Publication: Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager
Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager
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Fellows Yates, J. A., Lamnidis, T. C., Borry, M., Andrades Valtueña, A., Fagernäs, Z., Clayton, S., Garcia, M. U., Neukamm, J., & Peltzer, A. (2021). Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager. PeerJ, 9, e10947. https://doi.org/10.7717/peerj.10947
Abstract
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Abstract
The broadening utilisation of ancient DNA to address archaeological, palaeontological, and biological questions is resulting in a rising diversity in the size of laboratories and scale of analyses being performed. In the context of this heterogeneous landscape, we present an advanced, and entirely redesigned and extended version of the EAGER pipeline for the analysis of ancient genomic data. This Nextflow pipeline aims to address three main themes: accessibility and adaptability to different computing configurations, reproducibility t
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- Fellows Yates, James A
- Lamnidis, Thiseas C
- Borry, Maxime
- Andrades Valtueña, Aida
- Fagernäs, Zandra
- Clayton, Stephen
- Garcia, Maxime U
- Neukamm, Judith
- Peltzer, Alexander
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Fellows Yates, J. A., Lamnidis, T. C., Borry, M., Andrades Valtueña, A., Fagernäs, Z., Clayton, S., Garcia, M. U., Neukamm, J., & Peltzer, A. (2021). Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager. PeerJ, 9, e10947. https://doi.org/10.7717/peerj.10947
