalez, Nicolas A; Buehler, Philipp K; Wendel Garcia, Pedro D; Brugger, Silvio D; Ganter, Christoph C; CoViD-19 ICU-Research Group Zurich; RISC-19-ICU Investigators; Krauthammer, Michael; Schuepbach, Reto A; Bartussek, Jan (2021). How to Synchronize Longitudinal Patient Data With the Underlying Disease Progression: A Pilot Study Using the Biomarker CRP for Timing COVID-19. Frontiers in Medicine, 8:607594.

Conan, Pierre-Louis; Matignon, Marie; Bleibtreu, Alexandre; Guillot, Hélène; Van Laecke, Steven; Brenier, Henri; Crochette, Romain; Melica, Giovanna; Fernández-Ruiz, Mario; Dantal, Jacques; Walti, Laura N; Levi, Charlène; Chauvet, Cécile; De Greef, Julien; Marbus, Sierk D; Mueller, Nicolas J; Ieven, Margareta; Vuotto, Fanny; Lortholary, Olivier; Coussement, Julien; Lebeaux, David (2021). Trimethoprim/sulfamethoxazole for nocardiosis in solid organ transplant recipients: Real-life data from a multicentre retrospective study. Transplant Infectious Disease, 23(4):e13669.

Szentes, Szilvia; Meyer, Lilly; Hasse, Barbara; Herren, Thomas; Bink, Andrea; Buonomano, Roberto; Germans, Menno; Unseld, Simone (2021). Q-Fieber-Endokarditis mit intrazerebraler Blutung. Swiss Medical Forum, 2021(27-28):487-490.

Kraljevic, Mateja; Khanna, Nina; Medinger, Michael; Passweg, Jakob; Masouridi-Levrat, Stavroula; Chalandon, Yves; Mueller, Nicolas J; Schanz, Urs; Vernaz, Nathalie; Van Delden, Christian; Neofytos, Dionysios; Swiss Transplant Cohort Study (2021). Clinical considerations on posaconazole administration and therapeutic drug monitoring in allogeneic hematopoietic cell transplant recipients. Medical Mycology, 59(7):701-711.

Klein, Karina; Schweizer, Tiziano A; Siwy, Katharina; Lechmann, Beat; Karol, Agnieszka; von Rechenberg, Brigitte; Achermann, Yvonne; Darwiche, Salim E (2021). Establishment of a localized acute implant-associated Staphylococcus aureus bone infection model in sheep. FEMS Pathogens and Disease, 79(6):ftab032.

Husmann, Lars; Eberhard, Nadia; Huellner, Martin W; Ledergerber, Bruno; Mueller, Anna; Gruenig, Hannes; Messerli, Michael; Mestres, Carlos-A; Rancic, Zoran; Zimmermann, Alexander; Hasse, Barbara (2021). Impact of unknown incidental findings in PET/CT examinations of patients with proven or suspected vascular graft or endograft infections. Scientific Reports, 11:13747.

Wolfensberger, Aline; Schmid, Manuel; Sax, Hugo; Clack, Lauren; Wyler, Colette; Bassler, Dirk; Kusejko, Katharina; Meyer, Lilly; Rampini, Silvana K; Fontijn, Jehudith R (2021). Determinants for voluntary participation in staff screening during an methicillin-resistant Staphylococcus aureus (MRSA) outbreak on a neonatal ward. Infection Control and Hospital Epidemiology, 42(7):881-884.

Ahmad, Raheelah; Atun, Rifat A; Birgand, Gabriel; Castro-Sánchez, Enrique; Charani, Esmita; Ferlie, Ewan B; Hussain, Izhar; Kambugu, Andrew; Labarca, Jaime; Hara, Gabriel Levy; McKee, Martin; Mendelson, Marc; Singh, Sanjeev; Varma, Jay; Zhu, Nina J; Zingg, Walter; Holmes, Alison H (2021). Macro level influences on strategic responses to the COVID-19 pandemic - an international survey and tool for national assessments. Journal of Global Health, 11:05011.

Walti, Laura N; Mugglin, Catarina; Sidler, Daniel; Mombelli, Matteo; Manuel, Oriol; Hirsch, Hans H; Khanna, Nina; Mueller, Nicolas; Berger, Christoph; Boggian, Katia; Garzoni, Christian; Neofytos, Dionysios; van Delden, Christian; Hirzel, Cédric (2021). Association of Antiviral Prophylaxis and Rituximab Use with Post-transplant Lymphoproliferative Disorders (PTLD): A Nationwide Cohort Study. American Journal of Transplantation, 21(7):2532-2542.

Hasler, Anita; Unterfrauner, Ines; Olthof, Maurits G L; Jans, Peter; Betz, Michael; Achermann, Yvonne; Uçkay, Ilker (2021). Deep surgical site infections following double-dose perioperative antibiotic prophylaxis in adult obese orthopedic patients. International Journal of Infectious Diseases, 108:537-542.

Yokota, Masaya; Häffner, Nicola; Kassier, Matthew; Brunner, Matthias; Shambat, Srikanth Mairpady; Brennecke, Fabian; Schniering, Janine; Marques Maggio, Ewerton; Distler, Oliver; Zinkernagel, Annelies Sophie; Maurer, Britta (2021). Staphylococcus aureus impairs dermal fibroblast functions with deleterious effects on wound healing. FASEB Journal, 35(7):e21695.

Santos, Galia; Locatelli, Isabella; Métral, Mélanie; Berney, Alexandre; Nadin, Isaure; Calmy, Alexandra; Tarr, Philip; Gutbrod, Klemens; Hauser, Christoph; Brugger, Peter; Kovari, Helen; Kunze, Ursi; Stoeckle, Marcel; Früh, Severin; Schmid, Patrick; Rossi, Stefania; Di Benedetto, Caroline; Du Pasquier, Renaud; Darling, Katharine; Cavassini, Matthias; NAMACO study group; Swiss HIV Cohort Study (2021). The association between depressive symptoms and neurocognitive impairment in people with well-treated HIV in Switzerland. International journal of STD & AIDS, 32(8):729-739.

Bachmann, Nadine; Kusejko, Katharina; Nguyen, Huyen; Chaudron, Sandra E; Kadelka, Claus; Turk, Teja; Böni, Jürg; Perreau, Matthieu; Klimkait, Thomas; Yerly, Sabine; Battegay, Manuel; Rauch, Andri; Ramette, Alban; Vernazza, Pietro; Bernasconi, Enos; Cavassini, Matthias; Günthard, Huldrych F; Kouyos, Roger D; Swiss HIV Cohort Study (2021). Phylogenetic cluster analysis identifies virological and behavioral drivers of HIV transmission in MSM. Clinical Infectious Diseases, 72(12):2175-2183.

Dietrich, Léna G; Thorball, Christian W; Ryom, Lene; Burkhalter, Felix; Hasse, Barbara; Thurnheer, Maria Christine; Weisser, Maja; Schmid, Patrick; Bernasconi, Enos; Darling, Kathrine E A; Buvelot, Hélène; Fellay, Jacques; Ledergerber, Bruno; Tarr, Philip E; Swiss HIV Cohort Study (2021). Rapid progression of kidney dysfunction in Swiss people living with HIV: contribution of polygenic risk score and D:A:D clinical risk score. Journal of Infectious Diseases, 223(12):2145-2153.

Achermann, Yvonne; Kusejko, Katharina; Auñón, Álvaro; Clauss, Martin; Corvec, Stéphane; Esteban, Jaime; Fernandez-Sampedro, Marta; Ferrari, Matteo Carlo; Gassmann, Natalie; Jent, Philipp; Jost, Bernhard; Kouyos, Roger D; Kramer, Tobias Siegfried; Lora-Tamayo, Jaime; Morand, Philippe C; Benito, Natividad; Pablo-Marcos, Daniel; Patel, Robin; Scanferla, Giulia; Sendi, Parham; Slama, Dorsaf; Stadelmann, Vincent A; Strahm, Carol; Thurnheer, Christine; Trebše, Rihard; Uckay, Ilker; Vijayvargiya, Prakhar; Waldmann, Isabelle; Wouthuyzen-Bakker, Marjan (2021). The impact of surgical strategy and rifampin on treatment outcome in Cutibacterium periprosthetic joint infections. Clinical Infectious Diseases, 72(12):e1064-e1073.

Scheier, Thomas; Kuster, Stefan P; Dunic, Mesida; Falk, Christian; Sax, Hugo; Schreiber, Peter W (2021). Does continuity in nursing staff matter? A pilot study on correlation of central line-associated bloodstream infections and employee turnover. Antimicrobial Resistance and Infection Control, 10:90.

Namugenyi, Juliet; Musaazi, Joseph; Katamba, Achilles; Kalyango, Joan; Sendaula, Emmanuel; Kambugu, Andrew; Fehr, Jan; Castelnouvo, Barbara; Manabe, Yukari C; Ssengooba, Willy; Sekaggya-Wiltshire, Christine (2021). Baseline Xpert MTB/RIF ct values predict sputum conversion during the intensive phase of anti-TB treatment in HIV infected patients in Kampala, Uganda: a retrospective study. BMC Infectious Diseases, 21:513.

Nguyen, Huyen; Thorball, Christian Wandell; Fellay, Jacques; Böni, Jürg; Yerly, Sabine; Perreau, Matthieu; Hirsch, Hans H; Kusejko, Katharina; Thurnheer, Maria Christine; Battegay, Manuel; Cavassini, Matthias; Kahlert, Christian R; Bernasconi, Enos; Günthard, Huldrych F; Kouyos, Roger D; Swiss HIV Cohort Study (2021). Systematic screening of viral and human genetic variation identifies antiretroviral resistance and immune escape link. eLife, 10:e67388.

Surial, Bernard; Mugglin, Catrina; Calmy, Alexandra; Cavassini, Matthias; Günthard, Huldrych F; Stöckle, Marcel; Bernasconi, Enos; Schmid, Patrick; Tarr, Philip E; Furrer, Hansjakob; Ledergerber, Bruno; Wandeler, Gilles; Rauch, Andri; Swiss HIV Cohort Study (2021). Weight and Metabolic Changes After Switching From Tenofovir Disoproxil Fumarate to Tenofovir Alafenamide in People Living With HIV : A Cohort Study. Annals of Internal Medicine, 174(6):758-767.

Reuss, Anna Maria; Wulf, Marie-Angela; Oertel, Markus Florian; Bozinov, Oliver; Henzi, Anna; Kaelin, Marisa B; Reinehr, Michael; Grimm, Felix; Rushing, Elisabeth J (2021). An immunocompetent farmer with isolated cerebral alveolar echinococcosis: illustrative case. Journal of neurosurgery. Case lessons, 1(22):CASE2187.

Bachofner, Jacqueline Alexandra; Ikenberg, Kristian; Schulthess, Bettina; Nemeth, Johannes (2021). Disseminated Mycobacterium simiae and Mycobacterium avium infection causing an immune reconstitution inflammatory syndrome in a female patient with HIV infection. BMJ Case Reports, 14(5):e241037.

Wendel Garcia, Pedro D; Aguirre-Bermeo, Hernán; Buehler, Philipp K; Alfaro-Farias, Mario; Yuen, Bernd; David, Sascha; Tschoellitsch, Thomas; Wengenmayer, Tobias; Korsos, Anita; Fogagnolo, Alberto; Kleger, Gian-Reto; Wu, Maddalena A; Colombo, Riccardo; Turrini, Fabrizio; Potalivo, Antonella; Rezoagli, Emanuele; Rodríguez-García, Raquel; Castro, Pedro; Lander-Azcona, Arantxa; Martín-Delgado, Maria C; Lozano-Gómez, Herminia; Ensner, Rolf; Michot, Marc P; Gehring, Nadine; Schott, Peter; Siegemund, Martin; Merki, Lukas; Wiegand, Jan; Jeitziner, Marie M; Laube, Marcus; Fodor, Patricia; et al (2021). Implications of early respiratory support strategies on disease progression in critical COVID-19: a matched subanalysis of the prospective RISC-19-ICU cohort. Critical Care, 25:175.

Acevedo, Claudio Tirso; Imkamp, Frank; Marques Maggio, Ewerton; Brugger, Silvio Daniel (2021). Primary cutaneous nocardiosis of the head and neck in an immunocompetent patient. BMJ Case Reports, 14(5):e241217.

Kok, Yik Lim; Vongrad, Valentina; Chaudron, Sandra E; Shilaih, Mohaned; Leemann, Christine; Neumann, Kathrin; Kusejko, Katharina; Di Giallonardo, Francesca; Kuster, Herbert; Braun, Dominique L; Kouyos, Roger D; Günthard, Huldrych F; Metzner, Karin J (2021). HIV-1 integration sites in CD4+ T cells during primary, chronic, and late presentation of HIV-1 infection. Journal of clinical investigation insight, 6(9):e143940.

Uçkay, İlker; Hüllner, Martin W; Achermann, Yvonne; Plate, Andreas; Schöni, Madlaina; Rosskopf, Andrea; Berli, Martin C (2021). The role of 99mTc-antigranulocyte SPECT/CT in community-acquired diabetic foot osteomyelitis: A clinical experience. Current Diabetes Reviews, 17:Epub ahead of print.

The RESPOND Study Group (2021). Incidence of dyslipidemia in people with HIV who are treated with integrase inhibitors versus other antiretroviral agents. AIDS, 35(6):869-882.

Mombelli, Matteo; Lang, Brian M; Neofytos, Dionysios; Aubert, John-David; Benden, Christian; Berger, Christoph; Boggian, Katia; Egli, Adrian; Soccal, Paola M; Kaiser, Laurent; Hirzel, Cédric; Pascual, Manuel; Koller, Michael; Mueller, Nicolas J; van Delden, Christian; Hirsch, Hans H; Manuel, Oriol; Swiss Transplant Cohort Study (2021). Burden, epidemiology, and outcomes of microbiologically confirmed respiratory viral infections in solid organ transplant recipients: a nationwide, multi-season prospective cohort study. American Journal of Transplantation, 21(5):1789-1800.

Reichmuth, M L; Chaudron, S E; Bachmann, N; Nguyen, H; Böni, J; Metzner, K J; Perreau, M; Klimkait, T; Yerly, S; Hirsch, H H; Hauser, C; Ramette, A; Vernazza, P; Cavassini, M; Bernasconi, E; Günthard, H F; Kusejko, K; Kouyos, R D; Swiss HIV Cohort Study (2021). Using longitudinally sampled viral nucleotide sequences to characterize the drivers of HIV-1 transmission. HIV Medicine, 22(5):346-359.

Werren, Joel P; Troxler, Lukas J; Oyewole, Oluwaseun Rume-Abiola; Ramette, Alban; Brugger, Silvio D; Bruggmann, Rémy; van der Linden, Mark; Nahm, Moon H; Gjuroski, Ilche; Casanova, Carlo; Furrer, Julien; Hilty, Markus (2021). Carbon Source-Dependent Changes of the Structure of Streptococcus pneumoniae Capsular Polysaccharide with Serotype 6F. International Journal of Molecular Sciences, 22(9):4580.

Glampedakis, Emmanouil; Cassaing, Sophie; Fekkar, Arnaud; Dannaoui, Eric; Bougnoux, Marie-Elisabeth; Bretagne, Stéphane; Neofytos, Dionysios; Schreiber, Peter W; Hennequin, Christophe; Morio, Florent; Shadrivova, Olga; Bongomin, Felix; Fernández-Ruiz, Mario; Bellanger, Anne Pauline; Arikan-Akdagli, Sevtap; Erard, Veronique; Aigner, Maria; Paolucci, Michela; Khanna, Nina; Charpentier, Eléna; Bonnal, Christine; Brun, Sophie; Gabriel, Frederic; Riat, Arnaud; Zbinden, Reinhard; Le Pape, Patrice; Klimko, Nikolai; Lewis, Russel E; Richardson, Malcolm; İnkaya, Ahmet Cagkan; et al (2021). Invasive aspergillosis due to Aspergillus section Usti: a multicenter retrospective study. Clinical Infectious Diseases, 72(8):1379-1385.

Glass, Tracy R; Günthard, Huldrych; Calmy, Alexandra; Bernasconi, Enos; Scherrer, Alexandra U; Battegay, Manuel; Steffen, Ana; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Cavassini, Matthias; Furrer, Hansjakob; Swiss HIV Cohort Study (2021). The role of HIV asymptomatic status when starting ART on adherence and treatment outcomes and implications for test and treat: the Swiss HIV Cohort Study. Clinical Infectious Diseases, 72(8):1413-1421.

Rüeger, Sina; Hammer, Christian; Loetscher, Alexis; McLaren, Paul J; Lawless, Dylan; Naret, Olivier; Khanna, Nina; Bernasconi, Enos; Cavassini, Matthias; Günthard, Huldrych F; Kahlert, Christian R; Rauch, Andri; Depledge, Daniel P; Morfopoulou, Sofia; Breuer, Judith; Zdobnov, Evgeny; Fellay, Jacques; Swiss HIV Cohort Study (2021). Author Correction: The influence of human genetic variation on Epstein-Barr virus sequence diversity. Scientific Reports, 11:8946.

Buehler, Philipp K; Zinkernagel, Annelies S; Hofmaenner, Daniel A; Wendel Garcia, Pedro David; Acevedo, Claudio T; Gómez-Mejia, Alejandro; Mairpady Shambat, Srikanth; Andreoni, Federica; Maibach, Martina A; Bartussek, Jan; Hilty, Matthias P; Frey, Pascal M; Schuepbach, Reto A; Brugger, Silvio D (2021). Bacterial pulmonary superinfections are associated with longer duration of ventilation in critically ill COVID-19 patients. Cell Reports Medicine, 2(4):100229.

Muller, Christina K S; Spagnuolo, Julian; Audigé, Annette; Chancellor, Andrew; Russenberger, Doris; Scherrer, Alexandra U; Hoffmann, Matthias; Kouyos, Roger; Battegay, Manuel; De Libero, Gennaro; Speck, Roberto F; Swiss HIV Cohort Study (2021). Immunophenotypic characterization of TCR γδ T cells and MAIT cells in HIV-infected individuals developing Hodgkin's lymphoma. Infectious Agents and Cancer, 16:24.

Petoumenos, Kathy; Kuwanda, Locadiah; Ryom, Lene; Mocroft, Amanda; Reiss, Peter; De Wit, Stephane; Pradier, Christian; Bonnet, Fabrice; Phillips, Andrew; Hatleberg, Camilla I; d'Arminio Monforte, Antonella; Weber, Rainer; Sabin, Caroline A; Lundgren, Jens; Law, Matthew G (2021). Effect of changes in body mass index on the risk of cardiovascular disease and diabetes mellitus in HIV-positive individuals: results from the D: A: D study. Journal of Acquired Immune Deficiency Syndromes, 86(5):579-586.

Bodendoerfer, Elias; Personnic, Nicolas; Mestres, Carlos A; Wilhelm, Markus J; Meyer, Lilly; Hasse, Barbara (2021). Possible Prosthetic Valve Endocarditis by Pandoraea pnomenusa and Specific Virulence Mechanisms. Infection and Drug Resistance, 14:1319-1324.

Künzler-Heule, Patrizia; Fierz, Katharina; Schmidt, Axel Jeremias; Rasi, Manuela; Bogdanovic, Jasmina; Kocher, Agnes; Engberg, Sandra; Battegay, Manuel; Nöstlinger, Christiana; Lehner, Andreas; Kouyos, Roger; Schmid, Patrick; Braun, Dominique Laurent; Fehr, Jan; Nicca, Dunja (2021). Response to a sexual risk reduction intervention provided in combination with hepatitis C treatment by HIV/HCV co-infected men who have sex with men: a reflexive thematic analysis. BMC Infectious Diseases, 21:319.

Raffenberg, Marieke; Engel, Tanja; Schoepf, Isabella C; Kootstra, Neeltje A; Reiss, Peter; Braun, Dominique L; Thorball, Christian W; Fellay, Jacques; Kouyos, Roger D; Ledergerber, Bruno; Günthard, Huldrych F; Tarr, Philip E; Zurich Primary HIV Infection Study; Swiss HIV Cohort Study (2021). Impact of Delaying Antiretroviral Treatment during Primary HIV Infection on Telomere Length. Journal of Infectious Diseases:Epub ahead of print.

Kamal, Susan; Urata, John; Cavassini, Matthias; Liu, Honghu; Kouyos, Roger; Bugnon, Olivier; Wang, Wei; Schneider, Marie-Paule (2021). Random forest machine learning algorithm predicts virologic outcomes among HIV infected adults in Lausanne, Switzerland using electronically monitored combined antiretroviral treatment adherence. AIDS Care, 33(4):530-536.

Mocroft, A; Petoumenos, K; Wit, Ferdinand; Vehreschild, Jörg J; Guaraldi, G; Miro, J M; Greenberg, Lauren; Oellinger, A; Egle, A; Gunthard, H F; Bucher, H C; de Wit, S; Necsoi, C; Castagna, A; Spagnuolo, V; D'Arminio Monforte, A; Reiss, P; Chkhartishvili, N; Bolokadze, N; Hoy, J; Sonnenborg, A; Svedhem, V; Bower, M; Volny-Anne, A; Garges, H; Rogatto, F; Neesgaard, Bastian; Peters, L; Lundgren, J D; Ryom, L (2021). The interrelationship of smoking, CD4+ cell count, viral load and cancer in persons living with HIV. AIDS, 35(5):747-757.

Van Hemelrijck, Mathias; Sromicki, Juri; Hasse, Barbara; Quintana, Eduard; Miró, José M; Mestres, Carlos-A (2021). Tratamiento quirúrgico de la Endocarditis Infecciosa activa. Revista Chilena de Cardiología, 40(1):68-79.

Maurer, Steven M. Cutibacterium avidum resist surgical skin antisepsis in the groin - a potential rsik factor for periprostetic joint infection: a quality control study. 2021, University of Zurich, Faculty of Medicine.

Maurer, Steven M. Cutibacterium avidum resists surgical skin antisepsis in the groin-a potential risk factor for periprosthetic joint infection: a quality control study. 2021, University of Zurich, Faculty of Medicine.

Scheier, T; Saleschus, D; Dunic, M; Fröhlich, M R; Schüpbach, R; Falk, C; Sax, H; Kuster, S P; Schreiber, P W (2021). Implementation of daily chlorhexidine bathing in intensive care units for reduction of central line-associated bloodstream infections. Journal of Hospital Infection, 110:26-32.

Laupland, Kevin B; Zingg, Walter (2021). More is not better: the complicated relationship between obesity, critical illness, and infection. Intensive Care Medicine, 47(4):467-469.

Leung, Yau Kei Stefan; Ledergerber, Bruno; Eberhard, Nadia; Mestres, Carlos A; Rancic, Zoran; Zimmermann, Alexander; Zbinden, Reinhard; Brugger, Silvio D; Zinkernagel, Annelies S; Hasse, Barbara (2021). Open wounds and rifampicin therapy are associated with rifampicin resistance among staphylococcal vascular graft/endograft infections. JAC - Antimicrobial Resistance, 3(1):dlab041.

Werner, Jana; Reichen, Ina; Huber, Michael; Abela, Irene A; Weller, Michael; Jelcic, Ilijas (2021). Subacute cerebellar ataxia following respiratory symptoms of COVID-19: a case report. BMC Infectious Diseases, 21:298.

Huber, Michael; Schreiber, Peter Werner; Scheier, Thomas; Audigé, Annette; Buonomano, Roberto; Rudiger, Alain; Braun, Dominique L; Eich, Gerhard; Keller, Dagmar I; Hasse, Barbara; Böni, Jürg; Berger, Christoph; Günthard, Huldrych F; Manrique, Amapola; Trkola, Alexandra (2021). High Efficacy of Saliva in Detecting SARS-CoV-2 by RT-PCR in Adults and Children. Microorganisms, 9(3):642.

Ulyte, Agne; Radtke, Thomas; Abela, Irene A; Haile, Sarah R; Berger, Christoph; Huber, Michael; Schanz, Merle; Schwarzmueller, Magdalena; Trkola, Alexandra; Fehr, Jan; Puhan, Milo A; Kriemler, Susi (2021). Clustering and longitudinal change in SARS-CoV-2 seroprevalence in school children in the canton of Zurich, Switzerland: prospective cohort study of 55 schools. BMJ : British medical journal, 372:n616.

Meier, Noemi Rebecca; Battegay, Manuel; Ottenhoff, Tom H M; Furrer, Hansjakob; Nemeth, Johannes; Ritz, Nicole (2021). HIV-Infected Patients Developing Tuberculosis Disease Show Early Changes in the Immune Response to Novel Mycobacterium tuberculosis Antigens. Frontiers in Immunology, 12:620622.

Scheier, Thomas; Shah, Cyril; Huber, Michael; Sax, Hugo; Hasse, Barbara; Günthard, Huldrych F; Trkola, Alexandra; Schreiber, Peter W (2021). Do we cause false positives? An experimental series on droplet or airborne SARS-CoV-2 contamination of sampling tubes during swab collection in a test center. Antimicrobial Resistance and Infection Control, 10:51.

Hothorn, Torsten; Bopp, Matthias; Günthard, Huldrych; Keiser, Olivia; Roelens, Maroussia; Weibull, Caroline E; Crowther, Michael (2021). Assessing relative COVID-19 mortality: a Swiss population-based study. BMJ Open, 11(3):e042387.

Kohler, Philipp; Wolfensberger, Aline; Stampf, Susanne; Brönnimann, Andreas; Boggian, Katia; van Delden, Christian; Favre, Melody; Hirzel, Cédric; Khanna, Nina; Kuster, Stefan P; Manuel, Oriol; Neofytos, Dionysios; Ragozzino, Silvio; Schreiber, Peter W; Walti, Laura; Mueller, Nicolas J; Swiss Transplant Cohort Study (2021). Temporal trends, risk factors and outcomes of infections due to extended-spectrum β-lactamase producing Enterobacterales in Swiss solid organ transplant recipients between 2012 and 2018. Antimicrobial Resistance and Infection Control, 10:50.

Rindler, Audrey E; Kuster, Herbert; Neumann, Kathrin; Leemann, Christine; Braun, Dominique L; Metzner, Karin J; Günthard, Huldrych F (2021). A Novel High Throughput, Parallel Infection Assay for Determining the Replication Capacities of 346 Primary HIV-1 Isolates of the Zurich Primary HIV-1 Infection Study in Primary Cells. Viruses, 13(3):404.

Husmann, Lars; Huellner, Martin W; Eberhard, Nadia; Ledergerber, Bruno; Kaelin, Marisa B; Anagnostopoulos, Alexia; Kudura, Ken; Burger, Irene A; Mestres, Carlos-A; Rancic, Zoran; Hasse, Barbara (2021). PET/CT in therapy control of infective native aortic aneurysms. Scientific Reports, 11:5065.

Darling, Katharine E A; Locatelli, Isabella; Benghalem, Nadia; Nadin, Isaure; Calmy, Alexandra; Gutbrod, Klemens; Hauser, Christoph; Brugger, Peter; Hasse, Barbara; Kovari, Helen; Kunze, Ursi; Stoeckle, Marcel; Fux, Christophe; Rossi, Stefania; Di Benedetto, Caroline; Früh, Severin; Schmid, Patrick; Tarr, Philip E; Daeppen, Jean-Bernard; Du Pasquier, Renaud; Cavassini, Matthias; NAMACO study group; Swiss HIV Cohort Study (2021). Alcohol consumption and neurocognitive deficits in people with well-treated HIV in Switzerland. PLoS ONE, 16(3):e0246579.

Kuster, Stefan P; Böni, Jürg; Kouyos, Roger D; Huber, Michael; Schmutz, Stefan; Shah, Cyril; Bischoff-Ferrari, Heike A; Distler, Oliver; Battegay, Edouard; Giovanoli, Pietro; Guckenberger, Matthias; Kohler, Malcolm; Müller, Rouven; Petry, Heidi; Ruschitzka, Frank; McGeer, Allison; Coleman, Brenda L; Sax, Hugo; Weber, Rainer; Trkola, Alexandra (2021). Absenteeism and presenteeism in healthcare workers due to respiratory illness. Infection Control and Hospital Epidemiology, 42(3):268-273.

Burkhard‐Koren, Nina Maria; Haberecker, Martina; Maccio, Umberto; Ruschitzka, Frank; Schuepbach, Reto A; Zinkernagel, Annelies S; Hardmeier, Thomas; Varga, Zsuzsanna; Moch, Holger (2021). Higher prevalence of pulmonary macrothrombi in SARS-CoV-2 than in influenza A: autopsy results from 'Spanish flu' 1918/1919 in Switzerland to Coronavirus disease 2019. Journal of Pathology: Clinical Research, 7(2):135-143.

Boettiger, David C; Newall, Anthony T; Phillips, Andrew; Bendavid, Eran; Law, Matthew G; Ryom, Lene; Reiss, Peter; Mocroft, Amanda; Bonnet, Fabrice; Weber, Rainer; El-Sadr, Wafaa; d'Arminio Monforte, Antonella; de Wit, Stephane; Pradier, Christian; Hatleberg, Camilla I; Lundgren, Jens; Sabin, Caroline; Kahn, James G; Kazi, Dhruv S (2021). Cost-effectiveness of statins for primary prevention of atherosclerotic cardiovascular disease among people living with HIV in the United States. Journal of the International Aids Society, 24(3):e25690.

Courlet, Perrine; Guidi, Monia; Alves Saldanha, Susana; Stader, Felix; Traytel, Anna; Cavassini, Matthias; Stoeckle, Marcel; Buclin, Thierry; Marzolini, Catia; Decosterd, Laurent A; Csajka, Chantal (2021). Pharmacokinetic/Pharmacodynamic Modelling to Describe the Cholesterol Lowering Effect of Rosuvastatin in People Living with HIV. Clinical Pharmacokinetics, 60(3):379-390.

Rüeger, Sina; Hammer, Christian; Loetscher, Alexis; McLaren, Paul J; Lawless, Dylan; Naret, Olivier; Khanna, Nina; Bernasconi, Enos; Cavassini, Matthias; Günthard, Huldrych F; Kahlert, Christian R; Rauch, Andri; Depledge, Daniel P; Morfopoulou, Sofia; Breuer, Judith; Zdobnov, Evgeny; Fellay, Jacques; Swiss HIV Cohort Study (2021). The influence of human genetic variation on Epstein-Barr virus sequence diversity. Scientific Reports, 11:4586.

Hovaguimian, Frédérique; Günthard, Huldrych F; Hauser, Christoph; Conen, Anna; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Seneghini, Marco; Marzel, Alex; Heinrich, Henriette; Scherrer, Alexandra; Riou, Julien; Spoerri, Adrian; Schmidlin, Kurt; Balakrishna, Suraj; Braun, Dominique L; Rampini, Silvana K; Fehr, Jan S; Kouyos, Roger D; Swiss HIV Cohort Study (2021). Data linkage to evaluate the long-term risk of HIV infection in individuals seeking post-exposure prophylaxis. Nature Communications, 12:1219.

Huemer, Markus; Mairpady Shambat, Srikanth; Bergada-Pijuan, Judith; Söderholm, Sandra; Boumasmoud, Mathilde; Vulin, Clément; Gómez-Mejia, Alejandro; Antelo Varela, Minia; Tripathi, Vishwachi; Götschi, Sandra; Marques Maggio, Ewerton; Hasse, Barbara; Brugger, Silvio D; Bumann, Dirk; Schuepbach, Reto A; Zinkernagel, Annelies S (2021). Molecular reprogramming and phenotype switching in Staphylococcus aureus lead to high antibiotic persistence and affect therapy success. Proceedings of the National Academy of Sciences of the United States of America, 118(7):e2014920118.

Thiabaud, Amaury; Iten, Anne; Balmelli, Carlo; Senn, Laurence; Troillet, Nicolas; Widmer, Andreas; Flury, Domenica; Schreiber, Peter W; Vázquez, Miriam; Damonti, Lauro; Buettcher, Michael; Vuichard-Gysin, Danielle; Kuhm, Christoph; Cusini, Alexia; Riedel, Thomas; Nussbaumer-Ochsner, Yvonne; Gaudenz, Roman; Heininger, Ulrich; Berger, Christoph; Zucol, Franziska; Bernhard-Stirnemann, Sara; Corti, Natascia; Zimmermann, Petra; Uka, Anita; Niederer-Loher, Anita; Gardiol, Céline; Roelens, Maroussia; Keiser, Olivia (2021). Cohort profile: SARS-CoV-2/COVID-19 hospitalised patients in Switzerland. Swiss Medical Weekly, 151:w20475.

Sendi, Parham; Hasse, Barbara; Frank, Michelle; Flückiger, Ursula; Boggian, Katia; Guery, Benoit; Jeger, Raban; Zbinden, Stephan; Agyeman, Philipp; Knirsch, Walter; Greutmann, Matthias (2021). Infective endocarditis: prevention and antibiotic prophylaxis. Swiss Medical Weekly, 151:w20473.

Diab-El Schahawi, Magda; Zingg, Walter; Vos, Margreet; Humphreys, Hilary; Lopez-Cerero, Lorena; Fueszl, Astrid; Zahar, Jean Ralph; Presterl, Elisabeth (2021). Ultraviolet disinfection robots to improve hospital cleaning: Real promise or just a gimmick? Antimicrobial Resistance and Infection Control, 10:33.

Livio, Françoise; Deutschmann, Elisabeth; Moffa, Giusi; Rrustemi, Flamur; Stader, Felix; Elzi, Luigia; Braun, Dominique L; Calmy, Alexandra; Hachfeld, Anna; Cavassini, Matthias; Tarr, Philip E; Wissel, Kerstin; Battegay, Manuel; Marzolini, Catia; Swiss HIV Cohort Study (2021). Analysis of inappropriate prescribing in elderly patients of the Swiss HIV Cohort Study reveals gender inequity. Journal of Antimicrobial Chemotherapy, 76(3):758-764.

Schmitt, Kira; Kuster, Stefan P; Zurfluh, Katrin; Jud, Rahel S; Sykes, Jane E; Stephan, Roger; Willi, Barbara (2021). Transmission chains of extended-spectrum beta-lactamase-producing enterobacteriaceae at the companion animal veterinary clinic–household interface. Antibiotics, 10(2):171.

Brown, Jennifer A; Mbunkah, Herbert A; Lejone, Thabo I; Ringera, Isaac; Cheleboi, Molisana; Klimkait, Thomas; Metzner, Karin J; Günthard, Huldrych F; Labhardt, Niklaus D; Kouyos, Roger D; Tschumi, Nadine (2021). Emergence of Human Immunodeficiency Virus-1 Drug Resistance During the 3-Month World Health Organization-Recommended Enhanced Adherence Counseling Period in the CART-1 Cohort Study. Open Forum Infectious Diseases, 8(5):ofab046.

Frey, Pascal M; Baer, Julian; Bergada-Pijuan, Judith; Lawless, Conor; Bühler, Philipp K; Kouyos, Roger D; Lemon, Katherine P; Zinkernagel, Annelies S; Brugger, Silvio D (2021). Quantifying Variation in Bacterial Reproductive Fitness: a High-Throughput Method. mSystems, 6(1):e01323-20.

Maurer, Steven M; Kursawe, Laura; Rahm, Stefan; Prinz, Julia; Zinkernagel, Annelies S; Moter, Annette; Kuster, Stefan P; Zbinden, Reinhard; Zingg, Patrick O; Achermann, Yvonne (2021). Cutibacterium avidum resists surgical skin antisepsis in the groin-a potential risk factor for periprosthetic joint infection: a quality control study. Antimicrobial Resistance and Infection Control, 10:27.

Cervia, Carlo; Nilsson, Jakob; Zurbuchen, Yves; Valaperti, Alan; Schreiner, Jens; Wolfensberger, Aline; Raeber, Miro E; Adamo, Sarah; Weigang, Sebastian; Emmenegger, Marc; Hasler, Sara; Bosshard, Philipp P; De Cecco, Elena; Bächli, Esther; Rudiger, Alain; Stüssi-Helbling, Melina; Huber, Lars C; Zinkernagel, Annelies S; Schaer, Dominik J; Aguzzi, Adriano; Kochs, Georg; Held, Ulrike; Probst-Müller, Elsbeth; Rampini, Silvana K; Boyman, Onur (2021). Systemic and mucosal antibody responses specific to SARS-CoV-2 during mild versus severe COVID-19. Journal of Allergy and Clinical Immunology, 147(2):545-557.e9.

Schreiner, Philipp; Mueller, Nicolas J; Fehr, Jan; Maillard, Michel H; Brand, Stephan; Michetti, Pierre; Schoepfer, Alain; Restellini, Sophie; Vulliemoz, Marianne; Vavricka, Stephan R; Juillerat, Pascal; Rogler, Gerhard; Biedermann, Luc (2021). Varicella zoster virus in inflammatory bowel disease patients: what every gastroenterologist should know. Journal of Crohn's & Colitis, 15(2):316-325.

Tepekule, Burcu; Hauser, Anthony; Kachalov, Viacheslav N; Andresen, Sara; Scheier, Thomas; Schreiber, Peter W; Günthard, Huldrych F; Kouyos, Roger D (2021). Assessing the potential impact of transmission during prolonged viral shedding on the effect of lockdown relaxation on COVID-19. PLoS Computational Biology, 17:e1008609.

Kachalov, Viacheslav N; Nguyen, Huyen; Balakrishna, Suraj; Salazar-Vizcaya, Luisa; Sommerstein, Rami; Kuster, Stefan P; Hauser, Anthony; Abel Zur Wiesch, Pia; Klein, Eili; Kouyos, Roger D (2021). Identifying the drivers of multidrug-resistant Klebsiella pneumoniae at a European level. PLoS Computational Biology, 17:e1008446.

Castillo-Mancilla, Jose R; Cavassini, Matthias; Schneider, Marie Paule; Furrer, Hansjakob; Calmy, Alexandra; Battegay, Manuel; Scanferla, Giulia; Bernasconi, Enos; Günthard, Huldrych F; Glass, Tracy R; Swiss HIV Cohort Study (2021). Association of Incomplete Adherence to Antiretroviral Therapy With Cardiovascular Events and Mortality in Virologically Suppressed Persons With HIV: The Swiss HIV Cohort Study. Open Forum Infectious Diseases, 8(2):ofab032.

Posada-Céspedes, Susana; Seifert, David; Topolsky, Ivan; Jablonski, Kim Philipp; Metzner, Karin J; Beerenwinkel, Niko (2021). V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput data. Bioinformatics, 37(12):1673-1680.

Benet, Susana; Gálvez, Cristina; Drobniewski, Francis; et al; Günthard, Huldrych F (2021). Dissemination of Mycobacterium tuberculosis is associated to a SIGLEC1 null variant that limits antigen exchange via trafficking extracellular vesicles. Journal of Extracellular Vesicles, 10(3):e12046.

Surial, Bernard; Bertholet, Nicolas; Daeppen, Jean-Bernard; Darling, Katharine E A; Calmy, Alexandra; Günthard, Huldrych F; Stöckle, Marcel; Bernasconi, Enos; Schmid, Patrick; Rauch, Andri; Furrer, Hansjakob; Wandeler, Gilles; Swiss HIV Cohort Study (2021). The Impact of Binge Drinking on Mortality and Liver Disease in the Swiss HIV Cohort Study. Journal of clinical medicine, 10(2):295.

Hofmaenner, Daniel A; Wendel Garcia, Pedro David; Duvnjak, Branko; Chakrakodi, Bhavya; Maier, Julian D; Huber, Michael; Huder, Jon; Wolfensberger, Aline; Schreiber, Peter W; Schuepbach, Reto A; Zinkernagel, Annelies S; Buehler, Philipp K; Brugger, Silvio D (2021). Bacterial but no SARS-CoV-2 contamination after terminal disinfection of tertiary care intensive care units treating COVID-19 patients. Antimicrobial Resistance and Infection Control, 10:11.

Dietrich, Lna; Abreu De Azevedo, Marta; Wirz, Sebastian; Romer, Tobias; Schmid-Thurneysen, Lisa; Rasch, Helmut; Deml, Michael J; Frhlich, Jrg; Providoli, Romeo; Ernst, Thomas; Seyam, Muhannad; Jusufoska, Meliha; Tolic, Josipa; Suggs, Suzanne; Gallmann, Caesar; Busche, Philipp; Wingeier, Bernhard; Schb, Lukas; Meynard, Anne; Hausmann, Oliver; Flury, Domenica; Rllin, Alexandra; Kovari, Helen; Bguelin, Charles; Hasse, Barbara; Etter, Gisela; Huber, Benedikt; Tarr, Philip (2021). COVID-19, Influenza und grippeähnliche Erkrankungen. Primary and Hospital Care, 21(01):16-20.

Scheier, Thomas; Schibli, Adrian; Eich, Geri; Rüegg, Christian; Kube, Frank; Schmid, Adrian; Karrer, Urs; Wolfensberger, Aline; Sax, Hugo; Schreiber, Peter W (2021). Universal Admission Screening for SARS-CoV-2 Infections among Hospitalized Patients, Switzerland, 2020. Emerging Infectious Diseases, 27(2):404-410.

Romito, Marianna; Juillerat, Alexandre; Kok, Yik Lim; Hildenbeutel, Markus; Rhiel, Manuel; Andrieux, Geoffroy; Geiger, Johannes; Rudolph, Carsten; Mussolino, Claudio; Duclert, Aymeric; Metzner, Karin J; Duchateau, Philippe; Cathomen, Toni; Cornu, Tatjana I (2021). Preclinical Evaluation of a Novel TALEN Targeting CCR5 Confirms Efficacy and Safety in Conferring Resistance to HIV-1 Infection. Biotechnology Journal, 16(1):2000023.

Wenk, Benjamin M; Mbunkah, Herbert A; Nsanwe, Ndi N; Mbu, Eyongetah T; Besong, Lydia M; Sama, Bella A; Orock, Emmanuel; Leemann, Christine; Metzner, Karin J (2021). Prevalence of integrase strand transfer inhibitor resistance mutations in antiretroviral-naive HIV-1-infected individuals in Cameroon. Journal of Antimicrobial Chemotherapy, 76(1):124-129.

Maccio, Umberto; Zinkernagel, Annelies S; Shambat, Srikanth Mairpady; Zeng, Xiankun; Cathomas, Gieri; Ruschitzka, Frank; Schuepbach, Reto A; Moch, Holger; Varga, Zsuzsanna (2021). SARS-CoV-2 leads to a small vessel endotheliitis in the heart. EBioMedicine, 63:103182.

Andronic, Octavian; Achermann, Yvonne; Jentzsch, Thorsten; Bearth, Flurin; Schweizer, Andreas; Wieser, Karl; Fucentese, Sandro F; Rahm, Stefan; Zinkernagel, Annelies S; Zingg, Patrick O (2021). Factors affecting outcome in the treatment of streptococcal periprosthetic joint infections: results from a single-centre retrospective cohort study. International orthopaedics, 45(1):57-63.

Schweizer, Tiziano A; Mairpady Shambat, Srikanth; Vulin, Clement; Hoeller, Sylvia; Acevedo, Claudio; Huemer, Markus; Gomez-Mejia, Alejandro; Chang, Chun-Chi; Baum, Jeruscha; Hertegonne, Sanne; Hitz, Eva; Scheier, Thomas C; Hofmaenner, Daniel A; Buehler, Philipp K; Moch, Holger; Schuepbach, Reto A; Brugger, Silvio D; Zinkernagel, Annelies S (2021). Blunted sFasL signalling exacerbates TNF-driven neutrophil necroptosis in critically ill COVID-19 patients. Clinical & translational immunology, 10(12):e1357.

Boumasmoud, Mathilde. Epidemiological and Evolutionary Insights from the Characterization of Bacterial Populations in Clinical Settings. 2021, University of Zurich, Faculty of Science.

Wolfensberger, Aline. Hospital-acquired Pneumonia - Surveillance and Monitoring of Adherence to Prevention Measures. 2021, University of Zurich, Faculty of Medicine.

Husmann, Lars; Huellner, Martin W; Gruenig, Hannes; Eberhard, Nadia; Mestres, Carlos A; Rancic, Zoran; Hasse, Barbara (2021). Impact of PET/CT among patients with suspected mycotic aortic aneurysms. PLoS ONE, 16(10):e0258702.

Huemer, Markus. Staphylococcus aureus Persister Formation as an Adaptive Response During Infection – Sleeping Through the War. 2021, University of Zurich, Faculty of Science.

2020

Sommerstein, Rami; Marschall, Jonas; Atkinson, Andrew; Surbek, Daniel; Dominguez-Bello, Maria Gloria; Troillet, Nicolas; Widmer, Andreas F; SwissNoso (2020). Antimicrobial prophylaxis administration after umbilical cord clamping in cesarean section and the risk of surgical site infection: a cohort study with 55,901 patients. Antimicrobial Resistance and Infection Control, 9:201.

Neff, Andrina; Chok, Lionel; von Both, Ulrich; Matt, Ulrich; Tarnutzer, Andrea; Andreoni, Federica; van der Linden, Mark; Plock, Jan A; Buehler, Philipp Karl; Brugger, Silvio Daniel; Schuepbach, Reto Andreas; Zbinden, Reinhard; Zinkernagel, Annelies Sofie (2020). Characterisation of clinical manifestations of and treatment strategies for invasive beta-haemolytic streptococcal infections in a Swiss tertiary hospital. Swiss Medical Weekly, 150:w20378.

Huemer, Markus; Mairpady Shambat, Srikanth; Brugger, Silvio D; Zinkernagel, Annelies S (2020). Antibiotic resistance and persistence—Implications for human health and treatment perspectives. EMBO Reports, 21(12):0.

Dietrich, Léna G; Abreu De Azevedo, Marta; Wirz, Sebastian; Romer, Tobias; Schmid-Thurneysen, Lisa; Rasch, Helmut; Deml, Michael J; Frhlich, Jrg; Providoli, Romeo; Ernst, Thomas; Seyam, Muhannad; Jusufoska, Meliha; Tolic, Josipa; Suggs, Suzanne; Gallmann, Caesar; Busche, Philipp; Wingeier, Bernhard; Schb, Lukas; Meynard, Anne; Hausmann, Oliver; Flury, Domenica; Rllin, Alexandra; Kovari, Helen; Bguelin, Charles; Hasse, Barbara; Etter, Gisela; Huber, Benedikt; Tarr, Philip (2020). COVID-19, Influenza und grippe-ähnliche Erkrankungen. Primary and Hospital Care, 20(12):377-382.

Weissberg, Dana; Böni, Jürg; Rampini, Silvana K; Kufner, Verena; Zaheri, Maryam; Schreiber, Peter W; Abela, Irene A; Huber, Michael; Sax, Hugo; Wolfensberger, Aline (2020). Does respiratory co-infection facilitate dispersal of SARS-CoV-2? investigation of a super-spreading event in an open-space office. Antimicrobial Resistance and Infection Control, 9:191.

Keller, Emanuela; Brandi, Giovanna; Winklhofer, Sebastian; Imbach, Lukas L; Kirschenbaum, Daniel; Frontzek, Karl; Steiger, Peter; Dietler, Sabeth; Haeberlin, Marcellina; Willms, Jan; Porta, Francesca; Waeckerlin, Adrian; Huber, Michael; Abela, Irene A; Lutterotti, Andreas; Stippich, Christoph; Globas, Christoph; Varga, Zsuzsanna; Jelcic, Ilijas (2020). Large and small cerebral vessel involvement in severe COVID-19: detailed clinical workup of a case series. Stroke, 51(12):3719-3722.

Ulyte, Agne; Radtke, Thomas; Abela, Irène A; Haile, Sarah R; Braun, Julia; Jung, Ruedi; Berger, Christoph; Trkola, Alexandra; Fehr, Jan; Puhan, Milo A; Kriemler, Susi (2020). Seroprevalence and immunity of SARS-CoV-2 infection in children and adolescents in schools in Switzerland: design for a longitudinal, school-based prospective cohort study. International Journal of Public Health, 65(9):1549-1557.

Kusejko, Katharina; Günthard, Huldrych F; Olson, Gregory S; Zens, Kyra; Darling, Katharine; Khanna, Nina; Furrer, Hansjakob; Vetter, Pauline; Bernasconi, Enos; Vernazza, Pietro; Hoffmann, Matthias; Kouyos, Roger D; Nemeth, Johannes; Swiss HIV Cohort Study (2020). Diagnosis of latent tuberculosis infection is associated with reduced HIV viral load and lower risk for opportunistic infections in people living with HIV. PLoS Biology, 18(12):e3000963.

Bons, Eva; Leemann, Christine; Metzner, Karin J; Regoes, Roland R (2020). Long-term experimental evolution of HIV-1 reveals effects of environment and mutational history. PLoS Biology, 18(12):e3001010.

Mayer, Dieter O; Hasse, Barbara (2020). Gefäß(endo)protheseninfektionen: Erfahrungen und Lehren aus 8 Jahren prospektiver Begleitung der VASGRA-Kohorte am Universitätsspital Zürich. Gefässchirurgie, 25(8):621-631.

Braun, Dominique L; Scheier, Thomas; Ledermann, Ulrich; Flepp, Markus; Metzner, Karin J; Böni, Jürg; Günthard, Huldrych F (2020). Emergence of resistance to integrase strand transfer inhibitors during Dolutegravir containing triple-therapy in a treatment-experienced patient with pre-existing M184V/I mutation. Viruses, 12(11):1330.

Sculier, Delphine; Wandeler, Gilles; Yerly, Sabine; Marinosci, Annalisa; Stoeckle, Marcel; Bernasconi, Enos; Braun, Dominique L; Vernazza, Pietro; Cavassini, Matthias; Buzzi, Marta; Metzner, Karin J; Decosterd, Laurent A; Günthard, Huldrych F; Schmid, Patrick; Limacher, Andreas; Egger, Matthias; Calmy, Alexandra (2020). Efficacy and safety of dolutegravir plus emtricitabine versus standard ART for the maintenance of HIV-1 suppression: 48-week results of the factorial, randomized, non-inferiority SIMPL'HIV trial. PLoS Medicine, 17(11):e1003421.

Wan, Chenjie; Bachmann, Nadine; Mitov, Venelin; Blanquart, François; Céspedes, Susana Posada; Turk, Teja; Neumann, Kathrin; Beerenwinkel, Niko; Bogojeska, Jasmina; Fellay, Jacques; Roth, Volker; Böni, Jürg; Perreau, Matthieu; Klimkait, Thomas; Yerly, Sabine; Battegay, Manuel; Walti, Laura; Calmy, Alexandra; Vernazza, Pietro; Bernasconi, Enos; Cavassini, Matthias; Metzner, Karin J; Günthard, Huldrych F; Kouyos, Roger D; Swiss HIV Cohort Study (2020). Heritability of the HIV-1 reservoir size and decay under long-term suppressive ART. Nature Communications, 11(1):5542.

Chimukangara, Benjamin; Giandhari, Jennifer; Lessells, Richard; Yende-Zuma, Nonhlanhla; Sartorius, Benn; Samuel, Reshmi; Khanyile, Khulekani S; Stray-Pedersen, Babill; Moodley, Pravi; Metzner, Karin J; Padayatchi, Nesri; Naidoo, Kogieleum; De Oliveira, Tulio (2020). Impact of pretreatment low-abundance HIV-1 drug-resistant variants on virological failure among HIV-1/TB-co-infected individuals. Journal of Antimicrobial Chemotherapy, 75(11):3319-3326.

Carlisle, Louisa A; Turk, Teja; Metzner, Karin J; Mbunkah, Herbert A; Shah, Cyril; Böni, Jürg; Huber, Michael; Braun, Dominique L; Fehr, Jan; Salazar-Vizcaya, Luisa; Rauch, Andri; Yerly, Sabine; Nguyen, Aude; Cavassini, Matthias; Stoeckle, Marcel; Vernazza, Pietro; Bernasconi, Enos; Günthard, Huldrych F; Kouyos, Roger D (2020). HCV genetic diversity can be used to infer infection recency and time since Iifection. Viruses, 12(11):1241.

Saag, Michael S; Gandhi, Rajesh T; Hoy, Jennifer F; Landovitz, Raphael J; Thompson, Melanie A; Sax, Paul E; Smith, Davey M; Benson, Constance A; Buchbinder, Susan P; Del Rio, Carlos; Eron, Joseph J; Fätkenheuer, Gerd; Günthard, Huldrych F; Molina, Jean-Michel; Jacobsen, Donna M; Volberding, Paul A (2020). Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2020 Recommendations of the International Antiviral Society-USA Panel. JAMA : the Journal of the American Medical Association, 324(16):1651-1669.

Schweizer, Tiziano A; Shambat, Srikanth Mairpady; Haunreiter, Vanina Dengler; Mestres, Carlos A; Weber, Alberto; Maisano, Francesco; Zinkernagel, Annelies S; Hasse, Barbara (2020). Polyester vascular graft material and risk for intracavitary thoracic vascular graft infection. Emerging Infectious Diseases, 26(10):2448-2452.

Swiss Transplant Cohort Study; van Delden, Christian; Stampf, Susanne; Hirsch, Hans H; Manuel, Oriol; Meylan, Pascal; Cusini, Alexia; Hirzel, Cédric; Khanna, Nina; Weisser, Maja; Garzoni, Christian; Boggian, Katja; Berger, Christoph; Nadal, David; Koller, Michael; Saccilotto, Ramon; Mueller, Nicolas J (2020). Burden and Timeline of Infectious Diseases in the First Year After Solid Organ Transplantation in the Swiss Transplant Cohort Study. Clinical Infectious Diseases, 71(7):e159-e169.

Mocroft, A; Neesgard, B; Zangerle, R; Rieger, A; Castagna, A; Spagnuolo, V; et al; Günthard, H F; Rauch, Anita (2020). Treatment outcomes of integrase inhibitors, boosted protease inhibitors and nonnucleoside reverse transcriptase inhibitors in antiretroviral-naïve persons starting treatment. HIV Medicine, 21(9):599-606.

Surial, Bernard; Béguelin, Charles; Chave, Jean-Philippe; Stöckle, Marcel; Boillat-Blanco, Noémie; Doco-Lecompte, Thanh; Bernasconi, Enos; Fehr, Jan; Günthard, Huldrych F; Schmid, Patrick; Walti, Laura N; Furrer, Hansjakob; Rauch, Andri; Wandeler, Gilles; Swiss HIV Cohort Study (2020). Brief Report: Switching From TDF to TAF in HIV/HBV-Coinfected Individuals With Renal Dysfunction-A Prospective Cohort Study. Journal of Acquired Immune Deficiency Syndromes, 85(2):227-232.

Tschopp, J; L'Huillier, A G; Mombelli, M; Mueller, N J; Khanna, N; Garzoni, C; Meloni, D; Papadimitriou-Olivgeris, M; Neofytos, D; Hirsch, H H; Schuurmans, M M; Müller, T; Berney, T; Steiger, J; Pascual, M; Manuel, O; van Delden, C; Swiss Transplant Cohort Study (2020). First experience of SARS-CoV-2 infections in solid organ transplant recipients in the Swiss Transplant Cohort Study. American Journal of Transplantation, 20(10):2876-2882.

Schweiger, A; Kuster, S P; Maag, J; Züllig, S; Bertschy, S; Bortolin, E; John, G; Sax, H; Limacher, A; Atkinson, A; Schwappach, D; Marschall, J (2020). Impact of an evidence-based intervention on urinary catheter utilization, associated process indicators, and infectious and non-infectious outcomes. Journal of Hospital Infection, 106(2):364-371.

Tarr, Philip E; Ledergerber, Bruno; Calmy, Alexandra; Doco-Lecompte, Thanh; Schoepf, Isabella C; Marzel, Alex; Weber, Rainer; Kaufmann, Philipp A; Nkoulou, René; Buechel, Ronny R; Kovari, Helen; Swiss HIV Cohort Study (2020). Longitudinal Progression of Subclinical Coronary Atherosclerosis in Swiss HIV-Positive Compared With HIV-Negative Persons Undergoing Coronary Calcium Score Scan and CT Angiography. Open Forum Infectious Diseases, 7(10):ofaa438.

Bär, Julian; Boumasmoud, Mathilde; Kouyos, Roger D; Zinkernagel, Annelies S; Vulin, Clément (2020). Efficient microbial colony growth dynamics quantification with ColTapp, an automated image analysis application. Scientific Reports, 10:16084.

Osuch, Sylwia; Laskus, Tomasz; Berak, Hanna; Perlejewski, Karol; Metzner, Karin J; Paciorek, Marcin; Radkowski, Marek; Caraballo Cortés, Kamila (2020). Decrease of T-cells exhaustion markers programmed cell death-1 and T-cell immunoglobulin and mucin domain-containing protein 3 and plasma IL-10 levels after successful treatment of chronic hepatitis C. Scientific Reports, 10(1):16060.

Sobieraj, Anna M; Huemer, Markus; Zinsli, Léa V; Meile, Susanne; Keller, Anja P; Röhrig, Christian; Eichenseher, Fritz; Shen, Yang; Zinkernagel, Annelies S; Loessner, Martin J; Schmelcher, Mathias (2020). Engineering of long-circulating peptidoglycan hydrolases enables efficient treatment of systemic Staphylococcus aureus infection. mBio, 11(5):e01781-20.

Scotoni, Manuela; Koch, Julian; Julian, Timothy R; Clack, Lauren; Pitol, Ana K; Wolfensberger, Aline; Grass, Robert N; Sax, Hugo (2020). Silica nanoparticles with encapsulated DNA (SPED) - a novel surrogate tracer for microbial transmission in healthcare. Antimicrobial Resistance and Infection Control, 9:152.

Brugger, Silvio D; Eslami, Sara M; Pettigrew, Melinda M; Escapa, Isabel F; Henke, Matthew T; Kong, Yong; Lemon, Katherine P (2020). Dolosigranulum pigrum cooperation and competition in human nasal microbiota. mSphere, 5(5):e00852-20.

Waldmann, Isabelle; Schmid, Tobias; Prinz, Julia; Mühleisen, Beda; Zbinden, Reinhard; Imhof, Laurence; Achermann, Yvonne (2020). Photodynamic therapy improves skin antisepsis as a prevention strategy in arthroplasty procedures: A pilot study. Photodiagnosis and Photodynamic Therapy, 31:101941.

Gryaznov, Dmitry; Chammartin, Frédérique; Stoeckle, Marcel; Anagnostopoulos, Alexia; Braun, Dominique Laurent; Furrer, Hansjakob; Boillat-Blanco, Noémie; Bernasconi, Enos; Schmid, Patrick; Nordmann, Alain; Bucher, Heiner C (2020). Smartphone app and carbon monoxide self-monitoring support for smoking cessation: a randomized controlled trial nested into the Swiss HIV Cohort Study. Journal of Acquired Immune Deficiency Syndromes, 85(1):e8-e11.

Thorball, Christian W; Borghesi, Alessandro; Bachmann, Nadine; Von Siebenthal, Chantal; Vongrad, Valentina; Turk, Teja; Neumann, Kathrin; Beerenwinkel, Niko; Bogojeska, Jasmina; Roth, Volker; Kok, Yik Lim; Parbhoo, Sonali; Wieser, Mario; Böni, Jürg; Perreau, Matthieu; Klimkait, Thomas; Yerly, Sabine; Battegay, Manuel; Rauch, Andri; Schmid, Patrick; Bernasconi, Enos; Cavassini, Matthias; Kouyos, Roger D; Günthard, Huldrych F; Metzner, Karin J; Fellay, Jacques; Swiss HIV Cohort Study (2020). Host genomics of the HIV-1 reservoir size and its decay rate during suppressive antiretroviral treatment. Journal of Acquired Immune Deficiency Syndromes, 85(4):517-524.

Wolfensberger, Aline; Clack, Lauren; Stefanie, von Felten; Kusejko, Katharina; Hesse, Mirjam Faes; Jakob, Werner; Saleschus, Dirk; Meier, Marie-Theres; Kouyos, Roger; Held, Leonhard; Sax, Hugo (2020). Implementation and evaluation of a care bundle for prevention of non-ventilator-associated hospital-acquired pneumonia (nvHAP) - a mixed-methods study protocol for a hybrid type 2 effectiveness-implementation trial. BMC Infectious Diseases, 20(1):603.

Combes, Jean-Damien; Clifford, Gary M; Günthard, Huldrych F; Hauser, Christoph; Darling, Katharine E A; Valladares, Pablo; Battegay, Manuel; Waldeck, Frederike; Bernasconi, Enos; Bertisch, Barbara; Hirsch, Hans H; Brenner, Nicole; Waterboer, Tim; Scherrer, Alexandra U; Swiss HIV Cohort Study (2020). Antibodies against HPV16E6 oncoprotein in the Swiss HIV cohort study: Kinetics and anal cancer risk prediction. International Journal of Cancer, 147(3):757-765.

Vu, Diem-Lan; Dayer, Julie-Anne; Masouridi-Levrat, Stavroula; Combescure, Christophe; Boely, Elsa; Khanna, Nina; Mueller, Nicolas J; Kleber, Martina; Medinger, Michael; Halter, Joerg; Passweg, Jakob; Müller, Antonia M; Schanz, Urs; Chalandon, Yves; Neofytos, Dionysios; van Delden, Christian; Kaiser, Laurent; Swiss Transplant Cohort Study (2020). Microbiologically documented infections after adult allogeneic hematopoietic cell transplantation: a 5-year analysis within the Swiss Transplant Cohort study. Transplant Infectious Disease, 22(4):e13289.

Stienen, Martin N; Sprengel, Kai; Butsch, Raphael; Achermann, Yvonne; Wolfensberger, Aline; Regli, Luca; Bellut, David (2020). Tuberkulöse Spondylitis - Diagnose und Management. Praxis, 109(10):775-787.

Hameister, Erik; Stolz, Sebastian M; Fuhrer, Yvonne; Thienemann, Friedrich; Schaer, Dominik J; Nemeth, Johannes; Schuepbach, Reto A; Goede, Jeroen; Reinhart, Sophie; Schmidt, Adrian; Kahraman, Abdullah; Schmid, Mathias; Moch, Holger; Zoche, Martin; Manz, Markus G; Balabanov, Stefan; Boettcher, Steffen (2020). Clonal hematopoiesis in hospitalized elderly patients with COVID-19. HemaSphere, 4(4):e453.

Amodio, Enrica; Kuster, Stefan P; Garzoni, Christian; Zinkernagel, Annelies S; Sax, Hugo; Wolfensberger, Aline (2020). Disinfecting noncritical medical equipment-Effectiveness of hydrogen peroxide dry mist as an adjunctive method. American Journal of Infection Control, 48(8):897-902.

McHugh, Donal; Myburgh, Renier; Caduff, Nicole; Spohn, Michael; Kok, Yik Lim; Keller, Christian W; Murer, Anita; Chatterjee, Bithi; Rühl, Julia; Engelmann, Christine; Chijioke, Obinna; Quast, Isaak; Shilaih, Mohaned; Strouvelle, Victoria P; Neumann, Kathrin; Menter, Thomas; Dirnhofer, Stephan; Lam, Janice K P; Hui, Kwai F; Bredl, Simon; Schlaepfer, Erika; Sorce, Silvia; Zbinden, Andrea; Capaul, Riccarda; Lünemann, Jan D; Aguzzi, Adriano; Chiang, Alan K S; Kempf, Werner; Trkola, Alexandra; Metzner, Karin J; et al (2020). EBV renders B cells susceptible to HIV-1 in humanized mice. Life Science Alliance, 3(8):e202000640.

Fischer, Lena; Gültekin, Nejla; Kaelin, Marisa B; Fehr, Jan; Schlagenhauf, Patricia (2020). Rising temperature and its impact on receptivity to malaria transmission in Europe: A systematic review. Travel Medicine and Infectious Disease, 36:101815.

The Respond Study Group (2020). How to RESPOND to Modern Challenges for People Living with HIV: A Profile for a New Cohort Consortium. Microorganisms, 8(8):1164.

Kusejko, Katharina; Salazar-Vizcaya, Luisa; Braun, Dominique L; Tarr, Philip E; Bernasconi, Enos; Doco-Lecompte, Thanh; Cavassini, Matthias; Schmid, Patrick; Du Pasquier, Renaud; Hauser, Christoph; Günthard, Huldrych F; Kouyos, Roger D; Swiss HIV Cohort Study (2020). Self-reported neurocognitive impairment in people living with HIV: Characterizing clusters of patients with similar changes in self-reported neurocognitive impairment 2013-2017 in the Swiss HIV Cohort Study. Clinical Infectious Diseases, 71(3):637-644.

Osuch, Sylwia; Metzner, Karin J; Caraballo Cortés, Kamila (2020). Reversal of T cell exhaustion in chronic HCV infection. Viruses, 12(8):799.

Surial, Bernard; Ledergerber, Bruno; Calmy, Alexandra; Cavassini, Matthias; Günthard, Huldrych F; Kovari, Helen; Stöckle, Marcel; Bernasconi, Enos; Schmid, Patrick; Fux, Christoph A; Furrer, Hansjakob; Rauch, Andri; Wandeler, Gilles; Swiss HIV Cohort Study (2020). Changes in renal function after switching from TDF to TAF in HIV-infected individuals: a prospective cohort study. Journal of Infectious Diseases, 222(4):637-645.

Van Hemelrijck, Mathias; Frank, Michelle; Zinkernagel, Annelies; Buechel, Ronny; Sromicki, Juri; Wilhelm, Markus; Klein, Holger; Hasse, Barbara; Mestres, Carlos; Authorea (2020). Sternectomy for Candida albicans sternal osteomyelitis after left ventricular assist device implantation. Authorea: John Wiley & Sons, Inc.

Nemeth, Johannes; Olson, Gregory S; Rothchild, Alissa C; Jahn, Ana N; Mai, Dat; Duffy, Fergal J; Delahaye, Jared L; Srivatsan, Sanjay; Plumlee, Courtney R; Urdahl, Kevin B; Gold, Elizabeth S; Aderem, Alan; Diercks, Alan H (2020). Contained Mycobacterium tuberculosis infection induces concomitant and heterologous protection. PLoS Pathogens, 16(7):e1008655.

Sommerstein, Rami; Fux, Christoph Andreas; Vuichard-Gysin, Danielle; Abbas, Mohamed; Marschall, Jonas; Balmelli, Carlo; Troillet, Nicolas; Harbarth, Stephan; Schlegel, Matthias; Widmer, Andreas; SwissNoso (2020). Risk of SARS-CoV-2 transmission by aerosols, the rational use of masks, and protection of healthcare workers from COVID-19. Antimicrobial Resistance and Infection Control, 9:100.

Kaelin, M B; Kuster, S P; Hasse, B; Schulthess, B; Imkamp, F; Halbe, M; Sander, P; Sax, H; Schreiber, P W (2020). Diversity of nontuberculous mycobacteria in Heater-Cooler Devices - results from prospective surveillance. Journal of Hospital Infection, 105(3):480-485.

Courlet, Perrine; Livio, Françoise; Alves Saldanha, Susana; Scherrer, Alexandra; Battegay, Manuel; Cavassini, Matthias; Stoeckle, Marcel; Decosterd, Laurent Arthur; Marzolini, Catia; Swiss HIV Cohort Study (2020). Real-life management of drug-drug interactions between antiretrovirals and statins. Journal of Antimicrobial Chemotherapy, 75(7):1972-1980.

Manka, Robert; Karolyi, Mihaly; Polacin, Malgorzata; Holy, Erik W; Nemeth, Johannes; Steiger, Peter; Schuepbach, Reto A; Zinkernagel, Annelies S; Alkadhi, Hatem; Mehra, Mandeep R; Ruschitzka, Frank (2020). Myocardial edema in COVID-19 on cardiac MRI. Journal of Heart and Lung Transplantation, 39(7):730-732.

Olearo, Flaminia; Kronig, Ilona; Masouridi-Levrat, Stavroula; Chalandon, Yves; Khanna, Nina; Passweg, Jakob; Medinger, Michael; Mueller, Nicolas J; Schanz, Urs; Van Delden, Christian; Neofytos, Dionysios (2020). Optimal treatment duration of Pseudomonas aeruginosa infections in allogeneic hematopoietic cell transplant recipients. Open Forum Infectious Diseases, 7(7):ofaa246.

Schmid, Bettina; Hausmann, Oliver; Hitzl, Wolfgang; Achermann, Yvonne; Wuertz-Kozak, Karin (2020). The role of Cutibacterium acnes in intervertebral disc inflammation. Biomedicines, 8(7):186.

Rampini, S K; Wolfensberger, A; Sax, H; Thienemann, F (2020). Preventing intrahospital transmission of COVID-19: Experience from the University Hospital Zurich in Switzerland. South African Medical Journal, 110(8):709-710.

Wu, Albert W; Buckle, Peter; Haut, Elliott R; Bellandi, Tomasso; Koizumi, Shunzo; Mair, Alpana; Øvretveit, John; Power, Chris; Sax, Hugo; Thomas, Eric J; Newman-Toker, David; Vincent, Charles (2020). Supporting the Emotional Well-being of Health Care Workers During the COVID-19 Pandemic. Journal of Patient Safety and Risk Management, 25(3):93-96.

Egli, Adrian; Battegay, Manuel; Büchler, Andrea C; Bühlmann, Peter; Calandra, Thierry; Eckert, Philippe; Furrer, Hansjakob; Greub, Gilbert; Jakob, Stephan M; Kaiser, Laurent; Leib, Stephen L; Marsch, Stephan; Meinshausen, Nicolai; Pagani, Jean-Luc; Pugin, Jerome; Rätsch, Gunnar; Schrenzel, Jacques; Schüpbach, Reto; Siegemund, Martin; Zamboni, Nicola; Zbinden, Reinhard; Zinkernagel, Annelies; Borgwardt, Karsten (2020). SPHN/PHRT: forming a Swiss-wide infrastructure for data-driven sepsis research. Studies in Health Technology and Informatics, 270:1163-1167.

Hersberger, Martin; Schlaepfer, Erika; Buehler, Marco; Bochud, Pierre-Yves; Vernazza, Pietro; Marti-Jaun, Jacqueline; Nemeth, Johannes; Zwahlen, Marcel; Schmidlin, Kurt; Speck, Roberto F (2020). Polymorphisms of SOCS-1 are associated with a rapid HIV progression rate. Journal of Acquired Immune Deficiency Syndromes, 84(2):189-195.

Husmann, Lars; Huellner, Martin W; Hasse, Barbara (2020). Therapy control in a patient with an inflammatory abdominal aneurysm: potential pitfalls in PET/CT imaging. Clinical Nuclear Medicine, 45(6):e288-e289.

Weigelt, Lizzy; Plate, Andreas; Stadler, Laura; Sutter, Reto; Frustaci, Dario; Zbinden, Reinhard; Zingg, Patrick O; Gerber, Christian; Achermann, Yvonne (2020). Alpha-defensin lateral flow test does not appear to be useful in predicting shoulder periprosthetic joint infections. International orthopaedics, 44(6):1023-1029.

Courlet, Perrine; Alves Saldanha, Susana; Cavassini, Matthias; Marzolini, Catia; Choong, Eva; Csajka, Chantal; Günthard, Huldrych F; André, Pascal; Buclin, Thierry; Desfontaine, Vincent; Decosterd, Laurent Arthur (2020). Development and validation of a multiplex UHPLC-MS/MS assay with stable isotopic internal standards for the monitoring of the plasma concentrations of the antiretroviral drugs bictegravir, cabotegravir, doravirine, and rilpivirine in people living with HIV. Journal of Mass Spectrometry, 55(6):e4506.

Husmann, Lars; Huellner, Martin W; Ledergerber, Bruno; Eberhard, Nadia; Kaelin, Marisa B; Anagnostopoulos, Alexia; Kudura, Ken; Burger, Irene A; Mestres, Carlos-A; Rancic, Zoran; Hasse, Barbara (2020). Diagnostic accuracy of PET/CT and contrast enhanced CT in patients with suspected infected aortic aneurysms. European Journal of Vascular and Endovascular Surgery, 59(6):972-981.

Metral, M; Nadin, I; Locatelli, I; Tarr, P E; Calmy, A; Kovari, H; Brugger, P; Cusini, A; Gutbrod, K; Schmid, P; Schwind, M; Kunze, U; Di Benedetto, C; Pignatti, R; Du Pasquier, R; Darling, K E A; Cavassini, M (2020). How helpful are the European AIDS Clinical Society cognitive screening questions in predicting cognitive impairment in an aging, well-treated HIV-positive population? HIV Medicine, 21(5):342-348.

Roth, Jan A; Ballouz, Tala; Kouyos, Roger D; Battegay, Manuel (2020). Early off-label treatment during pandemics? A dilemma. Swiss Medical Weekly, 150:w20281.

Varga, Zsuzsanna; Flammer, Andreas J; Steiger, Peter; Haberecker, Martina; Andermatt, Rea; Zinkernagel, Annelies; Mehra, Mandeep R; Scholkmann, Felix; Schüpbach, Reto; Ruschitzka, Frank; Moch, Holger (2020). Electron microscopy of SARS-CoV-2: a challenging task – Authors' reply. The Lancet, 395(10238):e100.

Varga, Zsuzsanna; Flammer, Andreas J; Steiger, Peter; Haberecker, Martina; Andermatt, Rea; Zinkernagel, Annelies S; Mehra, Mandeep R; Schuepbach, Reto A; Ruschitzka, Frank; Moch, H (2020). Endothelial cell infection and endotheliitis in COVID-19. The Lancet, 395(10234):1417-1418.

Widmer, Lucien; Kaniewska, Malwina; Hasse, Barbara; Mullhaupt, Beat; Pfammatter, Thomas (2020). Infected Extrahepatic Splanchnic Venous Stent(-Grafts): Clinical Presentation, Imaging, and Treatment in Three Patients. Journal of Vascular and Interventional Radiology, 31(5):754-758.

Sax, Hugo; Schreiber, Peter W; Clack, Lauren; Ratz, David; Saint, Sanjay; Greene, M Todd; Kuster, Stefan P (2020). Preventing healthcare-associated infection in Switzerland: Results of a national survey. Infection Control and Hospital Epidemiology, 41(5):597-600.

Meerwein, Milton; Tarnutzer, Andrea; Böni, Michelle; Van Bambeke, Françoise; Hombach, Michael; Zinkernagel, Annelies S (2020). Increased azithromycin susceptibility of multidrug-resistant gram-negative bacteria on RPMI-1640 agar assessed by disk diffusion testing. Antibiotics, 9(5):218.

Mbunkah, Herbert A; Bertagnolio, Silvia; Hamers, Raph L; Hunt, Gillian; Inzaule, Seth; Rinke de Wit, Tobias F; Paredes, Roger; Parkin, Neil T; Jordan, Michael R; Metzner, Karin J (2020). Low-abundance drug-resistant HIV-1 variants in antiretroviral drug-naïve individuals: A systematic review of detection methods, prevalence, and clinical impact. Journal of Infectious Diseases, 221(10):1584-1597.

Harro, Janette M; Shirtliff, Mark E; Arnold, William; Kofonow, Jennifer M; Dammling, Chad; Achermann, Yvonne; Brao, Kristen; Parvizi, Javad; Leid, Jeff G (2020). Development of a novel and rapid antibody-based diagnostic for chronic staphylococcus aureus Infections based on biofilm antigens. Journal of Clinical Microbiology, 58(5):e01414-e01419.

Schretzenmayr, Ludwig; Hasse, Barbara; Mestres, Carlos; Gutschow, Christian A; Rost, Bert; Brunner, Jakob; Brack, Thomas (2020). Chronischer Graft-Infekt nach Versorgung einer Aortendissektion. Swiss Medical Forum:296-299.

Röhrig, Christian; Huemer, Markus; Lorgé, Dominique; Luterbacher, Samuel; Phothaworn, Preeda; Schefer, Christopher; Sobieraj, Anna M; Zinsli, Léa V; Mairpady Shambat, Srikanth; Leimer, Nadja; Keller, Anja P; Eichenseher, Fritz; Shen, Yang; Korbsrisate, Sunee; Zinkernagel, Annelies S; Loessner, Martin J; Schmelcher, Mathias (2020). Targeting hidden pathogens: cell-penetrating enzybiotics eradicate intracellular drug-resistant staphylococcus aureus. mBio, 11(2):e00209-e00220.

Hampel, B; Kusejko, K; Kouyos, R D; Böni, J; Flepp, M; Stöckle, M; Conen, A; Béguelin, C; Künzler-Heule, P; Nicca, D; Schmidt, A J; Nguyen, H; Delaloye, J; Rougemont, M; Bernasconi, E; Rauch, A; Günthard, H F; Braun, D L; Fehr, J; Swiss HIV Cohort Study (2020). Chemsex drugs on the rise: a longitudinal analysis of the Swiss HIV Cohort Study from 2007 to 2017. HIV Medicine, 21(4):228-239.

Kusejko, Katharina; Marzel, Alex; Nguyen, Huyen; Chaudron, Sandra E; Bachmann, Nadine; Weber, Rainer; Bruggmann, Philip; Roth, Jan A; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Bregenzer, Andrea; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Perreau, Matthieu; Walti, Laura N; Günthard, Huldrych F; Kouyos, Roger D; Swiss HIV Cohort Study (2020). Differences in social and mental well-being of long-term survivors among people who inject drugs and other participants in the Swiss HIV Cohort Study: 1980-2018. Antiviral Therapy, 25(1):43-54.

Buckrell, Steven; Coleman, Brenda L; McNeil, Shelly A; Katz, Kevin; Muller, Matthew P; Simor, Andrew; Loeb, Mark; Powis, Jeff; Kuster, Stefan P; Di Bella, Julia M; Coleman, Kristy K L; Drews, Steven J; Kohler, Philipp; McGeer, Allison (2020). Sources of viral respiratory infections in Canadian acute care hospital healthcare personnel. Journal of Hospital Infection, 104(4):513-521.

Greiter, Beat M; Kahlert, Christian R; Eberhard, Nadia; Sultan-Beyer, Leila; Berger, Christoph; Paioni, Paolo (2020). Lymphocyte Subsets in HIV-Exposed Uninfected Infants: The Impact of Neonatal Postexposure Prophylaxis With Zidovudine. Open Forum Infectious Diseases, 7(4):ofaa108.

Heim, D; Kuster, S P; Willi, Barbara (2020). Antibiotikaresistente Bakterien bei Hund und Katze: Empfehlungen für Halterinnen und Halter. Schweizer Archiv für Tierheilkunde, 162(3):141-151.

Lauk, Olivia; Fulchini, Rosamaria; Hasse, Barbara Katharina; Schmitt-Opitz, Isabelle (2020). Aortobronchial fistula and Listeria endograft infection after repeated T/EVAR: a rare combination. BMJ Case Reports, 13(3):e229924.

Endimiani, Andrea; Brilhante, Michael; Bernasconi, Odette J; Perreten, Vincent; Schmidt, Janne S; Dazio, Valentina; Nigg, Aurélien; Gobeli Brawand, Stefanie; Kuster, Stefan P; Schuller, Simone; Willi, Barbara (2020). Employees of Swiss veterinary clinics colonized with epidemic clones of carbapenemase-producing Escherichia coli. Journal of Antimicrobial Chemotherapy, 75(3):766-768.

Bögeholz, Jan; Russkamp, Norman F; Wilk, Christian M; Gourri, Elise; Haralambieva, Eugenia; Schanz, Urs; Mueller, Nicolas J; Manz, Markus G; Müller, Antonia M S (2020). Long-term follow-up of antibody titers against measles, mumps, and rubella in recipients of allogenic hematopoietic cell transplantations. Biology of Blood and Marrow Transplantation, 26(3):581-592.

Sommerstein, Rami; Hasse, Barbara; Widmer, Andreas F (2020). Invasive Mycobacterium chimaera infections and heater-cooler devices in cardiac surgery. Emerging Infectious Diseases, 26(3):632-633.

Kovari, Helen; Calmy, Alexandra; Doco-Lecompte, Thanh; Nkoulou, René; Marzel, Alex; Weber, Rainer; Kaufmann, Philipp A; Buechel, Ronny R; Ledergerber, Bruno; Tarr, Philip E; Swiss HIV Cohort Study (2020). Antiretroviral Drugs Associated with Subclinical Coronary Artery Disease in the Swiss HIV Cohort Study. Clinical Infectious Diseases, 70(5):884-889.

Dietrich, Léna G; Barceló, Catalina; Thorball, Christian W; Ryom, Lene; Burkhalter, Felix; Hasse, Barbara; Furrer, Hansjakob; Weisser, Maja; Steffen, Ana; Bernasconi, Enos; Cavassini, Matthias; de Seigneux, Sophie; Csajka, Chantal; Fellay, Jacques; Ledergerber, Bruno; Tarr, Philip E; Swiss HIV Cohort Study (2020). Contribution of genetic background and clinical D:A:D risk score to chronic kidney disease in Swiss HIV-positive persons with normal baseline estimated glomerular filtration rate. Clinical Infectious Diseases, 70(5):890-897.

Betz, Michael; Uçkay, Ilker; Schüpbach, Regula; Gröber, Tanja; Botter, Sander M; Burkhard, Jan; Holy, Dominique; Achermann, Yvonne; Farshad, Mazda (2020). Short postsurgical antibiotic therapy for spinal infections: protocol of prospective, randomized, unblinded, noninferiority trials (SASI trials). Trials, 21(1):144.

Rohner, Eliane; Bütikofer, Lukas; Schmidlin, Kurt; Sengayi, Mazvita; Maskew, Mhairi; Giddy, Janet; Taghavi, Katayoun; Moore, Richard D; Goedert, James J; Gill, M John; Silverberg, Michael J; D'Souza, Gypsyamber; Patel, Pragna; Castilho, Jessica L; Ross, Jeremy; Sohn, Annette; Bani-Sadr, Firouze; Taylor, Ninon; Paparizos, Vassilios; Bonnet, Fabrice; Verbon, Annelies; Vehreschild, Jörg Janne; Post, Frank A; Sabin, Caroline; Mocroft, Amanda; Dronda, Fernando; Obel, Niels; Grabar, Sophie; Spagnuolo, Vincenzo; Quiros-Roldan, Eugenia; Hasse, Barbara; et al (2020). Cervical cancer risk in women living with HIV across four continents: A multicohort study. International Journal of Cancer, 146(3):601-609.

Plate, A; Weichselbaumer, V; Schüpbach, R; Fucentese, S F; Berli, M; Hüllner, M; Achermann, Y (2020). Diagnostic accuracy of $^{99m}$Tc-antigranulocyte SPECT/CT in patients with osteomyelitis and orthopaedic device-related infections: A retrospective analysis. International Journal of Infectious Diseases, 91:79-86.

Hasse, Barbara; Hannan, Margaret M; Keller, Peter M; Maurer, Florian P; Sommerstein, Rami; Mertz, Dominik; et al; Bettex, Dominique; Schreiber, Peter W; Zweifel, Sandrine A; Sander, P; Schulthess, B (2020). International Society of Cardiovascular Infectious Diseases Guidelines for the Diagnosis, Treatment and Prevention of Disseminated Mycobacterium chimaera Infection Following Cardiac Surgery with Cardiopulmonary Bypass. Journal of Hospital Infection, 104(2):214-235.

Laut, K; Kirk, O; Rockstroh, J; Phillips, A; Ledergerber, B; Gatell, J; Gazzard, B; Horban, A; Karpov, I; Losso, M; d'Arminio Monforte, A; Pedersen, C; Ristola, M; Reiss, P; Scherrer, A U; de Wit, S; Aho, I; Rasmussen, L D; Svedhem, V; Wandeler, G; Pradier, C; Chkhartishvili, N; Matulionyte, R; Oprea, C; Kowalska, J D; Begovac, J; Miró, J M; Guaraldi, G; Paredes, R; Raben, D; et al (2020). The EuroSIDA study: 25 years of scientific achievements. HIV Medicine, 21(2):71-83.

Julian, Kathleen G; Crook, Tonya; Curley, Eugene; Appenheimer, A Ben; Paules, Catharine I; Hasse, Barbara; Diekema, Daniel J; Daley, Charles L; de Sanctis, Jorgelina; Hellinger, Walter C; Levin, Adrah; McSherry, George; Freer, Carol; Whitener, Cynthia J (2020). Long-term follow-up of post-cardiac surgery Mycobacterium chimaera infections: A 5-center case series. Journal of Infection, 80(2):197-203.

Wolfensberger, Aline (2020). Nichts geht mehr - wenn Antibiotika ihre Wirksamkeit verlieren. Praxis, 109(2):63.

Schreiber, Peter W; Müller, Nicolas (2020). Mycoplasma and Ureaplasma Infections in Transplantation: A Big Impact Despite the Lack of a Cell Wall. In: Morris, M; Kotton, Camille N; Wolfe, C. Emerging Transplant Infections : Clinical Challenges and Implications. Cham: Springer, online.

Barceló, Catalina; Guidi, Monia; Thorball, Christian W; Hammer, Christian; Chaouch, Aziz; Scherrer, Alexandra U; Hasse, Barbara; Cavassini, Matthias; Furrer, Hansjakob; Calmy, Alexandra; Haubitz, Sebastian; Bernasconi, Enos; Buclin, Thierry; Fellay, Jacques; Tarr, Philip E; Csajka, Chantal; Swiss HIV Cohort Study (2020). Impact of genetic and nongenetic factors on body mass index and waist-hip ratio change in HIV-infected individuals initiating antiretroviral therapy. Open Forum Infectious Diseases, 7(1):ofz464.

Métral, M; Darling, K E A; Locatelli, I; Nadin, I; Santos, G; Brugger, P; Kovari, H; Cusini, A; Gutbrod, K; Tarr, P E; Calmy, A; Lecompte, T D; Assal, F; Monsch, A; Kunze, U; Stoeckle, M; Schwind, M; Schmid, P; Pignatti, R; Di Benedetto, C; Du Pasquier, R; Cavassini, M; NAMACO study group; Swiss HIV Cohort Study (2020). The Neurocognitive Assessment in the Metabolic and Aging Cohort (NAMACO) study: baseline participant profile. HIV Medicine, 21(1):30-42.

Agius, Rudi; Brieghel, Christian; Andersen, Michael A; Pearson, Alexander T; Ledergerber, Bruno; Cozzi-Lepri, Alessandro; Louzoun, Yoram; Andersen, Christen L; Bergstedt, Jacob; von Stemann, Jakob H; Jørgensen, Mette; Tang, Man-Hung Eric; Fontes, Magnus; Bahlo, Jasmin; Herling, Carmen D; Hallek, Michael; Lundgren, Jens; MacPherson, Cameron Ross; Larsen, Jan; Niemann, Carsten U (2020). Machine learning can identify newly diagnosed patients with CLL at high risk of infection. Nature Communications, 11(1):363.

Salazar-Vizcaya, Luisa; Kusejko, Katharina; Schmidt, Axel J; Carrillo-Montoya, Germán; Nicca, Dunja; Wandeler, Gilles; Braun, Dominique L; Fehr, Jan; Darling, Katharine E A; Bernasconi, Enos; Schmid, Patrick; Günthard, Huldrych F; Kouyos, Roger D; Rauch, Andri (2020). Clusters of sexual behaviour in HIV-positive men who have sex with men reveal highly dissimilar time trends. Clinical Infectious Diseases, 70(3):416-424.

Roth, Jan A; Franzeck, Fabian C; Balakrishna, Suraj; Lautenschlager, Stephan; Thurnheer, Maria Christine; Trellu, Laurence Toutous; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Braun, Dominique; Kouyos, Roger D; Battegay, Manuel; Swiss HIV Cohort Study (2020). Repeated syphilis episodes in HIV-infected men who have sex with men: a multicenter prospective cohort study on risk factors and the potential role of syphilis immunity. Open Forum Infectious Diseases, 7(1):ofaa019.

Altwegg, Olivia; Weisskopf, Saskia; Mattmller, Marianne; Spieler, Patricia; Grandinetti, Tanja; Hilfiker, Anina; Carp, Peter Christiaan; Huttner, Angela; Calmy, Alexandra; Hasse, Barbara; Etter, Gisela; Tarr, Philip (2020). Akute Blasenentzündung – Behandlung ohne Antibiotika. Primary and Hospital Care, 20(01):23-28.

Schreiber, Peter W; Kusejko, Katharina; Bischoff-Ferrari, Heike A; Boggian, Katia; Bonani, Marco; van Delden, Christian; Enriquez, Natalia; Fehr, Thomas; Garzoni, Christian; Hirsch, Hans H; Hirzel, Cédric; Manuel, Oriol; Meylan, Pascal; Saleh, Lanja; Weisser, Maja; Mueller, Nicolas J; Swiss Transplant Cohort Study (2020). Vitamin D deficiency is common in kidney transplant recipients, but is not associated with infections after transplantation. Clinical Transplantation, 34(2):e13778.

Abela, Irene A; Scherrer, Alexandra U; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Perreau, Matthieu; Hirsch, Hans H; Furrer, Hansjakob; Calmy, Alexandra; Schmid, Patrick; Cavassini, Matthias; Bernasconi, Enos; Günthard, Huldrych F; Swiss HIV Cohort Study (2020). Emergence of drug resistance in the Swiss HIV Cohort Study under potent antiretroviral therapy is observed in socially disadvantaged patients. Clinical Infectious Diseases, 70(2):297-303.

Keller, Emanuela; Brandi, Giovanna; Winklhofer, Sebastian; Imbach, Lukas; Kirschenbaum, Daniel; Frontzek, Karl Joachim; Steiger, Peter; Dietler, Sabeth Aurelia; Haeberlin, Marcellina Isabelle; Willms, Jan Folkard; Porta, Francesca; Waeckerlin, Adrian; Abela, Irene Alma; Lutterotti, Andreas; Stippich, Christoph; Jelcic, Ilijas (2020). Central Nervous System Disorders in Severe SARS-CoV-2 Infection: detailed clinical work-up of eight cases. Research Square: Blenheim Chalcot Company.

Lüthi, Beda. Clinical spectrum of lethal infection after solid organ transplantation. 2020, University of Zurich, Faculty of Medicine.

Inderbitzin, Anne; Kok, Yik Lim; Jörimann, Lisa; Kelley, Audrey; Neumann, Kathrin; Heinzer, Daniel; Cathomen, Toni; Metzner, Karin J (2020). HIV-1 promoter is gradually silenced when integrated into BACH2 in Jurkat T-cells. PeerJ, 8:e10321.

Moehrlen, Ueli; Elrod, Julia; Ochsenbein-Kölble, Nicole; Berger, Christoph; Speck, Roberto F; Mazzone, Luca; Krähenmann, Franziska; Zimmermann, Roland; Meuli, Martin (2020). In utero Hepatitis B Immunization during Fetal Surgery for Spina Bifida. Fetal Diagnosis and Therapy, 47(4):328-332.

Meerwein, Milton. Increased Azithromycin Susceptibility of Multidrug-Resistant Gram-Negative Bacteria on RPMI-1640 Agar Assessed by Disk Diffusion Testing. 2020, University of Zurich, Faculty of Medicine.

Häffner, Nicola; Bär, Julian; Dengler Haunreiter, Vanina; Mairpady Shambat, Srikanth; Seidl, Kati; Crosby, Heidi A; Horswill, Alexander R; Zinkernagel, Annelies S (2020). Intracellular environment and agr system affect colony size heterogeneity of Staphylococcus aureus. Frontiers in Microbiology, 11:1415.

Neesgaard, Bastian; Mocroft, Amanda; Zangerle, Robert; Wit, Ferdinand; Lampe, Fiona; Günthard, Huldrych F; et al (2020). Virologic and immunologic outcomes of treatment with integrase inhibitors in a real-world setting: The RESPOND cohort consortium. PLoS ONE, 15(12):e0243625.

2019

Brunner, Isabelle; Schmedders, Karl; Wolfensberger, Aline; Schreiber, Peter W; Kuster, Stefan P (2019). The economic and public health impact of influenza vaccinations: contributions of Swiss pharmacies in the 2016/17 and 2017/18 influenza seasons and implications for vaccination policy. Swiss Medical Weekly, 2019(149):w20161.

Hernandez, Matthew M; Fahrny, Audrey; Jayaprakash, Anitha; Gers-Huber, Gustavo; Dillon-White, Marsha; Audigé, Annette; Mulder, Lubbertus C F; Sachidanandam, Ravi; Speck, Roberto F; Simon, Viviana (2019). Impact of suboptimal APOBEC3G neutralization on the emergence of HIV drug resistance in humanized mice. Journal of Virology, 94(5):0.

Andreoni, Federica; Toyofuku, Masanori; Menzi, Carmen; Kalawong, Ratchara; Mairpady Shambat, Srikanth; François, Patrice; Zinkernagel, Annelies S; Eberl, Leo (2019). Antibiotics Stimulate Formation of Vesicles in Staphylococcus aureus in both Phage-Dependent and -Independent Fashions and via Different Routes. Antimicrobial Agents and Chemotherapy, 63(2):e01439-18.

Malerba, Mariangela; Louis, Sabine; Cuvellier, Sylvain; Mairpady Shambat, Srikanth; Hua, Camille; Gomart, Camille; Fouet, Agnès; Ortonne, Nicolas; Decousser, Jean-Winoc; Zinkernagel, Annelies S; Mathieu, Jacques R R; Peyssonnaux, Carole (2019). Epidermal hepcidin is required for neutrophil response to bacterial infection. Journal of Clinical Investigation, 130(1):329-334.

Lenherr Ramos, Laura; Weber, Rainer; Sax, Hugo; Giovanoli, Pietro; Kuster, Stefan P (2019). A comprehensive unit-based safety program for the reduction of surgical site infections in plastic surgery and hand surgery. Infection Control and Hospital Epidemiology, 40(12):1367-1373.

Buzibye, Allan; Musaazi, Joseph; von Braun, Amrei; Nanzigu, Sarah; Sekaggya-Wiltshire, Christine; Kambugu, Andrew; Fehr, Jan; Lamorde, Mohammed; Gutteck, Ursula; Muller, Daniel; Sowinski, Stefanie; Reynolds, Steven J; Castelnuovo, Barbara (2019). Antiretroviral concentration measurements as an additional tool to manage virologic failure in resource limited settings: a case control study. AIDS Research and Therapy, 16(1):39.

Koval, Christine E; Farr, Maryjane; Krisl, Jill; Haidar, Ghady; Pereira, Marcus R; Shrestha, Nabin; Malinis, Maricar F; Mueller, Nicolas J; Hannan, Margaret M; Grossi, Paolo; Huprikar, Shirish (2019). Heart or lung transplant outcomes in HIV-infected recipients. Journal of Heart and Lung Transplantation, 38(12):1296-1305.

Breckwoldt, Jan; Knecht, Monika; Massée, Ralph; Flach, Barbara; Hofmann-Huber, Caroline; Kaap-Fröhlich, Sylvia; Witt, Claudia M; Aeberhard, Ruth; Sax, Hugo (2019). Operating room technician trainees teach medical students - an inter-professional peer teaching approach for infection prevention strategies in the operation room. Antimicrobial Resistance and Infection Control, 8(1):75.

Schwarz, Hila; Böni, Jürg; Kouyos, Roger D; Turk, Teja; Battegay, Edouard; Kohler, Malcolm; Müller, Rouven; Petry, Heidi; Sax, Hugo; Weber, Rainer; McGeer, Allison; Trkola, Alexandra; Kuster, Stefan P (2019). The TransFLUas influenza transmission study in acute healthcare - recruitment rates and protocol adherence in healthcare workers and inpatients. BMC Infectious Diseases, 19(1):446.

Wolfensberger, Aline; Kuster, Stefan P; Marchesi, Martina; Zbinden, Reinhard; Hombach, Michael (2019). The effect of varying multidrug-resistence (MDR) definitions on rates of MDR gram-negative rods. Antimicrobial Resistance and Infection Control, 8:193.

Clack, Lauren; Stühlinger, Manuel; Meier, Marie-Theres; Wolfensberger, Aline; Sax, Hugo (2019). User-centred participatory design of visual cues for isolation precautions. Antimicrobial Resistance and Infection Control, 8:179.

Troxler, Lukas J; Werren, Joel P; Schaffner, Thierry O; Mostacci, Nadezda; Vermathen, Peter; Vermathen, Martina; Wüthrich, Daniel; Simillion, Cedric; Brugger, Silvio D; Bruggmann, Rémy; Hathaway, Lucy J; Furrer, Julien; Hilty, Markus (2019). Carbon source regulates polysaccharide capsule biosynthesis in Streptococcus pneumoniae. Journal of Biological Chemistry, 294(46):17224-17238.

Ryom, Lene; Lundgren, Jens D; Law, Matthew; Kirk, Ole; El-Sadr, Wafaa; Bonnet, Fabrice; Weber, Rainer; Fontas, Eric; Monforte, Antonella d'Arminio; Phillips, Andrew; Reiss, Peter; de Wit, Stephane; Hatleberg, Camilla Ingrid; Sabin, Caroline; Mocroft, Amanda (2019). Serious clinical events in HIV-positive persons with chronic kidney disease. AIDS, 33(14):2173-2188.

Mody, Lona; Washer, Laraine L; Kaye, Keith S; Gibson, Kristen; Saint, Sanjay; Reyes, Katherine; Cassone, Marco; Mantey, Julia; Cao, Jie; Altamimi, Sarah; Perri, Mary; Sax, Hugo; Chopra, Vineet; Zervos, Marcus (2019). Multidrug-resistant organisms in hospitals: what Is on patient hands and in their rooms? Clinical Infectious Diseases, 69(11):1837-1844.

Tepekule, Burcu; Abel Zur Wiesch, Pia; Kouyos, Roger D; Bonhoeffer, Sebastian (2019). Quantifying the impact of treatment history on plasmid-mediated resistance evolution in human gut microbiota. Proceedings of the National Academy of Sciences of the United States of America, 116(46):23106-23116.

Harro, Janette M; Achermann, Yvonne; Freiberg, Jeffrey A; Allison, Devon L; Brao, Kristen J; Marinos, Dimitrius P; Sanjari, Salar; Leid, Jeff G; Shirtliff, Mark E (2019). Clearance of Staphylococcus aureus from In Vivo Models of Chronic Infection by Immunization Requires Both Planktonic and Biofilm Antigens. Infection and Immunity, 88(1):0.

Wolfensberger, A; Jakob, W; Faes Hesse, M; Kuster, S P; Meier, A H; Schreiber, P W; Clack, L; Sax, H (2019). Development and validation of a semi-automated surveillance system-lowering the fruit for non-ventilator-associated hospital-acquired pneumonia (nvHAP) prevention. Clinical Microbiology and Infection, 25(11):1428.e7-1428.e13.

Lodi, Sara; Günthard, Huldrych F; Gill, John; Phillips, Andrew N; Dunn, David; Vu, Quang; Siemieniuk, Reed; Garcia, Federico; Logan, Roger; Jose, Sophie; Bucher, Heiner C; Scherrer, Alexandra U; et al (2019). Effectiveness of Transmitted Drug Resistance Testing Before Initiation of Antiretroviral Therapy in HIV-Positive Individuals. Journal of Acquired Immune Deficiency Syndromes, 82(3):314-320.

Kuenzli, Esther; Jaeger, Veronika K; DeCrom, Susan; Sydow, Véronique; Muigg, Veronika; Frei, Reno; Egli, Adrian; Fehr, Jan; Hatz, Christoph (2019). Impact of alcohol-based hand-gel sanitizer and hand hygiene advice on travellers' diarrhoea and colonization with extended-spectrum beta-lactamase-producing Enterobacteriaceae: A randomised, controlled trial. Travel Medicine and Infectious Disease, 32:101475.

Bertels, Frederic; Leemann, Christine; Metzner, Karin J; Regoes, Roland (2019). Parallel evolution of HIV-1 in a long-term experiment. Molecular Biology and Evolution, 36(11):2400-2414.

Schmid, Adrian; Wolfensberger, Aline; Nemeth, Johannes; Schreiber, Peter W; Sax, Hugo; Kuster, Stefan P (2019). Monotherapy versus combination therapy for multidrug-resistant Gram-negative infections: Systematic Review and Meta-Analysis. Scientific Reports, 9:15290.

Niederhauser, Andrea; Züllig, Stephanie; Marschall, Jonas; Schweiger, Alexander; John, Gregor; Kuster, Stefan P; Schwappach, David L B (2019). Change in staff perspectives on indwelling urinary catheter use after implementation of an intervention bundle in seven Swiss acute care hospitals: results of a before/after survey study. BMJ Open, 9(10):e028740.

Braun, Dominique L; Turk, Teja; Tschumi, Fabian; Grube, Christina; Hampel, Benjamin; Depmeier, Carsten; Schreiber, Peter W; Brugger, Silvio D; Greiner, Michael; Steffens, Daniela; de Torrenté-Bayard, Cornelia; Courlet, Perrine; Neumann, Kathrin; Kuster, Herbert; Flepp, Markus; Bertisch, Barbara; Decosterd, Laurent; Böni, Jürg; Metzner, Karin J; Kouyos, Roger D; Günthard, Huldrych F (2019). Non-inferiority of simplified dolutegravir monotherapy compared to continued combination antiretroviral therapy that was initiated during primary HIV infection: a randomized, controlled, multi-site, open-label, non-inferiority trial. Clinical Infectious Diseases, 69(9):1489-1497.

Surial, Bernard; Cavassini, Matthias; Calmy, Alexandra; Fehr, Jan; Stöckle, Marcel; Bernasconi, Enos; Roth, Bianca; Fux, Christoph A; Kovari, Helen; Furrer, Hansjakob; Rauch, Andri; Wandeler, Gilles; Swiss HIV Cohort Study (2019). Rates and predictors of switching to tenofovir alafenamide-containing ART in a nationwide cohort. BMC Infectious Diseases, 19:834.

Sommerstein, Rami; Atkinson, Andrew; Kuster, Stefan P; Thurneysen, Maurus; Genoni, Michele; Troillet, Nicolas; Marschall, Jonas; Widmer, Andreas F (2019). Antimicrobial prophylaxis and the prevention of surgical site infection in cardiac surgery: an analysis of 21 007 patients in Switzerland. European Journal of Cardio-Thoracic Surgery, 56(4):800-806.

Büdel, Thomas; Kuenzli, Esther; Clément, Mathieu; Bernasconi, Odette J; Fehr, Jan; Mohammed, Ali Haji; Hassan, Nadir Khatib; Zinsstag, Jakob; Hatz, Christoph; Endimiani, Andrea (2019). Polyclonal gut colonization with extended-spectrum cephalosporin- and/or colistin-resistant Enterobacteriaceae: a normal status for hotel employees on the island of Zanzibar, Tanzania. Journal of Antimicrobial Chemotherapy, 74(10):2880-2890.

Günthard, Huldrych F; Kouyos, Roger (2019). Can Directionality of HIV Transmission be Predicted by Next-Generation Sequencing Data? Journal of Infectious Diseases, 220(9):1393-1395.

Christe, Andreas; Walti, Laura; Charimo, Jaled; Rauch, Andri; Furrer, Hansjakob; Meyer, Andreas; Huynh-Do, Uyen; Heverhagen, Johannes T; Mueller, Nicolas J; Cavassini, Matthias; Mombelli, Matteo; van Delden, Christian; Frauenfelder, Thomas; Montet, Xavier; Beigelman-Aubry, Catherine; Arampatzis, Spyridon; Ebner, Lukas (2019). Imaging patterns of Pneumocystis jirovecii pneumonia in HIV-positive and renal transplant patients - a multicentre study. Swiss Medical Weekly, 149:w20130.

Ruffieux, Yann; Chammartin, Frédérique; Feller, Anita; Schmidlin, Kurt; Rohrmann, Sabine; Staehelin, Katharina; Bouchardy, Christine; Bucher, Heiner C; Hasse, Barbara; Cavassini, Matthias; Calmy, Alexandra; Wandeler, Gilles; Scherrer, Alexandra; Bohlius, Julia; Egger, Matthias (2019). Non-AIDS defining malignancies in the combination ART era: immunological and socio-behavioral risk factors. F1000Research, 8:1400.

Künzler-Heule, Patrizia; Engberg, Sandra; Battegay, Manuel; Schmidt, Axel J; Fierz, Katharina; Nguyen, Huyen; Kocher, Agnes; Nöstlinger, Christiana; Hampel, Benjamin; Stöckle, Marcel; Béguelin, Charles; Delaloye, Julie; Schmid, Patrick; Flepp, Markus; Rougement, Mathieu; Braun, Dominique Laurent; Fehr, Jan; Nicca, Dunja; Swiss HIV Cohort Study (2019). Screening HIV-positive men who have sex with men for hepatitis C re-infection risk: is a single question on condom-use enough? A sensitivity analysis. BMC Infectious Diseases, 19(1):821.

Alessandrini, M; Krause, K-H; Speck, R F; Pepper, M S (2019). Transplantation of gene-modified haematopoietic stem cells: Application and clinical considerations. South African Medical Journal, 109(8b):64-69.

Liechti, Thomas; Kadelka, Claus; Braun, Dominique L; Kuster, Herbert; Böni, Jürg; Robbiani, Melissa; Günthard, Huldrych F; Trkola, Alexandra (2019). Widespread B cell perturbations in HIV-1 infection afflict naive and marginal zone B cells. Journal of Experimental Medicine, 216(9):2071-2090.

Wójtowicz, Agnieszka; Bibert, Stéphanie; Taffé, Patrick; Bernasconi, Enos; Furrer, Hansjakob; Günthard, Huldrych F; Hoffmann, Matthias; Osthoff, Michael; Cavassini, Matthias; Bochud, Pierre-Yves; Swiss HIV Cohort Study (2019). IL-4 polymorphism influences susceptibility to Pneumocystis jirovecii pneumonia in HIV-positive patients. AIDS, 33(11):1719-1727.

Barcelo, Catalina; Aouri, Manel; Courlet, Perrine; Guidi, Monia; Braun, Dominique L; Günthard, Huldrych F; Piso, Rein J; Cavassini, Matthias; Buclin, Thierry; Decosterd, Laurent A; Csajka, Chantal; Swiss HIV Cohort Study (2019). Population pharmacokinetics of dolutegravir: influence of drug-drug interactions in a real-life setting. Journal of Antimicrobial Chemotherapy, 74(9):2690-2697.

Wensing, Annemarie M; Calvez, Vincent; Ceccherini-Silberstein, Francesca; Charpentier, Charlotte; Günthard, Huldrych F; Paredes, Roger; Shafer, Robert W; Richman, Douglas D (2019). 2019 update of the drug resistance mutations in HIV-1. Topics in Antiviral Medicine, 27(3):111-121.

Dulek, Daniel E; Mueller, Nicolas J (2019). Pneumonia in solid organ transplantation: Guidelines from the American Society of Transplantation Infectious Diseases Community of Practice. Clinical Transplantation, 33(9):e13545.

Schreiber, Peter W; Kufner, Verena; Hübel, Kerstin; Schmutz, Stefan; Zagordi, Osvaldo; Kaur, Amandeep; Bayard, Cornelia; Greiner, Michael; Zbinden, Andrea; Capaul, Riccarda; Böni, Jürg; Hirsch, Hans H; Mueller, Thomas F; Mueller, Nicolas J; Trkola, Alexandra; Huber, Michael (2019). Metagenomic virome sequencing in living donor-recipient kidney transplant pairs revealed JC Polyomavirus transmission. Clinical Infectious Diseases, 69(6):987-994.

Kufner, Verena; Plate, Andreas; Schmutz, Stefan; Braun, Dominique L; Günthard, Huldrych F; Capaul, Riccarda; Zbinden, Andrea; Mueller, Nicolas J; Trkola, Alexandra; Huber, Michael (2019). Two Years of Viral Metagenomics in a Tertiary Diagnostics Unit: Evaluation of the First 105 Cases. Genes, 10(9):pii: E661.

Pop, Roxana; Estermann, Lea; Schulthess, Bettina; Eberhard, Nadia (2019). Deep infection with Mycobacterium marinum : successful treatment of a frequently misdiagnosed disease. BMJ Case Reports, 12(8):e229663.

Ruffieux, Yann; Lemsalu, Liis; Aebi-Popp, Karoline; Calmy, Alexandra; Cavassini, Matthias; Fux, Christoph A; Günthard, Huldrych F; Marzolini, Catia; Scherrer, Alexandra; Vernazza, Pietro; Keiser, Olivia; Egger, Matthias; Swiss HIV Cohort Study; Swiss National Cohort Study Group (2019). Mortality from suicide among people living with HIV and the general Swiss population: 1988-2017. Journal of the International Aids Society, 22(8):e25339.

Nguyen, Huyen; Thorball, Christian W; Fellay, Jacques; Böni, Jürg; Yerly, Sabine; Perreau, Matthieu; Klimkait, Thomas; Kusejko, Katharina; Bachmann, Nadine; Chaudron, Sandra E; Paioni, Paolo; Thurnheer, Maria C; Battegay, Manuel; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Günthard, Huldrych F; Kouyos, Roger; Swiss HIV Cohort Study (2019). HIV Transmission Chains Exhibit Greater HLA-B Homogeneity Than Randomly Expected. Journal of Acquired Immune Deficiency Syndromes, 81(5):508-515.

Bogdanovic, Jasmina; Petralito, Serge; Passerini, Simone; Sax, Hugo; Manser, Tanja; Clack, Lauren (2019). Exploring healthcare providers' mental models of the infection prevention "patient zone" - a concept mapping study. Antimicrobial Resistance and Infection Control, 8:138.

Hatleberg, Camilla Ingrid; Ryom, Lene; Kamara, David; De Wit, Stephane; Law, Matthew; Phillips, Andrew; Reiss, Peter; D'Arminio Monforte, Antonella; Mocroft, Amanda; Pradier, Christian; Kirk, Ole; Kovari, Helen; Bonnet, Fabrice; El-Sadr, Wafaa; Lundgren, Jens D; Sabin, Caroline (2019). Predictors of Ischemic and Hemorrhagic Strokes Among People Living With HIV: The D:A:D International Prospective Multicohort Study. EClinicalMedicine, 13:91-100.

Anagnostopoulos, Alexia; Ledergerber, Bruno; Kuster, Stefan P; Scherrer, Alexandra U; Näf, Bettina; Greiner, Michael A; Rancic, Zoran; Kobe, Adrian; Bettex, Dominique; Hasse, Barbara (2019). Inadequate perioperative prophylaxis and postsurgical complications after graft implantation are important risk factors for subsequent vascular graft infections – prospective results from the VASGRA Cohort Study. Clinical Infectious Diseases, 69(4):621-630.

Schreiber, Peter W; Dunic, Mesida; Wolfensberger, Aline; Clack, Lauren; Falk, Christian; Sax, Hugo; Kuster, Stefan P (2019). Seasonal differences in central line-associated bloodstream infection incidence rates in a Central European setting: Results from prospective surveillance. American Journal of Infection Control, 47(8):1011-1013.

Wandeler, Gilles; Mauron, Etienne; Atkinson, Andrew; Dufour, Jean-François; Kraus, David; Reiss, Peter; Peters, Lars; Dabis, François; Fehr, Jan; Bernasconi, Enos; van der Valk, Marc; Smit, Colette; Gjærde, Lars K; Rockstroh, Jürgen; Neau, Didier; Bonnet, Fabrice; Rauch, Andri; Swiss HIV Cohort Study; Athena Observational Cohort Study; EuroSIDA; ANRS CO3 Aquitaine Cohort (2019). Incidence of hepatocellular carcinoma in HIV/HBV-coinfected patients on tenofovir therapy: Relevance for screening strategies. Journal of Hepatology, 71(2):274-280.

Calcagno, Andrea; Cusato, Jessica; Sekaggya-Wiltshire, Christine; von Braun, Amrei; Motta, Ilaria; Turyasingura, Grace; Castelnuovo, Barbara; Fehr, Jan; Di Perri, Giovanni; Lamorde, Mohammed (2019). The Influence of Pharmacogenetic Variants in HIV/Tuberculosis Coinfected Patients in Uganda in the SOUTH Study. Clinical Pharmacology and Therapeutics, 106(2):450-457.

Schoepf, Isabella C; Buechel, Ronny R; Kovari, Helen; Hammoud, Dima A; Tarr, Philip E (2019). Subclinical Atherosclerosis Imaging in People Living with HIV. Journal of clinical medicine, 8:E1125.

Schlaepfer, Erika; Fahrny, Audrey; Gruenbach, Maarja; Kuster, Stefan P; Simon, Viviana; Schreiber, Gideon; Speck, Roberto F (2019). Reply to Hasenkrug et al., "Different Biological Activities of Specific Interferon Alpha Subtypes". mSphere, 4(4):e00275.

Bachmann, Nadine; von Siebenthal, Chantal; Vongrad, Valentina; Turk, Teja; Neumann, Kathrin; Beerenwinkel, Niko; Bogojeska, Jasmina; Fellay, Jaques; Roth, Volker; Kok, Yik Lim; Thorball, Christian W; Borghesi, Alessandro; Parbhoo, Sonali; Wieser, Mario; Böni, Jürg; Perreau, Matthieu; Klimkait, Thomas; Yerly, Sabine; Battegay, Manuel; Rauch, Andri; Hoffmann, Matthias; Bernasconi, Enos; Cavassini, Matthias; Kouyos, Roger D; Günthard, Huldrych F; Metzner, Karin J; Swiss HIV Cohort Study (2019). Determinants of HIV-1 reservoir size and long-term dynamics during suppressive ART. Nature Communications, 10(1):3193.

Hofmann, Yal; Berger, Hanna; Wingeier, Bernhard; Huber, Benedikt; Boggian, Katja; Hug-Batschelet, Henriette; Rosamilia, Claudia; Mosimann, Philippe; Bielicki, Julia; Horvath, Lukas; Hotz, Michel-Andr; Dettwiler, Andreas; Avoledo, Pierino; Rowedder, Axel; Hasse, Barbara; Posfay-Barbe, Klara; Senn, Laurence; Tarr, Philip (2019). Behandlung der Streptokokken-Angina. Swiss Medical Forum, 19(2930):481-488.

Sonzogni, Olmo; Millard, Anne-Laure; Taveira, Aline; Schneider, Mårten K J; Duo, Li; Speck, Roberto F; Wulf, Gerburg M; Mueller, Nicolas J (2019). Efficient Human Cytomegalovirus Replication in Primary Endothelial Cells Is SOCS3 Dependent. Intervirology, 62(2):80-89.

Olearo, Flaminia; Nguyen, Huyen; Bonnet, Fabrice; Yerly, Sabine; Wandeler, Gilles; Stoeckle, Marcel; Cavassini, Matthias; Scherrer, Alexandra; Costagiola, Dominique; Schmid, Patrick; Günthard, Huldrych F; Bernasconi, Enos; Boeni, Jürg; D'arminio Monforte, Antonella; Zazzi, Maurizio; Rossetti, Barbara; Neau, Didier; Bellecave, Pantxika; Rijnders, Bart; Reiss, Peter; Wit, Ferdinand; Kouyos, Roger; Calmy, Alexandra (2019). Impact of the M184V/I Mutation on the Efficacy of Abacavir/Lamivudine/Dolutegravir Therapy in HIV Treatment-Experienced Patients. Open Forum Infectious Diseases, 6(10):ofz330.

Tschumi, Fabian; Schmutz, Stefan; Kufner, Verena; Heider, Maike; Pigny, Fiona; Schreiner, Bettina; Capaul, Riccarda; Achermann, Yvonne; Huber, Michael (2019). Meningitis and epididymitis caused by Toscana virus infection imported to Switzerland diagnosed by metagenomic sequencing: a case report. BMC Infectious Diseases, 19(1):591.

Santos, Galia M A; Locatelli, Isabella; Métral, Mélanie; Calmy, Alexandra; Lecompte, Thanh Doco; Nadin, Isaure; Hauser, Christoph; Cusini, Alexia; Hasse, Barbara; Kovari, Helen; Tarr, Philip; Stoeckle, Marcel; Fux, Christoph; Di Benedetto, Caroline; Schmid, Patrick; Darling, Katharine E A; Du Pasquier, Renaud; Cavassini, Matthias; Neurocognitive Assessment in the Metabolic and Aging Cohort (NAM (2019). Cross-Sectional and Cumulative Longitudinal Central Nervous System Penetration Effectiveness Scores Are Not Associated With Neurocognitive Impairment in a Well Treated Aging Human Immunodeficiency Virus-Positive Population in Switzerland. Open Forum Infectious Diseases, 6(7):ofz277.

Balaban, Nathalie Q; Helaine, Sophie; Lewis, Kim; Ackermann, Martin; Aldridge, Bree; Andersson, Dan I; Brynildsen, Mark P; Bumann, Dirk; Camilli, Andrew; Collins, James J; Dehio, Christoph; Fortune, Sarah; Ghigo, Jean-Marc; Hardt, Wolf-Dietrich; Harms, Alexander; Heinemann, Matthias; Hung, Deborah T; Jenal, Urs; Levin, Bruce R; Michiels, Jan; Storz, Gisela; Tan, Man-Wah; Tenson, Tanel; Van Melderen, Laurence; Zinkernagel, Annelies (2019). Definitions and guidelines for research on antibiotic persistence. Nature Reviews. Microbiology, 17(7):441-448.

Hachfeld, A; Darling, K; Calmy, A; Ledergerber, B; Weber, R; Battegay, M; Wissel, K; Di Benedetto, C; Fux, C A; Tarr, P E; Kouyos, R; Ruggia, L S; Furrer, H J; Wandeler, G; Swiss HIV Cohort Study (2019). Why do sub-Saharan Africans present late for HIV care in Switzerland? HIV Medicine, 20(6):418-423.

Kusejko, Katharina; Bachmann, Nadine; Chaudron, Sandra E; Nguyen, Huyen; Braun, Dominique L; Hampel, Benjamin; Battegay, Manuel; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Hoffmann, Matthias; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Perreau, Matthieu; Rauch, Andri; Günthard, Huldrych F; Kouyos, Roger D; Swiss HIV Cohort Study (2019). A Systematic Phylogenetic Approach to Study the Interaction of HIV-1 With Coinfections, Noncommunicable Diseases, and Opportunistic Diseases. Journal of Infectious Diseases, 220(2):244-253.

Brugger, Silvio D; Kraemer, Julia G; Qi, Weihong; Bomar, Lindsey; Oppliger, Anne; Hilty, Markus (2019). Age-Dependent Dissimilarity of the Nasopharyngeal and Middle Ear Microbiota in Children With Acute Otitis Media. Frontiers in Genetics, 10:555.

Carlisle, Louisa A; Turk, Teja; Kusejko, Katharina; Metzner, Karin J; Leemann, Christine; Schenkel, Corinne D; Bachmann, Nadine; Posada, Susana; Beerenwinkel, Niko; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Perreau, Matthieu; Braun, Dominique L; Rauch, Andri; Calmy, Alexandra; Cavassini, Matthias; Battegay, Manuel; Vernazza, Pietro; Bernasconi, Enos; Günthard, Huldrych F; Kouyos, Roger D; Swiss HIV Cohort Study (2019). Viral Diversity Based on Next-Generation Sequencing of HIV-1 Provides Precise Estimates of Infection Recency and Time Since Infection. Journal of Infectious Diseases, 220(2):254-265.

Rodger, Alison J; Cambiano, Valentina; Bruun, Tina; Vernazza, Pietro; Collins, Simon; Degen, Olaf; Corbelli, Giulio Maria; Estrada, Vicente; Geretti, Anna Maria; Beloukas, Apostolos; Raben, Dorthe; Coll, Pep; Antinori, Andrea; Nwokolo, Nneka; Rieger, Armin; Prins, Jan M; Blaxhult, Anders; Weber, Rainer; Van Eeden, Arne; Brockmeyer, Norbert H; Clarke, Amanda; Del Romero Guerrero, Jorge; Raffi, Francois; Bogner, Johannes R; Wandeler, Gilles; Gerstoft, Jan; Gutiérrez, Felix; Brinkman, Kees; Kitchen, Maria; Ostergaard, Lars; et al (2019). Risk of HIV transmission through condomless sex in serodifferent gay couples with the HIV-positive partner taking suppressive antiretroviral therapy (PARTNER): final results of a multicentre, prospective, observational study. The Lancet, 393(10189):2428-2438.

Chrdle, Aleš; Trnka, Tomáš; Musil, David; Fucentese, Sandro F; Bode, Peter; Keller, Peter M; Achermann, Yvonne (2019). periprosthetic joint infections diagnosed with growth in cultures. Journal of Clinical Microbiology, 57(8):e00339-19.

Frey, Pascal M; Marti, Grischa R; Droz, Sara; de Roche von Arx, Mirjam; Suter-Riniker, Franziska; Aujesky, Drahomir; Brugger, Silvio D (2019). Bacterial colonization of handheld devices in a tertiary care setting: a hygiene intervention study. Antimicrobial Resistance and Infection Control, 8:97.

Salazar-Vizcaya, Luisa; Kouyos, Roger D; Metzner, Karin J; Caraballo Cortes, Kamila; Böni, Jürg; Shah, Cyril; Fehr, Jan; Braun, Dominique L; Bernasconi, Enos; Mbunkah, Herbert A; Hoffmann, Matthias; Labhardt, Niklaus; Cavassini, Matthias; Rougemont, Mathieu; Günthard, Huldrych F; Keiser, Olivia; Rauch, Andri; Swiss HIV Cohort Study (2019). Changing Trends in International Versus Domestic HCV Transmission in HIV-Positive Men Who Have Sex With Men: A Perspective for the Direct-Acting Antiviral Scale-Up Era. Journal of Infectious Diseases, 220(1):91-99.

Mueller, Nicolas J; Fishman, Jay A (2019). The Epidemiology of Infection in Solid Organ Transplant Recipients: A Practical Timeline. In: Manuel, Oriol; Ison, Michael G. Infectious Diseases in Solid-Organ Transplant Recipients. Cham: Springer, 3-11.

Husmann, Lars; Huellner, Martin W; Ledergerber, Bruno; Anagnostopoulos, Alexia; Stolzmann, Paul; Sah, Bert-Ram; Burger, Irene A; Rancic, Zoran; Hasse, Barbara; VASGRA Cohort (2019). Comparing diagnostic accuracy of F-FDG-PET/CT, contrast enhanced CT and combined imaging in patients with suspected vascular graft infections. European Journal of Nuclear Medicine and Molecular Imaging, 46(6):1359-1368.

Keller, Nadia; Woytschak, Janine; Martin Heeb, Lukas Erwin; Marques Maggio, Ewerton; Mairpady Shambat, Srikanth; Snäll, Johanna; Hyldegaard, Ole; Boyman, Onur; Norrby-Teglund, Anna; Zinkernagel, Annelies Sophie (2019). Group A streptococcal DNase Sda1 impairs plasmacytoid dendritic cell's type I interferon response. Journal of Investigative Dermatology, 139(6):1284-1293.

Hauser, Anthony; Kusejko, Katharina; Johnson, Leigh F; Wandeler, Gilles; Riou, Julien; Goldstein, Fardo; Egger, Matthias; Kouyos, Roger D (2019). Bridging the gap between HIV epidemiology and antiretroviral resistance evolution: Modelling the spread of resistance in South Africa. PLoS Computational Biology, 15(6):e1007083.

Tschumi, Fabian; Brugger, Silvio D; Braun, Dominique L (2019). CME-Antworten: «Dyslipidämie und kardiovaskuläres Risiko bei HIV-infizierten Patienten», Praxis Nr. 7. Praxis, 108(8):566.

Sommerstein, Rami; Marschall, Jonas; Kuster, Stefan P; Troillet, Nicolas; Carrel, Thierry; Eckstein, Friedrich S; Widmer, Andreas F (2019). Cardiovascular daytime varying effect in cardiac surgery on surgical site infections and 1-year mortality: A prospective cohort study with 22,305 patients. Infection Control and Hospital Epidemiology, 40(6):727-728.

Clack, Lauren; Willi, Ursina; Berenholtz, Sean; Aiken, Alexander M; Allegranzi, Benedetta; Sax, Hugo (2019). Implementation of a surgical unit-based safety programme in African hospitals: a multicentre qualitative study. Antimicrobial Resistance and Infection Control, 8:91.

Sekaggya-Wiltshire, Christine; Chirehwa, Maxwell; Musaazi, Joseph; von Braun, Amrei; Buzibye, Allan; Muller, Daniel; Gutteck, Ursula; Motta, Ilaria; Calcagno, Andrea; Fehr, Jan S; Kambugu, Andrew; Castelnuovo, Barbara; Lamorde, Mohammed; Denti, Paolo (2019). Low Antituberculosis Drug Concentrations in HIV-Tuberculosis-Coinfected Adults with Low Body Weight: Is It Time To Update Dosing Guidelines? Antimicrobial Agents and Chemotherapy, 63(6):online.

Wolfensberger, Aline; Anagnostopoulos, Alexia; Clack, Lauren; Meier, Marie-Theres; Kuster, Stefan P; Sax, Hugo (2019). Effectiveness of an edutainment video teaching standard precautions - a randomized controlled evaluation study. Antimicrobial Resistance and Infection Control, 8:82.

Zollinger, Marc; Houchens, Nathan; Chopra, Vineet; Clack, Lauren; Schreiber, Peter Werner; Kuhn, Latoya; Snyder, Ashley; Saint, Sanjay; Petrilli, Christopher M; Sax, Hugo (2019). Understanding patient preference for physician attire in ambulatory clinics: a cross-sectional observational study. BMJ Open, 9(5):e026009.

Euler, Zelda; Van Den Kerkhof, Tom L; Kouyos, Roger D; Tully, Damien C; Allen, Todd M; Trkola, Alexandra; Sanders, Rogier W; Schuitemaker, Hanneke; Van Gils, Marit J (2019). Lower Broadly Neutralizing Antibody Responses in Female Versus Male HIV-1 Infected Injecting Drug Users. Viruses, 11(4):E384.

Amele, S; Peters, L; Sluzhynska, M; Yakovlev, A; Scherrer, A; Domingo, P; Gerstoft, J; Viard, J P; Gisinger, M; Flisiak, R; Bhaghani, S; Ristola, M; Leen, C; Jablonowska, E; Wandeler, G; Stellbrink, H; Falconer, K; D'Arminio Monforte, A; Horban, A; Rockstroh, J K; Lundgren, J D; Mocroft, A; EuroSIDA study group (2019). Establishing a hepatitis C continuum of care among HIV/hepatitis C virus-coinfected individuals in EuroSIDA. HIV Medicine, 20(4):264-273.

Young, Jim; Scherrer, Alexandra U; Calmy, Alexandra; Tarr, Philip E; Bernasconi, Enos; Cavassini, Matthias; Hachfeld, Anna; Vernazza, Pietro; Günthard, Huldrych F; Bucher, Heiner C; Swiss HIV Cohort Study (2019). The comparative effectiveness of NRTI-sparing dual regimens in emulated trials using observational data from the Swiss HIV Cohort Study. Antiviral Therapy, 24(5):343-353.

Plate, A; Anagnostopoulos, A; Glanzmann, J; Stadler, L; Weigelt, L; Sutter, R; Kästli, M; Zinkernagel, A S; Zingg, P O; Achermann, Y (2019). Synovial C-reactive protein features high negative predictive value but is not useful as a single diagnostic parameter in suspected periprosthetic joint infection (PJI). Journal of Infection, 78(6):439-444.

Tarnutzer, Andrea; Andreoni, Federica; Keller, Nadia; Zürcher, Claudia; Norrby-Teglund, Anna; Schuepbach, Reto A; Zinkernagel, Annelies S (2019). Human polyspecific immunoglobulin attenuates group A streptococcal virulence factor activity and reduces disease severity in a murine necrotizing fasciitis model. Clinical Microbiology and Infection, 25(4):512.e7-512.e13.

Baumann, Anna; Musaazi, Joseph; Kambugu, Andrew; Kälin, Marisa; Weissberg, Dana; Ssemwanga, Deogratius; Fehr, Jan; Castelnuovo, Barbara; Sekaggya-Wiltshire, Christine; von Braun, Amrei (2019). Virological outcome of patients with HIV drug resistance attending an urban out-patient clinic in Uganda: a need for structured adherence counselling and third line treatment options. Journal of Acquired Immune Deficiency Syndromes, 80(4):481-487.

Dengler Haunreiter, Vanina; Boumasmoud, Mathilde; Häffner, Nicola; Wipfli, Dennis; Leimer, Nadja; Rachmühl, Carole; Kühnert, Denise; Achermann, Yvonne; Zbinden, Reinhard; Benussi, Stefano; Vulin, Clement; Zinkernagel, Annelies S (2019). In-host evolution of Staphylococcus epidermidis in a pacemaker-associated endocarditis resulting in increased antibiotic tolerance. Nature Communications, 10(1):1149.

Böni, Christian; Al-Sheikh, Mayss; Hasse, Barbara; Eberhard, Roman; Kohler, Philipp; Hasler, Pascal W; Erb, Stefan; Hoffmann, Matthias; Barthelmes, Daniel; Zweifel, Sandrine A (2019). Multimodal imaging of choroidal lesions in disseminated mycobacterium chimaera infection after cardiothoracic surgery. Retina, 39(3):452-464.

Rousset, Francis; Salmon, Patrick; Bredl, Simon; Cherpin, Ophélie; Coelho, Marta; Myburgh, Renier; Alessandrini, Marco; Perny, Michael; Roccio, Marta; Speck, Roberto F; Senn, Pascal; Krause, Karl Heinz (2019). Optimizing Synthetic miRNA Minigene Architecture for Efficient miRNA Hairpin Concatenation and Multi-target Gene Knockdown. Molecular Therapy - Nucleic Acids, 14:351-363.

Gaisl, Thomas; Albrecht, Katja; Schreiber, Peter W; Oberkofler, Christian E; Eberhard, Nadia (2019). Ein pyogener Leberabszess. Swiss Medical Forum, 19((0910)):168-170.

Mürner, Céline M; Stenner-Liewen, Frank; Seifert, Burkhardt; Mueller, Nicolas J; Schmidt, Adrian; Renner, Christoph; Schanz, Urs; Knuth, Alexander; Manz, Markus G; Scharl, Michael; Gerber, Bernhard; Samaras, Panagiotis (2019). Efficacy of selective digestive decontamination in patients with multiple myeloma undergoing high-dose chemotherapy and autologous stem cell transplantation. Leukemia & Lymphoma, 60(3):685-695.

Leon-Reyes, Selene; Schäfer, Juliane; Früh, Mathias; Schwenkglenks, Matthias; Reich, Oliver; Schmidlin, Kurt; Staehelin, Cornelia; Battegay, Manuel; Cavassini, Matthias; Hasse, Barbara; Bernasconi, Enos; Calmy, Alexandra; Hoffmann, Matthias; Schoeni-Affolter, Franziska; Zhao, Hongwei; Bucher, Heiner C (2019). Cost estimates for HIV care and patient characteristics for health resource utilisation from linkage of claims data with the Swiss HIV Cohort Study. Clinical Infectious Diseases, 68(5):827-833.

Schlaepfer, Erika; Fahrny, Audrey; Gruenbach, Maarja; Kuster, Stefan P; Simon, Viviana; Schreiber, Gideon; Speck, Roberto F (2019). Dose-Dependent Differences in HIV Inhibition by Different Interferon Alpha Subtypes While Having Overall Similar Biologic Effects. mSphere, 4(1):e00637-18.

Shepherd, Leah; Ryom, Lene; Law, Matthew; Petoumenos, Kathy; Hatleberg, Camilla Ingrid; d'Arminio Monforte, Antonella; Sabin, Caroline; Bower, Mark; Bonnet, Fabrice; Reiss, Peter; de Wit, Stephane; Pradier, Christian; Weber, Rainer; El-Sadr, Wafaa; Lundgren, Jens; Mocroft, Amanda (2019). Cessation of Cigarette Smoking and the Impact on Cancer Incidence in HIV-positive Persons: The D:A:D Study. Clinical Infectious Diseases, 68(4):650-657.

Scudeller, L; Rodríguez-Baño, J; Zinkernagel, A; Tacconelli, Evelina; Akova, M; Friedrich, A W; Sanguinetti, M; Paul, M; Poljak, M (2019). ESCMID white paper: a guide on ESCMID guidance documents. Clinical Microbiology and Infection, 25(2):155-162.

Saigi-Morgui, Núria; Quteineh, Lina; Bochud, Pierre-Yves; Crettol, Severine; Kutalik, Zoltán; Mueller, Nicolas J; Binet, Isabelle; Van Delden, Christian; Steiger, Jürg; Mohacsi, Paul; Dufour, Jean-francois; Soccal, Paola M; Pascual, Manuel; Eap, Chin B (2019). Genetic and clinic predictors of new onset diabetes mellitus after transplantation. Pharmacogenomics Journal, 19(1):53-64.

Braun, Dominique L; Hampel, Benjamin; Kouyos, Roger; Nguyen, Huyen; Shah, Cyril; Flepp, Markus; Stöckle, Marcel; Conen, Anna; Béguelin, Charles; Künzler-Heule, Patrizia; Nicca, Dunja; Schmid, Patrick; Delaloye, Julie; Rougemont, Mathieu; Bernasconi, Enos; Rauch, Andri; Günthard, Huldrych F; Böni, Jürg; Fehr, Jan S; Swiss HIV Cohort Study (2019). High Cure Rates With Grazoprevir-Elbasvir With or Without Ribavirin Guided by Genotypic Resistance Testing Among Human Immunodeficiency Virus/Hepatitis C Virus-coinfected Men Who Have Sex With Men. Clinical Infectious Diseases, 68(4):569-576.

Braun, Dominique L; Hampel, Benjamin; Martin, Eileen; Kouyos, Roger; Kusejko, Katharina; Grube, Christina; Flepp, Markus; Stöckle, Marcel; Conen, Anna; Béguelin, Charles; Schmid, Patrick; Delaloye, Julie; Rougemont, Mathieu; Bernasconi, Enos; Rauch, Andri; Günthard, Huldrych F; Böni, Jürg; Fehr, Jan S; Swiss HIV Cohort Study (2019). High Number of Potential Transmitters Revealed in a Population-based Systematic Hepatitis C Virus RNA Screening Among Human Immunodeficiency Virus-infected Men Who Have Sex With Men. Clinical Infectious Diseases, 68(4):561-568.

Bachmann, Nadine; von Braun, Amrei; Labhardt, Niklaus D; Kadelka, Claus; Günthard, Huldrych F; Sekaggya-Wiltshire, Christine; Castelnuovo, Barbara; Kambugu, Andrew; Lejone, Thabo I; Böni, Jürg; Yerly, Sabine; Perreau, Matthieu; Klimkait, Thomas; Kouyos, Roger D; Fehr, Jan; Swiss HIV Cohort Study (2019). Importance of routine viral load monitoring: higher levels of resistance at ART failure in Uganda and Lesotho compared with Switzerland. Journal of Antimicrobial Chemotherapy, 74(2):468-472.

Briney, Bryan; Inderbitzin, Anne; Joyce, Collin; Burton, Dennis R (2019). Commonality despite exceptional diversity in the baseline human antibody repertoire. Nature, 566(7744):393-397.

Günthard, Huldrych F; Calvez, Vincent; Paredes, Roger; Pillay, Deenan; Shafer, Robert W; Wensing, Annemarie M; Jacobsen, Donna M; Richman, Douglas D (2019). Human Immunodeficiency Virus Drug Resistance: 2018 Recommendations of the International Antiviral Society-USA Panel. Clinical Infectious Diseases, 68(2):177-187.

von Braun, Amrei; Castelnuovo, Barbara; Ledergerber, Bruno; Cusato, Jessica; Buzibye, Allan; Kambugu, Andrew; Fehr, Jan; Calcagno, Andrea; Lamorde, Mohammed; Sekaggya-Wiltshire, Christine (2019). High efavirenz serum concentrations in TB/HIV-coinfected Ugandan adults with a CYP2B6 516 TT genotype on anti-TB treatment. Journal of Antimicrobial Chemotherapy, 74(1):135-138.

Vukovic, S; Anagnostopoulos, A; Zbinden, R; Schönenberger, L; Guillod, C; French, L E; Navarini, A; Roider, E (2019). Schmerzhafte Lymphadenopathie nach Insektenstich – ein Fallbericht. Der Hautarzt, 70(1):47-50.

Schreiber, Peter W; Bischoff-Ferrari, Heike A; Boggian, Katia; van Delden, Christian; Enriquez, Natalia; Fehr, Thomas; Garzoni, Christian; Hirsch, Hans H; Hirzel, Cédric; Manuel, Oriol; Meylan, Pascal; Saleh, Lanja; Weisser, Maja; Mueller, Nicolas J; Swiss Transplant Cohort Study (2019). Vitamin D status and risk of infections after liver transplantation in the Swiss Transplant Cohort Study. Transplant International, 32(1):49-58.

Quteineh, Lina; Wójtowicz, Agnieszka; Bochud, Pierre-Yves; Crettol, Severine; Vandenberghe, Frederik; Venetz, Jean-Pierre; Manuel, Oriol; Golshayan, Dela; Lehmann, Roger; Mueller, Nicolas J; Binet, Isabelle; van Delden, Christian; Steiger, Jürg; Mohacsi, Paul; Dufour, Jean-Francois; Soccal, Paola M; Kutalik, Zoltan; Marques-Vidal, Pedro; Vollenweider, Peter; Recher, Mike; Hess, Christoph; Pascual, Manuel; Eap, Chin B; Swiss Transplant Cohort Study (2019). Genetic immune and inflammatory markers associated with diabetes in solid organ transplant recipients. American Journal of Transplantation, 19(1):238-246.

Tschumi, Fabian; Brugger, Silvio D; Braun, Dominique L (2019). CME: Dyslipidämie und kardiovaskuläres Risiko bei HIV-infizierten Patienten CME-Fragen. Praxis, 108(7):451-458.

Bächli, Patrik Michael. Challenging cases during clinical clerkships beyond the domain of the "medical expert" : an analysis of students' case vignettes. 2019, University of Zurich, Faculty of Medicine.

Braun, Dominique L. Epidemiology, risk factors and clinical presentation of sexually transmitted infections. 2019, University of Zurich, Faculty of Medicine.

Weber, R; Deplazes, P; Mathis, A (2019). Microsporidia. In: Carroll, K C; et al. Manual of Clinical Microbiology, Twelfth Edition. Washington DC: ASM Press, 2305-2316.

Turk, Teja. Modeling Complex Data to Assess the Epidemiology and Pathogenesis of Viral Infections. 2019, University of Zurich, Faculty of Science.

Bachmann, Nadine. Quantifying the Obstacles Towards HIV Elimination : From the Individual to the Population Perspective. 2019, University of Zurich, Faculty of Science.

Weissberg, Dana. Ten years of antiretroviral therapy : incidences, patterns and risk factors of opportunistic infections in an urban Ugandan cohort. 2019, University of Zurich, Faculty of Medicine.

Müller, Christina. The Era of Combined Antiretroviral Therapy (cART): Challenges and Perspectives. 2019, University of Zurich, Faculty of Science.

Schwarz, Hila. TheTransFLUas influenza transmission study in acute healthcare - recruitment rates and protocol adherence in healthcare workers and inpatients. 2019, Universität Spital Zürich, Faculty of Medicine.

Baumann, Anna Magdalena Susan. Virological outcome of patients with HIV drug resistance attending an urban outpatient clinic in Uganda : a need for structured adherence counseling and third-line treatment options. 2019, University of Zurich, Faculty of Medicine.

2018

Rochat, Mary-Aude; Schlaepfer, Erika; Kuster, Stefan P; Li, Duo; Audige, Annette; Ivic, Sandra; Fahrny, Audrey; Speck, Roberto F (2018). Monitoring HIV DNA and cellular activation markers in HIV-infected humanized mice under cART. Virology Journal, 15:191.

Kuster, Sabine; Stampf, Susanne; Gerber, Bernhard; Baettig, Veronika; Weisser, Maja; Gerull, Sabine; Medinger, Michael; Passweg, Jakob; Schanz, Urs; Garzoni, Christian; Berger, Christoph; Chalandon, Yves; Mueller, Nicolas J; van Delden, Christian; Neofytos, Dionysios; Khanna, Nina; Swiss Transplant Cohort Study (2018). Incidence and outcome of invasive fungal diseases after allogeneic hematopoietic stem cell transplantation: A Swiss transplant cohort study. Transplant Infectious Disease, 20(6):e12981.

Conconi, Annarita; Zucca, Emanuele; Margiotta-Casaluci, Gloria; Darling, Katharine; Hasse, Barbara; Battegay, Manuel; Staehelin, Cornelia; Novak, Urban; Schmid, Patrick; Scherrer, Alexandra; Dirnhofer, Stephan; Kwee, Ivo; Nassi, Luca; Cavalli, Franco; Gaidano, Gianluca; Bertoni, Francesco; Bernasconi, Enos; Swiss HIV Cohort Study (2018). Population-based outcome analysis of diffuse large B-cell lymphoma in people living with HIV infection and competent individuals. Hematological oncology, 36(5):757-764.

Neofytos, Dionysios; Hirzel, Cedric; Boely, Elsa; Lecompte, Thanh; Khanna, Nina; Mueller, Nicolas J; Boggian, Katia; Cusini, Alexia; Manuel, Oriol; van Delden, Christian; Swiss Transplant Cohort Study (2018). Pneumocystis jirovecii pneumonia in solid organ transplant recipients: a descriptive analysis for the Swiss Transplant Cohort. Transplant Infectious Disease, 20(6):e12984.

Schlagenhauf, Patricia; Grobusch, Martin P; Hamer, Davidson H; Asgeirsson, Hilmir; Jensenius, Mogens; Eperon, Gilles; Rothe, Camilla; Isenring, Egon; Fehr, Jan; Schwartz, Eli; Bottieau, Emmanuel; Barnett, Elizabeth D; McCarthy, Anne; Kelly, Paul; Schade Larsen, Carsten; van Genderen, Perry; Stauffer, William; Libman, Michael; Gautret, Philippe (2018). Area of exposure and treatment challenges of malaria in Eritrean migrants: a GeoSentinel analysis. Malaria Journal, 17:443.

Böni, Laura; Kuster, Stefan P; Bartik, Bianka; Zbinden, Reinhard; Zingg, Patrick O; Achermann, Yvonne (2018). Association of Cutibacterium avidum Colonization in the Groin With Obesity: A Potential Risk Factor for Hip Periprosthetic Joint Infection. Clinical Infectious Diseases, 67(12):1878-1882.

Saag, Michael S; Günthard, Huldrych F; Smith, Davey M (2018). Baseline Genotype Testing to Assess Drug Resistance Before Beginning HIV Treatment-Reply. JAMA : the Journal of the American Medical Association, 320(20):2154.

Leuppi-Taegtmeyer, Anne B; Decosterd, Laurent; Osthoff, Michael; Mueller, Nicolas J; Buclin, Thierry; Corti, Natascia (2018). Multicenter population pharmacokinetic study of colistimethate sodium and colistin dosed as in normal renal function in patients on continuous renal replacement therapy. Antimicrobial Agents and Chemotherapy, 63(2):e01957-18.

Vernazza, Pietro; Tschudin Sutter, Sarah; Kronenberg, Andreas; Hauser, Christoph; Huttner, Benedikt; Manuel, Oriol; Kuster, Stefan; Scheidegger, Claude; Berger, Christoph; Müller, Nicolas (2018). Entwicklung infektiologischer Guidelines – ein kontinuierlicher Prozess. Swiss Medical Forum, 18(46):963-965.

Kälin, Marisa; Hampel, Benjamin; Müller, Nicolas (2018). Multiresistenz: Fälle aus dem klinischen Alltag. Swiss Medical Forum:966-968.

Kritikos, A; Neofytos, D; Khanna, N; Schreiber, P W; Boggian, K; Bille, J; Schrenzel, J; Mühlethaler, K; Zbinden, R; Bruderer, T; Goldenberger, D; Pfyffer, G; Conen, A; Van Delden, C; Zimmerli, S; Sanglard, D; Bachmann, D; Marchetti, O; Lamoth, F; Fungal Infection Network of Switzerland (FUNGINOS) (2018). Accuracy of Sensititre YeastOne echinocandins epidemiological cut-off values for identification of FKS mutant Candida albicans and Candida glabrata: a ten year national survey of the Fungal Infection Network of Switzerland (FUNGINOS). Clinical Microbiology and Infection, 24(11):1214.e1-1214.e4.

Bibert, Stéphanie; Wojtowicz, Agnieszka; Taffé, Patrick; Tarr, Philip E; Bernasconi, Enos; Furrer, Hansjakob; Günthard, Huldrych F; Hoffmann, Matthias; Kaiser, Laurent; Osthoff, Michael; Fellay, Jacques; Cavassini, Matthias; Bochud, Pierre-Yves; Swiss HIV Cohort Study (2018). IFNL3/4 polymorphisms are associated with AIDS-related Kaposi's sarcoma. AIDS, 32(18):2759-2765.

Plate, Andreas; Stadler, Laura; Sutter, Reto; Anagnostopoulos, Alexia; Frustaci, Dario; Zbinden, Reinhard; Fucentese, Sandro F; Zinkernagel, Annelies S; Zingg, Patrick O; Achermann, Yvonne (2018). Inflammatory disorders mimicking periprosthetic joint infections may result in false positive α-defensin. Clinical Microbiology and Infection, 24(11):1212.e1-1212.e6.

Schreiber, Peter W; Hasse, Barbara; Sax, Hugo (2018). Mycobacterium chimaera infections after cardiac surgery - lessons learned. Clinical Microbiology and Infection, 24(11):1117-1118.

Rohner, E; Bütikofer, L; et al; Hasse, B (2018). Non-Hodgkin lymphoma risk in adults living with HIV across five continents: a multicohort study. AIDS, 32(18):2777-2786.

Kusejko, K; Marzel, A; Hampel, B; Bachmann, N; Nguyen, H; Fehr, J; Braun, D L; Battegay, M; Bernasconi, E; Calmy, A; Cavassini, M; Hoffmann, M; Böni, J; Yerly, S; Klimkait, T; Perreau, M; Rauch, A; Günthard, H F; Kouyos, R D; Swiss HIV Cohort Study (2018). Quantifying the drivers of HIV transmission and prevention in men who have sex with men: a population model-based analysis in Switzerland. HIV Medicine, 19(10):688-697.

Weissberg, Dana; Mubiru, Frank; Kambugu, Andrew; Fehr, Jan; Kiragga, Agnes; von Braun, Amrei; Baumann, Anna; Kaelin, Marisa; Sekaggya-Wiltshire, Christine; Kamya, Moses; Castelnuovo, Barbara (2018). Ten years of antiretroviral therapy: Incidences, patterns and risk factors of opportunistic infections in an urban Ugandan cohort. PLoS ONE, 13(11):e0206796.

Achermann, Yvonne; Zinkernagel, Annelies S (2018). Identifying the Pathogen by Multiplex Polymerase Chain Reaction in Bone and Joint Infections: Challenges and Future. Journal of Rheumatology, 45(11):1497-1500.

Schreiber, Peter W; Sax, Hugo; Wolfensberger, Aline; Clack, Lauren; Kuster, Stefan P; SwissNoso (2018). The preventable proportion of healthcare-associated infections 2005-2016: Systematic review and meta-analysis. Infection Control and Hospital Epidemiology, 39(11):1277-1295.

Summerauer, Andrea Maria; Colombo, Lorenzo; Ogwang, Rodney; Berger, Christoph; Fehr, Jan; Bürgler, Simone (2018). High purity high yield tandem B and T helper cell isolation for qRT-PCR analysis suitable for basically equipped laboratories. Malaria Journal, 17:395.

Kalt, Fabian; Schulthess, Bettina; Sidler, Fabian; Herren, Sebastian; Fucentese, Sandro F; Zingg, Patrick O; Berli, Martin; Zinkernagel, Annelies S; Zbinden, Reinhard; Achermann, Yvonne (2018). Corynebacterium species rarely cause orthopedic infections. Journal of Clinical Microbiology, 56(12):e01200-18.

Vulin, Clément; Leimer, Nadja; Huemer, Markus; Ackermann, Martin; Zinkernagel, Annelies S (2018). Prolonged bacterial lag time results in small colony variants that represent a sub-population of persisters. Nature Communications, 9:4074.

Clack, Lauren; Zingg, Walter; Saint, Sanjay; Casillas, Alejandra; Touveneau, Sylvie; da Liberdade Jantarada, Fabricio; Willi, Ursina; van der Kooi, Tjallie; Damschroder, Laura J; Forman, Jane H; Harrod, Molly; Krein, Sarah; Pittet, Didier; Sax, Hugo; PROHIBIT Consortium (2018). Implementing infection prevention practices across European hospitals: an in-depth qualitative assessment. BMJ Quality and Safety, 27(10):771-780.

Wolfensberger, Aline; Meier, Marie-Theres; Clack, Lauren; Schreiber, Peter W; Sax, Hugo (2018). Preventing ventilator-associated pneumonia ‒ a mixed-method study to find behavioral leverage for better protocol adherence. Infection Control and Hospital Epidemiology, 39(10):1222-1229.

Simonis, Alexander; Fux, Michaela; Nair, Gayathri; Mueller, Nicolas J; Haralambieva, Eugenia; Pabst, Thomas; Pachlopnik Schmid, Jana; Schmidt, Adrian; Schanz, Urs; Manz, Markus G; Müller, Antonia M S (2018). Allogeneic hematopoietic cell transplantation in patients with GATA2 deficiency-a case report and comprehensive review of the literature. Annals of Hematology, 97(10):1961-1973.

Plate, Andreas; Kohl, Thomas A; Keller, Peter M; Majer, Sabine; Fulchini, Rosamaria; Strahm, Carol; Medugno, Cristoforo; Rancic, Zoran; Husmann, Lars; Sax, Hugo; Niemann, Stefan; Hasse, Barbara (2018). Aortic endograft infection with Mycobacterium chimaera and Granulicatella adiacens, Switzerland, 2014. Emerging Infectious Diseases, 24(9):1700-1704.

Kouyos, Roger D; Rusert, Peter; Kadelka, Claus; Huber, Michael; Marzel, Alex; Ebner, Hanna; Schanz, Merle; Liechti, Thomas; Friedrich, Nikolas; Braun, Dominique L; Scherrer, Alexandra U; Weber, Jacqueline; Uhr, Therese; Leemann, Christine; Kuster, Herbert; Cavassini, Matthias; Bernasconi, Enos; Hoffmann, Matthias; Calmy, Alexandra; Battegay, Manuel; Rauch, Andri; Yerly, Sabine; Aubert, Vincent; Klimkait, Thomas; Böni, Jürg; Metzner, Karin J; Günthard, Huldrych F; Trkola, Alexandra; Swiss HIV Cohort Study; et al (2018). Tracing HIV-1 strains that imprint broadly neutralizing antibody responses. Nature, 561(7723):406-410.

Müller, Nicolas; Hasse, Barbara (2018). Erfolge und Herausforderungen im Kampf gegen Infektionskrankheiten. Schweizerische Ärztezeitung (SÄZ), 99(36):1167-1168.

Hampel, Benjamin; Reinacher, Matthias; Fehr, Jan S (2018). HIV pre-exposure prophylaxis (PrEP): Is it time to rethink HIV prevention in travelers? Travel Medicine and Infectious Disease, 25:6-7.

Isenring, Egon; Fehr, Jan; Gültekin, Nejla; Schlagenhauf, Patricia (2018). Infectious disease profiles of Syrian and Eritrean migrants presenting in Europe: A systematic review. Travel Medicine and Infectious Disease, 25:65-76.

Wolfensberger, Aline; Clack, Lauren; Kuster, Stefan P; Passerini, Simone; Mody, Lona; Chopra, Vineet; Mann, Jason; Sax, Hugo (2018). Transfer of pathogens to and from patients, healthcare providers, and medical devices during care activity-a systematic review and meta-analysis. Infection Control and Hospital Epidemiology, 39(09):1093-1107.

Rifaat, Mario; Depmeier, Carsten; Jeger, Victor; Schneemann, Markus; Anagnostopoulos, Alexia (2018). CME: Fusobacterium nucleatum/naviforme – eine seltene, aber nicht zu unterschätzende Ursache für pyogene Leberabszesse. Praxis, 107(19):1007-1012.

Bouatou, Yassine; Gayet Ageron, Angele; Bernasconi, Enos; Battegay, Manuel; Hoffmann, Matthias; Staehelin, Cornelia; Merz, Laurent; Kovari, Helen; Fux, Christoph; de Seigneux, Sophie; Calmy, Alexandra; Swiss HIV Cohort Study (2018). Lipodystrophy Increases the Risk of CKD Development in HIV-Positive Patients in Switzerland: The LIPOKID Study. Kidney International Reports, 3(5):1089-1099.

Robert-Gangneux, Florence; Meroni, Valeria; Dupont, Damien; et al; Mueller, Nicolas J (2018). Toxoplasmosis in Transplant Recipients, Europe, 2010-2014. Emerging Infectious Diseases, 24(8):1497-1504.

Rüegg, Christian; Tarnutzer, Andrea; Kuster, Stefan P; Weber, Rainer; Berger, Christoph; Zinkernagel, Annelies S (2018). Streptococcus pyogenes – ­Kolonisation versus Virulenz. Swiss Medical Forum, 18(33):647-653.

Saag, Michael S; Benson, Constance A; Gandhi, Rajesh T; Hoy, Jennifer F; Landovitz, Raphael J; Mugavero, Michael J; Sax, Paul E; Smith, Davey M; Thompson, Melanie A; Buchbinder, Susan P; Del Rio, Carlos; Eron, Joseph J; Fätkenheuer, Gerd; Günthard, Huldrych F; Molina, Jean-Michel; Jacobsen, Donna M; Volberding, Paul A (2018). Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2018 Recommendations of the International Antiviral Society-USA Panel. JAMA : the Journal of the American Medical Association, 320(4):379-396.

Hatleberg, C I; Ryom, L; d'Arminio Monforte, A; Fontas, E; Reiss, P; Kirk, O; El-Sadr, W; Phillips, A; de Wit, S; Dabis, F; Weber, R; Law, M; Lundgren, J D; Sabin, C (2018). Association between exposure to antiretroviral drugs and the incidence of hypertension in HIV-positive persons: the Data Collection on Adverse Events of Anti-HIV Drugs (D:A:D) study. HIV Medicine, 19(9):605-618.

Kok, Yik Lim; Schmutz, Stefan; Inderbitzin, Anne; Neumann, Kathrin; Kelley, Audrey; Jörimann, Lisa; Shilaih, Mohaned; Vongrad, Valentina; Kouyos, Roger D; Günthard, Huldrych F; Berens, Christian; Metzner, Karin J (2018). Spontaneous reactivation of latent HIV-1 promoters is linked to the cell cycle as revealed by a genetic-insulators-containing dual-fluorescence HIV-1-based vector. Scientific Reports, 8(1):10204.

Hongler, J; Musaazi, J; Ledergerber, B; Eberhard, N; Sekaggya-Wiltshire, C; Keller, P M; Fehr, J; Castelnuovo, B (2018). Comparison of Löwenstein-Jensen and BACTEC MGIT 960 culture for Mycobacterium tuberculosis in people living with HIV. HIV Medicine, 19(9):654-661.

Tomonaga, Yuki; Ten Haaf, Kevin; Frauenfelder, Thomas; Kohler, Malcolm; Kouyos, Roger D; Shilaih, Mohaned; Lorez, Matthias; de Koning, Harry J; Schwenkglenks, Matthias; Puhan, Milo A (2018). Cost-effectiveness of low-dose CT screening for lung cancer in a European country with high prevalence of smoking-A modelling study. Lung Cancer, 121:61-69.

Schreiber, Peter W; Köhler, Nora; Cervera, Rosita; Hasse, Barbara; Sax, Hugo; Keller, Peter M (2018). Detection limit of Mycobacterium chimaera in water samples for monitoring medical device safety: insights from a pilot experimental series. Journal of Hospital Infection, 99(3):284-289.

Salazar-Vizcaya, Luisa; Wandeler, Gilles; Fehr, Jan; Braun, Dominique; Cavassini, Matthias; Stoeckle, Marcel; Bernasconi, Enos; Hoffmann, Matthias; Rougemont, Mathieu; Béguelin, Charles; Rauch, Andri; Swiss HIV Cohort Study (2018). Impact of Direct-Acting Antivirals on the Burden of HCV Infection Among Persons Who Inject Drugs and Men Who Have Sex With Men in the Swiss HIV Cohort Study. Open Forum Infectious Diseases, 5(7):ofy154.

Kusejko, Katharina; Kadelka, Claus; Marzel, Alex; Battegay, Manuel; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Hoffmann, Matthias; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Perreau, Matthieu; Rauch, Andri; Günthard, Huldrych F; Kouyos, Roger D; Swiss HIV Cohort Study (2018). Inferring the age difference in HIV transmission pairs by applying phylogenetic methods on the HIV transmission network of the Swiss HIV Cohort Study. Virus Evolution, 4(2):vey024.

Reinwald, M; Silva, J T; Mueller, N J; Fortún, J; Garzoni, C; de Fijter, J W; Fernández-Ruiz, M; Grossi, P; Aguado, J M (2018). ESCMID Study Group for Infections in Compromised Hosts (ESGICH) Consensus Document on the safety of targeted and biological therapies: an infectious diseases perspective (Intracellular signaling pathways: tyrosine kinase and mTOR inhibitors). Clinical Microbiology and Infection, 24 Suppl:S53-S70.

Sculier, D; Doco-Lecompte, T; Yerly, S; Metzner, K J; Decosterd, L A; Calmy, A (2018). Stable HIV-1 reservoirs on dolutegravir maintenance monotherapy: the MONODO study. HIV Medicine, 19(8):572-577.

Engel, Tanja; Raffenberg, Marieke; Marzolini, Catia; Cavassini, Matthias; Kovari, Helen; Hasse, Barbara; Tarr, Philip E (2018). HIV and Aging - Perhaps Not as Dramatic as We Feared? Gerontology, 64(5):446-456.

Husmann, Lars; Ledergerber, Bruno; Anagnostopoulos, Alexia; Stolzmann, Paul; Sah, Bert-Ram; Burger, Irene A; Pop, Roxana; Weber, Alberto; Mayer, Dieter; Rancic, Zoran; Hasse, Barbara; VASGRA Cohort Study (2018). The role of FDG PET/CT in therapy control of aortic graft infection. European Journal of Nuclear Medicine and Molecular Imaging, 45(11):1987-1997.

Ndumbi, Patricia; Del Romero, J; Pulido, F; Velasco Arribas, M; Dronda, F; Blanco Ramos, J Ramón; García de Olalla, P; Ocaña, I; Belda-Ibañez, J; Del Amo, J; Álvarez-Del Arco, D; aMASE Research Group (2018). Barriers to health care services for migrants living with HIV in Spain. European Journal of Public Health, 28(3):451-457.

Gerber, Lukas; Gaspert, Ariana; Braghetti, Antonio; Zwahlen, Hugo; Wüthrich, Rudolf; Zbinden, Reinhard; Mueller, Nicolas; Fehr, Thomas (2018). Ureaplasma and Mycoplasma in kidney allograft recipients-A case series and review of the literature. Transplant Infectious Disease:e12937.

Depmeier, Carsten; Günthard, Huldrych F; Steiner, Urs C (2018). Infektionen unter Immunsuppression. Praxis, 107(13):689-698.

Kotton, Camille N; Kumar, Deepali; Caliendo, Angela M; Huprikar, Shirish; Chou, Sunwen; Danziger-Isakov, Lara; Humar, Atul (2018). The Third International Consensus Guidelines on the Management of Cytomegalovirus in Solid-organ Transplantation. Transplantation, 102(6):900-931.

Ronit, Andreas; Hatleberg, Camilla Ingrid; Ryom, Lene; Bonnet, Fabrice; El-Sadr, Wafaa; Reiss, Peter; Weber, Rainer; Pradier, Christian; De Wit, Stephane; Law, Matthew; Monforte, Antonella d'Arminio; Lundgren, Jens; Mocroft, Amanda; Phillips, Andrew N; Sabin, Caroline A (2018). Associations between serum albumin and serious non-AIDS events among people living with HIV. AIDS, 32(13):1837-1848.

Strouvelle, Victoria P; Braun, Dominique L; Vongrad, Valentina; Scherrer, Alexandra U; Kok, Yik Lim; Kouyos, Roger D; Stöckle, Marcel; Rauch, Andri; Darling, Katharine; Hoffmann, Matthias; Metzner, Karin J; Günthard, Huldrych F; Zurich Primary HIV Infection Study; Swiss HIV Cohort Study (2018). No Effect of Pegylated Interferon-α on Total HIV-1 DNA Load in HIV-1/HCV Coinfected Patients. Journal of Infectious Diseases, 217(12):1883-1888.

Kadelka, Claus; Liechti, Thomas; Ebner, Hanna; Schanz, Merle; Rusert, Peter; Friedrich, Nikolas; Stiegeler, Emanuel; Braun, Dominique L; Huber, Michael; Scherrer, Alexandra U; Weber, Jacqueline; Uhr, Therese; Kuster, Herbert; Misselwitz, Benjamin; Cavassini, Matthias; Bernasconi, Enos; Hoffmann, Matthias; Calmy, Alexandra; Battegay, Manuel; Rauch, Andri; Yerly, Sabine; Aubert, Vincent; Klimkait, Thomas; Böni, Jürg; Kouyos, Roger D; Günthard, Huldrych F; Trkola, Alexandra; Swiss HIV Cohort Study (2018). Distinct, IgG1-driven antibody response landscapes demarcate individuals with broadly HIV-1 neutralizing activity. Journal of Experimental Medicine, 215(6):1589-1608.

Liechti, Thomas; Günthard, Huldrych F; Trkola, Alexandra (2018). OMIP-047: High-Dimensional phenotypic characterization of B cells. Cytometry. Part A, 93(6):592-596.

Marzel, Alex; Kusejko, Katharina; Weber, Rainer; Bruggmann, Philip; Rauch, Andri; Roth, Jan A; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Hoffmann, Matthias; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Perreau, Matthieu; Günthard, Huldrych F; Kouyos, Roger D; Swiss HIV Cohort Study (2018). The Cumulative Impact of Harm Reduction on the Swiss HIV Epidemic: Cohort Study, Mathematical Model, and Phylogenetic Analysis. Open Forum Infectious Diseases, 5(5):ofy078.

Wright, E J; Grund, B; Robertson, K R; Cysique, L; Brew, B J; Collins, G L; Poehlman-Roediger, M; Vjecha, M J; Penalva de Oliveira, A C; Standridge, B; Carey, C; Avihingsanon, A; Florence, E; Lundgren, J D; Arenas-Pinto, A; Mueller, N J; Winston, A; Nsubuga, M S; Lal, L; Price, R W; INSIGHT START, Neurology Substudy Group (2018). No neurocognitive advantage for immediate antiretroviral treatment in adults with greater than 500 CD4+ T-cell counts. AIDS, 32(8):985-997.

Achhra, Amit C; Sabin, Caroline; Ryom, Lene; Hatleberg, Camilla; Antonella d'Aminio, Monforte; De Wit, Stephane; Phillips, Andrew; Pradier, Christian; Weber, Rainer; Reiss, Peter; El-Sadr, Wafaa; Bonnet, Fabrice; Mocroft, Amanda; Lundgren, Jens; Law, Matthew G (2018). Body Mass Index and The Risk of Serious Non-Aids Events and All Cause Mortality in Treated Hiv-Positive Individuals: D: A: D Cohort Analysis. Journal of Acquired Immune Deficiency Syndromes, 78(5):579-588.

Ryom, Lene; Lundgren, Jens D; El-Sadr, Wafaa; Reiss, Peter; Kirk, Ole; Law, Matthew; Phillips, Andrew; Weber, Rainer; Fontas, Eric; d' Arminio Monforte, Antonella; De Wit, Stéphane; Dabis, Francois; Hatleberg, Camilla I; Sabin, Caroline; Mocroft, Amanda (2018). Cardiovascular disease and use of contemporary protease inhibitors: the D:A:D international prospective multicohort study. The lancet. HIV., 5(6):e291-e300.

Reinschmidt, Sara; Turk, Teja; Tarr, Philip E; Kouyos, Roger; Hauser, Christoph; Schmid, Patrick; Weber, Rainer; Kaufmann, Philipp; Buechel, Ronny R; Kovari, Helen; Swiss HIV Cohort Study (2018). Incidental Findings on Coronary Computed Tomography Angiography in Human Immunodeficiency Virus (HIV)-Positive and HIV-Negative Persons. Open Forum Infectious Diseases:ofy084.

Aebi-Popp, K; Mercanti, V; Voide, C; Nemeth, J; Cusini, A; Jakopp, B; Nicca, D; Rasi, M; Bruno, A; Calmy, A; Martinez de Tejada, B; Swiss HIV Cohort Study (2018). Neglect of attention to reproductive health in women with HIV infection: contraceptive use and unintended pregnancies in the Swiss HIV Cohort Study. HIV Medicine, 19(5):339-346.

Laut, Kamilla; Shepherd, Leah; Radoi, Roxana; Karpov, Igor; Parczewski, Milosz; Mussini, Cristina; Maltez, Fernando; Losso, Marcelo; Chkhartishvili, Nikoloz; Elinav, Hila; Kovari, Helen; et al (2018). Persistent disparities in antiretroviral treatment (ART) coverage and virological suppression across Europe, 2004 to 2015. Eurosurveillance, 23(21):1700382.

Zweifel, Sandrine A; Keller, Peter M; Hasse, Barbara; Barthelmes, Daniel; Böni, Christian (2018). Reply. Ophthalmology, 125(5):e33-e34.

von Braun, Amrei; Sekaggya-Wiltshire, Christine; Bachmann, Nadine; Ssemwanga, Deogratius; Scherrer, Alexandra U; Nanyonjo, Maria; Kapaata, Anne; Kaleebu, Pontiano; Günthard, Huldrych F; Castelnuovo, Barbara; Fehr, Jan; Kambugu, Andrew (2018). HIV-1 drug resistance among Ugandan adults attending an urban out-patient clinic. Journal of Acquired Immune Deficiency Syndromes, 78(5):566-573.

Caro-Vega, Yanink; Schultze, Anna; W Efsen, Anne Marie; Post, Frank A; Panteleev, Alexander; Skrahin, Aliaksandr; Miro, Jose M; Girardi, Enrico; Podlekareva, Daria N; Lundgren, Jens D; Sierra-Madero, Juan; Toibaro, Javier; Andrade-Villanueva, Jaime; Tetradov, Simona; Fehr, Jan; Caylà, Joan; Losso, Marcelo H; Miller, Robert F; Mocroft, Amanda; Kirk, Ole; Crabtree-Ramírez, Brenda (2018). Differences in response to antiretroviral therapy in HIV-positive patients being treated for tuberculosis in Eastern Europe, Western Europe and Latin America. BMC Infectious Diseases, 18(1):191.

Keller, Nadia; Andreoni, Federica; Reiber, Claudine; Luethi-Schaller, Helga; Schuepbach, Reto Andreas; Moch, Holger; Maggio, Ewerton Marques; Zinkernagel, Annelies Sophie (2018). Human Streptococcal Necrotizing Fasciitis Histopathology Mirrored in a Murine Model. American Journal of Pathology, 188(7):1517-1523.

Neofytos, D; Chatzis, O; Nasioudis, D; Boely Janke, E; Doco Lecompte, T; Garzoni, C; Berger, C; Cussini, A; Boggian, K; Khanna, N; Manuel, O; Mueller, N J; van Delden, C; Swiss Transplant Cohort Study (2018). Epidemiology, risk factors and outcomes of invasive aspergillosis in solid organ transplant recipients in the Swiss Transplant Cohort Study. Transplant Infectious Disease, 20(4):e12898.

Mbunkah, Herbert A; Marzel, Alex; Schmutz, Stefan; Kok, Yik Lim; Zagordi, Osvaldo; Shilaih, Mohaned; Nsanwe, Ndi N; Mbu, Eyongetah T; Besong, Lydia M; Sama, Bella A; Orock, Emmanuel; Kouyos, Roger D; Günthard, Huldrych F; Metzner, Karin J (2018). Low prevalence of transmitted HIV-1 drug resistance detected by a dried blood spot (DBS)-based next-generation sequencing (NGS) method in newly diagnosed individuals in Cameroon in the years 2015-16. Journal of Antimicrobial Chemotherapy, 73(7):1917-1929.

Yu, Kang; Davidson, Chelsea L; Wójtowicz, Agnieszka; Lisboa, Luiz; Wang, Ting; Airo, Adriana M; Villard, Jean; Buratto, Jeremie; Sandalova, Tatyana; Achour, Adnane; Humar, Atul; Boggian, Katia; Cusini, Alexia; van Delden, Christian; Egli, Adrian; Manuel, Oriol; Mueller, Nicolas; Bochud, Pierre-Yves; Swiss Transplant Cohort Study; Burshtyn, Deborah N (2018). LILRB1 polymorphisms influence posttransplant HCMV susceptibility and ligand interactions. Journal of Clinical Investigation, 128(4):1523-1537.

Roen, A; Laut, K; Pelchen-Matthews, A; et al; Scherrer, A; EuroSIDA Study Group (2018). Abacavir usage patterns and hypersensitivity reactions in the EuroSIDA cohort. HIV Medicine, 19(4):252-260.

Marzel, Alex; Kouyos, Roger D; Reinschmidt, Sara; Balzer, Katharina; Garon, Fabienne; Spitaleri, Monica; Matthes, Nicolas; Suter, Paolo; Weber, Rainer; Staehelin, Cornelia; Lecompte, Thanh Doco; Tarr, Philip; Kovari, Helen; Swiss HIV Cohort Study (2018). Dietary Patterns and Physical Activity Correlate With Total Cholesterol Independently of Lipid-Lowering Drugs and Antiretroviral Therapy in Aging People Living With Human Immunodeficiency Virus. Open Forum Infectious Diseases, 5(4):ofy067.

Schreiber, Peter W; Schmid, Adrian; Fagagnini, Stefania; Kröger, Arne; Vrugt, Bart; Reiner, Cäcilia S; Boggian, Katia; Schiesser, Marc; Müllhaupt, Beat; Günthard, Huldrych F (2018). MRI and PET-CT Failed to Differentiate Between Hepatic Malignancy and Brucelloma. Open Forum Infectious Diseases, 5(4):ofy052.

Aebi-Popp, K; Wandeler, G; Salazar-Vizcaya, L; Metzner, K; Stöckle, M; Cavassini, M; Hoffmann, M; Lüthi, A; Suter, F; Bernasconi, E; Fehr, Jan; Furrer, H; Rauch, A; Swiss HIV Cohort Study (2018). Rapid decline of anti-hepatitis C virus (HCV) antibodies following early treatment of incident HCV infections in HIV-infected men who have sex with men. HIV Medicine, 19(6):420-425.

Tarr, Philip E; Ledergerber, Bruno; Calmy, Alexandra; Doco-Lecompte, Thanh; Marzel, Alex; Weber, Rainer; Kaufmann, Philipp A; Nkoulou, René; Buechel, Ronny R; Kovari, Helen; Swiss HIV Cohort Study (2018). Subclinical coronary artery disease in Swiss HIV-positive and HIV-negative persons. European Heart Journal, 39(23):2147-2154.

Hatleberg, Camilla I; Ryom, Lene; El-Sadr, Wafaa; Mocroft, Amanda; Reiss, Peter; De Wit, Stephane; Dabis, Francois; Pradier, Christian; d'Arminio Monforte, Antonella; Kovari, Helen; Law, Matthew; Lundgren, Jens D; Sabin, Caroline A (2018). Gender differences in the use of cardiovascular interventions in HIV-positive persons; the D:A:D Study. Journal of the International Aids Society:e25083.

Sekaggya-Wiltshire, Christine; von Braun, Amrei; Lamorde, Mohammed; Ledergerber, Bruno; Buzibye, Allan; Henning, Lars; Musaazi, Joseph; Gutteck, Ursula; Denti, Paolo; de Kock, Miné; Jetter, Alexander; Byakika-Kibwika, Pauline; Eberhard, Nadia; Matovu, Joshua; Joloba, Moses; Muller, Daniel; Manabe, Yukari C; Kamya, Moses R; Corti, Natascia; Kambugu, Andrew; Castelnuovo, Barbara; Fehr, Jan S (2018). Delayed Sputum Culture Conversion in Tuberculosis-Human Immunodeficiency Virus-Coinfected Patients With Low Isoniazid and Rifampicin Concentrations. Clinical Infectious Diseases, 67(5):708-716.

Becker, A S; Blüthgen, C; Phi Van, V D; Sekaggya-Wiltshire, C; Castelnuovo, B; Kambugu, A; Fehr, J; Frauenfelder, T (2018). Detection of tuberculosis patterns in digital photographs of chest X-ray images using Deep Learning: feasibility study. The International Journal of Tuberculosis and Lung Disease, 22(3):328-335.

Clack, Lauren; Passerini, Simone; Wolfensberger, Aline; Sax, Hugo; Manser, Tanja (2018). Frequency and Nature of Infectious Risk Moments During Acute Care Based on the INFORM Structured Classification Taxonomy. Infection Control and Hospital Epidemiology, 39(3):272-279.

Sommerstein, Rami; Hasse, Barbara; Marschall, Jonas; Sax, Hugo; Genoni, Michele; Schlegel, Matthias; Widmer, Andreas F; Swiss Chimaera Taskforce (2018). Global Health Estimate of Invasive Mycobacterium chimaera Infections Associated with Heater-Cooler Devices in Cardiac Surgery. Emerging Infectious Diseases, 24(3):576-578.

Clack, Lauren; Passerini, Simone; Manser, Tanja; Sax, Hugo (2018). Likelihood of Infectious Outcomes Following Infectious Risk Moments During Patient Care-An International Expert Consensus Study and Quantitative Risk Index. Infection Control and Hospital Epidemiology, 39(3):280-289.

Béguelin, Charles; Suter, Annatina; Bernasconi, Enos; Fehr, Jan; Kovari, Helen; Bucher, Heiner C; Stoeckle, Marcel; Cavassini, Mathias; Rougemont, Mathieu; Schmid, Patrick; Wandeler, Gilles; Rauch, Andri; Swiss HIV Cohort Study (2018). Trends in HCV treatment uptake, efficacy and impact on liver fibrosis in the Swiss HIV Cohort Study. Liver International, 38(3):424-431.

Kühnert, Denise; Kouyos, Roger; Shirreff, George; Pečerska, Jūlija; Scherrer, Alexandra U; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Günthard, Huldrych F; Stadler, Tanja; Bonhoeffer, Sebastian; Swiss HIV Cohort Study (2018). Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics. PLoS Pathogens, 14(2):e1006895.

Seidl, Kati; Leemann, Michèle; Zinkernagel, Annelies S (2018). The ArlRS two-component system is a regulator of Staphylococcus aureus-induced endothelial cell damage. European Journal of Clinical Microbiology & Infectious Diseases, 37(2):289-292.

Bachofner, Jacqueline; Valli, Piero V; Bergamin, Irina; Kröger, Arne; Künzler, Patrizia; Baserga, Adriana; Braun, Dominique L; Seifert, Burkhardt; Moncsek, Anja; Fehr, Jan; Semela, David; Magenta, Lorenzo; Müllhaupt, Beat; Terziroli Beretta-Piccoli, Benedetta; Mertens, Joachim; Swiss Hepatitis C Cohort Study (2018). Excellent outcome of direct antiviral treatment for chronic hepatitis C in Switzerland. Swiss Medical Weekly, 148:w14560.

Orasch, Christina; Mertz, Dominik; Garbino, Jorge; van Delden, Christian; Emonet, Stephane; Schrenzel, Jacques; Zimmerli, Stefan; Damonti, Lauro; Mühlethaler, Konrad; Imhof, Alexander; Ruef, Christian; Fehr, Jan; Zbinden, Reinhard; Boggian, Katia; Bruderer, Thomas; Flückiger, Ursula; Conen, Anna; Khanna, Nina; Frei, Reno; Bregenzer, Thomas; Lamoth, Frédéric; Erard, Véronique; Bochud, Pierre-Yves; Calandra, Thierry; Bille, Jacques; Marchetti, Oscar (2018). Fluconazole non-susceptible breakthrough candidemia after prolonged low-dose prophylaxis: a prospective FUNGINOS study. Journal of Infection, 76(5):489-495.

Cusini, A; Béguelin, C; Stampf, S; Boggian, K; Garzoni, C; Koller, M; Manuel, O; Meylan, P; Mueller, N J; Hirsch, H H; Weisser, M; Berger, C; van Delden, C; Swiss Transplant Cohort Study (2018). Clostridium difficile infection is associated with graft loss in solid organ transplant recipients. American Journal of Transplantation, 18(7):1745-1754.

Schreiber, Peter W; Bischoff-Ferrari, Heike A; Boggian, Katia; Bonani, Marco; van Delden, Christian; Enriquez, Natalia; Fehr, Thomas; Garzoni, Christian; Hirsch, Hans H; Hirzel, Cédric; Manuel, Oriol; Meylan, Pascal; Saleh, Lanja; Weisser, Maja; Mueller, Nicolas J; Swiss Transplant Cohort Study (2018). Bone metabolism dynamics in the early post-transplant period following kidney and liver transplantation. PLoS ONE, 13(1):e0191167.

Andreoni, Federica; Ugolini, Fabio; Keller, Nadia; Neff, Andrina; Nizet, Victor; Hollands, Andrew; Marques Maggio, Ewerton; Zinkernagel, Annelies S; Schuepbach, Reto A (2018). Immunoglobulin Attenuates Streptokinase-Mediated Virulence in Streptococcus dysgalactiae Subspecies equisimilis Necrotizing Fasciitis. Journal of Infectious Diseases, 217(2):270-279.

Kuster, Stefan; Wolfensberger, Aline; Schreiber, Peter; Clack, Lauren; Sax, Hugo (2018). Infektiologie: Infektionsprävention ist «Change Management». Swiss Medical Forum, 18(0102):13-15.

Sabin, Caroline A; Ryom, Lene; d'Arminio Monforte, Antonella; Hatleberg, Camilla I; Pradier, Christian; El-Sadr, Wafaa M; Kirk, Ole; Weber, Rainer; Phillips, Andrew N; Mocroft, Amanda; Bonnet, Fabrice; Law, Matthew; De Wit, Stephane; Reiss, Peter; Lundgren, Jens D (2018). Abacavir use and risk of recurrent myocardial infarction: the D: A: D study. AIDS, 32(1):79-88.

Bertels, Frederic; Marzel, Alex; Leventhal, Gabriel; Mitov, Venelin; Fellay, Jacques; Günthard, Huldrych F; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Battegay, Manuel; Rauch, Andri; Cavassini, Matthias; Calmy, Alexandra; Bernasconi, Enos; Schmid, Patrick; Scherrer, Alexandra U; Müller, Viktor; Bonhoeffer, Sebastian; Kouyos, Roger; Regoes, Roland R; Swiss HIV Cohort Study (2018). Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T Cell Decline and Per-Parasite Pathogenicity. Molecular Biology and Evolution, 35(1):27-37.

BEEHIVE Collaboration; Wymant, Chris; et al; Fellay, Jacques; Günthard, Huldrych F; Kouyos, Roger; van Sighem, Ard; Reiss, Peter (2018). Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver. Virus Evolution, 4(1):vey007.

Grubhofer, Florian; Imam, Mohamed A; Wieser, Karl; Achermann, Yvonne; Meyer, Dominik C; Gerber, Christian (2018). Staged Revision With Antibiotic Spacers for Shoulder Prosthetic Joint Infections Yields High Infection Control. Clinical Orthopaedics and Related Research, 476(1):146-152.

Sekaggya-Wiltshire, Christine; Lamorde, Mohammed; Kiragga, Agnes N; Dooley, Kelly E; Kamya, Moses R; Kambugu, Andrew; Fehr, Jan; Manabe, Yukari C; Castelnuovo, Barbara (2018). The utility of pharmacokinetic studies for the evaluation of exposure-response relationships for standard dose anti-tuberculosis drugs. Tuberculosis, 108:77-82.

Abela, Irene A; Murer, Christian; Schuurmans, Macé M; Schmitt, Juergen W; Muller, Frabci; Imkamp, Frank; Mueller, Nicolas J; Benden, Christian (2018). A cluster of scedosporiosis in lung transplant candidates and recipients: the Zurich experience and review of the literature. Transplant Infectious Disease, 20(1):e12792.

Kohler, Philipp; Fulchini, Rosamaria; Albrich, Werner C; Egli, Adrian; Balmelli, Carlo; Harbarth, Stephan; Héquet, Delphine; Kahlert, Christian R; Kuster, Stefan P; Petignat, Christiane; Schlegel, Matthias; Kronenberg, Andreas (2018). Antibiotic resistance in Swiss nursing homes: analysis of National Surveillance Data over an 11-year period between 2007 and 2017. Antimicrobial Resistance and Infection Control, 7:88.

Brozy, Johannes; Schlaepfer, Erika; Mueller, Christina K S; Rochat, Mary-Aude; Rampini, Silvana K; Myburgh, Renier; Raum, Tobias; Kufer, Peter; Baeuerle, Patrick A; Muenz, Markus; Speck, Roberto F (2018). Antiviral Activity of HIV gp120-Targeting Bispecific T Cell Engager Antibody Constructs. Journal of Virology, 92(14):1-13.

Swiss HIV Cohort Study; Oxford IBD Cohort Investigators; Kurioka, Ayako; Cosgrove, Cormac; Simoni, Yannick; van Wilgenburg, Bonnie; Geremia, Alessandra; Björkander, Sophia; Sverremark-Ekström, Eva; Thurnheer, Christine; Günthard, Huldrych F; Khanna, Nina; Walker, Lucy Jane; Arancibia-Cárcamo, Carolina V; Newell, Evan W; Willberg, Christian B; Klenerman, Paul; et al (2018). CD161 defines a functionally distinct subset of pro-inflammatory natural killer cells. Frontiers in Immunology, 9:486.

Kohler, Philipp Patrick. Carbapenemase-producing Enterobacteriaceae : epidemiological aspects and impact of initial antibiotic treatment on mortality. 2018, University of Zurich, Faculty of Medicine.

Strouvelle, Victoria P. Characterisation of the HIV-1 Life Cycle and Reservoir in vivo. 2018, University of Zurich, Faculty of Science.

Caniglia, Ellen C; Phillips, Andrew; Porter, Kholoud; Sabin, Caroline A; Winston, Alan; Logan, Roger; Gill, John; Vandenhende, Marie-Anne; Barger, Diana; Lodi, Sara; Moreno, Santiago; Arribas, José Ramón; Pacheco, Antonio; Cardoso, Sandra W; Chrysos, George; Gogos, Charalabos; Abgrall, Sophie; Costagliola, Dominique; Meyer, Laurence; Seng, Remonie; van Sighem, Ard; Reiss, Peter; Muga, Roberto; Hoyos, Santiago Pérez; Braun, Dominique; Hauser, Christoph; Barrufet, Pilar; Leyes, Maria; Tate, Janet; Justice, Amy; Hernán, Miguel A (2018). Commonly prescribed antiretroviral therapy regimens and incidence of AIDS-defining neurological conditions. Journal of Acquired Immune Deficiency Syndromes, 77(1):102-109.

Marzel, Alex. Computational and molecular analyses of HIV epidemiology in Switzerland: from quantifying transmission and coinfections to behavioral determinants of health. 2018, University of Zurich, Faculty of Science.

Clack, Lauren. Development and application of a behavioural science paradigm for infection prevention. 2018, University of Zurich, Faculty of Arts.

Liechti, Thomas; Kadelka, Claus; Ebner, Hanna; Friedrich, Nikolas; Kouyos, Roger D; Gunthard, Huldrych F; Trkola, Alexandra (2018). Development of a high-throughput bead based assay system to measure HIV-1 specific immune signatures in clinical samples. Journal of Immunological Methods, 454:48-58.

Keller, Jonas; Wolfensberger, Aline; Clack, Lauren; Kuster, Stefan P; Dunic, Mesida; Eis, Doris; Flammer, Yvonne; Keller, Dagmar I; Sax, Hugo (2018). Do wearable alcohol-based handrub dispensers increase hand hygiene compliance? - a mixed-methods study. Antimicrobial Resistance and Infection Control, 7:143.

Poljak, M; Akova, M; Friedrich, A W; Rodríguez-Baño, J; Sanguinetti, M; Tacconelli, E; Zinkernagel, A (2018). ESCMID-an international Europe-based society committed to fostering cross-border collaboration and education to improve patient care. Clinical Microbiology and Infection, 24(1):1-2.

Lodi, Sara; Günthard, Huldrych F; Dunn, David; Garcia, Federico; Logan, Roger; Jose, Sophie; Bucher, Heiner C; Scherrer, Alexandra U; Schneider, Marie-Paule; Egger, Matthias; Glass, Tracy R; Reiss, Peter; van Sighem, Ard; Boender, T Sonia; Phillips, Andrew N; Porter, Kholoud; Hawkins, David; Moreno, Santiago; Monge, Susana; Paraskevis, Dimitrios; Simeon, Metallidis; Vourli, Georgia; Sabin, Caroline; Hernán, Miguel A; HIV-CAUSAL Collaboration* (2018). Effect of immediate initiation of antiretroviral treatment on the risk of acquired HIV drug resistance. AIDS, 32(3):327-335.

Scherrer, A U. Epidemiology and clinical impact of HIV-1 drug resistance. 2018, University of Zurich, Faculty of Medicine.

Fahrny, Audrey. Exploring HIV latency and dissecting the contribution of APOBEC3G to HIV evolution using humanized mice models. 2018, University of Zurich, Faculty of Science.

Amstutz, Amalia. Gründe für Renten der Schweizerischen Unfallversicherungsanstalt (SUVA) nach Zeckenstich-assoziierter Lyme-Borreliose oder Frühsommermeningoenzephalitis. 2018, University of Zurich, Faculty of Medicine.

Braun, Dominique L; Marzel, Alex; Steffens, Daniela; Schreiber, Peter W; Grube, Christina; Scherrer, Alexandra U; Kouyos, Roger D; Günthard, Huldrych F; Swiss HIV Cohort Study (2018). High rates of subsequent asymptomatic STIs and risky sexual behavior in patients initially presenting with primary HIV-1 infection. Clinical Infectious Diseases, 66(5):735-742.

Stocker, Alina; Theus, Christoph; Boggian, Katia; Mueller, Nicolas J; Fleisch, Felix; Fehr, Thomas (2018). Hohe Inzidenz von Varizella-Zoster-Meningoenzephalitiden in Graubünden im Jahr 2014. Praxis, 107(7):363-371.

Keller, Nadia Sandra. How Interferon Boosts Our Immune System to Clear Group A Streptococcus, the "Flesh-Eating Bacterium". 2018, University of Zurich, Faculty of Science.

Beck, Samuel Stefan. How the Start into the Clinical Elective Year could be Improved: Qualitative Results and Recommendations from Student Interviews. 2018, University of Zurich, Faculty of Medicine.

Seijsing, Johan; Sobieraj, Anna M; Keller, Nadia; Shen, Yang; Zinkernagel, Annelies S; Loessner, Martin J; Schmelcher, Mathias (2018). Improved Biodistribution and Extended Serum Half-Life of a Bacteriophage Endolysin by Albumin Binding Domain Fusion. Frontiers in Microbiology, 9:2927.

Ajdler-Schaeffler, Evelyne; Scherrer, Alexandra U; Keller, Peter M; Anagnostopoulos, Alexia; Hofmann, Michael; Rancic, Zoran; Zinkernagel, Annelies S; Bloemberg, Guido V; Hasse, Barbara K; VASGRA Cohort (2018). Increased pathogen identification in vascular graft infections by the combined use of tissue cultures and 16S rRNA gene polymerase chain reaction. Frontiers in Medicine, 5:169.

Steiner, Raphael E; Kridel, Robert; Giostra, Emiliano; McKee, Thomas A; Achermann, Rita; Mueller, Nicolas J; Manuel, Oriol; Dickenmann, Michael; Schuurmans, Macé M; de Leval, Laurence; Fehr, Thomas; Tinguely, Marianne; Binet, Isabelle; Cogliatti, Sergio; Haralamvieva, Eugenia; Koller, Michael; Swiss Transplant Cohort Study; Dietrich, Pierre-Yves (2018). Low 5-year cumulative incidence of post-transplant lymphoproliferative disorders after solid organ transplantation in Switzerland. Swiss Medical Weekly, 148:w14596.

Mbunkah, Herbert A. Molecular epidemiology of transmitted HIV-1 drug resistance in drug-naive and newly diagnosed patients in Cameroon. 2018, University of Zurich, Faculty of Science.

Salazar-Vizcaya, L; Kouyos, R D; Fehr, J; Braun, D; Estill, J; Bernasconi, E; Delaloye, J; Stöckle, M; Schmid, P; Rougemont, M; Wandeler, G; Günthard, H F; Keiser, O; Rauch, A; Swiss HIV Cohort Study (2018). On the potential of a short-term intensive intervention to interrupt HCV transmission in HIV-positive men who have sex with men: A mathematical modelling study. Journal of Viral Hepatitis, 25(1):10-18.

Anagnostopoulos, Alexia; Bossard, Daniel Andreas; Ledergerber, Bruno; Zingg, Patrick O; Zinkernagel, Annelies S; Gerber, Christian; Achermann, Yvonne (2018). Perioperative antibiotic prophylaxis has no effect on time to positivity and proportion of positive samples: a cohort study of 64 Cutibacterium acnes bone and joint infections. Journal of Clinical Microbiology, 56(2):e01576-17.

van der Kooi, Tjallie; Sax, Hugo; Pittet, Didier; van Dissel, Jaap; van Benthem, Birgit; Walder, Bernhard; Cartier, Vanessa; Clack, Lauren; de Greeff, Sabine; Wolkewitz, Martin; Hieke, Stefanie; Boshuizen, Hendriek; van de Kassteele, Jan; Van den Abeele, Annemie; PROHIBIT consortium; et al (2018). Prevention of hospital infections by intervention and training (PROHIBIT): results of a pan-European cluster-randomized multicentre study to reduce central venous catheter-related bloodstream infections. Intensive Care Medicine, 44(1):48-60.

Achermann, Yvonne; Liu, Jared; Zbinden, Reinhard; Zingg, Patrick O; Anagnostopoulos, Alexia; Barnard, Emma; Sutter, Reto; Li, Huiying; McDowell, Andrew; Zinkernagel, Annelies S (2018). Propionibacterium avidum - a virulent pathogen causing hip periprosthetic joint infection. Clinical Infectious Diseases, 66(1):54-63.

Wolfensberger, A; Meier, A H; Kuster, S P; Mehra, T; Meier, M-T; Sax, H (2018). Should International Classification of Diseases codes be used to survey hospital-acquired pneumonia? Journal of Hospital Infection, 99(1):81-84.

Abbas, M; Aghayev, E; Troillet, Nicolas; Eisenring, Marie-Christine; Kuster, S P; Widmer, A F; Harbarth, Stephan; SwissNoso (2018). Temporal trends and epidemiology of Staphylococcus aureus surgical site infection in the Swiss surveillance network: a cohort study. Journal of Hospital Infection, 98(2):118-126.

2017

Wensing, Annemarie M; Calvez, Vincent; Günthard, Huldrych F; Johnson, Victoria A; Paredes, Roger; Pillay, Deenan; Shafer, Robert W; Richman, Douglas D (2017). 2017 Update of the Drug Resistance Mutations in HIV-1. Topics in Antiviral Medicine, 24(4):132-133.

Seidl, Kati; Leemann, Michèle; Palheiros Marques, Miguel; Rachmühl, Carole; Leimer, Nadja; Andreoni, Federica; Achermann, Yvonne; Zinkernagel, Annelies S (2017). High level methicillin resistance correlates with reduced Staphylococcus aureus endothelial cell damage. International Journal of Medical Microbiology : IJMM, 307(1):11-20.

Kwizera, Richard; Parkes-Ratanshi, Rosalind; Page, Iain D; Sekaggya-Wiltshire, Christine; Musaazi, Joseph; Fehr, Jan; Castelnuovo, Barbara; Kambugu, Andrew; Denning, David W (2017). Elevated Aspergillus-specific antibody levels among HIV infected Ugandans with pulmonary tuberculosis. BMC Pulmonary Medicine, 17(1):149.

Bruggmann, Philip; Blach, Sarah; Deltenre, Pierre; Fehr, Jan; Kouyos, Roger; Lavanchy, Daniel; Müllhaupt, Beat; Rauch, Andri; Razavi, Homie; Schmid, Patrick; Semela, David; Stoeckle, Marcel; Negro, Franco (2017). Hepatitis C virus dynamics among intravenous drug users suggest that an annual treatment uptake above 10% would eliminate the disease by 2030. Swiss Medical Weekly, 147:w14543.

Lodi, Sara; Costagliola, Dominique; Sabin, Caroline A; Del Amo, Julia; Logan, Roger; Abgrall, Sophie; Reiss, Peter; van Sighem, Ard; Jose, Sophie; Bucher, Heiner C; Kovari, Helen; Ambrosioni, Juan; Pantazis, Nikos; Dabis, Francois; Vandenhende, Marie-Anne; Meyer, Laurence; Seng, Rémonie; Gill, M John; Phillips, Andrew N; Porter, Kholoud; Muga, Roberto; Tate, Janet; Justice, Amy; et al (2017). Effect of Immediate Initiation of Antiretroviral Treatment in HIV-Positive Individuals Aged 50 Years or Older. Journal of Acquired Immune Deficiency Syndromes, 76(3):311-318.

Hampel, Benjamin; Kusejko, K; Braun, D L; Harrison-Quintana, J; Kouyos, Roger; Fehr, J (2017). Assessing the need for a pre-exposure prophylaxis programme using the social media app Grindr®. HIV Medicine, 18(10):772-776.

Boyd, Mark A; Mocroft, Amanda; Ryom, Lene; Monforte, Antonella d'Arminio; Sabin, Caroline; El-Sadr, Wafaa M; Hatleberg, Camilla Ingrid; De Wit, Stephane; Weber, Rainer; Fontas, Eric; Phillips, Andrew; Bonnet, Fabrice; Reiss, Peter; Lundgren, Jens; Law, Matthew (2017). Cardiovascular disease (CVD) and chronic kidney disease (CKD) event rates in HIV-positive persons at high predicted CVD and CKD risk: a prospective analysis of the D:A:D observational study. PLoS Medicine, 14(11):e1002424.

Troillet, N; Eisenring, Marie-Christine; Widmer, A F (2017). First Results of the Swiss National Surgical Site Infection Surveillance Program: Who Seeks Shall Find - ERRATUM. Infection Control and Hospital Epidemiology, 38(11):1389.

Lysenko, Veronika; McHugh, Donal; Behrmann, Lena; Rochat, Mary-Aude; Wilk, Christian M; Kovtonyuk, Larisa V; Bourquin, Jean-Pierre; Münz, Christian; Manz, Markus G; Speck, Roberto F; Theocharides, Alexandre P (2017). Humanised mouse models for haematopoiesis and infectious diseases. Swiss Medical Weekly, 147:w14516.

Wang, Qing; De Luca, Andrea; Smith, Colette; Zangerle, Robert; Sambatakou, Helen; Bonnet, Fabrice; Smit, Colette; Schommers, Philipp; Thornton, Alicia; Berenguer, Juan; Peters, Lars; Spagnuolo, Vincenzo; Ammassari, Adriana; Antinori, Andrea; Roldan, Eugenia Quiros; Mussini, Cristina; Miro, Jose M; Konopnicki, Deborah; Fehr, Jan; Campbell, Maria A; Termote, Monique; Bucher, Heiner C (2017). Chronic hepatitis B and C virus infection and risk for non-hodgkin lymphoma in HIV-infected patients: a cohort study. Annals of Internal Medicine, 166(1):9-17.

AIDS-defining Cancer Project Working Group for IeDEA; COHERE (2017). Comparison of Kaposi Sarcoma Risk in Human Immunodeficiency Virus-Positive Adults Across 5 Continents: A Multiregional Multicohort Study. Clinical Infectious Diseases, 65(8):1316-1326.

Lewandowska, Dagmara Wanda; Zagordi, Osvaldo; Geissberger, Fabienne-Desirée; Kufner, Verena; Schmutz, Stefan; Böni, Jürg; Metzner, Karin J; Trkola, Alexandra; Huber, Michael (2017). Correction to: Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples. Microbiome, 5(1):137.

Leboeuf, C; Wilk, S; Achermann, R; Binet, I; Golshayan, D; Hadaya, K; Hirzel, C; Hoffmann, M; Huynh-Do, U; Koller, M T; Manuel, O; Mueller, N J; Mueller, T F; Schaub, Stefan; van Delden, C; Weissbach, F H; Hirsch, H H; Swiss Transplant Cohort Study (2017). BK polyomavirus-specific 9mer CD8 T cell responses correlate with clearance of BK viremia in kidney transplant recipients: first report from the Swiss Transplant Cohort Study. American Journal of Transplantation, 17(10):2591-2600.

Kuster, Stefan P; Eisenring, Marie-Christine; Sax, Hugo; Troillet, Nicolas (2017). Structure, Process, and Outcome Quality of Surgical Site Infection Surveillance in Switzerland. Infection Control and Hospital Epidemiology, 38(10):1172-1181.

Sekaggya-Wiltshire, Christine; Castelnuovo, Barbara; von Braun, Amrei; Musaazi, Joseph; Muller, Daniel; Buzibye, Allan; Gutteck, Ursula; Henning, Lars; Ledergerber, Bruno; Corti, Natascia; Lamorde, Mohammed; Fehr, Jan; Kambugu, Andrew (2017). Cohort profile of a study on outcomes related to tuberculosis and antiretroviral drug concentrations in Uganda: design, methods and patient characteristics of the SOUTH study. BMJ Open, 7(9):e014679.

Swiss HIV Cohort Study; Turk, Teja; Bachmann, Nadine; Kadelka, Claus; Böni, Jürg; Yerly, Sabine; Aubert, Vincent; Klimkait, Thomas; Battegay, Manuel; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Furrer, Hansjakob; Hoffmann, Matthias; Günthard, Huldrych F; Kouyos, Roger D; et al (2017). Assessing the danger of self-sustained HIV epidemics in heterosexuals by population based phylogenetic cluster analysis. eLife, 6:e28721.

Elzi, Luigia; Erb, Stefan; Furrer, Hansjakob; Cavassini, Matthias; Calmy, Alexandra; Vernazza, Pietro; Günthard, Huldrych; Bernasconi, Enos; Battegay, Manuel; Swiss HIV Cohort Study (2017). Adverse events of raltegravir and dolutegravir. AIDS, 31(13):1853-1858.

Blaser, Nello; Bertisch, Barbara; Kouyos, Roger D; Calmy, Alexandra; Bucher, Heiner C; Cavassini, Matthias; Estill, Janne; Keiser, Olivia; Egger, Matthias; Swiss HIV Cohort Study (2017). Impact of screening and antiretroviral therapy on anal cancer incidence in HIV-positive MSM. AIDS, 31(13):1859-1866.

Lauche, Romy; Wayne, Peter M; Fehr, Johannes; Stumpe, Christoph; Dobos, Gustav; Cramer, Holger (2017). Does postural awareness contribute to exercise-induced improvements in neck pain intensity? A secondary analysis of a randomized controlled trial evaluating Tai Chi and neck exercises. Spine, 42(16):1195-1200.

Lewandowska, Dagmara W; Zagordi, Osvaldo; Geissberger, Fabienne-Desirée; Kufner, Verena; Schmutz, Stefan; Böni, Jürg; Metzner, Karin J; Trkola, Alexandra; Huber, Michael (2017). Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples. Microbiome, 5(1):94.

Wilk, C Matthias; Weber, Isabel; Seidl, Kati; Rachmühl, Carole; Holzmann-Bürgel, Anne; Müller, Antonia M S; Kuster, Stefan P; Schanz, Urs; Zinkernagel, Annelies S (2017). Impact of oral gut decontamination on staphylococcus aureus colonization in patients undergoing allogeneic hematopoietic stem cell transplantation. International Journal of Antimicrobial Agents, 50(6):726-729.

van Ingen, Jakko; Kohl, Thomas A; Kranzer, Katharina; Hasse, Barbara; Keller, Peter M; et al (2017). Global outbreak of severe Mycobacterium chimaera disease after cardiac surgery: a molecular epidemiological study. Lancet Infectious Diseases, 17(10):1033-1041.

Sculier, Delphine; Gayet-Ageron, Angèle; Battegay, Manuel; Cavassini, Matthias; Fehr, Jan; Hirzel, Cedric; Schmid, Patrick; Bernasconi, Enos; Calmy, Alexandra; Swiss HIV Cohort Study (2017). Rilpivirine use in the Swiss HIV cohort study: a prospective cohort study. BMC Infectious Diseases, 17(1):476.

Tarr, Philip E; Kovari, Helen (2017). Another statin option in HIV. The lancet. HIV., 4(7):e278-e279.

Matt, U; Selchow, P; Dal Molin, M; Strommer, S; Sharif, O; Schilcher, K; Andreoni, F; Stenzinger, A; Zinkernagel, A S; Zeitlinger, M; Sander, P; Nemeth, J (2017). Chloroquine enhances the antimycobacterial activity of isoniazid and pyrazinamide by reversing inflammation-induced macrophage efflux. International Journal of Antimicrobial Agents, 50(1):55-62.

BEEHIVE Collaboration; Kouyos, Roger; Fellay, Jacques; Günthard, Huldrych F; et al (2017). Correction: Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe. PLoS Biology, 15(7):e1002608.

Kok, Yik Lim; Ciuffi, Angela; Metzner, Karin J (2017). Unravelling HIV-1 latency, one cell at a time. Trends in Microbiology, 25(11):932-941.

Damonti, Lauro; Erard, Véronique; Garbino, Jorge; Schrenzel, Jacques; Zimmerli, Stefan; Mühlethaler, Konrad; Imhof, Alexander;