Publication:

Systematic identification of structure-specific protein–protein interactions

Date

Date

Date
2024
Journal Article
Published version

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Citation copied

Holfeld, A., Schuster, D., Sesterhenn, F., Gillingham, A. K., Stalder, P., Haenseler, W., Barrio-Hernandez, I., Ghosh, D., Vowles, J., Cowley, S. A., Nagel, L., Khanppnavar, B., Serdiuk, T., Beltrao, P., Korkhov, V. M., Munro, S., Riek, R., de Souza, N., & Picotti, P. (2024). Systematic identification of structure-specific protein–protein interactions. Molecular Systems Biology, 20(6), 651–675. https://doi.org/10.1038/s44320-024-00037-6

Abstract

Abstract

Abstract

The physical interactome of a protein can be altered upon perturbation, modulating cell physiology and contributing to disease. Identifying interactome differences of normal and disease states of proteins could help understand disease mechanisms, but current methods do not pinpoint structure-specific PPIs and interaction interfaces proteome-wide. We used limited proteolysis–mass spectrometry (LiP–MS) to screen for structure-specific PPIs by probing for protease susceptibility changes of proteins in cellular extracts upon treatment wit

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41 since deposited on 2024-05-09
37last week
Acq. date: 2025-11-13

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122 since deposited on 2024-05-09
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Acq. date: 2025-11-13

Additional indexing

Creators (Authors)

  • Holfeld, Aleš
    affiliation.icon.alt
  • Schuster, Dina
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  • Sesterhenn, Fabian
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  • Gillingham, Alison K
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  • Stalder, Patrick
    affiliation.icon.alt
  • Barrio-Hernandez, Inigo
    affiliation.icon.alt
  • Ghosh, Dhiman
    affiliation.icon.alt
  • Vowles, Jane
    affiliation.icon.alt
  • Cowley, Sally A
    affiliation.icon.alt
  • Nagel, Luise
    affiliation.icon.alt
  • Khanppnavar, Basavraj
    affiliation.icon.alt
  • Serdiuk, Tetiana
    affiliation.icon.alt
  • Beltrao, Pedro
    affiliation.icon.alt
  • Korkhov, Volodymyr M
    affiliation.icon.alt
  • Munro, Sean
    affiliation.icon.alt
  • Riek, Roland
    affiliation.icon.alt
  • de Souza, Natalie
    affiliation.icon.alt
  • Picotti, Paola
    affiliation.icon.alt

Journal/Series Title

Journal/Series Title

Journal/Series Title

Volume

Volume

Volume
20

Number

Number

Number
6

Page range/Item number

Page range/Item number

Page range/Item number
651

Page end

Page end

Page end
675

Item Type

Item Type

Item Type
Journal Article

Dewey Decimal Classifikation

Dewey Decimal Classifikation

Dewey Decimal Classifikation

Keywords

Limited Proteolysis, Mass Spectrometry, Structural Proteomics, Protein–protein Interactions, Structure-Specific Interactions, Proteomics

Language

Language

Language
English

Publication date

Publication date

Publication date
2024-05-03

Date available

Date available

Date available
2024-05-09

Publisher

Publisher

Publisher

ISSN or e-ISSN

ISSN or e-ISSN

ISSN or e-ISSN
1744-4292

Additional Information

Additional Information

Additional Information
The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE partner repository (Perez-Riverol et al, 2022). They are available at PXD039481, PXD039520, PXD039784, and PXD048849. The custom R scripts developed and used in this study are available via GitHub at https://gitfront.io/r/PicottiGroup/FeTezEanyUFM/LiP-MS-protein-protein-interactions-lip-data-structural-analysis-protein-protein-interactions/.

OA Status

OA Status

OA Status
Gold

Free Access at

Free Access at

Free Access at
DOI

PubMed ID

PubMed ID

PubMed ID

Other Identification Number

Other Identification Number

Other Identification Number
Corpus ID: 256617477

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Related URLs

Related URLs

Metrics

Downloads

41 since deposited on 2024-05-09
37last week
Acq. date: 2025-11-13

Views

122 since deposited on 2024-05-09
121last week
Acq. date: 2025-11-13

Citations

Citation copied

Holfeld, A., Schuster, D., Sesterhenn, F., Gillingham, A. K., Stalder, P., Haenseler, W., Barrio-Hernandez, I., Ghosh, D., Vowles, J., Cowley, S. A., Nagel, L., Khanppnavar, B., Serdiuk, T., Beltrao, P., Korkhov, V. M., Munro, S., Riek, R., de Souza, N., & Picotti, P. (2024). Systematic identification of structure-specific protein–protein interactions. Molecular Systems Biology, 20(6), 651–675. https://doi.org/10.1038/s44320-024-00037-6

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