Publication: Using existing biomedical resources to detect and ground terms in biomedical literature
Using existing biomedical resources to detect and ground terms in biomedical literature
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Kaljurand, K., Rinaldi, F., Kappeler, T., & Schneider, G. (2009). Using existing biomedical resources to detect and ground terms in biomedical literature. In C. Combi, Y. Shahar, & A. Abu-Hanna (Eds.), Artificial Intelligence in Medicine: 12th Conference on Artificial Intelligence in Medicine, AIME 2009, Verona, Italy, July 18-22, 2009. Proceedings (No. 5651; Issue 5651, pp. 225–234). Springer. https://doi.org/10.1007/978-3-642-02976-9_32
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We present an approach towards the automatic detection of names of proteins, genes, species, etc. in biomedical literature and their grounding to widely accepted identifiers. The annotation is based on a large term list that contains the common expression of the terms, a normalization step that matches the terms with their actual representation in the texts, and a disambiguation step that resolves the ambiguity of matched terms. We describe various characteristics of the terms found in existing term resources and of the terms that are
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- Kaljurand, K
- Rinaldi, Fabio
- Kappeler, T
- Schneider, G
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Kaljurand, K., Rinaldi, F., Kappeler, T., & Schneider, G. (2009). Using existing biomedical resources to detect and ground terms in biomedical literature. In C. Combi, Y. Shahar, & A. Abu-Hanna (Eds.), Artificial Intelligence in Medicine: 12th Conference on Artificial Intelligence in Medicine, AIME 2009, Verona, Italy, July 18-22, 2009. Proceedings (No. 5651; Issue 5651, pp. 225–234). Springer. https://doi.org/10.1007/978-3-642-02976-9_32
